BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027123
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 76/154 (49%), Gaps = 28/154 (18%)
Query: 14 YDN-NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSD-LVFPKGGWENDETVM 71
YD F+ + C+ +R E ED EVL+VSS D + P GG E +E
Sbjct: 4 YDREGFKKRAACLCFR------SEQED-----EVLLVSSSRYPDQWIVPGGGMEPEEEPG 52
Query: 72 EAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPE 131
AA RE EEAGV+GKL + LGI+E + + R Y++ L VTE LE W +
Sbjct: 53 GAAVREVYEEAGVKGKLG-RLLGIFENQDRKH----------RTYVYVLTVTEILEDWED 101
Query: 132 QEN--RYRKWLNIQDAFQL--CRYEWMREALEKF 161
N R R+W ++DA ++ C E LEK
Sbjct: 102 SVNIGRKREWFKVEDAIKVLQCHKPVHAEYLEKL 135
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 14/110 (12%)
Query: 45 EVLMVSSPNRSDL-VFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSK 103
EVL+VSS D + P GG E +E AA RE EEAGV+G L + +GI+E + +
Sbjct: 55 EVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RLVGIFENQERKH 113
Query: 104 QDLHSLEGGCRGYMFSLEVTEELEIWPEQEN--RYRKWLNIQDAFQLCRY 151
R Y++ L VTE LE W + N R R+W I+DA ++ +Y
Sbjct: 114 ----------RTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQY 153
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 64/122 (52%), Gaps = 15/122 (12%)
Query: 45 EVLMVSSPNRSD-LVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSK 103
EVL+VSS D + P GG E +E AA RE EEAGV+GKL + LG++E
Sbjct: 17 EVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLG-RLLGVFE----QN 71
Query: 104 QDLHSLEGGCRGYMFSLEVTEELEIWPEQEN--RYRKWLNIQDAFQL--CRYEWMREALE 159
QD R Y++ L VTE LE W + + R R+W ++DA ++ C E LE
Sbjct: 72 QDPEH-----RTYVYVLTVTELLEDWEDSVSIGRKREWFKVEDAIKVLQCHKPVHAEYLE 126
Query: 160 KF 161
K
Sbjct: 127 KL 128
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACR 76
N +++ GCIP E EN+ + + +P R P G EN+ET+++ A R
Sbjct: 38 NPKVIVGCIP-------EWENKVLLCKRAI----APYRGKWTLPAGFXENNETLVQGAAR 86
Query: 77 EALEEAGVRGKLNE 90
E LEEA R ++ E
Sbjct: 87 ETLEEANARVEIRE 100
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 45 EVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNE--KPLGIWEFRSKS 102
EVL++ +P+ FPKG E E E A RE EE GV+G++ + + W + K
Sbjct: 16 EVLLIKTPSNV-WSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYW-YTLKG 73
Query: 103 KQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFM 162
++ +++ + L +E E P E + K+ I++A +L +Y+ +E EK +
Sbjct: 74 ERIFKTVK-------YYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKAL 126
Query: 163 KV 164
K+
Sbjct: 127 KL 128
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 44 IEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLN 89
IEV +V P D +PKG E +ET AA RE EE G KL
Sbjct: 38 IEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLG 83
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 46 VLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVR-GKLN-----EKPLGIWEFR 99
+L+ +S PKG E E +E A RE EEAG+ G+L ++ L + R
Sbjct: 27 LLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELN-YVAR 85
Query: 100 SKSKQDLHSLEGGCRGYMFSLEVTE-ELEIWPEQENRYRKWLNIQDAFQLCRYEWMREAL 158
+K K ++ L EV + ++EI E++ +WL +++A QL +++ M+ AL
Sbjct: 86 NKPKTVIYWLA----------EVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAAL 135
Query: 159 EKFMKVMSEEQKVE 172
++ + + + +E
Sbjct: 136 QEGHQFLCSIEALE 149
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 38 EDTQTRIEVLMVSSP--NR-SDLVFPKGGWENDETVMEAACREALEEAGV 84
ED +T+ V+ +P NR S FP G ENDE E+ RE EE G+
Sbjct: 16 EDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGL 65
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 58 VFPKGGWENDETVMEAACREALEEAGVRGKL 88
VFPKG E E++ EAA RE EE GVR ++
Sbjct: 27 VFPKGHPEPGESLEEAAVREVWEETGVRAEV 57
>pdb|3XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins
pdb|3XIM|B Chain B, Arginine Residues As Stabilizing Elements In Proteins
pdb|3XIM|C Chain C, Arginine Residues As Stabilizing Elements In Proteins
pdb|3XIM|D Chain D, Arginine Residues As Stabilizing Elements In Proteins
Length = 393
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 41 QTRIEVLMVSSPNRSDLVFPKGGW-ENDETVMEAACREALEEAGVRGKLNEKPLGIWEFR 99
+T + V MV++ + VF GG+ ND +V A R+ L + + +L K L +W R
Sbjct: 80 ETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGR 139
Query: 100 SKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALE 159
++ D + +V+ L+ RYR+ LN+ + R +R A+E
Sbjct: 140 EGAEYDS------------AKDVSAALD-------RYREALNLLAQYSEDRGYGLRFAIE 180
>pdb|5XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIN|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIN|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIN|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 41 QTRIEVLMVSSPNRSDLVFPKGGW-ENDETVMEAACREALEEAGVRGKLNEKPLGIWEFR 99
+T + V MV++ + VF GG+ ND +V A R+ L + + +L K L +W R
Sbjct: 80 ETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGR 139
Query: 100 SKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALE 159
++ D + +V+ L+ RYR+ LN+ + R +R A+E
Sbjct: 140 EGAEYDS------------AKDVSAALD-------RYREALNLLAQYSEDRGYGLRFAIE 180
>pdb|8XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|8XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|8XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|8XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 41 QTRIEVLMVSSPNRSDLVFPKGGW-ENDETVMEAACREALEEAGVRGKLNEKPLGIWEFR 99
+T + V MV++ + VF GG+ ND +V A R+ L + + +L K L +W R
Sbjct: 80 ETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGR 139
Query: 100 SKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALE 159
++ D + +V+ L+ RYR+ LN+ + R +R A+E
Sbjct: 140 EGAEYDS------------AKDVSAALD-------RYREALNLLAQYSEDRGYGLRFAIE 180
>pdb|2XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins
pdb|2XIM|B Chain B, Arginine Residues As Stabilizing Elements In Proteins
pdb|2XIM|C Chain C, Arginine Residues As Stabilizing Elements In Proteins
pdb|2XIM|D Chain D, Arginine Residues As Stabilizing Elements In Proteins
Length = 393
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 41 QTRIEVLMVSSPNRSDLVFPKGGW-ENDETVMEAACREALEEAGVRGKLNEKPLGIWEFR 99
+T + V MV++ + VF GG+ ND +V A R+ L + + +L K L +W R
Sbjct: 80 ETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGR 139
Query: 100 SKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALE 159
++ D + +V+ L+ RYR+ LN+ + R +R A+E
Sbjct: 140 EGAEYDS------------AKDVSAALD-------RYREALNLLAQYSEDRGYGLRFAIE 180
>pdb|1XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins
pdb|1XIM|B Chain B, Arginine Residues As Stabilizing Elements In Proteins
pdb|1XIM|C Chain C, Arginine Residues As Stabilizing Elements In Proteins
pdb|1XIM|D Chain D, Arginine Residues As Stabilizing Elements In Proteins
pdb|4XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|4XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|4XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|4XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 41 QTRIEVLMVSSPNRSDLVFPKGGW-ENDETVMEAACREALEEAGVRGKLNEKPLGIWEFR 99
+T + V MV++ + VF GG+ ND +V A R+ L + + +L K L +W R
Sbjct: 80 ETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGR 139
Query: 100 SKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALE 159
++ D + +V+ L+ RYR+ LN+ + R +R A+E
Sbjct: 140 EGAEYDS------------AKDVSAALD-------RYREALNLLAQYSEDRGYGLRFAIE 180
>pdb|2XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|2XIN|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|2XIN|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|2XIN|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 41 QTRIEVLMVSSPNRSDLVFPKGGW-ENDETVMEAACREALEEAGVRGKLNEKPLGIWEFR 99
+T + V MV++ + VF GG+ ND +V A R+ L + + +L K L +W R
Sbjct: 80 ETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGR 139
Query: 100 SKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALE 159
++ D + +V+ L+ RYR+ LN+ + R +R A+E
Sbjct: 140 EGAEYDS------------AKDVSAALD-------RYREALNLLAQYSEDRGYGLRFAIE 180
>pdb|1XIN|A Chain A, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1XIN|B Chain B, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1XIN|C Chain C, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1XIN|D Chain D, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1BHW|A Chain A, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|B Chain B, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|C Chain C, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|D Chain D, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
Length = 393
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 41 QTRIEVLMVSSPNRSDLVFPKGGW-ENDETVMEAACREALEEAGVRGKLNEKPLGIWEFR 99
+T + V MV++ + VF GG+ ND +V A R+ L + + +L K L +W R
Sbjct: 80 ETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGR 139
Query: 100 SKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALE 159
++ D + +V+ L+ RYR+ LN+ + R +R A+E
Sbjct: 140 EGAEYDS------------AKDVSAALD-------RYREALNLLAQYSEDRGYGLRFAIE 180
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%)
Query: 46 VLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVR-GKLN-----EKPLGIWEFR 99
+L+ +S PKG E E +E A R EEAG+ G+L ++ L + R
Sbjct: 32 LLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELN-YVAR 90
Query: 100 SKSKQDLHSLEGGCRGYMFSLEVTE-ELEIWPEQENRYRKWLNIQDAFQLCRYEWMREAL 158
+K K ++ L EV + ++EI E++ +WL +++A QL +++ M+ AL
Sbjct: 91 NKPKTVIYWLA----------EVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAAL 140
Query: 159 EK 160
++
Sbjct: 141 QE 142
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 45 EVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGK 87
+VL++ P R V P G E E+++E RE EE G+ K
Sbjct: 16 QVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVK 58
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 58 VFPKGGWENDETVMEAACREALEEAGVRGKL 88
VFPKG E E++ EAA RE E+ GVR ++
Sbjct: 27 VFPKGHPEPGESLEEAAVREVWEQTGVRAEV 57
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 60 PKGGWENDETVMEAACREALEEAGVRGK 87
P G E DET++EAA RE EE G+ +
Sbjct: 34 PAGHLEADETLVEAAARELWEETGISAQ 61
>pdb|3XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|3XIN|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|3XIN|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|3XIN|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 41 QTRIEVLMVSSPNRSDLVFPKGGW-ENDETVMEAACREALEEAGVRGKLNEKPLGIWEFR 99
+T + V MV++ + VF GG+ ND +V A R+ L + + +L K L +W R
Sbjct: 80 ETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGR 139
Query: 100 SKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALE 159
++ D + +V+ L+ RYR+ LN+ + R +R A++
Sbjct: 140 EGAEYDS------------AKDVSAALD-------RYREALNLLAQYSEDRGYGLRFAIQ 180
>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
Length = 193
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 52 PNRSDLVF-PKGGWENDETVMEAACREALEEAGVRGKLNE 90
PN ++ P GG++ T +E CRE L+ V+G++NE
Sbjct: 115 PNSRVMIHQPLGGYQGQATDIEIHCREILK---VKGRMNE 151
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 45 EVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGV 84
+VL+V ++P G E++ET +EA RE EE G+
Sbjct: 13 KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGI 52
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 46 VLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVR-------GKLNEKPLGIWEF 98
+++V +PN + + P G E ET EA RE LEE G+ G+ +E F
Sbjct: 33 MVLVQAPNGAYFL-PGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEY------F 85
Query: 99 RSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREAL 158
S +Q + GY + +L P + W+ ++A +L + R A+
Sbjct: 86 YSNHRQTAYY----NPGYFYVANTWRQLSE-PLERTNTLHWVAPEEAVRLLKRGSHRWAV 140
Query: 159 EKFMKVMS 166
EK++ S
Sbjct: 141 EKWLAAAS 148
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 59 FPKGGWENDETVMEAACREALEEAG 83
FPKG + DE+ ++ A RE EE G
Sbjct: 125 FPKGKIDKDESDVDCAIREVYEETG 149
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 59 FPKGGWENDETVMEAACREALEEAG 83
FPKG + DE+ ++ A RE EE G
Sbjct: 130 FPKGKIDKDESDVDCAIREVYEETG 154
>pdb|1OS5|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Novel Non-Competitive Inhibitor
Length = 576
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|3HFW|A Chain A, Crystal Structure Of Human Adp-Ribosylhydrolase 1 (Harh1)
Length = 357
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 66 NDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQD-LHSLEGGCRGYMFSLEVTE 124
+D+TVM A EAL EAG KL + ++ +K QD + ++G G V
Sbjct: 54 SDDTVMHLATAEALVEAGKAPKLTQ----LYYLLAKHYQDCMEDMDGRAPG---GASVHN 106
Query: 125 ELEIWPEQENRYR 137
+++ P + N +R
Sbjct: 107 AMQLKPGKPNGWR 119
>pdb|3FRZ|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase In Complex
With
Length = 576
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|2HAI|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase In Complex
With Novel Class Of Dihydropyrone-Containing Inhibitor
Length = 576
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|3CIZ|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CIZ|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ0|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ0|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ2|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ2|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ3|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ3|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ4|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ4|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ5|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ5|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3FQK|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Hcv-796
Inhibitor
pdb|3FQK|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Hcv-796
Inhibitor
pdb|3G86|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Thiazine
Inhibitor
pdb|3G86|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Thiazine
Inhibitor
pdb|3H59|A Chain A, Hepatitis C Virus Polymerase Ns5b With Thiazine Inhibitor
2
pdb|3H59|B Chain B, Hepatitis C Virus Polymerase Ns5b With Thiazine Inhibitor
2
pdb|3H5S|A Chain A, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
pdb|3H5S|B Chain B, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
pdb|3H5U|A Chain A, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
1
pdb|3H5U|B Chain B, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
1
pdb|3H98|A Chain A, Crystal Structure Of Hcv Ns5b 1b With (1,1-Dioxo-2h-[1,2,
4]benzothiadiazin-3-Yl) Azolo[1,5-A]pyrimidine
Derivative
pdb|3H98|B Chain B, Crystal Structure Of Hcv Ns5b 1b With (1,1-Dioxo-2h-[1,2,
4]benzothiadiazin-3-Yl) Azolo[1,5-A]pyrimidine
Derivative
Length = 576
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 497 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 544
>pdb|2JC0|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb655264
pdb|2JC0|B Chain B, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb655264
pdb|2JC1|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb698223
pdb|2JC1|B Chain B, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb698223
Length = 570
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|3MF5|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk) With Amide
Bioisostere Thumb Site Inhibitor
pdb|3MF5|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk) With Amide
Bioisostere Thumb Site Inhibitor
Length = 570
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|2ZKU|A Chain A, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|B Chain B, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|C Chain C, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|D Chain D, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|3PHE|A Chain A, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|B Chain B, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|C Chain C, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|D Chain D, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3UDL|A Chain A, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|B Chain B, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|C Chain C, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|D Chain D, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
Length = 576
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 497 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 544
>pdb|2I1R|A Chain A, Novel Thiazolones As Hcv Ns5b Polymerase Inhibitors:
Further Designs, Synthesis, Sar And X-Ray Complex
Structure
pdb|2I1R|B Chain B, Novel Thiazolones As Hcv Ns5b Polymerase Inhibitors:
Further Designs, Synthesis, Sar And X-Ray Complex
Structure
pdb|2HWH|A Chain A, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2HWH|B Chain B, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2HWI|A Chain A, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2HWI|B Chain B, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2IJN|A Chain A, Isothiazoles As Active-Site Inhibitors Of Hcv Ns5b
Polymerase
pdb|2IJN|B Chain B, Isothiazoles As Active-Site Inhibitors Of Hcv Ns5b
Polymerase
pdb|2O5D|A Chain A, Thiazolone-Acylsulfonamides As Novel Hcv Ns5b Polymerase
Allosteric Inhibitors: Convergence Of Structure-Based
Drug Design And X-Ray Crystallographic Study
pdb|2O5D|B Chain B, Thiazolone-Acylsulfonamides As Novel Hcv Ns5b Polymerase
Allosteric Inhibitors: Convergence Of Structure-Based
Drug Design And X-Ray Crystallographic Study
Length = 576
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 497 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 544
>pdb|2D3U|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3U|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3Z|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3Z|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D41|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Inhibitor
pdb|2D41|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Inhibitor
Length = 570
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|1NHU|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHU|B Chain B, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHV|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHV|B Chain B, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
Length = 578
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 499 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 546
>pdb|4EO6|A Chain A, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
pdb|4EO6|B Chain B, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
pdb|4EO8|A Chain A, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
pdb|4EO8|B Chain B, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
Length = 577
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 498 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 545
>pdb|1C2P|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
pdb|1C2P|B Chain B, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Length = 576
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 497 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 544
>pdb|2GIQ|A Chain A, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-2 Inhibitor
pdb|2GIQ|B Chain B, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-2 Inhibitor
pdb|2GIR|A Chain A, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-1 Inhibitor
pdb|2GIR|B Chain B, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-1 Inhibitor
Length = 568
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 497 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 544
>pdb|3BR9|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BR9|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSA|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSA|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSC|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSC|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CO9|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CO9|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CDE|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CDE|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CVK|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CVK|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CWJ|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CWJ|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3D28|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Benzisothiazole Inhibitor
pdb|3D28|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Benzisothiazole Inhibitor
pdb|3D5M|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3D5M|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3E51|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3E51|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3GYN|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydropyridinone Inhibitor
pdb|3GYN|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydropyridinone Inhibitor
pdb|3H2L|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Novel Bicyclic Dihydro-Pyridinone Inhibitor
pdb|3H2L|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Novel Bicyclic Dihydro-Pyridinone Inhibitor
pdb|3IGV|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydro-Pyridinone Inhibitor
pdb|3IGV|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydro-Pyridinone Inhibitor
Length = 578
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|2FVC|A Chain A, Crystal Structure Of Ns5b Bk Strain (Delta 24) In Complex
With A 3-(1,1-Dioxo-2h-(1,2,4)-Benzothiadiazin-3-Yl)-4-
Hydroxy-2(1h)-Quinolinone
pdb|2FVC|B Chain B, Crystal Structure Of Ns5b Bk Strain (Delta 24) In Complex
With A 3-(1,1-Dioxo-2h-(1,2,4)-Benzothiadiazin-3-Yl)-4-
Hydroxy-2(1h)-Quinolinone
Length = 563
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|2DXS|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Tetracyclic Inhibitor
pdb|2DXS|B Chain B, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Tetracyclic Inhibitor
Length = 552
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|1QUV|A Chain A, Crystal Structure Of The Rna Directed Rna Polymerase Of
Hepatitis C Virus
pdb|2GC8|A Chain A, Structure Of A Proline Sulfonamide Inhibitor Bound To Hcv
Ns5b Polymerase
pdb|2GC8|B Chain B, Structure Of A Proline Sulfonamide Inhibitor Bound To Hcv
Ns5b Polymerase
pdb|2QE2|A Chain A, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE2|B Chain B, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|A Chain A, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|B Chain B, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|C Chain C, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|D Chain D, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|3VQS|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|B Chain B, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|C Chain C, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|D Chain D, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
Length = 578
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|3HHK|A Chain A, Hcv Ns5b Polymerase Complex With A Substituted
Benzothiadizine
pdb|3HHK|B Chain B, Hcv Ns5b Polymerase Complex With A Substituted
Benzothiadizine
Length = 563
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 491 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVKTKLKLTP 538
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 88 LNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEV 122
+ KP+G+W FR K EG C+G S +V
Sbjct: 173 FDNKPIGLWNFREK--------EGDCKGCTVSPQV 199
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 121 EVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFM--KVMSEE--QKVEITEE 176
+V E +IW + EN+Y K L ++ A + EALE M K + E + +I E
Sbjct: 6 DVAEISKIWAD-ENKYAKMLEVELA--------ILEALEDRMVPKGTAAEIRARAQIRPE 56
Query: 177 IVEPLPKPVP-DVIAECQIVSSNYCVTTTSSQHHGISA 213
V+ + K D+IA C ++ + T H G+++
Sbjct: 57 RVDEIEKVTKHDIIAFCTSIAEQFTAETGKFFHFGVTS 94
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 26 PYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVR 85
P L + +TQ + V+ P ++ FP G E E AA RE EE G+R
Sbjct: 8 PVELVTXVXVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLR 67
>pdb|3FQL|A Chain A, Hepatitis C Virus Polymerase Ns5b (Con1 1-570) With
Hcv-796 Inhibitor
Length = 578
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 499 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVRTKLKLTP 546
>pdb|1YVF|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Complex With Inhibitor Pha-00729145
pdb|1Z4U|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Complex With Inhibitor Pha-00799585
Length = 577
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 492 KLGVPPLRVWRHRARSVRAKLLSQGGRAAICGKYLFNWAVRTKLKLTP 539
>pdb|3QGD|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-1-[(4-Ethylphenyl)sulfonyl]-
N-(4-Methoxybenzyl)piperazine-2-Carboxamide
pdb|3QGD|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-1-[(4-Ethylphenyl)sulfonyl]-
N-(4-Methoxybenzyl)piperazine-2-Carboxamide
pdb|3QGE|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-N-(4-Methoxybenzyl)-1-{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGE|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(2,
6-Dimethoxypyrimidin-4-Yl)-N-(4-Methoxybenzyl)-1-{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGF|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(6-Chloropyridazin-3-Yl)-N-(4-Methoxybenzyl)-1-
{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGF|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
(2r)-4-(6-Chloropyridazin-3-Yl)-N-(4-Methoxybenzyl)-1-
{[4-
(Trifluoromethoxy)phenyl]sulfonyl}piperazine-2-
Carboxamide
pdb|3QGG|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
N-Cyclopropyl-6-[(3r)-3-{[4-
(Trifluoromethoxy)benzyl]carbamoyl}-
4-{[4-(Trifluoromethoxy)phenyl]sulfonyl}piperazin-1-
Yl]pyridazine-3- Carboxamide
pdb|3QGG|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid And
N-Cyclopropyl-6-[(3r)-3-{[4-
(Trifluoromethoxy)benzyl]carbamoyl}-
4-{[4-(Trifluoromethoxy)phenyl]sulfonyl}piperazin-1-
Yl]pyridazine-3- Carboxamide
pdb|3Q0Z|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid
pdb|3Q0Z|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns5b
Rna-Dependent Rna Polymerase Complex With
(2e)-3-(4-{[(1-{[(13-Cyclohexyl-6-Oxo-6,7-
Dihydro-5h-Indolo[1,2-D][1,4]benzodiazepin-10-Yl)
Carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-
Enoic Acid
Length = 574
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 87 KLNEKPLGIWEFRSKSKQDLHSLEGG----CRGYMFSLEVTEELEIWP 130
KL PL +W R++S + +GG C Y+F+ V +L++ P
Sbjct: 492 KLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAVRTKLKLTP 539
>pdb|1DXH|A Chain A, Catabolic Ornithine Carbamoyltransferase From Pseudomonas
Aeruginosa
Length = 335
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 57 LVFPKGGWENDETVMEAACREALEEAGVRGKLNEKP 92
+ PK W +DE V A C++ EE+G + L E P
Sbjct: 185 IAAPKALWPHDEFV--AQCKKFAEESGAKLTLTEDP 218
>pdb|1ORT|A Chain A, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|B Chain B, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|C Chain C, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|D Chain D, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|E Chain E, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|F Chain F, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|G Chain G, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|H Chain H, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|I Chain I, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|J Chain J, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|K Chain K, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|L Chain L, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
Length = 335
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 57 LVFPKGGWENDETVMEAACREALEEAGVRGKLNEKP 92
+ PK W +DE V A C++ EE+G + L E P
Sbjct: 185 IAAPKALWPHDEFV--AQCKKFAEESGAKLTLTEDP 218
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 59 FPKGGWENDETVMEAACREALEEAGVR 85
P G E+ E +AA REA EE G+R
Sbjct: 47 IPSGAVEDGENPQDAAVREACEETGLR 73
>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D.
Radiodurans
pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D.
Radiodurans Complexed With A Magnesium Ion
Length = 194
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 53 NRSDLVFPKGGWENDETVMEAACREALEEAGV 84
++ + FP G + ET +AA REA EE +
Sbjct: 62 HKGQIAFPGGSLDAGETPTQAALREAQEEVAL 93
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 39 DTQTRIEVLMVSSPNRSDLV--FPKGGWENDETVMEAACREALEEAGVRGKL 88
D TR ++L+V N+ + FP G E +E + + A RE EE G++ +
Sbjct: 35 DESTR-KILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEF 85
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 59 FPKGGWENDETVMEAACREALEEAGVRGKLNE 90
FP G ++ ET AA RE EE G +G + E
Sbjct: 94 FPAGLIDDGETPEAAALRELEEETGYKGDIAE 125
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 45 EVLMVSSPNR---SDLVFPKGGWENDETVMEAACREALEEAGV 84
EVL++ R P G E ET++EA RE EEAG+
Sbjct: 33 EVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGL 75
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 131 EQENRYRKWLNIQDAFQ---LCRYEWMREALEKFMKVMSEEQKVEITEEIVEPLPKPVPD 187
+++ Y KW+ + + + R + + A K+ + +S E K + I EPLP P
Sbjct: 13 DEKELYEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQ 72
Query: 188 VIAECQIVS 196
++ +V+
Sbjct: 73 TVSAPHMVA 81
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 59 FPKGGWENDETVMEAACREALEEAGVRGKLNE 90
FP G ++ ET AA RE EE G +G + E
Sbjct: 81 FPAGLIDDGETPEAAALRELEEETGYKGDIAE 112
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 59 FPKGGWENDETVMEAACREALEEAGVRGKLNE 90
FP G ++ ET AA RE EE G +G + E
Sbjct: 94 FPAGLIDDGETPEAAALRELEEETGYKGDIAE 125
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 59 FPKGGWENDETVMEAACREALEEAGVRGKLNE 90
FP G ++ ET AA RE EE G +G + E
Sbjct: 82 FPAGLIDDGETPEAAALRELEEETGYKGDIAE 113
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 59 FPKGGWENDETVMEAACREALEEAGVRGKLNE 90
FP G ++ ET AA RE EE G +G + E
Sbjct: 96 FPAGLIDDGETPEAAALRELEEETGYKGDIAE 127
>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
pdb|3FZF|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|B Chain B, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 114
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 148 LCRYEW-MREALEKFMKVMSEEQKVEITEEIVEP------LPKPVPDVIAECQIVSSNYC 200
LC+ + ++ +E+FMK++ E + + E + L K V +AEC V N C
Sbjct: 51 LCKLDRRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLVKKVQAFLAECDTVEQNIC 110
Query: 201 VTT 203
T
Sbjct: 111 QET 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,825,058
Number of Sequences: 62578
Number of extensions: 267762
Number of successful extensions: 766
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 733
Number of HSP's gapped (non-prelim): 78
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)