Query 027121
Match_columns 228
No_of_seqs 112 out of 469
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.4 3E-08 1E-12 70.9 0.5 58 95-152 15-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.8 3.3E-07 1.1E-11 62.3 -4.8 51 96-146 3-60 (60)
3 2l8s_A Integrin alpha-1; trans 39.1 62 0.0021 20.8 4.8 29 79-109 14-42 (54)
4 2knc_A Integrin alpha-IIB; tra 37.8 65 0.0022 20.7 4.7 29 79-109 17-45 (54)
5 1w53_A Phosphoserine phosphata 27.1 71 0.0024 22.4 3.8 37 182-218 3-39 (84)
6 2k1a_A Integrin alpha-IIB; sin 24.3 1.1E+02 0.0037 18.6 3.8 27 79-107 15-41 (42)
7 1oef_A Apolipoprotein E; glyco 23.4 40 0.0014 18.0 1.6 21 194-214 3-23 (26)
8 2nqb_D Histone H2B; nucleosome 21.1 2.6E+02 0.009 20.9 6.4 43 94-143 38-80 (123)
9 1tzy_B Histone H2B; histone-fo 19.9 2.9E+02 0.0098 20.8 6.4 43 94-143 41-83 (126)
10 3ci9_A Heat shock factor-bindi 19.2 1.5E+02 0.0053 18.4 3.9 29 192-220 5-33 (48)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.44 E-value=3e-08 Score=70.89 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=54.8
Q ss_pred HHHHHHhhhCCCCCCCC-------ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhHHHH
Q 027121 95 IWSKGAEFFNWKPPQIP-------EVILRESTFREVASTLRVRFNKILSKLLDVACGKDPGLFIL 152 (228)
Q Consensus 95 l~~~l~~~~~k~~~~~p-------~~~isee~v~~~~~~v~~~in~~l~~lr~l~~~~d~~~slk 152 (228)
+|+.+.+.++|+...+| |+.+|+|.+++.++.+...+|.+++++|+|++++|+.+|+|
T Consensus 15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 89999999999988888 88999999999999999999999999999999999999875
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.79 E-value=3.3e-07 Score=62.32 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=43.9
Q ss_pred HHHHHhhhCCCCCCCC-------ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 027121 96 WSKGAEFFNWKPPQIP-------EVILRESTFREVASTLRVRFNKILSKLLDVACGKD 146 (228)
Q Consensus 96 ~~~l~~~~~k~~~~~p-------~~~isee~v~~~~~~v~~~in~~l~~lr~l~~~~d 146 (228)
|+.+.+.++|+...+| |+.+|+|.+++.++.+..++|.+++++|+|++++|
T Consensus 3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 3455566677665566 88999999999999999999999999999999987
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=39.13 E-value=62 Score=20.84 Aligned_cols=29 Identities=17% Similarity=0.427 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 027121 79 VTLLCHISITSMLALFIWSKGAEFFNWKPPQ 109 (228)
Q Consensus 79 iSvvs~~~ll~l~~~fl~~~l~~~~~k~~~~ 109 (228)
+++++-++++++++..+|+. ++|+|..++
T Consensus 14 ~svl~GLLLL~Lii~~LwK~--GFFKR~~~~ 42 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWKI--GFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHc--CcccCCCcc
Confidence 45555666666666567754 788887654
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.83 E-value=65 Score=20.72 Aligned_cols=29 Identities=28% Similarity=0.593 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 027121 79 VTLLCHISITSMLALFIWSKGAEFFNWKPPQ 109 (228)
Q Consensus 79 iSvvs~~~ll~l~~~fl~~~l~~~~~k~~~~ 109 (228)
+++++-++++++++..+|+. ++|+|..++
T Consensus 17 ~svl~GLllL~li~~~LwK~--GFFkR~~~~ 45 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWKV--GFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHTTTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHc--CcccCCCCC
Confidence 45555555555555556754 788887554
No 5
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=27.06 E-value=71 Score=22.40 Aligned_cols=37 Identities=8% Similarity=0.087 Sum_probs=28.4
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027121 182 TVPFLYDRYDEHVDYIADREFRRMKKMFRRFNSQFLN 218 (228)
Q Consensus 182 TvP~lYe~~q~~ID~~v~~~~~~i~~~~~~~~~kv~~ 218 (228)
+.+.+.++|++.+|.++..-.++.-.+-+++..+++.
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~ie 39 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIE 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHHH
Confidence 3567889999999999988777776777777766544
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=24.26 E-value=1.1e+02 Score=18.57 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 027121 79 VTLLCHISITSMLALFIWSKGAEFFNWKP 107 (228)
Q Consensus 79 iSvvs~~~ll~l~~~fl~~~l~~~~~k~~ 107 (228)
+++++-++++++++..+|+. ++++|..
T Consensus 15 ~s~l~GLllL~li~~~LwK~--GFFkR~~ 41 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWKV--GFFKRNR 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHc--CcccCCC
Confidence 44555555555555556643 6777653
No 7
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=23.41 E-value=40 Score=18.04 Aligned_cols=21 Identities=5% Similarity=0.192 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027121 194 VDYIADREFRRMKKMFRRFNS 214 (228)
Q Consensus 194 ID~~v~~~~~~i~~~~~~~~~ 214 (228)
++++.+.++.++.+.++++.+
T Consensus 3 ~~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHh
Confidence 456777777777777766653
No 8
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=21.15 E-value=2.6e+02 Score=20.88 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=28.9
Q ss_pred HHHHHHHhhhCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027121 94 FIWSKGAEFFNWKPPQIPEVILRESTFREVASTLRVRFNKILSKLLDVAC 143 (228)
Q Consensus 94 fl~~~l~~~~~k~~~~~p~~~isee~v~~~~~~v~~~in~~l~~lr~l~~ 143 (228)
++|..+-|. +||..||.+.+.-+...+.+.++++....-+|..
T Consensus 38 YIyKVLKQV-------hpd~gISskAm~ImnSfvnDiferIA~EAs~La~ 80 (123)
T 2nqb_D 38 YIYTVLKQV-------HPDTGISSKAMSIMNSFVNDIFERIAAEASRLAH 80 (123)
T ss_dssp HHHHHHHHH-------CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544 7888899987777666666666666666555554
No 9
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=19.90 E-value=2.9e+02 Score=20.78 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=28.6
Q ss_pred HHHHHHHhhhCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027121 94 FIWSKGAEFFNWKPPQIPEVILRESTFREVASTLRVRFNKILSKLLDVAC 143 (228)
Q Consensus 94 fl~~~l~~~~~k~~~~~p~~~isee~v~~~~~~v~~~in~~l~~lr~l~~ 143 (228)
++|..+-+. +||..||.+.+.-+...+.+.++.+....-+|..
T Consensus 41 YIyKVLKQV-------hpd~gISskAm~ImnSfvnDiferIA~EAs~La~ 83 (126)
T 1tzy_B 41 YVYKVLKQV-------HPDTGISSKAMGIMNSFVNDIFERIAGEASRLAH 83 (126)
T ss_dssp HHHHHHHHH-------CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665544 7888899987776666666666666665555544
No 10
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=19.19 E-value=1.5e+02 Score=18.41 Aligned_cols=29 Identities=14% Similarity=0.430 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027121 192 EHVDYIADREFRRMKKMFRRFNSQFLNKI 220 (228)
Q Consensus 192 ~~ID~~v~~~~~~i~~~~~~~~~kv~~ki 220 (228)
.++-.+++....++++.++.+...++.||
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~ri 33 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRI 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544
Done!