Query 027121
Match_columns 228
No_of_seqs 112 out of 469
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 1.5E-50 3.2E-55 347.4 22.5 217 11-228 9-230 (230)
2 PF02453 Reticulon: Reticulon; 100.0 2.2E-37 4.9E-42 252.9 -7.1 163 45-207 1-169 (169)
3 PF04842 DUF639: Plant protein 97.2 0.0069 1.5E-07 59.5 13.5 161 44-224 505-675 (683)
4 KOG1792 Reticulon [Intracellul 94.5 0.19 4.1E-06 43.7 7.7 79 137-215 42-143 (230)
5 PF06398 Pex24p: Integral pero 93.6 1.1 2.4E-05 41.0 11.4 23 44-66 31-53 (359)
6 PF08372 PRT_C: Plant phosphor 92.6 0.99 2.2E-05 37.0 8.5 66 125-190 72-137 (156)
7 PF08372 PRT_C: Plant phosphor 87.1 0.52 1.1E-05 38.6 2.6 29 42-70 82-110 (156)
8 COG0053 MMT1 Predicted Co/Zn/C 78.6 48 0.001 29.8 12.0 121 79-200 84-214 (304)
9 KOG1726 HVA22/DP1 gene product 73.9 60 0.0013 28.2 10.8 31 188-218 94-124 (225)
10 PF10112 Halogen_Hydrol: 5-bro 72.3 55 0.0012 27.3 10.1 70 152-222 16-96 (199)
11 PF01484 Col_cuticle_N: Nemato 71.9 17 0.00037 23.4 5.6 35 176-210 14-51 (53)
12 COG5038 Ca2+-dependent lipid-b 57.1 26 0.00057 37.2 6.1 46 56-106 157-202 (1227)
13 PF01594 UPF0118: Domain of un 54.0 1.5E+02 0.0033 26.0 11.8 42 156-197 130-171 (327)
14 PF02453 Reticulon: Reticulon; 50.0 5.1 0.00011 32.0 -0.1 27 44-70 99-125 (169)
15 PF10256 Erf4: Golgin subfamil 47.3 1.2E+02 0.0027 22.9 8.5 21 114-138 29-49 (118)
16 KOG3488 Dolichol phosphate-man 45.9 49 0.0011 23.6 4.3 35 137-171 38-72 (81)
17 PF11696 DUF3292: Protein of u 44.4 77 0.0017 31.7 6.9 51 114-165 87-141 (642)
18 KOG1889 Putative phosphoinosit 43.7 67 0.0015 31.5 6.3 81 32-112 486-576 (579)
19 PF07234 DUF1426: Protein of u 40.6 54 0.0012 24.9 4.1 25 162-186 17-41 (117)
20 PF04842 DUF639: Plant protein 40.5 4.1E+02 0.0089 27.0 11.8 37 131-167 499-538 (683)
21 PRK11677 hypothetical protein; 36.5 1.8E+02 0.0038 23.2 6.7 9 190-198 48-56 (134)
22 PF13198 DUF4014: Protein of u 36.4 1.3E+02 0.0028 21.4 5.2 21 193-213 43-63 (72)
23 PF06055 ExoD: Exopolysacchari 31.4 3.1E+02 0.0067 22.9 8.1 38 102-139 70-111 (187)
24 PF13677 MotB_plug: Membrane M 29.2 1.5E+02 0.0032 19.9 4.5 26 165-190 20-45 (58)
25 PF14800 DUF4481: Domain of un 27.5 2.8E+02 0.0061 25.2 7.1 27 183-209 111-137 (308)
26 COG3887 Predicted signaling pr 27.4 6.3E+02 0.014 25.4 10.0 64 156-223 23-87 (655)
27 COG2274 SunT ABC-type bacterio 25.8 7.2E+02 0.016 25.3 17.7 74 127-201 253-332 (709)
28 TIGR01710 typeII_sec_gspG gene 25.5 3.1E+02 0.0068 21.2 6.5 21 171-191 11-31 (134)
29 COG2165 PulG Type II secretory 24.9 2.9E+02 0.0064 20.5 6.3 41 170-210 17-58 (149)
30 PF03037 KMP11: Kinetoplastid 24.5 1.6E+02 0.0035 21.1 4.1 33 185-217 46-78 (90)
31 PHA02677 hypothetical protein; 23.9 1.5E+02 0.0033 22.6 4.1 32 169-200 5-36 (108)
32 COG2383 Uncharacterized conser 23.7 3.4E+02 0.0073 20.8 6.0 48 176-223 45-95 (109)
33 KOG3873 Sphingomyelinase famil 23.2 4.9E+02 0.011 24.6 8.0 56 147-202 342-400 (422)
34 KOG1733 Mitochondrial import i 22.9 1.5E+02 0.0033 22.1 3.9 19 202-220 32-50 (97)
35 COG4537 ComGC Competence prote 22.2 2E+02 0.0044 22.0 4.5 40 171-210 22-61 (107)
36 PRK02654 putative inner membra 21.0 3.8E+02 0.0082 25.1 6.8 14 180-193 40-53 (375)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-50 Score=347.36 Aligned_cols=217 Identities=41% Similarity=0.788 Sum_probs=207.0
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCccccccCCCcccceecccccchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 027121 11 DNEPSRP-SRTTPRPRPPRLLGSQKPIHDILGGGKVADVLLWKNITVSASLLIGMTVIWFLFEVVEYNFVTLLCHISITS 89 (228)
Q Consensus 11 ~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~lg~~~v~dlLlWrn~~~Sg~vf~~~~~~~~L~~~~~~sliSvvs~~~ll~ 89 (228)
|+++++. .++ ..++.+|+|+||.++|+.+|||+++|+++|||++.||.+|++.+++|++|...+|+.++++|+++++.
T Consensus 9 ~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~ 87 (230)
T KOG1792|consen 9 NSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLA 87 (230)
T ss_pred ccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8887884 455 88889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCC-CCC--CCC-ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHH
Q 027121 90 MLALFIWSKGAEFFNW-KPP--QIP-EVILRESTFREVASTLRVRFNKILSKLLDVACGKDPGLFILVIAILYIFSVIGT 165 (228)
Q Consensus 90 l~~~fl~~~l~~~~~k-~~~--~~p-~~~isee~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slkv~~~L~~ls~lGs 165 (228)
+.+.|.|.+...+++| +.| ..| ++++|||.+++.++.++.++|+.+.++|++++++|+.+++|+++.||+++++|+
T Consensus 88 ~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs 167 (230)
T KOG1792|consen 88 LAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGS 167 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777777 555 577 999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 027121 166 YFSFLNLLYLGFICILTVPFLYDRYDEHVDYIADREFRRMKKMFRRFNSQFLNKIPRGPVKEN 228 (228)
Q Consensus 166 ~~s~~tLl~i~~v~~FTvP~lYe~~q~~ID~~v~~~~~~i~~~~~~~~~kv~~kip~~~~~~~ 228 (228)
|||++|++|+|++++||+|.+||+|||+||++++++.++.+++|+++++|+.+|||+++.+++
T Consensus 168 ~fn~lTll~ig~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~~ 230 (230)
T KOG1792|consen 168 LFNFLTLLYIGLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKKE 230 (230)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999999999987764
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=2.2e-37 Score=252.95 Aligned_cols=163 Identities=31% Similarity=0.591 Sum_probs=46.5
Q ss_pred ccceecccccchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhhCCCC------CCCCceeeCHH
Q 027121 45 VADVLLWKNITVSASLLIGMTVIWFLFEVVEYNFVTLLCHISITSMLALFIWSKGAEFFNWKP------PQIPEVILRES 118 (228)
Q Consensus 45 v~dlLlWrn~~~Sg~vf~~~~~~~~L~~~~~~sliSvvs~~~ll~l~~~fl~~~l~~~~~k~~------~~~p~~~isee 118 (228)
|+|+|+||||++||.+|++++++|++++++++|++|++|+++++.+++.+++....+.+++.+ ++.++.+++||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 689999999999999999999999999999999999999999999999888877766666543 22347899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 027121 119 TFREVASTLRVRFNKILSKLLDVACGKDPGLFILVIAILYIFSVIGTYFSFLNLLYLGFICILTVPFLYDRYDEHVDYIA 198 (228)
Q Consensus 119 ~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slkv~~~L~~ls~lGs~~s~~tLl~i~~v~~FTvP~lYe~~q~~ID~~v 198 (228)
.++++++.+.+.+|..++.+|+++.++|+..++++++++|+++++|+++|++||++++++++||+|++||+||++||+++
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~ 160 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV 160 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027121 199 DREFRRMKK 207 (228)
Q Consensus 199 ~~~~~~i~~ 207 (228)
++++++++|
T Consensus 161 ~~~~~~~~k 169 (169)
T PF02453_consen 161 AKVKEKVKK 169 (169)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 998888764
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=97.23 E-value=0.0069 Score=59.53 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=101.8
Q ss_pred cccceecccccchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhhCCC--------CCCCC--ce
Q 027121 44 KVADVLLWKNITVSASLLIGMTVIWFLFEVVEYNFVTLLCHISITSMLALFIWSKGAEFFNWK--------PPQIP--EV 113 (228)
Q Consensus 44 ~v~dlLlWrn~~~Sg~vf~~~~~~~~L~~~~~~sliSvvs~~~ll~l~~~fl~~~l~~~~~k~--------~~~~p--~~ 113 (228)
.+.+|..|+||.+|...++..+.+.+-=| +.-+.-.+++.+++..+|....+..++. +|+-. +-
T Consensus 505 ~~~~l~~We~P~kt~~Fl~~~~~iI~r~w------l~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEq 578 (683)
T PF04842_consen 505 WLQKLASWEEPLKTLVFLALFLYIIYRGW------LGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQ 578 (683)
T ss_pred HHHHHhhccCcchhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHH
Confidence 56689999999999998877766322211 2211122222222223443322222232 11111 11
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhchhH
Q 027121 114 ILRESTFREVASTLRVRFNKILSKLLDVACGKDPGLFILVIAILYIFSVIGTYFSFLNLLYLGFICILTVPFLYDRYDEH 193 (228)
Q Consensus 114 ~isee~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slkv~~~L~~ls~lGs~~s~~tLl~i~~v~~FTvP~lYe~~q~~ 193 (228)
.+.-..+..-++......|-++-++|.|++...+..+-++++.|..++.+-..+-+--++.+.++-.||-..=+.+
T Consensus 579 ilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr---- 654 (683)
T PF04842_consen 579 ILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR---- 654 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch----
Confidence 1222234444577788889999999999999999999999999999999999999999999999988886432221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027121 194 VDYIADREFRRMKKMFRRFNSQFLNKIPRGP 224 (228)
Q Consensus 194 ID~~v~~~~~~i~~~~~~~~~kv~~kip~~~ 224 (228)
.-.++..+++++.| ..||-+|
T Consensus 655 --~s~er~~RRlrEWW--------~sIPAaP 675 (683)
T PF04842_consen 655 --ESSERFNRRLREWW--------DSIPAAP 675 (683)
T ss_pred --hhHHHHHHHHHHHH--------hhCCccc
Confidence 12345566677777 4566654
No 4
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=0.19 Score=43.70 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=65.0
Q ss_pred HHhhhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc-----------------------hhH
Q 027121 137 KLLDVACGKDPGLFILVIAILYIFSVIGTYFSFLNLLYLGFICILTVPFLYDRY-----------------------DEH 193 (228)
Q Consensus 137 ~lr~l~~~~d~~~slkv~~~L~~ls~lGs~~s~~tLl~i~~v~~FTvP~lYe~~-----------------------q~~ 193 (228)
...++++|||.+.++.+.++..++..+-..++..++..+..+.+++++.++.++ |+.
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~ 121 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF 121 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence 577999999999999999988888888888888888888888888777766555 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027121 194 VDYIADREFRRMKKMFRRFNSQ 215 (228)
Q Consensus 194 ID~~v~~~~~~i~~~~~~~~~k 215 (228)
++++...++.++|...+++++-
T Consensus 122 ~~~~a~~~~~~in~~l~~l~~i 143 (230)
T KOG1792|consen 122 VLALASSLRVEINQALSELRDI 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888877754
No 5
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=93.56 E-value=1.1 Score=40.96 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=17.8
Q ss_pred cccceecccccchhHHHHHHHHH
Q 027121 44 KVADVLLWKNITVSASLLIGMTV 66 (228)
Q Consensus 44 ~v~dlLlWrn~~~Sg~vf~~~~~ 66 (228)
.+.++++|+||..+-.++.+.+.
T Consensus 31 ~vl~il~W~~p~~t~~~L~l~t~ 53 (359)
T PF06398_consen 31 RVLRILTWTNPDYTLSFLLLYTF 53 (359)
T ss_pred HHHHeEEeCCCCcchHHHHHHHH
Confidence 57789999999987777655554
No 6
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=92.59 E-value=0.99 Score=36.98 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 027121 125 STLRVRFNKILSKLLDVACGKDPGLFILVIAILYIFSVIGTYFSFLNLLYLGFICILTVPFLYDRY 190 (228)
Q Consensus 125 ~~v~~~in~~l~~lr~l~~~~d~~~slkv~~~L~~ls~lGs~~s~~tLl~i~~v~~FTvP~lYe~~ 190 (228)
+.+...+....+.++.++.++|+..|..+.+++++.+.+-....+..++.+..+..|+=|++-...
T Consensus 72 Q~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~ 137 (156)
T PF08372_consen 72 QNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL 137 (156)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence 334444555667899999999999999999999888888888788777777777777877776643
No 7
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=87.10 E-value=0.52 Score=38.60 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=23.4
Q ss_pred CCcccceecccccchhHHHHHHHHHHHHH
Q 027121 42 GGKVADVLLWKNITVSASLLIGMTVIWFL 70 (228)
Q Consensus 42 ~~~v~dlLlWrn~~~Sg~vf~~~~~~~~L 70 (228)
|+++..++.||||..|++..++.+++.+.
T Consensus 82 gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 82 GERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 46899999999999999988877664333
No 8
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=78.57 E-value=48 Score=29.83 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCce--------eeCHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhHH
Q 027121 79 VTLLCHISITSMLALFIWSKGAEFFNWKPPQIPEV--------ILRESTFREVASTLRVRFNKILSKLLDVACGKDPGLF 150 (228)
Q Consensus 79 iSvvs~~~ll~l~~~fl~~~l~~~~~k~~~~~p~~--------~isee~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~s 150 (228)
.+++.-++++..++..+|..+...++..+++.+.. .+..+.+.+....+....|.-.-..-..-.--|...+
T Consensus 84 ~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts 163 (304)
T COG0053 84 ASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTS 163 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHH
Confidence 44444444444444456666666665333332211 1222333333334444443322222222222377777
Q ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHH-HHHhhchhHHHHHHHH
Q 027121 151 ILVIAILYIFSVIG-TYFSFLNLLYLGFICILTVP-FLYDRYDEHVDYIADR 200 (228)
Q Consensus 151 lkv~~~L~~ls~lG-s~~s~~tLl~i~~v~~FTvP-~lYe~~q~~ID~~v~~ 200 (228)
+.+++++- ..+.| .|++...=+.+++..+.+.- .+++.-++.+|+.+..
T Consensus 164 ~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~ 214 (304)
T COG0053 164 LAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDP 214 (304)
T ss_pred HHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCH
Confidence 77777766 66777 55666666666666555554 5677777777744433
No 9
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=73.88 E-value=60 Score=28.23 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=23.6
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027121 188 DRYDEHVDYIADREFRRMKKMFRRFNSQFLN 218 (228)
Q Consensus 188 e~~q~~ID~~v~~~~~~i~~~~~~~~~kv~~ 218 (228)
.+||++||+.+..++++.-++...+-.|.++
T Consensus 94 s~~E~eid~~l~~~k~~~~~~a~~~~~r~l~ 124 (225)
T KOG1726|consen 94 SKHEEEIDRMLVEAKERVYDAAVSILKRALN 124 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999988887776666555544
No 10
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=72.27 E-value=55 Score=27.27 Aligned_cols=70 Identities=23% Similarity=0.319 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027121 152 LVIAILYIFSVIGTYFSFLNLLYLGFICILTVPFLYDRYDEHV-----------DYIADREFRRMKKMFRRFNSQFLNKI 220 (228)
Q Consensus 152 kv~~~L~~ls~lGs~~s~~tLl~i~~v~~FTvP~lYe~~q~~I-----------D~~v~~~~~~i~~~~~~~~~kv~~ki 220 (228)
-+++..|++++.|.-.+++.-+.+|+++.+.+.....+++..- .+++....++.++++++++ +...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~-~~~~~i 94 (199)
T PF10112_consen 16 LIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIE-KAIKRI 94 (199)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHc
Confidence 3455666667666666666666666666655554444332221 1234444555555555554 444555
Q ss_pred CC
Q 027121 221 PR 222 (228)
Q Consensus 221 p~ 222 (228)
++
T Consensus 95 ~~ 96 (199)
T PF10112_consen 95 RD 96 (199)
T ss_pred CC
Confidence 54
No 11
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=71.86 E-value=17 Score=23.36 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHHHH
Q 027121 176 GFICILTVPFLYDR---YDEHVDYIADREFRRMKKMFR 210 (228)
Q Consensus 176 ~~v~~FTvP~lYe~---~q~~ID~~v~~~~~~i~~~~~ 210 (228)
.+.+++++|.+|.. -|++++.-++..+...++.|+
T Consensus 14 i~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W~ 51 (53)
T PF01484_consen 14 ILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDAWN 51 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567889999864 445556666666666666554
No 12
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=57.10 E-value=26 Score=37.18 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 027121 56 VSASLLIGMTVIWFLFEVVEYNFVTLLCHISITSMLALFIWSKGAEFFNWK 106 (228)
Q Consensus 56 ~Sg~vf~~~~~~~~L~~~~~~sliSvvs~~~ll~l~~~fl~~~l~~~~~k~ 106 (228)
-++++|++..+.|++ +|.-+++.+. +++++...++|+.-...+.|.
T Consensus 157 s~~i~l~~~v~Swif----g~~~fs~~sl-ffii~~~~~vY~~~~~rv~rn 202 (1227)
T COG5038 157 SVAIVLIGSVASWIF----GYLGFSFASL-FFIILVTMYVYRTCIKRVRRN 202 (1227)
T ss_pred hhhHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 456667666665543 3444443332 334445556777655555443
No 13
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=54.00 E-value=1.5e+02 Score=25.96 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 027121 156 ILYIFSVIGTYFSFLNLLYLGFICILTVPFLYDRYDEHVDYI 197 (228)
Q Consensus 156 ~L~~ls~lGs~~s~~tLl~i~~v~~FTvP~lYe~~q~~ID~~ 197 (228)
.-++.+.+++..+...=+.+..+..|-.=.=.++.++.+.+.
T Consensus 130 ~~~~~~~~~~~~~~l~~~~i~l~~~~~~l~~~~~~~~~~~~~ 171 (327)
T PF01594_consen 130 LSSLSSFISSIFSFLFNFFIFLIFLFFFLLDGEKLRRFLIRL 171 (327)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 334444454444444333333333333333333333334333
No 14
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=50.00 E-value=5.1 Score=31.98 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=12.7
Q ss_pred cccceecccccchhHHHHHHHHHHHHH
Q 027121 44 KVADVLLWKNITVSASLLIGMTVIWFL 70 (228)
Q Consensus 44 ~v~dlLlWrn~~~Sg~vf~~~~~~~~L 70 (228)
...+++.|+|++.+..++++..++..+
T Consensus 99 ~~~~l~~~~~~~~~l~~~~~l~~l~~l 125 (169)
T PF02453_consen 99 WLRRLVFGEDPKKSLKVFVVLYILSFL 125 (169)
T ss_dssp HHHCCCHCT-TTGGG------------
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 577999999999999987766554333
No 15
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=47.32 E-value=1.2e+02 Score=22.87 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=13.3
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHH
Q 027121 114 ILRESTFREVASTLRVRFNKILSKL 138 (228)
Q Consensus 114 ~isee~v~~~~~~v~~~in~~l~~l 138 (228)
.|+++..+ .+...+|..+...
T Consensus 29 ~is~~ef~----~iI~~IN~~l~~a 49 (118)
T PF10256_consen 29 YISPEEFE----EIINTINQILKEA 49 (118)
T ss_pred CCCHHHHH----HHHHHHHHHHHHH
Confidence 37777776 4555777765544
No 16
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=45.87 E-value=49 Score=23.60 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHhhhhccCChhHHHHHHHHHHHHHHHHHHhHHHH
Q 027121 137 KLLDVACGKDPGLFILVIAILYIFSVIGTYFSFLN 171 (228)
Q Consensus 137 ~lr~l~~~~d~~~slkv~~~L~~ls~lGs~~s~~t 171 (228)
..++.++-+++.-+.-++++++.+..+|-++|...
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999999999998877653
No 17
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=44.41 E-value=77 Score=31.71 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=33.7
Q ss_pred eeCHHH----HHHHHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHH
Q 027121 114 ILREST----FREVASTLRVRFNKILSKLLDVACGKDPGLFILVIAILYIFSVIGT 165 (228)
Q Consensus 114 ~isee~----v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slkv~~~L~~ls~lGs 165 (228)
+.|.+. ++++--.|...+-.+...+.||-+|++.+.|..++++ |+++|+-.
T Consensus 87 ~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~v-Yf~aW~~d 141 (642)
T PF11696_consen 87 EFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAV-YFIAWLLD 141 (642)
T ss_pred cCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHH-HHHHHHHH
Confidence 445444 4444445666677788899999999999998766554 44444433
No 18
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=43.71 E-value=67 Score=31.50 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=51.0
Q ss_pred CCCccccccCCCcccceec----------ccccchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHh
Q 027121 32 SQKPIHDILGGGKVADVLL----------WKNITVSASLLIGMTVIWFLFEVVEYNFVTLLCHISITSMLALFIWSKGAE 101 (228)
Q Consensus 32 ~~~~~~~~lg~~~v~dlLl----------Wrn~~~Sg~vf~~~~~~~~L~~~~~~sliSvvs~~~ll~l~~~fl~~~l~~ 101 (228)
||++.+-+||+=.+.+... |+--...++...+..++...+.+..-+++-.+-+...+++...+++....+
T Consensus 486 rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~i~lva~~m~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g~~ 565 (579)
T KOG1889|consen 486 RQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPIIFLVALSMFIISLLFSTPNLLYRLFWFAIMVVSIAVILINGDQ 565 (579)
T ss_pred ccchHHHhcCCcccccccccCCCcccccCceeehhhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhheechHH
Confidence 7889999999888888775 555555444444333322222233456666666666666666666667778
Q ss_pred hhCCCCCCCCc
Q 027121 102 FFNWKPPQIPE 112 (228)
Q Consensus 102 ~~~k~~~~~p~ 112 (228)
++||+....|.
T Consensus 566 fvnwPrl~~p~ 576 (579)
T KOG1889|consen 566 FVNWPRLVLPQ 576 (579)
T ss_pred hcCCccccCcc
Confidence 99997665553
No 19
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=40.63 E-value=54 Score=24.92 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 027121 162 VIGTYFSFLNLLYLGFICILTVPFL 186 (228)
Q Consensus 162 ~lGs~~s~~tLl~i~~v~~FTvP~l 186 (228)
++|.+|-..|++|+-..++|-+|+-
T Consensus 17 F~~AIFiAItIlYILLalL~EvPkY 41 (117)
T PF07234_consen 17 FFGAIFIAITILYILLALLFEVPKY 41 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3577777789999999999999974
No 20
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=40.45 E-value=4.1e+02 Score=26.95 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhhccCChhHHHHHHHHH-HHHH--HHHHHh
Q 027121 131 FNKILSKLLDVACGKDPGLFILVIAIL-YIFS--VIGTYF 167 (228)
Q Consensus 131 in~~l~~lr~l~~~~d~~~slkv~~~L-~~ls--~lGs~~ 167 (228)
+.....+++.|..|||+..|+-++++. |++. |+|..|
T Consensus 499 l~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~ 538 (683)
T PF04842_consen 499 LIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIF 538 (683)
T ss_pred HHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 355677899999999999998765533 3332 444443
No 21
>PRK11677 hypothetical protein; Provisional
Probab=36.48 E-value=1.8e+02 Score=23.20 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=4.1
Q ss_pred chhHHHHHH
Q 027121 190 YDEHVDYIA 198 (228)
Q Consensus 190 ~q~~ID~~v 198 (228)
||.++..|.
T Consensus 48 YkqeV~~HF 56 (134)
T PRK11677 48 YRQELVSHF 56 (134)
T ss_pred HHHHHHHHH
Confidence 444444444
No 22
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=36.37 E-value=1.3e+02 Score=21.41 Aligned_cols=21 Identities=5% Similarity=0.003 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027121 193 HVDYIADREFRRMKKMFRRFN 213 (228)
Q Consensus 193 ~ID~~v~~~~~~i~~~~~~~~ 213 (228)
.+...++.....+.+..++++
T Consensus 43 ~~E~l~e~Y~~~~w~~F~~Lh 63 (72)
T PF13198_consen 43 IIEPLFELYKDWFWNPFNALH 63 (72)
T ss_pred HHHHHHHHHHHHHHHhHHHHh
Confidence 344444444444444444444
No 23
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=31.41 E-value=3.1e+02 Score=22.87 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=27.4
Q ss_pred hhCCCCCCCC----ceeeCHHHHHHHHHHHHHHHHHHHHHHh
Q 027121 102 FFNWKPPQIP----EVILRESTFREVASTLRVRFNKILSKLL 139 (228)
Q Consensus 102 ~~~k~~~~~p----~~~isee~v~~~~~~v~~~in~~l~~lr 139 (228)
.++++.+-.| +.+++++.++++.+.+.+.....-...|
T Consensus 70 ~~Gr~~~WLP~~l~~r~i~~~~l~~~~~~~~p~~~~ler~~r 111 (187)
T PF06055_consen 70 LLGRRHPWLPKFLRRRSISREKLRKAVRRLRPWLRRLERLLR 111 (187)
T ss_pred HcCCCCCCCChHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677766667 6689999999888877777766555444
No 24
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=29.24 E-value=1.5e+02 Score=19.88 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhc
Q 027121 165 TYFSFLNLLYLGFICILTVPFLYDRY 190 (228)
Q Consensus 165 s~~s~~tLl~i~~v~~FTvP~lYe~~ 190 (228)
++-++.||+..-|++++.+-.+=+..
T Consensus 20 tyaDlmTLLl~fFVlL~s~s~~d~~k 45 (58)
T PF13677_consen 20 TYADLMTLLLAFFVLLFSMSSVDKEK 45 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34488899998888888776554443
No 25
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=27.52 E-value=2.8e+02 Score=25.24 Aligned_cols=27 Identities=7% Similarity=0.247 Sum_probs=17.2
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHH
Q 027121 183 VPFLYDRYDEHVDYIADREFRRMKKMF 209 (228)
Q Consensus 183 vP~lYe~~q~~ID~~v~~~~~~i~~~~ 209 (228)
+=.+.+..|.++..-.+....++|+++
T Consensus 111 l~lv~~~~~rKlN~n~D~rLa~vN~~L 137 (308)
T PF14800_consen 111 LILVFMRHQRKLNMNTDVRLAAVNEAL 137 (308)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 335566667776666666666676655
No 26
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=27.35 E-value=6.3e+02 Score=25.40 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=36.0
Q ss_pred HHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027121 156 ILYIFSV-IGTYFSFLNLLYLGFICILTVPFLYDRYDEHVDYIADREFRRMKKMFRRFNSQFLNKIPRG 223 (228)
Q Consensus 156 ~L~~ls~-lGs~~s~~tLl~i~~v~~FTvP~lYe~~q~~ID~~v~~~~~~i~~~~~~~~~kv~~kip~~ 223 (228)
.+-++++ -|+|.+...++.++++..|.+=..+.-||+..-.+++....++++.. +..+..+|-|
T Consensus 23 iliiv~f~~~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~ls~~~~~~~----~~al~nmPiG 87 (655)
T COG3887 23 ILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYLSYQAEKSL----EEALTNMPIG 87 (655)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCce
Confidence 3334443 35555555555555555565555555666555557777666665544 4455666654
No 27
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=25.79 E-value=7.2e+02 Score=25.29 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhhhccC------ChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 027121 127 LRVRFNKILSKLLDVACGK------DPGLFILVIAILYIFSVIGTYFSFLNLLYLGFICILTVPFLYDRYDEHVDYIADR 200 (228)
Q Consensus 127 v~~~in~~l~~lr~l~~~~------d~~~slkv~~~L~~ls~lGs~~s~~tLl~i~~v~~FTvP~lYe~~q~~ID~~v~~ 200 (228)
+...++. ++..|+.+.+. |...++-.++++|..++-=.++....+...+.+.....|.+-+++++++....+.
T Consensus 253 ~~sR~~e-l~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~ 331 (709)
T COG2274 253 IISRVRE-LEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQ 331 (709)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433 44555555553 3333334444555555555556666666666777777888888999888866544
Q ss_pred H
Q 027121 201 E 201 (228)
Q Consensus 201 ~ 201 (228)
-
T Consensus 332 ~ 332 (709)
T COG2274 332 Q 332 (709)
T ss_pred h
Confidence 3
No 28
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=25.46 E-value=3.1e+02 Score=21.22 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhhch
Q 027121 171 NLLYLGFICILTVPFLYDRYD 191 (228)
Q Consensus 171 tLl~i~~v~~FTvP~lYe~~q 191 (228)
.+.++|++.++.+|.+....+
T Consensus 11 vlaIigil~~i~~p~~~~~~~ 31 (134)
T TIGR01710 11 VLVILGLLAALVAPKLFSQAD 31 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778887665433
No 29
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.91 E-value=2.9e+02 Score=20.49 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHHHHHHHH
Q 027121 170 LNLLYLGFICILTVPFLYDRYDEH-VDYIADREFRRMKKMFR 210 (228)
Q Consensus 170 ~tLl~i~~v~~FTvP~lYe~~q~~-ID~~v~~~~~~i~~~~~ 210 (228)
..+.++|++++..+|.+....+.. ..+........++.+.+
T Consensus 17 Vvl~Iigil~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (149)
T COG2165 17 VVLAIIGILAALALPSLQGSIDKAKRLEAAQQALRVIRLALE 58 (149)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888999887776666 44444444444444433
No 30
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=24.45 E-value=1.6e+02 Score=21.07 Aligned_cols=33 Identities=15% Similarity=0.382 Sum_probs=24.2
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027121 185 FLYDRYDEHVDYIADREFRRMKKMFRRFNSQFL 217 (228)
Q Consensus 185 ~lYe~~q~~ID~~v~~~~~~i~~~~~~~~~kv~ 217 (228)
--|++++.-|..+-++...+..++-+.++.|+-
T Consensus 46 ehyekfe~miqehtdkfnkkm~ehsehfk~kfa 78 (90)
T PF03037_consen 46 EHYEKFERMIQEHTDKFNKKMHEHSEHFKHKFA 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888887777777777766653
No 31
>PHA02677 hypothetical protein; Provisional
Probab=23.93 E-value=1.5e+02 Score=22.65 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 027121 169 FLNLLYLGFICILTVPFLYDRYDEHVDYIADR 200 (228)
Q Consensus 169 ~~tLl~i~~v~~FTvP~lYe~~q~~ID~~v~~ 200 (228)
++-|+|...+.=..+|.+.||-+.|=|++..-
T Consensus 5 FLilCYFILIFNIiVP~I~EKlR~E~~Af~ky 36 (108)
T PHA02677 5 FLIICYFVLIFNILVPGIFEKLRQEHAAFDRL 36 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888889999999999999988654
No 32
>COG2383 Uncharacterized conserved protein [Function unknown]
Probab=23.70 E-value=3.4e+02 Score=20.77 Aligned_cols=48 Identities=4% Similarity=0.009 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhchhHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 027121 176 GFICILTVPFLYDRYDEHVD---YIADREFRRMKKMFRRFNSQFLNKIPRG 223 (228)
Q Consensus 176 ~~v~~FTvP~lYe~~q~~ID---~~v~~~~~~i~~~~~~~~~kv~~kip~~ 223 (228)
.+++++++...|-.|.-.|. ..+....+...++..-+.+|++..+|.+
T Consensus 45 ~liGvyilsl~~La~~GVItin~~al~~L~~~a~~~~~~l~dkiig~lp~a 95 (109)
T COG2383 45 LLIGVYILSLFWLAQYGVITINWEALFNLAESATRQTGSLADKIIGILPFA 95 (109)
T ss_pred HHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHhhhHHHHHHhcCcch
Confidence 34445555555555444432 2222333334446677889999999975
No 33
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=23.16 E-value=4.9e+02 Score=24.56 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH--HHhhchhHHHHHHHHHH
Q 027121 147 PGLFILVIAILYIFSVIGTYFSFLNLLY-LGFICILTVPF--LYDRYDEHVDYIADREF 202 (228)
Q Consensus 147 ~~~slkv~~~L~~ls~lGs~~s~~tLl~-i~~v~~FTvP~--lYe~~q~~ID~~v~~~~ 202 (228)
....+.+++++.++....-|++...+++ ++...+||+-. ..---|.+|-..++.+.
T Consensus 342 ~iL~i~~av~~~~~~~~~lw~~v~~l~f~i~~~~a~~V~G~i~f~~~~~ei~~~lEr~~ 400 (422)
T KOG3873|consen 342 RILYISAAVFLAVLAVLLLWFTVFVLMFTIFLLIAFTVFGVIGFLVGQAEIWNLLERNG 400 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhheecceeeeeeHHHHHHHHHHHH
Confidence 3333444444444444444554443333 33336676665 34556888888888754
No 34
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.90 E-value=1.5e+02 Score=22.13 Aligned_cols=19 Identities=5% Similarity=0.287 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 027121 202 FRRMKKMFRRFNSQFLNKI 220 (228)
Q Consensus 202 ~~~i~~~~~~~~~kv~~ki 220 (228)
...+.++++++.|||++|=
T Consensus 32 vAnAqeLv~kisekCf~KC 50 (97)
T KOG1733|consen 32 VANAQELVSKISEKCFDKC 50 (97)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3446677888888888873
No 35
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=22.21 E-value=2e+02 Score=21.96 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 027121 171 NLLYLGFICILTVPFLYDRYDEHVDYIADREFRRMKKMFR 210 (228)
Q Consensus 171 tLl~i~~v~~FTvP~lYe~~q~~ID~~v~~~~~~i~~~~~ 210 (228)
-|+++.++++.++|-+-.+++..=|.=.+.....++.|.+
T Consensus 22 VLlIISiLlLl~iPNltKq~~~i~~kGc~A~vkmV~sQ~~ 61 (107)
T COG4537 22 VLLIISILLLLFIPNLTKQKEVIQDKGCEAVVKMVESQAE 61 (107)
T ss_pred HHHHHHHHHHHHccchhhhHHHHhcchHHHHHHHHHHHHH
Confidence 4667788888999999888776666544444445555544
No 36
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=21.03 E-value=3.8e+02 Score=25.06 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=10.2
Q ss_pred HHHHHHHHhhchhH
Q 027121 180 ILTVPFLYDRYDEH 193 (228)
Q Consensus 180 ~FTvP~lYe~~q~~ 193 (228)
+.+.|.-+.+++..
T Consensus 40 lIL~PLsikQ~KS~ 53 (375)
T PRK02654 40 FALYPLSAGSIRNM 53 (375)
T ss_pred HHHHHhHHHHHHHH
Confidence 46789888877654
Done!