Query 027121
Match_columns 228
No_of_seqs 112 out of 469
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 08:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027121hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5za1 a.4.5.4 (A:138-206) Ca 30.5 40 0.0029 20.3 4.6 31 112-142 27-57 (69)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 17.2 55 0.004 17.7 2.7 20 171-190 15-34 (37)
3 d2je6a2 d.101.1.1 (A:192-275) 16.7 87 0.0063 19.3 4.3 25 191-215 57-81 (84)
4 d1kqfb2 f.23.22.1 (B:246-290) 16.3 33 0.0024 19.8 1.7 19 48-66 5-23 (45)
5 d1h2vc1 a.118.1.14 (C:29-290) 15.4 2.2E+02 0.016 21.5 7.3 30 176-205 142-175 (262)
6 d1tzyb_ a.22.1.1 (B:) Histone 14.5 1.6E+02 0.011 19.2 6.4 44 93-143 7-50 (92)
7 d2nn6e2 d.101.1.1 (E:192-285) 12.7 1.5E+02 0.011 18.6 4.7 27 190-216 57-83 (94)
8 d2gaua1 a.4.5.4 (A:152-232) Tr 11.2 1.4E+02 0.01 17.9 4.0 31 112-142 27-57 (81)
9 d1cjba_ c.61.1.1 (A:) Hypoxant 10.5 34 0.0025 26.1 0.7 30 180-209 28-64 (228)
10 d1w53a_ a.186.1.2 (A:) Phospho 10.5 1.2E+02 0.0085 19.6 3.4 34 185-218 6-39 (84)
No 1
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.53 E-value=40 Score=20.33 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=27.7
Q ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027121 112 EVILRESTFREVASTLRVRFNKILSKLLDVA 142 (228)
Q Consensus 112 ~~~isee~v~~~~~~v~~~in~~l~~lr~l~ 142 (228)
.+.++++.+-+++..-++.+|..++.+++--
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~g 57 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQN 57 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999988743
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.18 E-value=55 Score=17.73 Aligned_cols=20 Identities=40% Similarity=0.889 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 027121 171 NLLYLGFICILTVPFLYDRY 190 (228)
Q Consensus 171 tLl~i~~v~~FTvP~lYe~~ 190 (228)
|-+|.|.++.|.+-.++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44566666666666655544
No 3
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=16.70 E-value=87 Score=19.26 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 027121 191 DEHVDYIADREFRRMKKMFRRFNSQ 215 (228)
Q Consensus 191 q~~ID~~v~~~~~~i~~~~~~~~~k 215 (228)
.++|++.++.+.+..++..+.+++.
T Consensus 57 ~~~i~~~i~~A~~~~~~l~~~l~~~ 81 (84)
T d2je6a2 57 LQDIDQAENTARSTAVKLLEELKKH 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999888888643
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=16.26 E-value=33 Score=19.82 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=13.4
Q ss_pred eecccccchhHHHHHHHHH
Q 027121 48 VLLWKNITVSASLLIGMTV 66 (228)
Q Consensus 48 lLlWrn~~~Sg~vf~~~~~ 66 (228)
+=+||+..+....++.+.+
T Consensus 5 V~lWKgv~Kpl~~~~~~~~ 23 (45)
T d1kqfb2 5 VSLWKGALKPLAAAGFIAT 23 (45)
T ss_dssp HHHHHTTHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHH
Confidence 3478888888777766655
No 5
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.37 E-value=2.2e+02 Score=21.46 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=19.3
Q ss_pred HHHHHHHHH----HHHhhchhHHHHHHHHHHHHH
Q 027121 176 GFICILTVP----FLYDRYDEHVDYIADREFRRM 205 (228)
Q Consensus 176 ~~v~~FTvP----~lYe~~q~~ID~~v~~~~~~i 205 (228)
+...+-++| .+|++++++.|+.++.+...+
T Consensus 142 ~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~ 175 (262)
T d1h2vc1 142 VYAFLSSLPWVGKELYEKKDAEMDRIFANTESYL 175 (262)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 334555555 367788888888877765544
No 6
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=14.53 E-value=1.6e+02 Score=19.17 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027121 93 LFIWSKGAEFFNWKPPQIPEVILRESTFREVASTLRVRFNKILSKLLDVAC 143 (228)
Q Consensus 93 ~fl~~~l~~~~~k~~~~~p~~~isee~v~~~~~~v~~~in~~l~~lr~l~~ 143 (228)
.++++.+-+. +|+..||...+.-+-..+.+..++...+.-+|..
T Consensus 7 ~Yi~kVLKqV-------hp~~giS~kam~imnsfvndiferIa~EA~~La~ 50 (92)
T d1tzyb_ 7 IYVYKVLKQV-------HPDTGISSKAMGIMNSFVNDIFERIAGEASRLAH 50 (92)
T ss_dssp HHHHHHHHHH-------CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-------CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666554 8899999987766655555666666665555543
No 7
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.69 E-value=1.5e+02 Score=18.64 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027121 190 YDEHVDYIADREFRRMKKMFRRFNSQF 216 (228)
Q Consensus 190 ~q~~ID~~v~~~~~~i~~~~~~~~~kv 216 (228)
..++|++.++.+....++..+.+++.+
T Consensus 57 ~~~~i~~~i~~A~~~~~el~~~l~~~L 83 (94)
T d2nn6e2 57 DPESIFEMMETGKRVGKVLHASLQSVV 83 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999998888888887554
No 8
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=11.17 E-value=1.4e+02 Score=17.87 Aligned_cols=31 Identities=10% Similarity=0.136 Sum_probs=26.4
Q ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027121 112 EVILRESTFREVASTLRVRFNKILSKLLDVA 142 (228)
Q Consensus 112 ~~~isee~v~~~~~~v~~~in~~l~~lr~l~ 142 (228)
.+.++++.+-+++..-.+.+|..+..+++--
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~g 57 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSER 57 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5678899999999999999999999988743
No 9
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=10.53 E-value=34 Score=26.15 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=19.6
Q ss_pred HHHHHHHHhhc-------hhHHHHHHHHHHHHHHHHH
Q 027121 180 ILTVPFLYDRY-------DEHVDYIADREFRRMKKMF 209 (228)
Q Consensus 180 ~FTvP~lYe~~-------q~~ID~~v~~~~~~i~~~~ 209 (228)
+|++|..|++| +++|.+.+++.-.++.+.|
T Consensus 28 ~f~~p~~y~~~~~~Vli~~~~I~~rI~rLA~eI~~~y 64 (228)
T d1cjba_ 28 SFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVY 64 (228)
T ss_dssp GSCCCTTTGGGEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hccCccchhccccEEecCHHHHHHHHHHHHHHHHHHc
Confidence 58899999887 4456666666555554443
No 10
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.52 E-value=1.2e+02 Score=19.57 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=21.8
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027121 185 FLYDRYDEHVDYIADREFRRMKKMFRRFNSQFLN 218 (228)
Q Consensus 185 ~lYe~~q~~ID~~v~~~~~~i~~~~~~~~~kv~~ 218 (228)
.+.++|++.++.++..--++.-..-+++..+++.
T Consensus 6 ~~~~~Y~~iL~~Yl~~~~E~~Ly~~~~fsre~ie 39 (84)
T d1w53a_ 6 VIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIE 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3567899999988866554444455556555544
Done!