Citrus Sinensis ID: 027118

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVAERKIN
Secondary Structure (PSIPRED)
ccEEEEEEccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccEEcccccccEEccccccccccccccccccccccccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHHHHcccHHHccccccccccccccccccHHHHHHHccccccccccccccHHHccccccccccHHccccEEEEccccccEEEccccccccHccccccccccccccHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHcEccccccccccEccccccEEEcccccccEEccccccEEEEEEccccccHHccccccccccHHHHccHHHHHHHHcc
Coil and Loop (DISEMBL)
MSINIVVAMAGLevhhsshqqfepmstsckadeifstpsyshladreflvteestnhngsteLLRKGFMEYGCQHYrrrcrirapccneifdcrhchneamnninvdqklrhdiprhevNQVICSLCGTEQKVQQVCVNCgvcmgeyfcescklfdddtskkqyhcdgcgicriggcdnffhcnkcrccysmllknshpcvegamhhdcpvccevihynfpvaerkin
Flexible Loop (DISEMBL)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTeestnhngstellrkgFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVAERKIN
Low Complexity Region (SEG)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHcdgcgicriggcdNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVAERKIN
Disordered region (IsUnstruct)
****IVVAMAGL*****************************HLADREFLV**********TELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVA*****
Disordered Region (DISOPRED)
***NIVV***************************************************************YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPV*E****
Disordered Region (DISEMBL)
MSINIVVAMAGLEVHH***********SCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVAERKIN
Disordered Region (DISPRO)
*SINIVVAMAGLEVHHSS********************************************LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVAERKIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q96PM5	261	RING finger and CHY zinc	yes	no	0.627	0.547	0.441	1e-29
Q9CR50	261	RING finger and CHY zinc	yes	no	0.618	0.540	0.434	4e-29
O14099	425	Uncharacterized RING fing	yes	no	0.719	0.385	0.387	7e-28

>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 90/154 (58%), Gaps = 11/154 (7%)

Query: 70  EYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGT 129
           + GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C  
Sbjct: 17  QRGCEHYDRGCLLKAPCCDKLYTCRLCH---------DNNEDHQLDRFKVKEVQCINCEK 67

Query: 130 EQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCC 189
            Q  QQ C  C    GEY+C+ C LFD D  KKQYHC+ CGICRIG  ++FFHC KC  C
Sbjct: 68  IQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLC 125

Query: 190 YSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVA 223
            +M L+  H C+E     +CP+C E IH +  VA
Sbjct: 126 LAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVA 159

Mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including p53/TP53, HDAC1 and CDKN1B. Preferentially acts on tetrameric p53/TP53. Contributes to the regulation of CDKN1B and p53/TP53 levels, and thereby contributes to the regulation of the cell cycle progression. Increases AR transcription factor activity.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 88/152 (57%), Gaps = 11/152 (7%)

Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct: 19  GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 69

Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYS 191
             QQ C +C    GEY+C  C LFD D  K+QYHC+ CGICRIG  ++FFHC KC  C +
Sbjct: 70  HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLT 127

Query: 192 MLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVA 223
             L+  H C+E     +CP+C E IH +  VA
Sbjct: 128 TNLRGKHKCIENVSRQNCPICLEDIHTSRVVA 159

Mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including p53/TP53, HDAC1 and CDKN1B. Preferentially acts on tetrameric p53/TP53. Increases AR transcription factor activity (By similarity). Contributes to the regulation of CDKN1B and p53/TP53 levels, and thereby contributes to the regulation of the cell cycle progression.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1

 Score =  124 bits (310), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 19/183 (10%)

Query: 52  EESTNHNGSTELLRKGFME-----YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINV 106
           +ES  +  S+  L K + +      GC HY R C+++   C+E + CRHCHN+A +    
Sbjct: 116 KESDENQLSSSDLEKTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACD---- 171

Query: 107 DQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHC 166
                H + R  V  ++C +C   Q   Q C  C  CMG Y+C  CKL+DDD +K  YHC
Sbjct: 172 -----HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHC 226

Query: 167 DGCGICRIGG--CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVAE 224
           D CGICRIG    D++FHC  C  C  + + N+H C+E +   +CP+C E   Y F   E
Sbjct: 227 DDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGE---YMFNSRE 283

Query: 225 RKI 227
           R I
Sbjct: 284 RVI 286

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
224092372	300	predicted protein [Populus trichocarpa]	0.75	0.57	0.802	2e-76
356563813	308	PREDICTED: RING finger and CHY zinc fing	0.912	0.675	0.673	1e-75
356552549	308	PREDICTED: RING finger and CHY zinc fing	0.912	0.675	0.682	3e-75
225430120	315	PREDICTED: RING finger and CHY zinc fing	0.912	0.660	0.666	2e-74
296081945	294	unnamed protein product [Vitis vinifera]	0.758	0.588	0.765	3e-73
356515508	309	PREDICTED: RING finger and CHY zinc fing	0.890	0.656	0.650	4e-73
356552551	323	PREDICTED: RING finger and CHY zinc fing	0.912	0.643	0.636	3e-72
255635979	309	unknown [Glycine max]	0.890	0.656	0.646	3e-72
449437104	307	PREDICTED: RING finger and CHY zinc fing	0.855	0.635	0.660	2e-71
357466411	309	RING finger and CHY zinc finger domain-c	0.890	0.656	0.622	3e-70

>gi|224092372|ref|XP_002309580.1| predicted protein [Populus trichocarpa] gi|118485648|gb|ABK94674.1| unknown [Populus trichocarpa] gi|222855556|gb|EEE93103.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 153/172 (88%), Gaps = 1/172 (0%)

Query: 45  DREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNI 104
           + +F+ +EES N   + ++L KG MEYGC HYRRRCRIRAPCCNE+FDCRHCHNEA NNI
Sbjct: 28  NEDFIFSEESMNVE-TPQILDKGLMEYGCLHYRRRCRIRAPCCNEVFDCRHCHNEAKNNI 86

Query: 105 NVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQY 164
           NVDQK RHD+PRHEV QVICSLCGTEQ+VQQVC+NCGVCMG+YFCE+CKLFDDDTSKKQY
Sbjct: 87  NVDQKHRHDMPRHEVKQVICSLCGTEQEVQQVCINCGVCMGKYFCETCKLFDDDTSKKQY 146

Query: 165 HCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
           HCDGCGICRIGG +NFFHC KC CCYS LLKNSHPCVEGAMHHDCPVC E +
Sbjct: 147 HCDGCGICRIGGPENFFHCYKCGCCYSNLLKNSHPCVEGAMHHDCPVCFEFL 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563813|ref|XP_003550153.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 159/208 (76%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    S    E    P  S++       + +ST+H    +L  +G+
Sbjct: 1   MGEVAVMHSEPLQFECNDISVNMTEKEVYPPESNVERLPGEESSQSTDHKNINDLQERGY 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCG 128
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+DQK RHDIPRH+V QVICSLCG
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVKQVICSLCG 120

Query: 129 TEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRC 188
           TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GG +NFFHC KC C
Sbjct: 121 TEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGSENFFHCYKCGC 180

Query: 189 CYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
           CYS LLKNSHPCVEGAMHHDCPVC E +
Sbjct: 181 CYSTLLKNSHPCVEGAMHHDCPVCFEYL 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552549|ref|XP_003544629.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform 1 [Glycine max]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/208 (68%), Positives = 158/208 (75%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    +    E    P  S++       + +ST+H     L  KGF
Sbjct: 1   MGEVAVMHSEPLQFECNDITVNMTEKEVYPPESNVDHLPGEESSQSTDHKNINYLQEKGF 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCG 128
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+D KLRHDIPRHEV QVICSLCG
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDLKLRHDIPRHEVKQVICSLCG 120

Query: 129 TEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRC 188
           TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GG +NFFHC KC C
Sbjct: 121 TEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCCGCGICRTGGSENFFHCYKCGC 180

Query: 189 CYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
           CYS LLKNSHPCVEGAMHHDCPVC E +
Sbjct: 181 CYSTLLKNSHPCVEGAMHHDCPVCFEYL 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430120|ref|XP_002284652.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Vitis vinifera] gi|147785653|emb|CAN68688.1| hypothetical protein VITISV_029477 [Vitis vinifera]

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 142/213 (66%), Positives = 166/213 (77%), Gaps = 5/213 (2%)

Query: 9   MAGLEVHHSSHQQFEPMSTS---CKADEIFSTPSYSHLADREFLVTEESTNHNGSTE--L 63
           M  +  +HS  Q FE  +        +E     S +  ++ E +  +E T+H   TE  L
Sbjct: 1   MTEMMANHSDSQHFELKNLKEMIFNVNERDVVKSCAQHSNGECMEIKEPTDHVEITEKEL 60

Query: 64  LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVI 123
           L KG+M+YGC HYRRRCRIRAPCCNEIFDCRHCHNEA N+I VD+  RHDIPRH+V QVI
Sbjct: 61  LEKGYMQYGCPHYRRRCRIRAPCCNEIFDCRHCHNEAKNSIKVDKAQRHDIPRHQVQQVI 120

Query: 124 CSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHC 183
           CSLC TEQ+V+QVC+NCGVCMG+YFCE+CKLFDDDTSKKQYHC+GCGICRIGG +NFFHC
Sbjct: 121 CSLCNTEQEVRQVCINCGVCMGKYFCETCKLFDDDTSKKQYHCNGCGICRIGGRENFFHC 180

Query: 184 NKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
            KCRCCYS+LLKNSHPCVEGAMHHDCPVC E +
Sbjct: 181 YKCRCCYSVLLKNSHPCVEGAMHHDCPVCFEYL 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081945|emb|CBI20950.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/175 (76%), Positives = 153/175 (87%), Gaps = 2/175 (1%)

Query: 44  ADREFLVTEESTNHNGSTE--LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAM 101
           ++ E +  +E T+H   TE  LL KG+M+YGC HYRRRCRIRAPCCNEIFDCRHCHNEA 
Sbjct: 18  SNGECMEIKEPTDHVEITEKELLEKGYMQYGCPHYRRRCRIRAPCCNEIFDCRHCHNEAK 77

Query: 102 NNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSK 161
           N+I VD+  RHDIPRH+V QVICSLC TEQ+V+QVC+NCGVCMG+YFCE+CKLFDDDTSK
Sbjct: 78  NSIKVDKAQRHDIPRHQVQQVICSLCNTEQEVRQVCINCGVCMGKYFCETCKLFDDDTSK 137

Query: 162 KQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
           KQYHC+GCGICRIGG +NFFHC KCRCCYS+LLKNSHPCVEGAMHHDCPVC E +
Sbjct: 138 KQYHCNGCGICRIGGRENFFHCYKCRCCYSVLLKNSHPCVEGAMHHDCPVCFEYL 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515508|ref|XP_003526442.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/212 (65%), Positives = 162/212 (76%), Gaps = 9/212 (4%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCK-ADEIFSTPSYSHLADREFLVTEEST---NHNGSTELL 64
           M  + V HS     EP+   C     I     Y+ L++ E ++ EES+   N     +L 
Sbjct: 1   MGEVAVMHS-----EPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVIC 124
            +G+M+YGCQHYRRRCRIRAPCC+EIFDCRHCHNEA NNIN+DQK RHDIPRH+V QVIC
Sbjct: 56  ERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVIC 115

Query: 125 SLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCN 184
           SLC TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GGC+NFFHC+
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCH 175

Query: 185 KCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
           KC CCYS  LKNSHPCVEGAMHHDCP+C E +
Sbjct: 176 KCGCCYSTQLKNSHPCVEGAMHHDCPICFEYL 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552551|ref|XP_003544630.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform 2 [Glycine max]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 142/223 (63%), Positives = 158/223 (70%), Gaps = 15/223 (6%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    +    E    P  S++       + +ST+H     L  KGF
Sbjct: 1   MGEVAVMHSEPLQFECNDITVNMTEKEVYPPESNVDHLPGEESSQSTDHKNINYLQEKGF 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEV--------- 119
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+D KLRHDIPRHEV         
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDLKLRHDIPRHEVKQVCLFILT 120

Query: 120 ------NQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
                  QVICSLCGTEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR
Sbjct: 121 FPIGISTQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCCGCGICR 180

Query: 174 IGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
            GG +NFFHC KC CCYS LLKNSHPCVEGAMHHDCPVC E +
Sbjct: 181 TGGSENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYL 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635979|gb|ACU18335.1| unknown [Glycine max]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 137/212 (64%), Positives = 161/212 (75%), Gaps = 9/212 (4%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCK-ADEIFSTPSYSHLADREFLVTEEST---NHNGSTELL 64
           M  + V HS     EP+   C     I     Y+ L++ E ++ EES+   N     +L 
Sbjct: 1   MGEVAVMHS-----EPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVIC 124
            +G+M+YGCQHYRRRCRIRAPCC+EIFDCRHCHNEA NNIN+DQK RHDIPRH+V QVIC
Sbjct: 56  ERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVIC 115

Query: 125 SLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCN 184
           SLC TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GGC+NFFHC+
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCH 175

Query: 185 KCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
           KC CCYS  LKNSHPCVE AMHHDCP+C E +
Sbjct: 176 KCGCCYSTQLKNSHPCVERAMHHDCPICFEYL 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437104|ref|XP_004136332.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cucumis sativus] gi|449505475|ref|XP_004162482.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cucumis sativus]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/206 (66%), Positives = 164/206 (79%), Gaps = 11/206 (5%)

Query: 17  SSHQQFEPMST------SCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFME 70
           +++ + +P+ T      +C+  EI +   Y+   D   L  E+S   N   ++L + +M+
Sbjct: 5   ATYSKPQPIGTEENQHMTCRGKEIRTV--YTEQFDSPALPFEKS---NDPQKVLEREYMQ 59

Query: 71  YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTE 130
           +GC HYRRRCRIRAPCCNEIFDCRHCHNE  N+I VDQK RH+IPRHEVNQVICSLCGTE
Sbjct: 60  HGCAHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTE 119

Query: 131 QKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCY 190
           Q+V+Q C+NCGVC G+YFCESCKLFDDDTSKKQYHC+GCGICRIGG +NFFHC+KC CCY
Sbjct: 120 QEVRQDCINCGVCFGKYFCESCKLFDDDTSKKQYHCNGCGICRIGGRENFFHCHKCGCCY 179

Query: 191 SMLLKNSHPCVEGAMHHDCPVCCEVI 216
           S+LLKNSHPCVEGAMHHDCPVC E +
Sbjct: 180 SILLKNSHPCVEGAMHHDCPVCFEYL 205

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466411|ref|XP_003603490.1| RING finger and CHY zinc finger domain-containing protein [Medicago truncatula] gi|355492538|gb|AES73741.1| RING finger and CHY zinc finger domain-containing protein [Medicago truncatula]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 156/212 (73%), Gaps = 9/212 (4%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLV----TEESTNHNGSTELL 64
           M  + V HS     EP+   C   ++ +     +L   E  +    + +S +H    +L 
Sbjct: 1   MGEVAVMHS-----EPLQFECNDRKLITEKDVHNLPSNEERMHGEKSSQSPDHKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVIC 124
            +G+MEYGCQHYRRRC IRAPCCNEIFDCRHCHNEA N+I++DQK RHDIPRH+V QVIC
Sbjct: 56  ERGYMEYGCQHYRRRCHIRAPCCNEIFDCRHCHNEAKNSIDIDQKHRHDIPRHQVKQVIC 115

Query: 125 SLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCN 184
           SLC TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GG +NFFHC 
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGSENFFHCY 175

Query: 185 KCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
           KC CCYS LLKN HPCVEGAMH DCPVC E +
Sbjct: 176 KCGCCYSTLLKNGHPCVEGAMHQDCPVCFEYL 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2179474	328	AT5G25560 [Arabidopsis thalian	0.881	0.612	0.586	1.2e-65
TAIR|locus:2172656	291	AT5G22920 [Arabidopsis thalian	0.719	0.563	0.597	7.3e-59
TAIR|locus:2180074	267	MIEL1 "MYB30-Interacting E3 Li	0.662	0.565	0.545	1.2e-47
TAIR|locus:2099212	287	AT3G62970 [Arabidopsis thalian	0.653	0.519	0.526	4.8e-46
ZFIN|ZDB-GENE-040801-73	264	rchy1 "ring finger and CHY zin	0.592	0.511	0.417	2.3e-30
UNIPROTKB|J3KQJ2	200	RCHY1 "RING finger and CHY zin	0.618	0.705	0.401	2.1e-29
UNIPROTKB|Q96PM5	261	RCHY1 "RING finger and CHY zin	0.618	0.540	0.401	2.1e-29
RGD|1359180	261	Rchy1 "ring finger and CHY zin	0.618	0.540	0.394	2.1e-29
UNIPROTKB|A4IFE2	261	RCHY1 "RCHY1 protein" [Bos tau	0.592	0.517	0.404	4.4e-29
UNIPROTKB|J9NZR5	259	RCHY1 "Uncharacterized protein	0.618	0.544	0.401	4.4e-29

TAIR|locus:2179474 AT5G25560 [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 125/213 (58%), Positives = 147/213 (69%)

Query:     9 MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTE-----L 63
             M  +  +H + QQ + MS   K +   S  S+ H  + E   +E ST    + E     +
Sbjct:     1 MGDVYFNHFA-QQLQ-MSDQEKGE--MSRHSHPHSINEE---SESSTLERVAAESLTNKV 53

Query:    64 LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVI 123
             L +G MEYGC HYRRRC IRAPCCNEIF C HCH EA NNINVDQK RHDIPRH+V QVI
Sbjct:    54 LDRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVI 113

Query:   124 CSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHC 183
             C LCGTEQ+V Q+C++CGVCMG+YFC+ CKL+DDDTSKKQYH             NFFHC
Sbjct:   114 CLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENFFHC 173

Query:   184 NKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
              KC CCYS+LLKN HPCVEGAMHHDCP+C E +
Sbjct:   174 YKCGCCYSILLKNGHPCVEGAMHHDCPICFEFL 206

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2172656 AT5G22920 [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 98/164 (59%), Positives = 121/164 (73%)

Query:    53 ESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRH 112
             E+  +     L+  G   YGC HYRRRC+IRAPCC+EIFDCRHCHNEA ++++++Q  RH
Sbjct:     7 ENEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRH 66

Query:   113 DIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXX 172
             ++PRHEV++VICSLC TEQ VQQ C NCGVCMG+YFC  CK FDDD SKKQYH       
Sbjct:    67 ELPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGIC 126

Query:   173 XXXXXXNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
                   NFFHC +CRCCYS ++++ H CVEGAMHH+CPVC E +
Sbjct:   127 RTGGEENFFHCKRCRCCYSKIMEDKHQCVEGAMHHNCPVCFEYL 170

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2180074 MIEL1 "MYB30-Interacting E3 Ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 84/154 (54%), Positives = 106/154 (68%)

Query:    64 LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNI-NVDQKLRHDIPRHEVNQV 122
             L  G M +GC+HY+RRC+IRAPCCNE+FDCRHCHNE+ + + N+    RHD+ R +V QV
Sbjct:     9 LHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLRNIYD--RHDLVRQDVKQV 66

Query:   123 ICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFH 182
             ICS+C TEQ   QVC NCGV MGEYFC  C  +DDDT K+Q+H             NFFH
Sbjct:    67 ICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCGICRVGGRENFFH 126

Query:   183 CNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
             C KC  CY++ L+N+H CVE +M H CP+C E +
Sbjct:   127 CKKCGSCYAVGLRNNHRCVENSMRHHCPICYEYL 160

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2099212 AT3G62970 [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 79/150 (52%), Positives = 102/150 (68%)

Query:    67 GFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSL 126
             G  ++GC+HY+RRC+IRAPCCN IF CRHCHN++ N++  D K RHD+ R  V QV+CS+
Sbjct:    29 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSLP-DPKERHDLVRQNVKQVVCSI 87

Query:   127 CGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKC 186
             C TEQ+V +VC NCGV MGEYFC+ CK FDDD SK+Q+H              FFHC  C
Sbjct:    88 CQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHCDDCGICRVGGRDKFFHCQNC 147

Query:   187 RCCYSMLLKNSHPCVEGAMHHDCPVCCEVI 216
               CY M L++ H C+E +  + CPVC E +
Sbjct:   148 GACYGMGLRDKHSCIENSTKNSCPVCYEYL 177

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

ZFIN|ZDB-GENE-040801-73 rchy1 "ring finger and CHY zinc finger domain containing 1" [Danio rerio (taxid:7955)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 61/146 (41%), Positives = 79/146 (54%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC + + CR CH         D +  H + R +V +V C++C T Q
Sbjct:     7 GCEHYVRSCLLKAPCCGKFYVCRLCH---------DAEETHQMDRFKVQEVKCAVCNTIQ 57

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
             + QQ+C  C V  GEY+C+ C LFD D  KKQYH              +FHC KC  C  
Sbjct:    58 EAQQICKECEVKFGEYYCDICHLFDKD--KKQYHCQPCGICRIGPREKYFHCTKCNLCLG 115

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEVIH 217
               LK+ H CVE     +CPVC E IH
Sbjct:   116 TELKDKHKCVENVSRQNCPVCMEDIH 141

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J3KQJ2 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 61/152 (40%), Positives = 81/152 (53%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH+      N D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDN-----NED----HQLDRFKVKEVQCINCEKIQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
               QQ C  C    GEY+C+ C LFD D  KKQYH             +FFHC KC  C +
Sbjct:    70 HAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVA 223
             M L+  H C+E     +CP+C E IH +  VA
Sbjct:   128 MNLQGRHKCIENVSRQNCPICLEDIHTSRVVA 159

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 61/152 (40%), Positives = 81/152 (53%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH+      N D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDN-----NED----HQLDRFKVKEVQCINCEKIQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
               QQ C  C    GEY+C+ C LFD D  KKQYH             +FFHC KC  C +
Sbjct:    70 HAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVA 223
             M L+  H C+E     +CP+C E IH +  VA
Sbjct:   128 MNLQGRHKCIENVSRQNCPICLEDIHTSRVVA 159

GO:0005102 "receptor binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008270 "zinc ion binding" evidence=IDA

GO:0002039 "p53 binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 60/152 (39%), Positives = 79/152 (51%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRACLLKAPCCDKLYTCRLCH---------DTHEDHQLDRFKVKEVQCINCEKLQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
               QQ C +C    GEY+C  C LFD D  KKQYH             +FFHC KC  C +
Sbjct:    70 HAQQTCEDCSTLFGEYYCSICHLFDKD--KKQYHCESCGICRIGPKEDFFHCLKCNLCLA 127

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVA 223
             M L+  H C+E     +CP+C E IH +  VA
Sbjct:   128 MTLRGKHKCIENVSRQNCPICLEDIHTSRVVA 159

GO:0000151 "ubiquitin ligase complex" evidence=IEA;ISO

GO:0002039 "p53 binding" evidence=IEA;ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0051865 "protein autoubiquitination" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|A4IFE2 RCHY1 "RCHY1 protein" [Bos taurus (taxid:9913)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 59/146 (40%), Positives = 77/146 (52%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH+      N D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDN-----NED----HQLDRFKVKEVQCINCEKIQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
               QQ C  C    GEY+C  C LFD D  KKQYH             +FFHC KC  C +
Sbjct:    70 HAQQTCEECSTLFGEYYCSVCHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEVIH 217
             M L+  H C+E     +CP+C E IH
Sbjct:   128 MNLQGKHKCIENVSRQNCPICLEDIH 153

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9NZR5 RCHY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 61/152 (40%), Positives = 80/152 (52%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH+      N D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDN-----NED----HQLDRFKVKEVQCINCEKIQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
               QQ C  C    GEY+C  C LFD D  KKQYH             +FFHC KC  C +
Sbjct:    70 HAQQSCEECSTLFGEYYCSICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVA 223
             M L+  H C+E     +CP+C E IH +  VA
Sbjct:   128 MNLQGKHKCIENVSRQNCPICLEDIHTSRVVA 159

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
pfam05495	74	pfam05495, zf-CHY, CHY zinc finger	2e-18

>gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger

 Score = 76.2 bits (188), Expect = 2e-18
 Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 12/85 (14%)

Query: 73  CQHYRRR-CRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           C+HY R  C IRAPCCN+ + CR CH+E  +         H + R  V  V+C +C TEQ
Sbjct: 1   CKHYHRNLCAIRAPCCNKYYPCRLCHDELED---------HPLDRWNVKAVLCGVCRTEQ 51

Query: 132 KVQQVCVNCGVCMGEYFCESCKLFD 156
            VQ+   NCGV   +Y+C  CKLF 
Sbjct: 52  TVQE--YNCGVEFADYYCPICKLFF 74

This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues. We have named this domain after the N-terminal motif CXHY. This domain can be found in isolation in some proteins, but is also often associated with pfam00097. One of the proteins in this family is a mitochondrial intermembrane space protein called Hot13. This protein is involved in the assembly of small TIM complexes. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG1940	276	consensus Zn-finger protein [General function pred	100.0
PF05495	71	zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc	99.91
COG4357	105	Zinc finger domain containing protein (CHY type) [	99.44
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	95.3
PF12773	50	DZR: Double zinc ribbon	92.5
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	91.26
PRK04023	1121	DNA polymerase II large subunit; Validated	88.85
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	88.53
PF13248	26	zf-ribbon_3: zinc-ribbon domain	86.66
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	86.19
PRK14559	645	putative protein serine/threonine phosphatase; Pro	85.72
PHA00626	59	hypothetical protein	85.48
TIGR00595	505	priA primosomal protein N'. All proteins in this f	84.31
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	83.21
PRK14714	1337	DNA polymerase II large subunit; Provisional	83.17

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=100.00  E-value=7.8e-44  Score=321.06  Aligned_cols=154  Identities=50%  Similarity=1.070  Sum_probs=148.6

Q ss_pred             CchhhccCCCccCccccccCcceecCCCCCeecCcchhhhhccCcCcCCcCCCCCCCCCCCeeEcCCCCccccccccCCC
Q 027118           60 STELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVN  139 (228)
Q Consensus        60 ~~~~~d~~~~~~GC~HY~R~ckIr~pCC~k~YpCR~CHDE~~~~~~~~~~~~H~ldR~~vk~VlCg~C~teQ~v~~~C~n  139 (228)
                      +.++.|++.+++||+||+|++++++|||++||+||+||+++.         +|.++|+.+.+|+|+.|.++|++++.|.+
T Consensus        22 ~~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s~---------~h~~~r~~v~~~~C~~C~~~q~~~~~c~~   92 (276)
T KOG1940|consen   22 HSDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNESE---------DHDLDRKTVYELLCMKCRKIQPVGQICSN   92 (276)
T ss_pred             ccccccccccccCCchhhhccccccccccceeeeEEecChhh---------hcccchhhhhhhhhhhHHhhhhhhhcccc
Confidence            347889999999999999999999999999999999999975         89999999999999999999999999999


Q ss_pred             CCCccceEecCccccccCCCCCCeeecCCCCcceecCCCceeeccccCccccccccCCccccCCCCCCCCccccCccccC
Q 027118          140 CGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYN  219 (228)
Q Consensus       140 Cg~~Fa~YfC~iCkl~Ddd~~K~~yHC~~CGICRvG~~~~ffHC~~C~~C~s~~l~~~HkCiE~~~~~nCPIC~E~lFtS  219 (228)
                      |+..+|+|||.+|+||||+++ .||||+.|||||+|++++||||++|+.|++..+.++|+|+|++++.|||||.|+||+|
T Consensus        93 c~~~~g~~~c~~C~l~dd~~~-~~~hC~~C~icr~g~~~~~fhc~~c~~c~~~~~~~~H~c~e~~~~~ncPic~e~l~~s  171 (276)
T KOG1940|consen   93 CHVELGEYYCLICKLFDDDPS-KQYHCDLCGICREGLGLDFFHCKKCKACLSAYLSNWHKCVERSSEFNCPICKEYLFLS  171 (276)
T ss_pred             chhhhhhhcCccccccccccc-ceeccccccccccccccchhHHhhhHhHHhhhcccccchhhhcccCCCchhHHHhccc
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 027118          220 FPVA  223 (228)
Q Consensus       220 ~~~~  223 (228)
                      .+++
T Consensus       172 ~~~~  175 (276)
T KOG1940|consen  172 FEDA  175 (276)
T ss_pred             cccC
Confidence            8665

>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.91  E-value=2.9e-25  Score=164.01  Aligned_cols=70  Identities=46%  Similarity=1.129  Sum_probs=53.5

Q ss_pred             ccccccC-cceecCCCCCeecCcchhhhhccCcCcCCcCCCCCCCCCCCeeEcCCCCccccccccCCCCCCccceEecCc
Q 027118           73 CQHYRRR-CRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCES  151 (228)
Q Consensus        73 C~HY~R~-ckIr~pCC~k~YpCR~CHDE~~~~~~~~~~~~H~ldR~~vk~VlCg~C~teQ~v~~~C~nCg~~Fa~YfC~i  151 (228)
                      |+||+|+ ++|+||||++|||||+||||+.         +|+++|+.+++|+||.|+++|++++.  +|+   |+|+|++
T Consensus         1 C~HY~~~~~~~~~~cC~~~y~C~~CHde~~---------~H~~~~~~~~~v~Cg~C~~~~~~~~~--~c~---~~~~C~~   66 (71)
T PF05495_consen    1 CKHYHRSLCAIRFPCCGKYYPCRFCHDELE---------DHPFDRWPVKRVICGKCRTEQPIDEY--SCG---ADYFCPI   66 (71)
T ss_dssp             -SS---S-EEEEETTTTEEESSHHHHHHCS---------SS---TTT--EEEETTT--EEES-SB--TT-----SEEETT
T ss_pred             CCCCCCCcEEEECCcccCeecHHHHHHHhc---------cCccccccccCeECCCCCCccChhhh--hcC---CCccCcC
Confidence            8999999 9999999999999999999975         89999999999999999999999887  777   9999999


Q ss_pred             ccccc
Q 027118          152 CKLFD  156 (228)
Q Consensus       152 Ckl~D  156 (228)
                      |++||
T Consensus        67 C~~~~   71 (71)
T PF05495_consen   67 CGLYF   71 (71)
T ss_dssp             TTEEE
T ss_pred             cCCCC
Confidence            99986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Pirh2 is an eukaryotic ubiquitin protein ligase, which has been shown to promote p53 degradation in mammals. Pirh2 physically interacts with p53 and promotes ubiquitination of p53 independently of MDM2. Like MDM2, Pirh2 is thought to participate in an autoregulatory feedback loop that controls p53 function. Pirh2 proteins contain three distinct zinc fingers, the CHY-type, the CTCHY-type which is C-terminal to the CHY-type zinc finger and a RING finger. The CHY-type zinc finger has no currently known function []. As well as Pirh2, the CHY-type zinc finger is also found in the following proteins: Yeast helper of Tim protein 13. Hot13 may have a role in the assembly and recycling of the small Tims, a complex of the mitochondrial intermembrane space that participates in the TIM22 import pathway for assembly of the inner membrane [] Several plant hypothetical proteins that also contain haemerythrin cation binding domains Several protozoan hypothetical proteins that also contain a Myb domain The solution structure of this zinc finger has been solved and binds 3 zinc atoms as shown in the following schematic representation: ++---------+-----+ || | | CXHYxxxxxxxxxCCxxxxxCxxCHxxxxxHxxxxxxxxxxxCxxCxxxxxxxxxCxxC | | | | | | | | +-+-----------------+--+ +--+---------+--+ 'C': conserved cysteine involved in the binding of one zinc atom. 'H': conserved histidine involved in the binding of one zinc atom. More information about these proteins can be found at Protein of the Month: Zinc Fingers []; GO: 0008270 zinc ion binding; PDB: 2DKT_A 2K2C_A.

>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]

Probab=99.44  E-value=2.8e-14  Score=112.80  Aligned_cols=73  Identities=22%  Similarity=0.572  Sum_probs=59.0

Q ss_pred             ccCccccccC---cceecCCCCCeecCcchhhhhccCcCcCCcCCCCCCCCCCCeeEcCCCCccccc-----cccCCCCC
Q 027118           70 EYGCQHYRRR---CRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKV-----QQVCVNCG  141 (228)
Q Consensus        70 ~~GC~HY~R~---ckIr~pCC~k~YpCR~CHDE~~~~~~~~~~~~H~ldR~~vk~VlCg~C~teQ~v-----~~~C~nCg  141 (228)
                      +.||.||+..   ++|||.||+|||+|++||||+++++-    +.++++.+..+.||||.|.++..+     ...||+|.
T Consensus        12 etRC~Hyht~~Diialkc~~C~kyYaCy~CHdel~~Hpf----~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~   87 (105)
T COG4357          12 ETRCLHYHTPLDIIALKCKCCQKYYACYHCHDELEDHPF----EPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQ   87 (105)
T ss_pred             cceeeEecCccceEeeeechhhhhhhHHHHHhHHhcCCC----ccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcC
Confidence            4699999996   78999999999999999999985443    233344556788999999987554     36799999


Q ss_pred             Cccce
Q 027118          142 VCMGE  146 (228)
Q Consensus       142 ~~Fa~  146 (228)
                      .+||.
T Consensus        88 spFNp   92 (105)
T COG4357          88 SPFNP   92 (105)
T ss_pred             CCCCc
Confidence            99984

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=95.30  E-value=0.014  Score=42.74  Aligned_cols=46  Identities=37%  Similarity=0.949  Sum_probs=33.6

Q ss_pred             CCeeEcCCCCcccc-----ccccCCCCCCc-cceEecCccccccCCCCCCeeecCCCCc
Q 027118          119 VNQVICSLCGTEQK-----VQQVCVNCGVC-MGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (228)
Q Consensus       119 vk~VlCg~C~teQ~-----v~~~C~nCg~~-Fa~YfC~iCkl~Ddd~~K~~yHC~~CGI  171 (228)
                      .+...|..|+.+-.     +.-.|||||.. .  |-|.+|+-+.     .+|.|++||+
T Consensus         5 ~~~~~CtSCg~~i~~~~~~~~F~CPnCG~~~I--~RC~~CRk~~-----~~Y~CP~CGF   56 (59)
T PRK14890          5 MEPPKCTSCGIEIAPREKAVKFLCPNCGEVII--YRCEKCRKQS-----NPYTCPKCGF   56 (59)
T ss_pred             ccCccccCCCCcccCCCccCEeeCCCCCCeeE--eechhHHhcC-----CceECCCCCC
Confidence            34567889986533     24579999985 4  4499998774     4799999986

>PF12773 DZR: Double zinc ribbon

Probab=92.50  E-value=0.12  Score=34.79  Aligned_cols=22  Identities=32%  Similarity=0.845  Sum_probs=14.9

Q ss_pred             cCCCCccccc-cccCCCCCCccc
Q 027118          124 CSLCGTEQKV-QQVCVNCGVCMG  145 (228)
Q Consensus       124 Cg~C~teQ~v-~~~C~nCg~~Fa  145 (228)
                      |..|+++.+. +..|++||+.+.
T Consensus         1 Cp~Cg~~~~~~~~fC~~CG~~l~   23 (50)
T PF12773_consen    1 CPHCGTPNPDDAKFCPHCGTPLP   23 (50)
T ss_pred             CCCcCCcCCccccCChhhcCChh
Confidence            5567766554 567888887776

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=91.26  E-value=0.14  Score=37.89  Aligned_cols=45  Identities=33%  Similarity=0.886  Sum_probs=34.1

Q ss_pred             eeEcCCCCccccc-----cccCCCCCCccceEecCccccccCCCCCCeeecCCCCc
Q 027118          121 QVICSLCGTEQKV-----QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (228)
Q Consensus       121 ~VlCg~C~teQ~v-----~~~C~nCg~~Fa~YfC~iCkl~Ddd~~K~~yHC~~CGI  171 (228)
                      ...|..|+.+-.+     .-.|||||... =|-|.+|+.+.     .+|-|++||+
T Consensus         9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~-I~Rc~~CRk~g-----~~Y~Cp~CGF   58 (61)
T COG2888           9 PPVCTSCGREIAPGETAVKFPCPNCGEVE-IYRCAKCRKLG-----NPYRCPKCGF   58 (61)
T ss_pred             CceeccCCCEeccCCceeEeeCCCCCcee-eehhhhHHHcC-----CceECCCcCc
Confidence            4689999987533     35799999544 36689998774     4799999986

>PRK04023 DNA polymerase II large subunit; Validated

Probab=88.85  E-value=0.36  Score=51.72  Aligned_cols=31  Identities=29%  Similarity=0.676  Sum_probs=14.2

Q ss_pred             cCCCCCCccceEecCccccccCCCCCCeeecCCCC
Q 027118          136 VCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCG  170 (228)
Q Consensus       136 ~C~nCg~~Fa~YfC~iCkl~Ddd~~K~~yHC~~CG  170 (228)
                      .|+.||......+|+.|.=.    .+.+|.|+.||
T Consensus       628 fCpsCG~~t~~frCP~CG~~----Te~i~fCP~CG  658 (1121)
T PRK04023        628 KCPSCGKETFYRRCPFCGTH----TEPVYRCPRCG  658 (1121)
T ss_pred             cCCCCCCcCCcccCCCCCCC----CCcceeCcccc
Confidence            44444444444444444322    34455555553

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=88.53  E-value=0.27  Score=39.52  Aligned_cols=26  Identities=31%  Similarity=0.871  Sum_probs=20.3

Q ss_pred             cccCCCCCCccceEecCccccccCCCCCCeeecCCCCc
Q 027118          134 QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (228)
Q Consensus       134 ~~~C~nCg~~Fa~YfC~iCkl~Ddd~~K~~yHC~~CGI  171 (228)
                      ..+|++||++|          |  +.+|.|-.|++||.
T Consensus         9 KR~Cp~CG~kF----------Y--DLnk~PivCP~CG~   34 (108)
T PF09538_consen    9 KRTCPSCGAKF----------Y--DLNKDPIVCPKCGT   34 (108)
T ss_pred             cccCCCCcchh----------c--cCCCCCccCCCCCC
Confidence            35799999865          5  45789999999984

The function of members of this family is unknown.

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=86.66  E-value=0.3  Score=29.64  Aligned_cols=24  Identities=33%  Similarity=0.908  Sum_probs=17.7

Q ss_pred             eeEcCCCCccccc-cccCCCCCCcc
Q 027118          121 QVICSLCGTEQKV-QQVCVNCGVCM  144 (228)
Q Consensus       121 ~VlCg~C~teQ~v-~~~C~nCg~~F  144 (228)
                      .+.|..|+++-+. +..|++||+.+
T Consensus         2 ~~~Cp~Cg~~~~~~~~fC~~CG~~L   26 (26)
T PF13248_consen    2 EMFCPNCGAEIDPDAKFCPNCGAKL   26 (26)
T ss_pred             cCCCcccCCcCCcccccChhhCCCC
Confidence            3678889886444 56899999864

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=86.19  E-value=0.47  Score=35.86  Aligned_cols=36  Identities=28%  Similarity=0.813  Sum_probs=22.1

Q ss_pred             CeeEcCCCCccccccccCCCCCCcc--------ceEecCccccc
Q 027118          120 NQVICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKLF  155 (228)
Q Consensus       120 k~VlCg~C~teQ~v~~~C~nCg~~F--------a~YfC~iCkl~  155 (228)
                      ....|..|+..-.....||.||..+        +.|||..|+=.
T Consensus        16 ~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~gL   59 (70)
T PF07191_consen   16 GHYHCEACQKDYKKEAFCPDCGQPLEVLKACGAVDYFCNHCHGL   59 (70)
T ss_dssp             TEEEETTT--EEEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-E
T ss_pred             CEEECccccccceecccCCCcccHHHHHHHhcccceeeccCCce
Confidence            4778888887766667788887763        68999988743

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=85.72  E-value=0.54  Score=47.91  Aligned_cols=32  Identities=28%  Similarity=0.781  Sum_probs=19.9

Q ss_pred             eEcCCCCccccc-cccCCCCCCccceEecCccc
Q 027118          122 VICSLCGTEQKV-QQVCVNCGVCMGEYFCESCK  153 (228)
Q Consensus       122 VlCg~C~teQ~v-~~~C~nCg~~Fa~YfC~iCk  153 (228)
                      ++|..|+++.+. +..|++||..+..-.|..|.
T Consensus         2 ~~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG   34 (645)
T PRK14559          2 LICPQCQFENPNNNRFCQKCGTSLTHKPCPQCG   34 (645)
T ss_pred             CcCCCCCCcCCCCCccccccCCCCCCCcCCCCC
Confidence            357777776554 45677777777644555554

>PHA00626 hypothetical protein

Probab=85.48  E-value=0.73  Score=33.83  Aligned_cols=30  Identities=23%  Similarity=0.534  Sum_probs=17.0

Q ss_pred             cCCCCCCccceEecCccccccCCCCCCeeecCCCCc
Q 027118          136 VCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (228)
Q Consensus       136 ~C~nCg~~Fa~YfC~iCkl~Ddd~~K~~yHC~~CGI  171 (228)
                      .||+||..- -+-|.+|+.|     .+.|-|++||.
T Consensus         2 ~CP~CGS~~-Ivrcg~cr~~-----snrYkCkdCGY   31 (59)
T PHA00626          2 SCPKCGSGN-IAKEKTMRGW-----SDDYVCCDCGY   31 (59)
T ss_pred             CCCCCCCce-eeeeceeccc-----CcceEcCCCCC
Confidence            467777631 1256666665     33566666664

>TIGR00595 priA primosomal protein N'

Probab=84.31  E-value=0.95  Score=44.36  Aligned_cols=49  Identities=22%  Similarity=0.658  Sum_probs=41.6

Q ss_pred             eecCCCCCeecCcchhhhhccCcCcCCcCCCCCCCCCCCeeEcCCCCccccccccCCCCCCc
Q 027118           82 IRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVC  143 (228)
Q Consensus        82 Ir~pCC~k~YpCR~CHDE~~~~~~~~~~~~H~ldR~~vk~VlCg~C~teQ~v~~~C~nCg~~  143 (228)
                      +.|.-||....|..|.-.+.         -|.    ....+.|-.|+..+++...||+||..
T Consensus       214 ~~C~~Cg~~~~C~~C~~~l~---------~h~----~~~~l~Ch~Cg~~~~~~~~Cp~C~s~  262 (505)
T TIGR00595       214 LLCRSCGYILCCPNCDVSLT---------YHK----KEGKLRCHYCGYQEPIPKTCPQCGSE  262 (505)
T ss_pred             eEhhhCcCccCCCCCCCceE---------Eec----CCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence            79999999999999987665         342    23589999999999999999999875

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=83.21  E-value=0.61  Score=27.87  Aligned_cols=21  Identities=38%  Similarity=0.956  Sum_probs=15.1

Q ss_pred             cCCCCccccc-cccCCCCCCcc
Q 027118          124 CSLCGTEQKV-QQVCVNCGVCM  144 (228)
Q Consensus       124 Cg~C~teQ~v-~~~C~nCg~~F  144 (228)
                      |..|+++-+. +..|++||+.+
T Consensus         2 Cp~CG~~~~~~~~fC~~CG~~l   23 (23)
T PF13240_consen    2 CPNCGAEIEDDAKFCPNCGTPL   23 (23)
T ss_pred             CcccCCCCCCcCcchhhhCCcC
Confidence            6778877444 66899998764

>PRK14714 DNA polymerase II large subunit; Provisional

Probab=83.17  E-value=1.2  Score=48.87  Aligned_cols=48  Identities=31%  Similarity=0.715  Sum_probs=24.6

Q ss_pred             eeEcCCCCccccccccCCCCCCcc-ceEecCcccccc-CCCCCCeeecCCCC
Q 027118          121 QVICSLCGTEQKVQQVCVNCGVCM-GEYFCESCKLFD-DDTSKKQYHCDGCG  170 (228)
Q Consensus       121 ~VlCg~C~teQ~v~~~C~nCg~~F-a~YfC~iCkl~D-dd~~K~~yHC~~CG  170 (228)
                      ...|..|+++-+ ...|+.||... ..|+|+.|..-- .+++. ...|+.||
T Consensus       667 ~rkCPkCG~~t~-~~fCP~CGs~te~vy~CPsCGaev~~des~-a~~CP~CG  716 (1337)
T PRK14714        667 RRRCPSCGTETY-ENRCPDCGTHTEPVYVCPDCGAEVPPDESG-RVECPRCD  716 (1337)
T ss_pred             EEECCCCCCccc-cccCcccCCcCCCceeCccCCCccCCCccc-cccCCCCC
Confidence            356777776533 24677777665 345566665421 11122 34555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
2k2c_A	137	Solution Nmr Structure Of N-Terminal Domain Of Huma		1e-18
2dkt_A	143	Solution Structure Of The Chy Zinc Finger Domain Of		1e-18

>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 70/130 (53%), Gaps = 11/130 (8%)
Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH+   NN +      H + R +V +V C  C   Q
Sbjct: 19  GCEHYDRGCLLKAPCCDKLYTCRLCHD---NNED------HQLDRFKVKEVQCINCEKIQ 69
Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
             QQ C  C    GEY+C+ C LFD D  KKQYH             +FFHC KC  C +
Sbjct: 70  HAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127
Query: 192 MLLKNSHPCV 201
           M L+  H C+
Sbjct: 128 MNLQGRHKCI 137

>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct: 18  GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 68
Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
             QQ C +C    GEY+C  C LFD D  K+QYH             +FFHC KC  C +
Sbjct: 69  HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126
Query: 192 MLLKNSHPCVEGA 204
             L+  H C+E  
Sbjct: 127 TNLRGKHKCIESG 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
2dkt_A	143	Ring finger and CHY zinc finger domain- containing	3e-41

>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143

 Score =  136 bits (344), Expect = 3e-41
 Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 11/138 (7%)

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCG 128
              GC+HY R C ++APCC++++ CR CH+   +         H + R +V +V C  C 
Sbjct: 15  GPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNED---------HQLDRFKVKEVQCINCE 65

Query: 129 TEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRC 188
             Q  QQ C +C    GEY+C  C LFD D  K+QYHC+ CGICRIG  ++FFHC KC  
Sbjct: 66  KLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNL 123

Query: 189 CYSMLLKNSHPCVEGAMH 206
           C +  L+  H C+E    
Sbjct: 124 CLTTNLRGKHKCIESGPS 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
2dkt_A	143	Ring finger and CHY zinc finger domain- containing	100.0
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	93.31
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	81.8

>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A

Probab=100.00  E-value=6.7e-59  Score=383.97  Aligned_cols=134  Identities=42%  Similarity=1.032  Sum_probs=128.5

Q ss_pred             hhccCCCccCccccccCcceecCCCCCeecCcchhhhhccCcCcCCcCCCCCCCCCCCeeEcCCCCccccccccCCCCCC
Q 027118           63 LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGV  142 (228)
Q Consensus        63 ~~d~~~~~~GC~HY~R~ckIr~pCC~k~YpCR~CHDE~~~~~~~~~~~~H~ldR~~vk~VlCg~C~teQ~v~~~C~nCg~  142 (228)
                      .+|++++++||+||+|+|+|+||||++|||||+||||++         +|+++|+.+++|+||+|+++|++++.|++||+
T Consensus         9 ~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~---------dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg~   79 (143)
T 2dkt_A            9 VRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKLQHAQQTCEDCST   79 (143)
T ss_dssp             CCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS---------SSCCCSSSCCCEEESSSCCEECSCSBCSSSCC
T ss_pred             ccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc---------ccccchhccceeeecccCccccccCcCCCCCc
Confidence            347788899999999999999999999999999999974         89999999999999999999999999999999


Q ss_pred             ccceEecCccccccCCCCCCeeecCCCCcceecCCCceeeccccCccccccccCCccccCCCCCC
Q 027118          143 CMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHH  207 (228)
Q Consensus       143 ~Fa~YfC~iCkl~Ddd~~K~~yHC~~CGICRvG~~~~ffHC~~C~~C~s~~l~~~HkCiE~~~~~  207 (228)
                      .||+|||+||||||  ++|+||||++|||||+|+++|||||++||+|||++|+++|+|||++|++
T Consensus        80 ~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s  142 (143)
T 2dkt_A           80 LFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS  142 (143)
T ss_dssp             BSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred             cceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence            99999999999997  4699999999999999999999999999999999999999999999976

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=93.31  E-value=0.036  Score=41.76  Aligned_cols=29  Identities=28%  Similarity=0.765  Sum_probs=18.8

Q ss_pred             eEcCCCCccccccccCCCCCCccceEecCccccc
Q 027118          122 VICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLF  155 (228)
Q Consensus       122 VlCg~C~teQ~v~~~C~nCg~~Fa~YfC~iCkl~  155 (228)
                      .+|..|+.+..+   |..||+.  .|||.-|+=.
T Consensus        32 afCPeCgq~Le~---lkACGA~--~yFC~~C~~L   60 (81)
T 2jrp_A           32 ALCPDCRQPLQV---LKACGAV--DYFCQNGHGL   60 (81)
T ss_dssp             EECSSSCSCCCE---EEETTEE--EECCTTTTCC
T ss_pred             ccCcchhhHHHH---HHhcCCc--CeeeccCCCE
Confidence            366666655443   5666655  8999998744

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=81.80  E-value=0.77  Score=35.86  Aligned_cols=11  Identities=27%  Similarity=0.709  Sum_probs=7.5

Q ss_pred             ceEecCccccc
Q 027118          145 GEYFCESCKLF  155 (228)
Q Consensus       145 a~YfC~iCkl~  155 (228)
                      +.|||..|+=.
T Consensus        80 vdYFC~~chgL   90 (101)
T 2jne_A           80 VDYFCQHGHGL   90 (101)
T ss_dssp             EEEEETTTTEE
T ss_pred             cchhhccCCce
Confidence            56888877633

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d2dkta2	56	g.93.1.1 (A:82-137) RING finger and CHY zinc finge	2e-20
d2dkta1	74	g.89.1.1 (A:8-81) RING finger and CHY zinc finger	5e-12

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (196), Expect = 2e-20
 Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 145 GEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVE 202
           GEY+C  C LFD D  K+QYHC+ CGICRIG  ++FFHC KC  C +  L+  H C+E
Sbjct: 1   GEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIE 56

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (139), Expect = 5e-12
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 71  YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTE 130
            GC+HY R C ++APCC++++ CR CH+             H + R +V +V C  C   
Sbjct: 10  RGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKL 60

Query: 131 QKVQQVCVNCGV 142
           Q  QQ C +C  
Sbjct: 61  QHAQQTCEDCST 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d2dkta2	56	RING finger and CHY zinc finger domain-containing	99.96
d2dkta1	74	RING finger and CHY zinc finger domain-containing	99.78
d2dkta2	56	RING finger and CHY zinc finger domain-containing	86.43
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	80.46

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.9e-31  Score=188.12  Aligned_cols=56  Identities=57%  Similarity=1.394  Sum_probs=54.1

Q ss_pred             ceEecCccccccCCCCCCeeecCCCCcceecCCCceeeccccCccccccccCCccccC
Q 027118          145 GEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVE  202 (228)
Q Consensus       145 a~YfC~iCkl~Ddd~~K~~yHC~~CGICRvG~~~~ffHC~~C~~C~s~~l~~~HkCiE  202 (228)
                      |+|||+||||||||  |+||||++|||||||+++|||||++||+|||++|+++|+|||
T Consensus         1 G~YfC~iC~l~ddd--k~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~l~~~H~CiE   56 (56)
T d2dkta2           1 GEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIE   56 (56)
T ss_dssp             CSEECSSSCCEECS--SSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred             CceECCcCCcccCC--CCcccCCCCCceeecCCccccccCccccccCcccCCCccccC
Confidence            68999999999885  999999999999999999999999999999999999999997

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=7.8e-20  Score=132.95  Aligned_cols=72  Identities=35%  Similarity=0.858  Sum_probs=68.3

Q ss_pred             hccCCCccCccccccCcceecCCCCCeecCcchhhhhccCcCcCCcCCCCCCCCCCCeeEcCCCCccccccccCCCCCCc
Q 027118           64 LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVC  143 (228)
Q Consensus        64 ~d~~~~~~GC~HY~R~ckIr~pCC~k~YpCR~CHDE~~~~~~~~~~~~H~ldR~~vk~VlCg~C~teQ~v~~~C~nCg~~  143 (228)
                      +|..++.+||+||+|+|+|+|++||++|+|+.||+++.         .|.++|++++.++|..|+++|++...|++||..
T Consensus         3 ~~~~~~~~gC~HY~r~~~l~C~~Cg~~~~C~~C~~~lt---------~H~~~~k~~~~l~CH~Cg~~~~~~~~C~~Cgs~   73 (74)
T d2dkta1           3 RNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTL   73 (74)
T ss_dssp             CCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS---------SSCCCSSSCCCEEESSSCCEECSCSBCSSSCCB
T ss_pred             cCCCCCCCCCcccCcceEEEcCcCcCeeeCCCCCCccc---------ccccccccCCEEEeccCCCcccCCCcCCCCCCC
Confidence            56778899999999999999999999999999999975         799999999999999999999999999999998


Q ss_pred             c
Q 027118          144 M  144 (228)
Q Consensus       144 F  144 (228)
                      |
T Consensus        74 F   74 (74)
T d2dkta1          74 F   74 (74)
T ss_dssp             S
T ss_pred             C
Confidence            7

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.43  E-value=0.12  Score=34.84  Aligned_cols=31  Identities=29%  Similarity=0.802  Sum_probs=22.3

Q ss_pred             eEecCccccccCCCCCCeeecCCCCcceecC
Q 027118          146 EYFCESCKLFDDDTSKKQYHCDGCGICRIGG  176 (228)
Q Consensus       146 ~YfC~iCkl~Ddd~~K~~yHC~~CGICRvG~  176 (228)
                      .|.|+.|.+=.=...++-|||+.||+|-.-.
T Consensus        17 ~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~   47 (56)
T d2dkta2          17 QYHCESCGICRIGPKEDFFHCLKCNLCLTTN   47 (56)
T ss_dssp             EEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred             cccCCCCCceeecCCccccccCccccccCcc
Confidence            3666666655434467999999999997554

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=80.46  E-value=0.4  Score=33.60  Aligned_cols=35  Identities=23%  Similarity=0.632  Sum_probs=21.1

Q ss_pred             eeEcCCCCccccccccCCCCCCc--------cceEecCccccc
Q 027118          121 QVICSLCGTEQKVQQVCVNCGVC--------MGEYFCESCKLF  155 (228)
Q Consensus       121 ~VlCg~C~teQ~v~~~C~nCg~~--------Fa~YfC~iCkl~  155 (228)
                      ..-|..|...-.....||.|+.+        -+.|||..|+=.
T Consensus        18 ~~~C~~C~~~~~~~a~CPdC~~~Le~LkACGAvdYFC~~cn~L   60 (71)
T d2jnea1          18 HARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL   60 (71)
T ss_dssp             EEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred             CEehhhhhhhheeEEeCCccccHHHHHHhccchhhhhccCCce
Confidence            45555555544444455555554        367999999854