Query 027123
Match_columns 228
No_of_seqs 178 out of 1400
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2839 Diadenosine and diphos 99.9 4E-25 8.6E-30 169.0 11.5 139 12-166 1-143 (145)
2 cd03673 Ap6A_hydrolase Diadeno 99.9 3.8E-23 8.3E-28 158.1 15.1 129 19-162 1-130 (131)
3 cd04666 Nudix_Hydrolase_9 Memb 99.9 3.6E-23 7.8E-28 158.0 13.9 121 20-154 1-121 (122)
4 cd03428 Ap4A_hydrolase_human_l 99.9 5.8E-22 1.3E-26 151.8 13.4 128 19-162 2-129 (130)
5 PRK09438 nudB dihydroneopterin 99.9 2.5E-21 5.4E-26 152.1 13.5 135 18-166 6-147 (148)
6 cd03674 Nudix_Hydrolase_1 Memb 99.9 2.1E-20 4.5E-25 145.4 14.7 129 19-162 2-137 (138)
7 cd04695 Nudix_Hydrolase_36 Mem 99.9 1.5E-20 3.3E-25 144.8 13.5 127 21-163 1-129 (131)
8 cd04684 Nudix_Hydrolase_25 Con 99.8 3.8E-20 8.3E-25 140.8 14.6 121 21-158 2-127 (128)
9 cd04680 Nudix_Hydrolase_21 Mem 99.8 7E-20 1.5E-24 138.1 12.2 115 21-158 2-117 (120)
10 cd04677 Nudix_Hydrolase_18 Mem 99.8 7.5E-20 1.6E-24 140.3 12.2 120 17-151 5-125 (132)
11 cd04676 Nudix_Hydrolase_17 Mem 99.8 1.4E-19 3.1E-24 137.4 13.4 127 19-159 2-128 (129)
12 PRK15434 GDP-mannose mannosyl 99.8 9.5E-20 2.1E-24 145.1 12.8 122 18-152 16-141 (159)
13 cd04679 Nudix_Hydrolase_20 Mem 99.8 1.6E-19 3.4E-24 137.7 12.4 113 19-151 2-118 (125)
14 PF00293 NUDIX: NUDIX domain; 99.8 3.3E-19 7.2E-24 136.1 14.2 125 19-162 2-133 (134)
15 cd03430 GDPMH GDP-mannose glyc 99.8 4.6E-19 9.9E-24 139.0 14.7 118 18-148 11-132 (144)
16 cd04681 Nudix_Hydrolase_22 Mem 99.8 1.6E-19 3.5E-24 138.4 11.7 123 21-161 3-129 (130)
17 cd04687 Nudix_Hydrolase_28 Mem 99.8 6.7E-19 1.5E-23 134.8 13.8 119 19-152 1-125 (128)
18 cd03427 MTH1 MutT homolog-1 (M 99.8 4.4E-19 9.6E-24 137.1 12.7 110 45-162 13-125 (137)
19 cd04700 DR1025_like DR1025 fro 99.8 8.2E-19 1.8E-23 137.2 13.9 115 17-152 11-129 (142)
20 cd03675 Nudix_Hydrolase_2 Cont 99.8 1.8E-18 3.9E-23 133.3 15.5 121 21-162 2-128 (134)
21 cd04696 Nudix_Hydrolase_37 Mem 99.8 1E-18 2.2E-23 133.3 13.5 120 20-157 3-123 (125)
22 cd04688 Nudix_Hydrolase_29 Mem 99.8 1.1E-18 2.4E-23 133.2 13.4 103 45-152 13-122 (126)
23 PLN02325 nudix hydrolase 99.8 8E-19 1.7E-23 137.7 12.8 118 16-152 6-129 (144)
24 cd04673 Nudix_Hydrolase_15 Mem 99.8 1.1E-18 2.3E-23 131.9 13.1 115 21-153 2-119 (122)
25 COG1051 ADP-ribose pyrophospha 99.8 6.4E-19 1.4E-23 138.4 11.7 127 16-162 7-138 (145)
26 cd04672 Nudix_Hydrolase_14 Mem 99.8 1.2E-18 2.6E-23 132.6 12.5 116 19-153 2-117 (123)
27 cd04689 Nudix_Hydrolase_30 Mem 99.8 1.9E-18 4.2E-23 131.6 13.6 108 20-146 2-112 (125)
28 cd03672 Dcp2p mRNA decapping e 99.8 2E-18 4.3E-23 135.6 13.9 108 21-150 3-113 (145)
29 cd04664 Nudix_Hydrolase_7 Memb 99.8 9.7E-19 2.1E-23 134.0 11.6 121 21-158 3-128 (129)
30 cd04670 Nudix_Hydrolase_12 Mem 99.8 2E-18 4.4E-23 131.9 12.8 113 19-153 2-118 (127)
31 cd04690 Nudix_Hydrolase_31 Mem 99.8 8.1E-19 1.7E-23 132.2 10.4 100 45-152 13-114 (118)
32 cd03671 Ap4A_hydrolase_plant_l 99.8 4.9E-18 1.1E-22 133.4 14.9 127 18-159 2-141 (147)
33 cd04678 Nudix_Hydrolase_19 Mem 99.8 3.1E-18 6.7E-23 131.1 13.1 110 19-148 2-117 (129)
34 PRK15472 nucleoside triphospha 99.8 3.4E-18 7.4E-23 133.2 12.8 113 45-160 16-137 (141)
35 cd04667 Nudix_Hydrolase_10 Mem 99.8 2.3E-18 5E-23 129.0 10.2 99 45-157 12-110 (112)
36 cd04669 Nudix_Hydrolase_11 Mem 99.8 4.5E-18 9.7E-23 129.3 11.8 106 21-152 2-118 (121)
37 cd04686 Nudix_Hydrolase_27 Mem 99.8 6.2E-18 1.4E-22 130.3 12.6 113 21-149 2-120 (131)
38 PRK00714 RNA pyrophosphohydrol 99.8 7.5E-18 1.6E-22 133.9 13.3 135 17-166 6-152 (156)
39 cd04511 Nudix_Hydrolase_4 Memb 99.8 5.6E-18 1.2E-22 130.2 11.8 105 16-146 10-117 (130)
40 cd04661 MRP_L46 Mitochondrial 99.8 1.1E-17 2.4E-22 129.2 12.4 109 42-152 11-124 (132)
41 cd04691 Nudix_Hydrolase_32 Mem 99.8 1.1E-17 2.3E-22 126.5 11.9 94 45-150 12-110 (117)
42 cd03429 NADH_pyrophosphatase N 99.8 1.1E-17 2.3E-22 129.1 11.9 94 44-148 12-107 (131)
43 PRK10546 pyrimidine (deoxy)nuc 99.8 3.6E-17 7.8E-22 126.1 14.2 111 45-166 16-130 (135)
44 cd04683 Nudix_Hydrolase_24 Mem 99.7 1.7E-17 3.7E-22 125.4 11.9 99 45-150 12-116 (120)
45 cd04671 Nudix_Hydrolase_13 Mem 99.7 9.4E-18 2E-22 128.2 10.0 104 21-149 2-111 (123)
46 cd04682 Nudix_Hydrolase_23 Mem 99.7 1.7E-17 3.8E-22 126.0 11.1 96 45-149 13-115 (122)
47 cd04662 Nudix_Hydrolase_5 Memb 99.7 2.4E-17 5.2E-22 125.8 10.9 113 20-142 1-126 (126)
48 PRK05379 bifunctional nicotina 99.7 7.5E-17 1.6E-21 143.1 15.7 125 18-163 202-339 (340)
49 cd03424 ADPRase_NUDT5 ADP-ribo 99.7 5E-17 1.1E-21 125.7 12.6 111 20-152 3-119 (137)
50 cd03426 CoAse Coenzyme A pyrop 99.7 3E-17 6.5E-22 130.4 10.6 111 20-149 2-119 (157)
51 cd03670 ADPRase_NUDT9 ADP-ribo 99.7 8.4E-17 1.8E-21 130.8 12.5 121 42-164 47-185 (186)
52 cd04693 Nudix_Hydrolase_34 Mem 99.7 7.4E-17 1.6E-21 123.3 10.5 107 21-150 2-115 (127)
53 cd02885 IPP_Isomerase Isopente 99.7 1.6E-16 3.4E-21 127.3 12.6 118 17-151 28-151 (165)
54 PRK15393 NUDIX hydrolase YfcD; 99.7 2.6E-16 5.6E-21 127.9 13.3 114 44-167 49-170 (180)
55 cd04697 Nudix_Hydrolase_38 Mem 99.7 1.5E-16 3.3E-21 121.7 11.1 108 21-151 2-115 (126)
56 PRK10776 nucleoside triphospha 99.7 4.9E-16 1.1E-20 118.2 13.5 107 45-162 17-127 (129)
57 cd04694 Nudix_Hydrolase_35 Mem 99.7 3.4E-16 7.4E-21 122.7 12.3 107 45-152 14-135 (143)
58 PRK00241 nudC NADH pyrophospha 99.7 5.4E-16 1.2E-20 132.5 13.5 107 45-162 144-253 (256)
59 cd04699 Nudix_Hydrolase_39 Mem 99.7 5.7E-16 1.2E-20 117.9 12.3 98 45-150 14-116 (129)
60 cd04692 Nudix_Hydrolase_33 Mem 99.7 4.6E-16 1E-20 121.7 11.5 119 19-150 2-129 (144)
61 cd02883 Nudix_Hydrolase Nudix 99.7 4.8E-16 1E-20 116.0 10.9 110 21-150 2-114 (123)
62 cd03425 MutT_pyrophosphohydrol 99.7 1.7E-15 3.7E-20 113.8 13.6 106 44-160 13-122 (124)
63 TIGR00586 mutt mutator mutT pr 99.6 4.3E-15 9.3E-20 113.1 13.6 105 45-160 17-125 (128)
64 PRK03759 isopentenyl-diphospha 99.6 1.9E-15 4E-20 123.2 12.3 117 17-150 32-154 (184)
65 cd04685 Nudix_Hydrolase_26 Mem 99.6 2E-15 4.2E-20 116.9 11.4 112 21-152 2-129 (133)
66 TIGR02150 IPP_isom_1 isopenten 99.6 2.6E-15 5.7E-20 119.4 12.0 115 17-152 25-146 (158)
67 cd04665 Nudix_Hydrolase_8 Memb 99.6 2.8E-15 6E-20 113.8 11.3 91 45-145 12-102 (118)
68 PRK11762 nudE adenosine nucleo 99.6 6.1E-15 1.3E-19 120.3 12.5 101 45-154 60-165 (185)
69 cd04663 Nudix_Hydrolase_6 Memb 99.6 2.4E-14 5.2E-19 109.6 10.6 44 43-87 13-56 (126)
70 TIGR00052 nudix-type nucleosid 99.5 5.5E-14 1.2E-18 114.7 11.6 112 20-152 45-169 (185)
71 TIGR02705 nudix_YtkD nucleosid 99.5 2.5E-13 5.4E-18 107.6 14.3 94 45-151 36-130 (156)
72 cd04674 Nudix_Hydrolase_16 Mem 99.5 1.8E-13 3.8E-18 103.8 12.7 44 45-88 16-62 (118)
73 cd03676 Nudix_hydrolase_3 Memb 99.5 2.2E-13 4.9E-18 110.4 13.2 121 18-151 31-161 (180)
74 PRK10729 nudF ADP-ribose pyrop 99.5 2.1E-13 4.5E-18 112.7 13.2 112 20-152 50-175 (202)
75 PRK10707 putative NUDIX hydrol 99.5 1.8E-13 3.9E-18 112.1 12.6 114 17-150 28-148 (190)
76 PRK08999 hypothetical protein; 99.5 3.9E-13 8.5E-18 117.9 13.7 106 45-161 18-127 (312)
77 PRK15009 GDP-mannose pyrophosp 99.4 4E-12 8.8E-17 104.2 12.9 112 19-152 45-170 (191)
78 COG2816 NPY1 NTP pyrophosphohy 99.4 7.8E-13 1.7E-17 112.6 8.3 95 45-150 156-252 (279)
79 COG0494 MutT NTP pyrophosphohy 99.4 1E-11 2.2E-16 94.7 11.7 105 44-152 24-138 (161)
80 PLN02709 nudix hydrolase 99.3 1.3E-11 2.8E-16 102.8 11.3 117 17-148 30-155 (222)
81 KOG3041 Nucleoside diphosphate 99.3 5.2E-12 1.1E-16 101.5 8.3 131 42-217 86-222 (225)
82 PLN02552 isopentenyl-diphospha 99.3 5.2E-11 1.1E-15 101.0 14.6 135 17-164 54-226 (247)
83 PLN03143 nudix hydrolase; Prov 99.2 3.4E-10 7.3E-15 98.0 14.5 101 43-150 142-267 (291)
84 KOG3084 NADH pyrophosphatase I 99.2 4E-12 8.6E-17 108.9 2.1 97 45-150 201-300 (345)
85 COG4119 Predicted NTP pyrophos 99.2 7.3E-11 1.6E-15 88.6 7.9 126 18-165 2-151 (161)
86 PLN02791 Nudix hydrolase homol 99.2 4.3E-10 9.3E-15 108.3 14.0 132 5-150 14-160 (770)
87 cd03431 DNA_Glycosylase_C DNA 98.9 9E-08 2E-12 71.2 13.2 98 45-159 15-116 (118)
88 KOG0648 Predicted NUDIX hydrol 98.8 2.5E-09 5.3E-14 91.8 3.4 114 17-150 113-233 (295)
89 KOG3069 Peroxisomal NUDIX hydr 98.7 1E-07 2.3E-12 79.0 8.5 114 19-148 42-163 (246)
90 KOG4195 Transient receptor pot 98.5 3.5E-07 7.5E-12 75.1 8.2 118 42-164 137-270 (275)
91 COG1443 Idi Isopentenyldiphosp 98.4 1.1E-06 2.4E-11 69.9 7.3 117 18-151 32-156 (185)
92 PLN02839 nudix hydrolase 98.3 3E-06 6.5E-11 75.2 9.5 89 58-150 238-329 (372)
93 PF14815 NUDIX_4: NUDIX domain 98.2 3.3E-05 7.2E-10 57.6 10.4 100 45-158 10-113 (114)
94 PF13869 NUDIX_2: Nucleotide h 97.7 0.00012 2.6E-09 59.4 7.1 112 2-125 25-148 (188)
95 KOG2937 Decapping enzyme compl 97.5 3E-05 6.6E-10 67.4 1.1 103 21-145 84-189 (348)
96 COG4112 Predicted phosphoester 97.1 0.017 3.8E-07 45.6 11.7 117 14-147 55-186 (203)
97 KOG1689 mRNA cleavage factor I 96.6 0.002 4.3E-08 51.2 3.5 71 2-83 51-122 (221)
98 KOG4548 Mitochondrial ribosoma 96.6 0.02 4.3E-07 48.3 9.1 107 44-152 139-251 (263)
99 KOG0142 Isopentenyl pyrophosph 96.5 0.018 3.9E-07 47.1 8.1 92 68-164 103-205 (225)
100 KOG4432 Uncharacterized NUDIX 94.3 0.14 3.1E-06 44.4 6.5 81 57-144 81-161 (405)
101 KOG4313 Thiamine pyrophosphoki 93.8 0.2 4.4E-06 42.4 6.3 106 42-150 146-260 (306)
102 PRK10880 adenine DNA glycosyla 92.5 1.8 3.9E-05 38.9 10.8 95 45-158 243-341 (350)
103 KOG4432 Uncharacterized NUDIX 90.4 0.8 1.7E-05 39.9 6.0 87 57-151 286-379 (405)
104 PF14443 DBC1: DBC1 84.0 6 0.00013 30.2 6.8 46 42-87 6-59 (126)
105 PRK13910 DNA glycosylase MutY; 69.5 77 0.0017 27.7 10.8 25 136-160 256-280 (289)
106 PF07026 DUF1317: Protein of u 66.4 16 0.00034 24.0 4.2 23 55-80 22-44 (60)
107 COG4111 Uncharacterized conser 53.9 8.4 0.00018 33.0 1.7 41 151-195 218-258 (322)
108 PF03487 IL13: Interleukin-13; 49.3 17 0.00036 21.9 2.0 25 58-82 12-36 (43)
109 KOG2937 Decapping enzyme compl 37.9 13 0.00027 33.1 0.4 32 55-86 264-295 (348)
110 PRK07198 hypothetical protein; 31.8 44 0.00095 30.6 2.8 40 45-85 163-202 (418)
111 COG1194 MutY A/G-specific DNA 31.6 1.5E+02 0.0033 26.6 6.2 22 45-66 248-273 (342)
112 TIGR01084 mutY A/G-specific ad 29.3 1.4E+02 0.0031 25.8 5.6 18 45-62 240-261 (275)
113 KOG0648 Predicted NUDIX hydrol 22.5 1.2E+02 0.0025 26.7 3.7 32 56-88 56-87 (295)
114 PF14044 NETI: NETI protein 21.8 82 0.0018 20.5 2.0 28 63-92 3-31 (57)
115 COG4111 Uncharacterized conser 21.5 4.1E+02 0.009 23.0 6.6 53 42-99 35-88 (322)
No 1
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.93 E-value=4e-25 Score=168.98 Aligned_cols=139 Identities=53% Similarity=0.911 Sum_probs=118.3
Q ss_pred ccCC-CCcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC-CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeec
Q 027123 12 QRYD-NNFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLN 89 (228)
Q Consensus 12 ~~~~-~~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~ 89 (228)
|||+ +++|+++|||||+..+ +..+||||+..+ .+.|.+|+|++|++|+..+||.||++||+|+.+...
T Consensus 1 qry~~~G~r~vagCi~~r~~~----------~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~ 70 (145)
T KOG2839|consen 1 QRYDPAGFRLVAGCICYRSDK----------EKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLG 70 (145)
T ss_pred CccCCCCcEEEEEeeeeeecC----------cceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeee
Confidence 6899 7999999999999986 357999999877 567999999999999999999999999999999888
Q ss_pred cccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCc--ceeeEEEehhhHhhhcCchHHHHHHHHHHHHHh
Q 027123 90 EKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQE--NRYRKWLNIQDAFQLCRYEWMREALEKFMKVMS 166 (228)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e--~~~~~W~~~~el~~~~~~~~~~~~l~~~l~~l~ 166 (228)
..+.+.+++.+..... .+..++|.+.+......+|+.+ ..+.+|+.++|+.+.+.+..++.++..+++.+.
T Consensus 71 ~~~~g~~~~~~~~~~~------~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~l~ 143 (145)
T KOG2839|consen 71 RLLGGFEDFLSKKHRT------KPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQFLC 143 (145)
T ss_pred ccccchhhccChhhcc------cccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 6555555666655433 2567889998888877778776 899999999999999999999999988887764
No 2
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.91 E-value=3.8e-23 Score=158.08 Aligned_cols=129 Identities=29% Similarity=0.371 Sum_probs=101.9
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEE
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEF 98 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~ 98 (228)
+++||||+++..+ ++.+|||++++..+.|.||||+++.|||+.+||.||++||||+.+.... .++.+.+
T Consensus 1 ~~~a~~ii~~~~~----------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 69 (131)
T cd03673 1 VLAAGGVVFRGSD----------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGD-PLGTIRY 69 (131)
T ss_pred CeeEEEEEEEccC----------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecc-eEEEEEE
Confidence 4689999999764 4679999999887889999999999999999999999999999987764 5676665
Q ss_pred eeCCcccCCCCCCcEEEEEEEEEeCccccCC-CCCcceeeEEEehhhHhhhcCchHHHHHHHHHH
Q 027123 99 RSKSKQDLHSLEGGCRGYMFSLEVTEELEIW-PEQENRYRKWLNIQDAFQLCRYEWMREALEKFM 162 (228)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l 162 (228)
....... .....+++|.+......... ++.|+.+++|++++++.+++.++..+.++..++
T Consensus 70 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 130 (131)
T cd03673 70 WFSSSGK----RVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL 130 (131)
T ss_pred eccCCCC----CcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence 5432211 22356677777765433322 567889999999999999999999999988765
No 3
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.90 E-value=3.6e-23 Score=157.98 Aligned_cols=121 Identities=48% Similarity=0.768 Sum_probs=95.8
Q ss_pred EEEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEe
Q 027123 20 LVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFR 99 (228)
Q Consensus 20 ~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~ 99 (228)
+++|+|+++..+ +..+|||+++...+.|.||||+|+.|||+.+||+||++||||+++......++++.+.
T Consensus 1 ~~~g~v~~~~~~----------~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~ 70 (122)
T cd04666 1 LQAGAIPYRETG----------GEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYR 70 (122)
T ss_pred CEEEEEEEEEcC----------CceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEee
Confidence 378999999764 4579999998877889999999999999999999999999999976552358888766
Q ss_pred eCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchHH
Q 027123 100 SKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWM 154 (228)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~ 154 (228)
..... ......+++|.+.+.......++.++.+++|++++++.+++.+++.
T Consensus 71 ~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~~~~ 121 (122)
T cd04666 71 KRSKN----RPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEEPEL 121 (122)
T ss_pred ecCCC----CCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCChhh
Confidence 54321 1224567888888766544445667889999999999999998764
No 4
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.88 E-value=5.8e-22 Score=151.82 Aligned_cols=128 Identities=26% Similarity=0.310 Sum_probs=96.9
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEE
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEF 98 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~ 98 (228)
+.++|+|+|...+ ++.+|||++++. +.|.+|||+++.|||+.+||.||++||||+.+.... .++.+.+
T Consensus 2 ~~~~g~vi~~~~~----------~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 69 (130)
T cd03428 2 ERSAGAIIYRRLN----------NEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLF-IVLGFKE 69 (130)
T ss_pred ceEEEEEEEEecC----------CCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhh-hhcccee
Confidence 5689999999876 677999999988 889999999999999999999999999999977553 2323322
Q ss_pred eeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHH
Q 027123 99 RSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFM 162 (228)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l 162 (228)
...... ......+++|.+.+........+.|..+++|++++++.+++.++..+.+++++.
T Consensus 70 ~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~ 129 (130)
T cd03428 70 TLNYQV----RGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKAH 129 (130)
T ss_pred EEEccc----cCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHHhh
Confidence 111110 012355677888776332222347889999999999999999998888887764
No 5
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.87 E-value=2.5e-21 Score=152.09 Aligned_cols=135 Identities=19% Similarity=0.185 Sum_probs=94.0
Q ss_pred cEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC-CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeecc-ccce-
Q 027123 18 FRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNE-KPLG- 94 (228)
Q Consensus 18 ~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~-~~l~- 94 (228)
.+.+|++|+++.++ +|||+++.. .+.|.+|||+++.|||+.+||+||++||||+++.... ..+.
T Consensus 6 ~~~~v~~vi~~~~~-------------~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~ 72 (148)
T PRK09438 6 RPVSVLVVIYTPDL-------------GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDC 72 (148)
T ss_pred CceEEEEEEEeCCC-------------eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeeccc
Confidence 46688888887654 799998865 4679999999999999999999999999999873221 1111
Q ss_pred ----EEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHHHHHh
Q 027123 95 ----IWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFMKVMS 166 (228)
Q Consensus 95 ----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l~~l~ 166 (228)
.+.+.........+.......++|.+........ ...|+.+++|++++++.++..++.++.+++.++.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~ 147 (148)
T PRK09438 73 QRSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPV-VLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRLA 147 (148)
T ss_pred ccccccccchhhhhccccccCCceeEEEEEecCCCCcc-ccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHhc
Confidence 1111110000001111234567787776543332 2348899999999999999999999999998887763
No 6
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.85 E-value=2.1e-20 Score=145.37 Aligned_cols=129 Identities=20% Similarity=0.209 Sum_probs=89.8
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccce----
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLG---- 94 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~---- 94 (228)
+.+|++++++.. ..+|||+++...+.|.+|||++++|||+++||.||++||||+++.... ..+
T Consensus 2 ~~~~~~~v~~~~------------~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 68 (138)
T cd03674 2 HFTASAFVVNPD------------RGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLR-PLSVLVD 68 (138)
T ss_pred cEEEEEEEEeCC------------CCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccce-ecccccc
Confidence 467888888754 138999998888889999999999999999999999999999865331 221
Q ss_pred --EEEEeeCCcccCCCCCCcEEEEEEEEEeCccccC-CCCCcceeeEEEehhhHhhhcCchHHHHHHHHHH
Q 027123 95 --IWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEI-WPEQENRYRKWLNIQDAFQLCRYEWMREALEKFM 162 (228)
Q Consensus 95 --~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l 162 (228)
.+......... .....+...+|.+.+...... .++.|..+++|++++++.++...++++.++.+++
T Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 137 (138)
T cd03674 69 LDVHPIDGHPKRG--VPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKAL 137 (138)
T ss_pred ceeEeecCCCCCC--CCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence 11111111100 001112334566665433222 2566889999999999988888889999998876
No 7
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.5e-20 Score=144.77 Aligned_cols=127 Identities=19% Similarity=0.175 Sum_probs=91.0
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCC--CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEE
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN--RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEF 98 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~--~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~ 98 (228)
++|||++.... +..+|||++|.. .+.|.+|||++++|||+.+||+||++||||+++.... ..+...+
T Consensus 1 ~~~~v~~~~~~----------~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~~~~~~ 69 (131)
T cd04695 1 AVSGVLLRSLD----------KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELY-NADYLEQ 69 (131)
T ss_pred CceEEEEEEcC----------CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccc-cccceee
Confidence 37888888755 456999999987 7889999999999999999999999999999865331 1111111
Q ss_pred eeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHHH
Q 027123 99 RSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFMK 163 (228)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l~ 163 (228)
...... .......+|.+.+.......++.|+.+++|++++++.++..+++++.++..+..
T Consensus 70 ~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~ 129 (131)
T cd04695 70 FYEAND-----NRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWR 129 (131)
T ss_pred EeecCC-----ceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHHHHh
Confidence 111111 111334556666543322234578999999999999999999999998877654
No 8
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.85 E-value=3.8e-20 Score=140.85 Aligned_cols=121 Identities=20% Similarity=0.195 Sum_probs=89.3
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCCC---CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEE
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR---SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWE 97 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~---~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~ 97 (228)
+|++|+++. + +|||+++.+. +.|.+|||+++.|||+.+||+||++||||+++... ..++.+.
T Consensus 2 ~~~~ii~~~-~-------------~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~ 66 (128)
T cd04684 2 GAYAVIPRD-G-------------KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG-RRLGSAS 66 (128)
T ss_pred eeEEEEEeC-C-------------EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc-eeeeEEE
Confidence 467777775 2 8999998764 77999999999999999999999999999998765 3467665
Q ss_pred EeeCCcccCCCCCCcEEEEEEEEEeCcccc--CCCCCcceeeEEEehhhHhhhcCchHHHHHH
Q 027123 98 FRSKSKQDLHSLEGGCRGYMFSLEVTEELE--IWPEQENRYRKWLNIQDAFQLCRYEWMREAL 158 (228)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 158 (228)
+......... ......++|.+....... ..++.+..+++|++++++......+..+.++
T Consensus 67 ~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~ 127 (128)
T cd04684 67 RYFYSPDGDY--DAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV 127 (128)
T ss_pred EEEECCCCCe--eccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence 4432221100 123456778777665442 3356688899999999999888888766554
No 9
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=7e-20 Score=138.13 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=85.0
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeee-eccccceEEEEe
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGK-LNEKPLGIWEFR 99 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~-~~~~~l~~~~~~ 99 (228)
+|.+++++.++ +|||+++...+.|.+|||+++.|||+.+||+||++||||+.+. .. ..++.+.+.
T Consensus 2 ~~~~~i~~~~~-------------~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~-~~~~~~~~~ 67 (120)
T cd04680 2 GARAVVTDADG-------------RVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVA-ELLGVYYHS 67 (120)
T ss_pred ceEEEEECCCC-------------eEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCcccccc-ceEEEEecC
Confidence 45677776543 8999999877789999999999999999999999999999987 55 346665543
Q ss_pred eCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHH
Q 027123 100 SKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREAL 158 (228)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 158 (228)
.... ...+++|.+.........++.|+.+++|++++++++.+.. .+++.+
T Consensus 68 ~~~~--------~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~~-~~~~~~ 117 (120)
T cd04680 68 ASGS--------WDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEPTTP-ATRRRI 117 (120)
T ss_pred CCCC--------ceEEEEEEecccCCCccCCcccEEEEEEECHHHCcccCCh-HHHHHh
Confidence 3211 2345677776654432346678899999999999986654 344443
No 10
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=7.5e-20 Score=140.34 Aligned_cols=120 Identities=20% Similarity=0.170 Sum_probs=79.9
Q ss_pred CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEE
Q 027123 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIW 96 (228)
Q Consensus 17 ~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~ 96 (228)
-.+..|++++++.++ +|||+++...+.|.||||+|+.|||+.+||.||++||||+++.... .++++
T Consensus 5 ~~~~~~~~~v~~~~~-------------~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~-~~~~~ 70 (132)
T cd04677 5 LILVGAGVILLNEQG-------------EVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELE-LLGVY 70 (132)
T ss_pred ccccceEEEEEeCCC-------------CEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeE-EEEEe
Confidence 345566666776533 8999998877889999999999999999999999999999987653 34444
Q ss_pred EEeeCCcccCCCCCC-cEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCc
Q 027123 97 EFRSKSKQDLHSLEG-GCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRY 151 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 151 (228)
........ ...... .....+|...........+..|..+++|++++++..++..
T Consensus 71 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 71 SGKEFYVK-PNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred cCCceeec-CCCCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence 21110000 000111 1233344444333332346678899999999999887664
No 11
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.4e-19 Score=137.42 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=87.4
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEE
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEF 98 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~ 98 (228)
|..|++|+++.++ ++||++|...+.|.||||+++.|||+++||.||++||||+.+.... .++.+..
T Consensus 2 ~~~v~~ii~~~~~-------------~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~-~~~~~~~ 67 (129)
T cd04676 2 LPGVTAVVRDDEG-------------RVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTG-LVGIYTG 67 (129)
T ss_pred cceEEEEEECCCC-------------eEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeE-EEEEeec
Confidence 4567778876433 8999999888899999999999999999999999999999876542 3443322
Q ss_pred eeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHH
Q 027123 99 RSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALE 159 (228)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 159 (228)
..................+|.+.........+..|..+++|++++++..+..++.++.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~ 128 (129)
T cd04676 68 PVHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID 128 (129)
T ss_pred ccceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence 1110000000011233445555554433223566788999999999999988887777664
No 12
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.83 E-value=9.5e-20 Score=145.10 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=83.0
Q ss_pred cEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeee-ccccc
Q 027123 18 FRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKL-NEKPL 93 (228)
Q Consensus 18 ~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~-~~~~l 93 (228)
...+|++|+++.. .+|||+||.. .+.|.||||+|+.|||+++||+||++||||+++.. ...++
T Consensus 16 ~~~~v~~vI~~~~-------------g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~ 82 (159)
T PRK15434 16 PLISLDFIVENSR-------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFY 82 (159)
T ss_pred ceEEEEEEEECCC-------------CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEE
Confidence 3457788877643 3899999864 36799999999999999999999999999998643 22345
Q ss_pred eEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCch
Q 027123 94 GIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
+.+++..................+|.+..........+.|+.+++|+++++++....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~~~ 141 (159)
T PRK15434 83 GVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDNVH 141 (159)
T ss_pred EEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccccC
Confidence 55543322211000001124556677776554333345689999999999999874433
No 13
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.6e-19 Score=137.70 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=82.5
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceE
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGI 95 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~ 95 (228)
|.+|++++++.++ +|||+++.. .+.|.+|||+++.|||+.+||+||++||||+.+... .+++.
T Consensus 2 ~~~~~~~i~~~~~-------------~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~-~~~~~ 67 (125)
T cd04679 2 RVGCGAAILRDDG-------------KLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST-RLLCV 67 (125)
T ss_pred ceEEEEEEECCCC-------------EEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc-eEEEE
Confidence 6789999997543 899998864 467999999999999999999999999999998765 34565
Q ss_pred EEEeeCCcccCCCCCCcEEEEEEEEEeCccccC-CCCCcceeeEEEehhhHhhhcCc
Q 027123 96 WEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEI-WPEQENRYRKWLNIQDAFQLCRY 151 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~ 151 (228)
+.+..... .......+|.+........ ..+.|..+++|++++++++.+..
T Consensus 68 ~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~~ 118 (125)
T cd04679 68 VDHIIEEP------PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLTR 118 (125)
T ss_pred EeecccCC------CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhHH
Confidence 54332221 1123455677665543222 23457899999999999876553
No 14
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.82 E-value=3.3e-19 Score=136.14 Aligned_cols=125 Identities=25% Similarity=0.304 Sum_probs=93.4
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-----CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccc
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-----SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPL 93 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l 93 (228)
|.+|+||+++..+ +|||+++.+. +.|.+|||+++.|||+.+||+||++||||+.+... ..+
T Consensus 2 ~~~v~~ii~~~~~-------------~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~-~~~ 67 (134)
T PF00293_consen 2 RRAVGVIIFNEDG-------------KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPL-ELL 67 (134)
T ss_dssp EEEEEEEEEETTT-------------EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEE-EEE
T ss_pred CCEEEEEEEeCCc-------------EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccc-ccc
Confidence 6899999999763 8999999875 56999999999999999999999999999998544 235
Q ss_pred eEEEEeeCCcccCCCCCCcEEEEEEEEEeCccc--cCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHH
Q 027123 94 GIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEEL--EIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFM 162 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l 162 (228)
+.+.+....... .....++|.+...... ......|..+++|++++++.++..+.....+++.++
T Consensus 68 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 133 (134)
T PF00293_consen 68 GLFSYPSPSGDP-----EGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPWLY 133 (134)
T ss_dssp EEEEEEETTTES-----SEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHHH
T ss_pred eeeeecccCCCc-----ccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhcccc
Confidence 555554443321 1244556666555433 222334999999999999999998887777666553
No 15
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.82 E-value=4.6e-19 Score=138.99 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=82.5
Q ss_pred cEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeecc-ccc
Q 027123 18 FRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNE-KPL 93 (228)
Q Consensus 18 ~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~-~~l 93 (228)
.+.+|++||++.++ +|||++|.. .+.|.||||+++.|||+.+||+||++||||+.+.... ..+
T Consensus 11 p~v~v~~vI~~~~g-------------~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l 77 (144)
T cd03430 11 PLVSIDLIVENEDG-------------QYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELL 77 (144)
T ss_pred CeEEEEEEEEeCCC-------------eEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEE
Confidence 45688888987543 899999864 5679999999999999999999999999999876551 245
Q ss_pred eEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhh
Q 027123 94 GIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQL 148 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 148 (228)
+.+.+..................+|.+.........++.|+.+++|+++++++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 78 GVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred EEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence 6664332211111111122344556666554433345678999999999999864
No 16
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.6e-19 Score=138.36 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=84.6
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEE
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWE 97 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~ 97 (228)
+|++++++.++ +|||+++.. .+.|.+|||+++.|||+.+||.||++||||+++.... .++.+.
T Consensus 3 av~~~i~~~~~-------------~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~~~~~ 68 (130)
T cd04681 3 AVGVLILNEDG-------------ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELS-YLFSLP 68 (130)
T ss_pred eEEEEEEcCCC-------------cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCccccee-EEEeec
Confidence 56777776433 899998854 3679999999999999999999999999999876542 344432
Q ss_pred EeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHh-hhcCchHHHHHHHHH
Q 027123 98 FRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAF-QLCRYEWMREALEKF 161 (228)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~~~~~~~~~~l~~~ 161 (228)
........ ......++|.+............|+.+++|+++++++ ..+.++..+.+++++
T Consensus 69 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~~ 129 (130)
T cd04681 69 NTYPYGGM----EYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVERW 129 (130)
T ss_pred ceeeeCCc----eeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHhh
Confidence 21111110 1112234566666544333345688999999999995 456777777777664
No 17
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=6.7e-19 Score=134.82 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=83.0
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCC--CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEE
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN--RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIW 96 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~--~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~ 96 (228)
|.+|++|+++.+ +|||+++.+ .+.|.+|||+++.|||+++||.||++||||+.+... ..++.+
T Consensus 1 r~~a~~iv~~~~--------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~-~~~~~~ 65 (128)
T cd04687 1 RNSAKAVIIKND--------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIG-PLLFVR 65 (128)
T ss_pred CcEEEEEEEECC--------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccC-cEEEEE
Confidence 467888888743 799998854 346999999999999999999999999999998765 345555
Q ss_pred EEeeCCcccCCCCCCcEEEEEEEEEeCcccc----CCCCCcceeeEEEehhhHhhhcCch
Q 027123 97 EFRSKSKQDLHSLEGGCRGYMFSLEVTEELE----IWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
++.................++|.+....... ..++.+..+++|+++++++++..+|
T Consensus 66 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 66 EYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred EEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence 5543321111111223455677777654321 1234456789999999999887665
No 18
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.81 E-value=4.4e-19 Score=137.07 Aligned_cols=110 Identities=27% Similarity=0.275 Sum_probs=83.9
Q ss_pred eEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEE
Q 027123 45 EVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLE 121 (228)
Q Consensus 45 ~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 121 (228)
+|||+++.. .+.|.+|||+++.|||+.+||+||++||||+.+... ..++.+.+..... ......++|.+.
T Consensus 13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~------~~~~~~~~f~~~ 85 (137)
T cd03427 13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNL-KLVGIIKFPFPGE------EERYGVFVFLAT 85 (137)
T ss_pred EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecc-eEEEEEEEEcCCC------CcEEEEEEEEEC
Confidence 799999876 567999999999999999999999999999998766 3467766554321 112445666665
Q ss_pred eCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHH
Q 027123 122 VTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFM 162 (228)
Q Consensus 122 ~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l 162 (228)
....... .+.+..+++|++++++..+...++++.+++.++
T Consensus 86 ~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 125 (137)
T cd03427 86 EFEGEPL-KESEEGILDWFDIDDLPLLPMWPGDREWLPLML 125 (137)
T ss_pred CcccccC-CCCccccceEEcHhhcccccCCCCcHHHHHHHh
Confidence 4433222 345667899999999999888888999988877
No 19
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.81 E-value=8.2e-19 Score=137.17 Aligned_cols=115 Identities=23% Similarity=0.170 Sum_probs=83.8
Q ss_pred CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccc
Q 027123 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPL 93 (228)
Q Consensus 17 ~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l 93 (228)
-+..+|++|+++..+ +|||++++. .+.|+||||++++|||+++||+||++||||+++... .++
T Consensus 11 ~~~~av~~vv~~~~~-------------~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~~ 76 (142)
T cd04700 11 VEARAAGAVILNERN-------------DVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV-KFL 76 (142)
T ss_pred eeeeeEEEEEEeCCC-------------cEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc-EEE
Confidence 466788999997543 799998764 366999999999999999999999999999998766 356
Q ss_pred eEEEEeeCCcccCCCCCCcEEEEEEEEEeCccc-cCCCCCcceeeEEEehhhHhhhcCch
Q 027123 94 GIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEEL-EIWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
+.+.+..... .....++|.+...... ......|+.+++|++++++.+++...
T Consensus 77 ~~~~~~~~~~-------~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 77 GTYLGRFDDG-------VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred EEEEEEcCCC-------cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhccccc
Confidence 6554322111 1133466777664322 22234689999999999999887643
No 20
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.81 E-value=1.8e-18 Score=133.27 Aligned_cols=121 Identities=23% Similarity=0.358 Sum_probs=84.9
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCCC--CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEE
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR--SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEF 98 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~--~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~ 98 (228)
.|+||+...+ ++||+++... +.|.+|||+++.|||+.+||.||++||||+++... ..++.+.+
T Consensus 2 ~v~~ii~~~~--------------~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~ 66 (134)
T cd03675 2 TVAAVVERDG--------------RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPT-ALLGIYQW 66 (134)
T ss_pred eEEEEEEECC--------------EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccc-eEEEEEEe
Confidence 4667776543 7999998643 46999999999999999999999999999997655 24555554
Q ss_pred eeCCcccCCCCCCcEEEEEEEEEeCccccC-CCCCcceeeEEEehhhHhhhc---CchHHHHHHHHHH
Q 027123 99 RSKSKQDLHSLEGGCRGYMFSLEVTEELEI-WPEQENRYRKWLNIQDAFQLC---RYEWMREALEKFM 162 (228)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~---~~~~~~~~l~~~l 162 (228)
..... ......++|.+.+...... ..+.++.++.|++++++..+. .++...+.+..++
T Consensus 67 ~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l 128 (134)
T cd03675 67 TAPDS------DTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYL 128 (134)
T ss_pred ecCCC------CeeEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHH
Confidence 43221 1123345677766654322 245678899999999999886 3555555555544
No 21
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1e-18 Score=133.32 Aligned_cols=120 Identities=20% Similarity=0.176 Sum_probs=81.5
Q ss_pred EEEEEEEEeccCCCcccccccCCcceEEEEEeCC-CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEE
Q 027123 20 LVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEF 98 (228)
Q Consensus 20 ~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~ 98 (228)
.+|++++++.++ +|||+++.. .+.|.+|||+++.|||+.+||.||++||||+++.... .++...+
T Consensus 3 ~~v~~~i~~~~~-------------~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 68 (125)
T cd04696 3 VTVGALIYAPDG-------------RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIK-FAMVQEA 68 (125)
T ss_pred cEEEEEEECCCC-------------CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccc-eEEEEEE
Confidence 467778877433 799998753 5789999999999999999999999999999876553 3444333
Q ss_pred eeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHH
Q 027123 99 RSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREA 157 (228)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 157 (228)
....... .......+.|.+...... ...+.|+.+++|++++++.++-..+....+
T Consensus 69 ~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 123 (125)
T cd04696 69 IFSEEFH---KPAHFVLFDFFARTDGTE-VTPNEEIVEWEWVTPEEALDYPLNSFTRLL 123 (125)
T ss_pred eccCCCC---CccEEEEEEEEEEecCCc-ccCCcccceeEEECHHHHhcCCCCHHHHHH
Confidence 2221111 111233444555544322 234568899999999999988766644443
No 22
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.1e-18 Score=133.20 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCc
Q 027123 45 EVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTE 124 (228)
Q Consensus 45 ~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (228)
+|||+++...+.|.+|||+++.||++.+||.||++||||+++.... .++.+......... ......++|.+....
T Consensus 13 ~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~f~~~~~~ 87 (126)
T cd04688 13 KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITR-LLGVVENIFTYNGK----PGHEIEFYYLVTLLD 87 (126)
T ss_pred EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecce-eeEEEEEeeccCCc----ccEEEEEEEEEEeCC
Confidence 7999988877789999999999999999999999999999987663 46665432221111 112456778887665
Q ss_pred cccCC-------CCCcceeeEEEehhhHhhhcCch
Q 027123 125 ELEIW-------PEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 125 ~~~~~-------~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
..... ++.++.+++|++++++..+..+|
T Consensus 88 ~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 88 ESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred CcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence 43321 35688999999999998776555
No 23
>PLN02325 nudix hydrolase
Probab=99.80 E-value=8e-19 Score=137.67 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=83.0
Q ss_pred CCcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeecccc
Q 027123 16 NNFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKP 92 (228)
Q Consensus 16 ~~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~ 92 (228)
+..+.+|++++++.+ +|||+++.+ .+.|.+|||+++.|||+.+||+||++||||+++.... .
T Consensus 6 ~~p~~~v~~vi~~~~--------------~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~-~ 70 (144)
T PLN02325 6 PIPRVAVVVFLLKGN--------------SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIE-L 70 (144)
T ss_pred CCCeEEEEEEEEcCC--------------EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceE-E
Confidence 566788888888742 799999875 4679999999999999999999999999999987764 4
Q ss_pred ceEEEEeeCCcccCCCCCCcEEEEEEEEEeCcccc---CCCCCcceeeEEEehhhHhhhcCch
Q 027123 93 LGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELE---IWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
++++++....... .......+|.+...+... ....++..+++|+++++++..+..+
T Consensus 71 l~~~~~~~~~~~~----~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p 129 (144)
T PLN02325 71 LTVTNNVFLEEPK----PSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWP 129 (144)
T ss_pred EEEecceeecCCC----CcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHH
Confidence 6665433221111 112344556665443221 1123345789999999999876654
No 24
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.1e-18 Score=131.92 Aligned_cols=115 Identities=23% Similarity=0.256 Sum_probs=81.9
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEE
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWE 97 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~ 97 (228)
+|++++++.+ +|||+++.. .+.|.||||+++.|||+++||.||++||||+++.... .++.+.
T Consensus 2 ~v~~ii~~~~--------------~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~~ 66 (122)
T cd04673 2 AVGAVVFRGG--------------RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGR-LLTVVD 66 (122)
T ss_pred cEEEEEEECC--------------EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeece-eEEEEE
Confidence 4677777642 799998864 4669999999999999999999999999999987663 466665
Q ss_pred EeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchH
Q 027123 98 FRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEW 153 (228)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 153 (228)
+....... ........++|.+....... .+..|+.+++|++++++.++..+++
T Consensus 67 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~ 119 (122)
T cd04673 67 VIERDAAG--RVEFHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAALSLTES 119 (122)
T ss_pred EeeccCCC--ccceEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhCcCCcc
Confidence 54322110 01112344556666544333 3567889999999999998877654
No 25
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.80 E-value=6.4e-19 Score=138.38 Aligned_cols=127 Identities=22% Similarity=0.235 Sum_probs=88.8
Q ss_pred CCcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC---CCeEecccccCCCCCHHHHHHHHHHHHhceeeeecccc
Q 027123 16 NNFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR---SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKP 92 (228)
Q Consensus 16 ~~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~---~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~ 92 (228)
+.....|++++...+ +|||++|... |.|++|||++|.|||+++||.||++||||+++...+ .
T Consensus 7 ~~p~~~v~~~i~~~~--------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~-~ 71 (145)
T COG1051 7 RTPLVAVGALIVRNG--------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLE-L 71 (145)
T ss_pred CCcceeeeEEEEeCC--------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCccccee-E
Confidence 355667888888754 7999999865 779999999999999999999999999999987774 5
Q ss_pred ceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCc--hHHHHHHHHHH
Q 027123 93 LGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRY--EWMREALEKFM 162 (228)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~--~~~~~~l~~~l 162 (228)
+++++.+.+..+. ....+.+|.+...+........+...+.|+++++++.+... -.+..+...+.
T Consensus 72 ~~v~~~~~rd~r~-----~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 138 (145)
T COG1051 72 LAVFDDPGRDPRG-----HHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELPLPLAFTLADLRRLFL 138 (145)
T ss_pred EEEecCCCCCCce-----eEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccccccccccHHHHHHHHh
Confidence 7787766554221 12333444444334333323347889999999999975322 23444444433
No 26
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.2e-18 Score=132.59 Aligned_cols=116 Identities=15% Similarity=0.114 Sum_probs=82.4
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEE
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEF 98 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~ 98 (228)
++.|+|++++.+ +|||++++..+.|.+|||+++.|||+.+||.||++||||+.+... +.++.+..
T Consensus 2 ~~~v~~~i~~~~--------------~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~-~~~~~~~~ 66 (123)
T cd04672 2 KVDVRAAIFKDG--------------KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVR-KLAAVDDR 66 (123)
T ss_pred cceEEEEEEECC--------------EEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEe-EEEEEecc
Confidence 467788888752 799999988889999999999999999999999999999987544 44454432
Q ss_pred eeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchH
Q 027123 99 RSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEW 153 (228)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 153 (228)
...... .........+|.+........ +..|..+++|+++++++.+....+
T Consensus 67 ~~~~~~---~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~l~~~~~ 117 (123)
T cd04672 67 NKHHPP---PQPYQVYKLFFLCEILGGEFK-PNIETSEVGFFALDDLPPLSEKRN 117 (123)
T ss_pred ccccCC---CCceEEEEEEEEEEecCCccc-CCCceeeeEEECHHHCcccccCCc
Confidence 211110 001122345667666544332 347889999999999988766443
No 27
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.79 E-value=1.9e-18 Score=131.64 Aligned_cols=108 Identities=22% Similarity=0.188 Sum_probs=77.2
Q ss_pred EEEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEe
Q 027123 20 LVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFR 99 (228)
Q Consensus 20 ~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~ 99 (228)
..|++|++..+ +|||+++++.+.|.+|||+++.|||+.+||.||++||||+++... .+++.+.+.
T Consensus 2 ~~~~~vi~~~~--------------~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~l~~~~~~ 66 (125)
T cd04689 2 LRARAIVRAGN--------------KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG-RFLGAIENQ 66 (125)
T ss_pred eEEEEEEEeCC--------------EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeecc-EEEEEEeee
Confidence 46777877532 799999988788999999999999999999999999999998765 356666543
Q ss_pred eCCcccCCCCCCcEEEEEEEEEeCccc---cCCCCCcceeeEEEehhhHh
Q 027123 100 SKSKQDLHSLEGGCRGYMFSLEVTEEL---EIWPEQENRYRKWLNIQDAF 146 (228)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~el~ 146 (228)
...... ......++|.+...... ....+.++.+++|++++++.
T Consensus 67 ~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 67 WHEKGV----RTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred eccCCc----eEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence 221111 11233456666654321 12234568899999999965
No 28
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.79 E-value=2e-18 Score=135.62 Aligned_cols=108 Identities=22% Similarity=0.230 Sum_probs=74.9
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEee
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRS 100 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~ 100 (228)
++|+|+++.++ .+|||+++...+.|+||||+++.|||+.+||+||++||||+.+.... ... .|..
T Consensus 3 ~~gaii~~~~~------------~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~-~~~--~~~~ 67 (145)
T cd03672 3 VYGAIILNEDL------------DKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYI-DKD--DYIE 67 (145)
T ss_pred eeEEEEEeCCC------------CEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceecc-ccc--eeee
Confidence 68899998642 28999998776789999999999999999999999999999876431 111 1221
Q ss_pred CCcccCCCCCCcEEEEEEEEE-eCcccc--CCCCCcceeeEEEehhhHhhhcC
Q 027123 101 KSKQDLHSLEGGCRGYMFSLE-VTEELE--IWPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~-~~~~~~--~~~~~e~~~~~W~~~~el~~~~~ 150 (228)
..... ..+++|.+. ...... ..++.|+.+++|+++++++++..
T Consensus 68 ~~~~~-------~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 113 (145)
T cd03672 68 LIIRG-------QNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKN 113 (145)
T ss_pred cccCC-------cEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhh
Confidence 11111 223444443 222211 22356899999999999998755
No 29
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.79 E-value=9.7e-19 Score=134.02 Aligned_cols=121 Identities=23% Similarity=0.210 Sum_probs=85.4
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCC--CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEE
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN--RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEF 98 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~--~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~ 98 (228)
+|.+++++.. ++.+|||+++.. .+.|.+|||+++.|||+.+||+||++||||+.+.... .++.+..
T Consensus 3 ~~~v~~~~~~-----------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~ 70 (129)
T cd04664 3 SVLVVPYRLT-----------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLT-LLDRGAS 70 (129)
T ss_pred EEEEEEEEeC-----------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheE-EEeeccc
Confidence 5667777752 234899999876 5789999999999999999999999999999864331 2332221
Q ss_pred ---eeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHH
Q 027123 99 ---RSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREAL 158 (228)
Q Consensus 99 ---~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 158 (228)
..... .......++|.+..........+.|+.+++|++++++.+++.+++.+.++
T Consensus 71 ~~~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 71 IAFVEFTD-----NGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred ccccccCC-----CceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence 11101 01224567788876654322345688899999999999999988766654
No 30
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2e-18 Score=131.88 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=76.3
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCC--CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEE
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN--RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIW 96 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~--~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~ 96 (228)
+..|++++++..+ +|||++++. .+.|.+|||+++.|||+.+||.||++||||+.+.... .++..
T Consensus 2 ~~~~~~~v~~~~~-------------~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~-~~~~~ 67 (127)
T cd04670 2 TVGVGGLVLNEKN-------------EVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVS-VVGFR 67 (127)
T ss_pred eeEEEEEEEcCCC-------------eEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeE-EEEEE
Confidence 4567788887543 899999877 6889999999999999999999999999999876553 23322
Q ss_pred EEeeCCcccCCCCCCcEEEEEEEEEeCcc--ccCCCCCcceeeEEEehhhHhhhcCchH
Q 027123 97 EFRSKSKQDLHSLEGGCRGYMFSLEVTEE--LEIWPEQENRYRKWLNIQDAFQLCRYEW 153 (228)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~~ 153 (228)
.+.... . .....+|.+.+... .....+.|..+++|++++++........
T Consensus 68 ~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04670 68 HAHPGA-F-------GKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE 118 (127)
T ss_pred ecCCCC-c-------CceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH
Confidence 221111 1 01223344444321 1122356778899999999976644333
No 31
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=8.1e-19 Score=132.15 Aligned_cols=100 Identities=24% Similarity=0.282 Sum_probs=74.5
Q ss_pred eEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeee--ccccceEEEEeeCCcccCCCCCCcEEEEEEEEEe
Q 027123 45 EVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKL--NEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEV 122 (228)
Q Consensus 45 ~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 122 (228)
++||+++++.+.|.||||++++||++++||.||++||||+++.. . ..++.+.+...... ......++|.+..
T Consensus 13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~f~~~~ 86 (118)
T cd04690 13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSL-EYLGTFRAPAANEP-----GVDVRATVYVAEL 86 (118)
T ss_pred eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhhe-EEEEEEecccccCC-----CcEEEEEEEEEcc
Confidence 89999998888899999999999999999999999999998765 4 24555544322111 1224566777766
Q ss_pred CccccCCCCCcceeeEEEehhhHhhhcCch
Q 027123 123 TEELEIWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 123 ~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
.. ...+..++.+++|++++++.+....|
T Consensus 87 ~~--~~~~~~e~~~~~W~~~~e~~~~~~~~ 114 (118)
T cd04690 87 TG--EPVPAAEIEEIRWVDYDDPADDRLAP 114 (118)
T ss_pred cC--CcCCCchhhccEEecHHHccccccCc
Confidence 54 23356788999999999986655443
No 32
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.79 E-value=4.9e-18 Score=133.35 Aligned_cols=127 Identities=20% Similarity=0.281 Sum_probs=84.0
Q ss_pred cEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceE-
Q 027123 18 FRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGI- 95 (228)
Q Consensus 18 ~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~- 95 (228)
+|.+|++|+++.++ +|||+++... +.|.+|||+++.||++.+||.||++||||+++.... .++.
T Consensus 2 ~~~~v~~ii~~~~~-------------~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~-~l~~~ 67 (147)
T cd03671 2 YRPNVGVVLFNEDG-------------KVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVE-IIAEI 67 (147)
T ss_pred CCceEEEEEEeCCC-------------EEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceE-EEEEc
Confidence 46789999997543 8999999876 489999999999999999999999999999865432 2332
Q ss_pred ---EEEeeCCcc--cCCCC-CCcEEEEEEEEEeCc---cccCC--CCCcceeeEEEehhhHhhhcCchHHHHHHH
Q 027123 96 ---WEFRSKSKQ--DLHSL-EGGCRGYMFSLEVTE---ELEIW--PEQENRYRKWLNIQDAFQLCRYEWMREALE 159 (228)
Q Consensus 96 ---~~~~~~~~~--~~~~~-~~~~~~~~f~~~~~~---~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 159 (228)
+.|...... ....+ ......++|.+.+.. ..... ++.|+.+++|++++++.+++.. ..+.++.
T Consensus 68 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~-~~~~~~~ 141 (147)
T cd03671 68 PDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVP-FKRPVYE 141 (147)
T ss_pred CCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchh-hhHHHHH
Confidence 223221110 00000 112344566665543 21111 2568999999999999998763 3344443
No 33
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.1e-18 Score=131.11 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=79.9
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeC---CCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceE
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSP---NRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGI 95 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~---~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~ 95 (228)
|.+|++|+++..+ +|||++|. ..+.|.+|||+++.|||+.+||.||++||||+++.... .++.
T Consensus 2 ~~~v~~ii~~~~~-------------~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~-~~~~ 67 (129)
T cd04678 2 RVGVGVFVLNPKG-------------KVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQ-FLTV 67 (129)
T ss_pred ceEEEEEEECCCC-------------eEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceE-EEEE
Confidence 6788999998644 89999887 35779999999999999999999999999999976653 3555
Q ss_pred EEEeeCCcccCCCCCCcEEEEEEEEEeCccccCC---CCCcceeeEEEehhhHhhh
Q 027123 96 WEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIW---PEQENRYRKWLNIQDAFQL 148 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~e~~~~~W~~~~el~~~ 148 (228)
+....... .......+|.+......... ..++..+++|++++++.++
T Consensus 68 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 68 TNDVFEEE------GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EeEEeCCC------CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 43322111 11244556666665433221 2356778999999999885
No 34
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.78 E-value=3.4e-18 Score=133.16 Aligned_cols=113 Identities=20% Similarity=0.225 Sum_probs=72.4
Q ss_pred eEEEEEeCCC-----CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCc--ccCCCCC-CcEEE-
Q 027123 45 EVLMVSSPNR-----SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSK--QDLHSLE-GGCRG- 115 (228)
Q Consensus 45 ~vLLv~~~~~-----~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~--~~~~~~~-~~~~~- 115 (228)
+|||+||+.. |.|.+|||+++.|||+.+||.||++||||+++.... +..+.+..... ....... ..+.+
T Consensus 16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PRK15472 16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTE--ITPWTFRDDIRTKTYADGRKEEIYMIY 93 (141)
T ss_pred EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeee--eccccccccceeEEecCCCceeEEEEE
Confidence 8999997642 679999999999999999999999999999865432 11111110000 0000000 01111
Q ss_pred EEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHH
Q 027123 116 YMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEK 160 (228)
Q Consensus 116 ~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 160 (228)
.+|.+...... ..++.|+.+++|++++++.++...+..+.++..
T Consensus 94 ~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~ 137 (141)
T PRK15472 94 LIFDCVSANRD-VKINEEFQDYAWVKPEDLVHYDLNVATRKTLRL 137 (141)
T ss_pred EEEEeecCCCc-ccCChhhheEEEccHHHhccccccHHHHHHHHH
Confidence 22333333222 224578899999999999999888777777653
No 35
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=2.3e-18 Score=128.96 Aligned_cols=99 Identities=27% Similarity=0.266 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCc
Q 027123 45 EVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTE 124 (228)
Q Consensus 45 ~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (228)
+|||+++.. +.|.+|||++++|||+.+||.||++||||+.+.... .++.+. .. ....++|.+....
T Consensus 12 ~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~~~~~~--~~----------~~~~~~f~~~~~~ 77 (112)
T cd04667 12 RVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLL-YLFHVD--GG----------STRHHVFVASVPP 77 (112)
T ss_pred EEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceE-EEEEEe--CC----------CEEEEEEEEEcCC
Confidence 799999875 789999999999999999999999999999865442 233321 11 1234566666554
Q ss_pred cccCCCCCcceeeEEEehhhHhhhcCchHHHHH
Q 027123 125 ELEIWPEQENRYRKWLNIQDAFQLCRYEWMREA 157 (228)
Q Consensus 125 ~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 157 (228)
.....+..|+.+++|++++++.++..++.++.+
T Consensus 78 ~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 110 (112)
T cd04667 78 SAQPKPSNEIADCRWLSLDALGDLNASAATRLI 110 (112)
T ss_pred cCCCCCchheeEEEEecHHHhhhcccchhhhhh
Confidence 433345678899999999999998887755543
No 36
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=4.5e-18 Score=129.34 Aligned_cols=106 Identities=23% Similarity=0.227 Sum_probs=75.0
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCCC--CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEE
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR--SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEF 98 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~--~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~ 98 (228)
.|++|+++.++ +|||+++... +.|.||||+++.|||+.+||.||++||||+++... ..++.+.+
T Consensus 2 ~~~~ii~~~~~-------------~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~-~~~~~~~~ 67 (121)
T cd04669 2 RASIVIINDQG-------------EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVE-EIFLIVNQ 67 (121)
T ss_pred ceEEEEEeCCC-------------EEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeee-eEEEEEee
Confidence 36677776533 8999998643 56999999999999999999999999999998765 34555544
Q ss_pred eeCCcccCCCCCCcEEEEEEEEEeCccccC-C--------CCCcceeeEEEehhhHhhhcCch
Q 027123 99 RSKSKQDLHSLEGGCRGYMFSLEVTEELEI-W--------PEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~--------~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
. . ...++|.+........ . .+.+..+++|+++++++.+..+|
T Consensus 68 ~---~---------~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 68 N---G---------RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred C---C---------cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 1 1 1235666654332111 0 13345679999999999876655
No 37
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=6.2e-18 Score=130.34 Aligned_cols=113 Identities=24% Similarity=0.317 Sum_probs=76.1
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeee-eccccceEEEEe
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGK-LNEKPLGIWEFR 99 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~-~~~~~l~~~~~~ 99 (228)
+|++|+++.+ +|||+++++.+.|.||||+++.|||+.+||+||++||||+.+. .. ..++.+...
T Consensus 2 ~~~~ii~~~~--------------~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~-~~l~~~~~~ 66 (131)
T cd04686 2 AVRAIILQGD--------------KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVI-EKFGTYTER 66 (131)
T ss_pred cEEEEEEECC--------------EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccc-eEEEEEEee
Confidence 6788888753 7999999877789999999999999999999999999999863 33 346666422
Q ss_pred eCCcccCCCCCCcEEEEEEEEEeCcccc--CCCCCc---ceeeEEEehhhHhhhc
Q 027123 100 SKSKQDLHSLEGGCRGYMFSLEVTEELE--IWPEQE---NRYRKWLNIQDAFQLC 149 (228)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~e---~~~~~W~~~~el~~~~ 149 (228)
..... ..........++|.+....... .....+ ...+.|++++++....
T Consensus 67 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 67 RPWRK-PDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred ccccC-CCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhh
Confidence 11111 0011112345677777654321 111112 2358999999997753
No 38
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.77 E-value=7.5e-18 Score=133.86 Aligned_cols=135 Identities=21% Similarity=0.270 Sum_probs=91.5
Q ss_pred CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceE
Q 027123 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGI 95 (228)
Q Consensus 17 ~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~ 95 (228)
.+|.+|++++++.++ +|||+++... +.|.+|||+++.||++.+||.||++||||+.+.... .++.
T Consensus 6 ~~~~~v~~~i~~~~g-------------~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~-~~~~ 71 (156)
T PRK00714 6 GYRPNVGIILLNRQG-------------QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVE-ILAE 71 (156)
T ss_pred CCCCeEEEEEEecCC-------------EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceE-EEEE
Confidence 578899999998654 8999998654 779999999999999999999999999999865432 2333
Q ss_pred E----EEeeCCcc--cCCCCCCcEEEEEEEEEeCcc-cc----CCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHHHH
Q 027123 96 W----EFRSKSKQ--DLHSLEGGCRGYMFSLEVTEE-LE----IWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFMKV 164 (228)
Q Consensus 96 ~----~~~~~~~~--~~~~~~~~~~~~~f~~~~~~~-~~----~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l~~ 164 (228)
+ .|...... ...+.......++|.+..... .. ..++.|+.+++|++++++++++. +..+.+++.+++.
T Consensus 72 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~-~~~r~~~~~~~~~ 150 (156)
T PRK00714 72 TRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVV-PFKRDVYRRVLKE 150 (156)
T ss_pred cCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhch-hhhHHHHHHHHHH
Confidence 2 22211110 001111123456777766422 11 11346889999999999998865 3346777776665
Q ss_pred Hh
Q 027123 165 MS 166 (228)
Q Consensus 165 l~ 166 (228)
+.
T Consensus 151 ~~ 152 (156)
T PRK00714 151 FA 152 (156)
T ss_pred HH
Confidence 54
No 39
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.77 E-value=5.6e-18 Score=130.25 Aligned_cols=105 Identities=21% Similarity=0.268 Sum_probs=79.0
Q ss_pred CCcEEEEEEEEEeccCCCcccccccCCcceEEEEEeC---CCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeecccc
Q 027123 16 NNFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSP---NRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKP 92 (228)
Q Consensus 16 ~~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~---~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~ 92 (228)
++.+.+|++|+++.+ +|||+++. ..+.|.+|||+++.||++++||.||++||||+.+... +.
T Consensus 10 ~~~~~~v~~ii~~~~--------------~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~-~~ 74 (130)
T cd04511 10 QNPKIIVGCVPEWEG--------------KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEID-GL 74 (130)
T ss_pred CCCcEEEEEEEecCC--------------EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEee-eE
Confidence 466778888888642 79999985 3467999999999999999999999999999998655 34
Q ss_pred ceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHh
Q 027123 93 LGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAF 146 (228)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~ 146 (228)
++.+..+. .....++|.+....... ..+.|..+++|+++++++
T Consensus 75 ~~~~~~~~----------~~~~~~~f~~~~~~~~~-~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 75 YAVYSVPH----------ISQVYMFYRARLLDLDF-APGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEEEecCC----------ceEEEEEEEEEEcCCcc-cCCcchhceEEECHHHCC
Confidence 55543321 11345667777655432 245678899999999997
No 40
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.76 E-value=1.1e-17 Score=129.24 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=76.4
Q ss_pred CcceEEEEEeCC--CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeec---cccceEEEEeeCCcccCCCCCCcEEEE
Q 027123 42 TRIEVLMVSSPN--RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLN---EKPLGIWEFRSKSKQDLHSLEGGCRGY 116 (228)
Q Consensus 42 ~~~~vLLv~~~~--~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (228)
+..+|||+++.. .+.|.||||++++|||+.+||.||++||||+.+... ..+++.+.+....... ........++
T Consensus 11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (132)
T cd04661 11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR-NEGIVGAKVF 89 (132)
T ss_pred cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccc-cccCcccEEE
Confidence 456899999864 367999999999999999999999999999975532 1123444433221100 0111235678
Q ss_pred EEEEEeCccccCCCCCcceeeEEEehhhHhhhcCch
Q 027123 117 MFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 117 ~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
+|.+...+.... ...|+.+++|++++++..++..+
T Consensus 90 ~f~~~~~~g~~~-~~~e~~~~~W~~~~el~~~l~~~ 124 (132)
T cd04661 90 FFKARYMSGQFE-LSQNQVDFKWLAKEELQKYLNPP 124 (132)
T ss_pred EEEEEEecCccc-cCCCcceeEecCHHHHHhhcCHH
Confidence 888876654332 45788999999999999987654
No 41
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.1e-17 Score=126.54 Aligned_cols=94 Identities=22% Similarity=0.166 Sum_probs=68.1
Q ss_pred eEEEEEeCC-----CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEE
Q 027123 45 EVLMVSSPN-----RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFS 119 (228)
Q Consensus 45 ~vLLv~~~~-----~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~ 119 (228)
+|||++|.. .+.|.||||+++.|||+++||.||++||||+++.... .++.+.+... ....+++|.
T Consensus 12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~l~~~~~~~~---------~~~~~~~~~ 81 (117)
T cd04691 12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYT-YLCSLYHPTS---------ELQLLHYYV 81 (117)
T ss_pred EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccce-EEEEEeccCC---------CeEEEEEEE
Confidence 799998853 3579999999999999999999999999999864332 3444432211 123456677
Q ss_pred EEeCccccCCCCCcceeeEEEehhhHhhhcC
Q 027123 120 LEVTEELEIWPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 120 ~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~ 150 (228)
+....... ...|..++.|+++++++....
T Consensus 82 ~~~~~~~~--~~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 82 VTFWQGEI--PAQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred EEEecCCC--CcccccccEEcCHHHcchhhh
Confidence 66543322 347889999999999986544
No 42
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.76 E-value=1.1e-17 Score=129.05 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=69.0
Q ss_pred ceEEEEEeCC--CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEE
Q 027123 44 IEVLMVSSPN--RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLE 121 (228)
Q Consensus 44 ~~vLLv~~~~--~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 121 (228)
.+|||+++.. .+.|.+|||+++.|||+++||.||++||||+.+.... .++.+.+... .....+|.+.
T Consensus 12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~-~l~~~~~~~~----------~~~~~~f~~~ 80 (131)
T cd03429 12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIR-YVGSQPWPFP----------SSLMLGFTAE 80 (131)
T ss_pred CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeE-EEeecCCCCC----------ceEEEEEEEE
Confidence 4899998875 5779999999999999999999999999999976553 3443222111 1234556666
Q ss_pred eCccccCCCCCcceeeEEEehhhHhhh
Q 027123 122 VTEELEIWPEQENRYRKWLNIQDAFQL 148 (228)
Q Consensus 122 ~~~~~~~~~~~e~~~~~W~~~~el~~~ 148 (228)
.........+.|+.++.|++++++.++
T Consensus 81 ~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 81 ADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EcCCcccCCchhhhccEeecHHHHhhc
Confidence 554333334568889999999999873
No 43
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.75 E-value=3.6e-17 Score=126.06 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=81.1
Q ss_pred eEEEEEeCCC----CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEE
Q 027123 45 EVLMVSSPNR----SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSL 120 (228)
Q Consensus 45 ~vLLv~~~~~----~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 120 (228)
+|||++|+.. +.|.||||+++.|||+.+||.||++||||+.+... ..++.+.+..... ...+++|.+
T Consensus 16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~ 86 (135)
T PRK10546 16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVG-EYVASHQREVSGR--------RIHLHAWHV 86 (135)
T ss_pred EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccc-eeEEEEEEecCCc--------EEEEEEEEE
Confidence 7999998653 67999999999999999999999999999997654 2344444332211 133455555
Q ss_pred EeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHHHHHh
Q 027123 121 EVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFMKVMS 166 (228)
Q Consensus 121 ~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l~~l~ 166 (228)
....... ...+..+++|++++++..+...+.++.+++.+++..+
T Consensus 87 ~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~ 130 (135)
T PRK10546 87 PDFHGEL--QAHEHQALVWCTPEEALRYPLAPADIPLLEAFMALRA 130 (135)
T ss_pred EEecCcc--cccccceeEEcCHHHcccCCCCcCcHHHHHHHHHhhc
Confidence 4432211 2345678999999999999888888999988877644
No 44
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.7e-17 Score=125.35 Aligned_cols=99 Identities=21% Similarity=0.242 Sum_probs=67.5
Q ss_pred eEEEEEeCC----CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeecc-ccceEEEEeeCCcccCCCCCCcEEEEEEE
Q 027123 45 EVLMVSSPN----RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNE-KPLGIWEFRSKSKQDLHSLEGGCRGYMFS 119 (228)
Q Consensus 45 ~vLLv~~~~----~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~f~ 119 (228)
+|||+++.. .+.|.+|||+++.|||+.+||.||++||||+.+.... ..++.+.+..... .....++|.
T Consensus 12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~-------~~~~~~~f~ 84 (120)
T cd04683 12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDI-------ESRIGLFFT 84 (120)
T ss_pred EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCC-------ceEEEEEEE
Confidence 799998764 3579999999999999999999999999999875321 2244433222110 113345566
Q ss_pred EEeCcccc-CCCCCcceeeEEEehhhHhhhcC
Q 027123 120 LEVTEELE-IWPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 120 ~~~~~~~~-~~~~~e~~~~~W~~~~el~~~~~ 150 (228)
+....... ....+|+.+++|+++++++..+.
T Consensus 85 ~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 85 VRRWSGEPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEeecCccccCCCCcEeeEEEEchHHCcchhc
Confidence 65433222 22346788999999999987553
No 45
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=9.4e-18 Score=128.15 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=73.9
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEE
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWE 97 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~ 97 (228)
+|++|+++.++ +|||+++.. .+.|.+|||+++.|||+.+||.||++||||+++.... .++...
T Consensus 2 ~~~~vv~~~~~-------------~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~-~~~~~~ 67 (123)
T cd04671 2 IVAAVILNNQG-------------EVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTT-LLSVEE 67 (123)
T ss_pred EEEEEEEcCCC-------------EEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecce-EEEEEc
Confidence 67788887543 899998753 3579999999999999999999999999999987663 344321
Q ss_pred EeeCCcccCCCCCCcEEEEEEEEEeCccccC---CCCCcceeeEEEehhhHhhhc
Q 027123 98 FRSKSKQDLHSLEGGCRGYMFSLEVTEELEI---WPEQENRYRKWLNIQDAFQLC 149 (228)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~e~~~~~W~~~~el~~~~ 149 (228)
. . . ....++|.+...+.... .++.++.+++|+++++++..+
T Consensus 68 ~--~-~--------~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~ 111 (123)
T cd04671 68 Q--G-G--------SWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPL 111 (123)
T ss_pred c--C-C--------eEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCcc
Confidence 1 1 0 12345677765543211 134567799999999995333
No 46
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.7e-17 Score=125.99 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=68.8
Q ss_pred eEEEEEeCCC------CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEE
Q 027123 45 EVLMVSSPNR------SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMF 118 (228)
Q Consensus 45 ~vLLv~~~~~------~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f 118 (228)
+|||++|... |.|.+|||+++.|||+++||.||++||||+++..... .....+.... .....++|
T Consensus 13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--------~~~~~~~f 83 (122)
T cd04682 13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRI-PWFRVYPSAS--------PPGTEHVF 83 (122)
T ss_pred EEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccccccc-ceeEecccCC--------CCceEEEE
Confidence 8999988643 6799999999999999999999999999999754321 1222222110 12345677
Q ss_pred EEEeCccc-cCCCCCcceeeEEEehhhHhhhc
Q 027123 119 SLEVTEEL-EIWPEQENRYRKWLNIQDAFQLC 149 (228)
Q Consensus 119 ~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~ 149 (228)
.+...... .....+|+.+++|++++++.+..
T Consensus 84 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 84 VVPLTAREDAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred EEEEecCCCccccCchhheeecccHHHHhhcc
Confidence 77665432 33457788999999999997653
No 47
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.74 E-value=2.4e-17 Score=125.83 Aligned_cols=113 Identities=25% Similarity=0.270 Sum_probs=72.0
Q ss_pred EEEEEEEEeccCCCcccccccCCcceEEEEEe-------CCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeecccc
Q 027123 20 LVSGCIPYRLTKDAEDENEDTQTRIEVLMVSS-------PNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKP 92 (228)
Q Consensus 20 ~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~-------~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~ 92 (228)
+++|+|+|+..+ +.++|||+++ +..+.|++|||+++.||++.+||+||++||||+++......
T Consensus 1 ~~~g~v~~~~~~----------~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~~~~~~ 70 (126)
T cd04662 1 LSAGILLYRFRD----------GRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFID 70 (126)
T ss_pred CeEEEEEEEEcC----------CcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcceeeEEe
Confidence 478999999875 5789999985 44577999999999999999999999999999986522111
Q ss_pred ceEEEEeeCCcc-----cCCCCCCcEEEEEEEEEeCccccCCC-CCcceeeEEEeh
Q 027123 93 LGIWEFRSKSKQ-----DLHSLEGGCRGYMFSLEVTEELEIWP-EQENRYRKWLNI 142 (228)
Q Consensus 93 l~~~~~~~~~~~-----~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~ 142 (228)
+..+.+...... ....+.......+|.+.......... .+|..+.+|+++
T Consensus 71 l~~~~~~~~~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 71 LGSLKQSGGKVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred EEEEECCCCeEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 222211110000 00001112344555555443222222 478899999984
No 48
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.74 E-value=7.5e-17 Score=143.13 Aligned_cols=125 Identities=18% Similarity=0.266 Sum_probs=86.6
Q ss_pred cEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccce
Q 027123 18 FRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLG 94 (228)
Q Consensus 18 ~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~ 94 (228)
...+|++|+++.+ +|||++|.+ .+.|.+|||+++.|||+++||+||++||||+++.... ..+
T Consensus 202 ~~vtv~avv~~~g--------------~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~-l~~ 266 (340)
T PRK05379 202 TFVTVDAVVVQSG--------------HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPV-LRG 266 (340)
T ss_pred cceEEEEEEEECC--------------EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccc-cce
Confidence 3467778887632 799999865 4679999999999999999999999999999865432 122
Q ss_pred E------EEEeeCCcccCCCCCCcEEEEEEEEEeCccc--cCCCCCcceeeEEEehhhHhhh--cCchHHHHHHHHHHH
Q 027123 95 I------WEFRSKSKQDLHSLEGGCRGYMFSLEVTEEL--EIWPEQENRYRKWLNIQDAFQL--CRYEWMREALEKFMK 163 (228)
Q Consensus 95 ~------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~--~~~~~~~~~l~~~l~ 163 (228)
. |+++.+.. ......++|.+...... ....+++..+++|++++++..+ ..+++|..+|..++.
T Consensus 267 ~~~~~~~f~~p~r~~------~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~~ 339 (340)
T PRK05379 267 SIRDQQVFDHPGRSL------RGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFLG 339 (340)
T ss_pred eeeeeEEEcCCCCCC------CCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHhc
Confidence 2 22222111 11233455555544321 1224568899999999999875 566899999987753
No 49
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.73 E-value=5e-17 Score=125.65 Aligned_cols=111 Identities=23% Similarity=0.154 Sum_probs=79.2
Q ss_pred EEEEEEEEeccCCCcccccccCCcceEEEEEeCC----CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceE
Q 027123 20 LVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN----RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGI 95 (228)
Q Consensus 20 ~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~----~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~ 95 (228)
.+|++++++..+ ++||+++.. .+.|.+|||+++.|||+.+||+||++||||+.+... +.++.
T Consensus 3 ~~v~v~~~~~~~-------------~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~ 68 (137)
T cd03424 3 DAVAVLPYDDDG-------------KVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDL-EKLGS 68 (137)
T ss_pred CEEEEEEEcCCC-------------eEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccce-EEEee
Confidence 467788887644 899997643 246999999999999999999999999999997533 23444
Q ss_pred EEEeeCCcccCCCCCCcEEEEEEEEEeCccc--cCCCCCcceeeEEEehhhHhhhcCch
Q 027123 96 WEFRSKSKQDLHSLEGGCRGYMFSLEVTEEL--EIWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
+.+.... ....+++|.+...... ....+.|+.+++|++++++.+++...
T Consensus 69 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 69 FYPSPGF--------SDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred EecCCcc--------cCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 4322111 1134556666655433 23356789999999999999987754
No 50
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.73 E-value=3e-17 Score=130.44 Aligned_cols=111 Identities=16% Similarity=0.065 Sum_probs=75.0
Q ss_pred EEEEEEEEeccCCCcccccccCCcceEEEEEeCC-----CCCeEecccccCCC-CCHHHHHHHHHHHHhceeeeeccccc
Q 027123 20 LVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-----RSDLVFPKGGWEND-ETVMEAACREALEEAGVRGKLNEKPL 93 (228)
Q Consensus 20 ~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ie~g-Et~~eAA~REl~EETGl~~~~~~~~l 93 (228)
.++.+|++...+ +..+|||++|.. .+.|+||||+++.| ||+.+||+||++||||+++... ..+
T Consensus 2 ~~av~v~l~~~~----------~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~-~~l 70 (157)
T cd03426 2 RAAVLVLLVERE----------GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSV-EVL 70 (157)
T ss_pred ceEEEEEEEeCC----------CceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccce-EEE
Confidence 455566665543 356999999864 36799999999999 9999999999999999987654 234
Q ss_pred eEEEEeeCCcccCCCCCCcEEEEEEEEEeCcc-ccCCCCCcceeeEEEehhhHhhhc
Q 027123 94 GIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEE-LEIWPEQENRYRKWLNIQDAFQLC 149 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~ 149 (228)
+.+....... ...+++|.+.+... .......|+.++.|++++++.+..
T Consensus 71 ~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 119 (157)
T cd03426 71 GRLPPYYTRS--------GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDPA 119 (157)
T ss_pred EECCCccccC--------CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCcC
Confidence 4332111111 12344555554442 222234588999999999998753
No 51
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.72 E-value=8.4e-17 Score=130.79 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=77.8
Q ss_pred CcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeec--c-------------ccceEEEEeeCCcccC
Q 027123 42 TRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLN--E-------------KPLGIWEFRSKSKQDL 106 (228)
Q Consensus 42 ~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~--~-------------~~l~~~~~~~~~~~~~ 106 (228)
+.++||+++++..+.|.||||+++.||++.+||.||++||||+.+... + ..+++|.......+..
T Consensus 47 ~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~t 126 (186)
T cd03670 47 PILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNT 126 (186)
T ss_pred CeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCCCCC
Confidence 578999999999899999999999999999999999999997653211 0 0233443222221110
Q ss_pred CCCCCcEEEEEEEEEeCc---cccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHHHH
Q 027123 107 HSLEGGCRGYMFSLEVTE---ELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFMKV 164 (228)
Q Consensus 107 ~~~~~~~~~~~f~~~~~~---~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l~~ 164 (228)
.+.......++|...... .......++..+++|+++++++.+.+ +|..+|+++++.
T Consensus 127 d~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~--dH~~Il~~a~~~ 185 (186)
T cd03670 127 DNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYA--NHSQFLKKVAEL 185 (186)
T ss_pred CcceEEEEEEEEEecCcccccccccCCCCchheeEEEEccccccccc--CHHHHHHHHHHh
Confidence 000111222333332111 11222345789999999999986544 899999988764
No 52
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=7.4e-17 Score=123.30 Aligned_cols=107 Identities=22% Similarity=0.200 Sum_probs=72.3
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCCC-----CCeEec-ccccCCCCCHHHHHHHHHHHHhceeeeecc-ccc
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-----SDLVFP-KGGWENDETVMEAACREALEEAGVRGKLNE-KPL 93 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ie~gEt~~eAA~REl~EETGl~~~~~~-~~l 93 (228)
+|.+++++.++ +|||++|... |.|++| ||+++.|||+ +||+||++||||+.+.... ..+
T Consensus 2 ~v~v~~~~~~g-------------~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~ 67 (127)
T cd04693 2 VVHVCIFNSKG-------------ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPL 67 (127)
T ss_pred eEEEEEEeCCC-------------eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEE
Confidence 56666776443 8999887642 579998 9999999999 9999999999999976432 123
Q ss_pred eEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcC
Q 027123 94 GIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~ 150 (228)
+.+.+... . ...+++|.+.........+..|+.+++|++++++.+++.
T Consensus 68 ~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~ 115 (127)
T cd04693 68 FRYFFEAE--G-------FDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIG 115 (127)
T ss_pred EEEEeecC--C-------eEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHh
Confidence 43333221 0 122344444433222223456889999999999998865
No 53
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.71 E-value=1.6e-16 Score=127.28 Aligned_cols=118 Identities=18% Similarity=0.129 Sum_probs=81.1
Q ss_pred CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-----CCeEec-ccccCCCCCHHHHHHHHHHHHhceeeeecc
Q 027123 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-----SDLVFP-KGGWENDETVMEAACREALEEAGVRGKLNE 90 (228)
Q Consensus 17 ~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ie~gEt~~eAA~REl~EETGl~~~~~~ 90 (228)
..+.+|++++++.++ +|||++|... |.|.+| ||+++.|||+++||+||++||||+.+....
T Consensus 28 ~~~~~v~v~i~~~~~-------------~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~ 94 (165)
T cd02885 28 LLHRAFSVFLFNSKG-------------RLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLE 94 (165)
T ss_pred cceeEEEEEEEcCCC-------------cEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchh
Confidence 347788888887543 7999987642 558886 899999999999999999999999977553
Q ss_pred ccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCc
Q 027123 91 KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRY 151 (228)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 151 (228)
..++.+.|........ ......++|.+....... .+.+|+.+++|++++++..++..
T Consensus 95 ~~~~~~~~~~~~~~~~---~~~~i~~~f~~~~~~~~~-~~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 95 LVLPRFRYRAPDDGGL---VEHEIDHVFFARADVTLI-PNPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred hccceEEEEEEcCCCc---eeeEEEEEEEEEeCCCCC-CCccceeEEEEECHHHHHHHHHh
Confidence 2124554443221110 011234566666544333 25568899999999999988653
No 54
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.70 E-value=2.6e-16 Score=127.87 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=76.1
Q ss_pred ceEEEEEeCCC-----CCe-EecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEE
Q 027123 44 IEVLMVSSPNR-----SDL-VFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYM 117 (228)
Q Consensus 44 ~~vLLv~~~~~-----~~W-~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (228)
.+|||.+|... +.| .+|||++++|||+.+||.|||+||||+.+.... .++.+.+..... ....++
T Consensus 49 g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~-~~~~~~~~~~~~--------~~~~~~ 119 (180)
T PRK15393 49 GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFA-EHGQFYFEDENC--------RVWGAL 119 (180)
T ss_pred CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccce-eceeEEecCCCc--------eEEEEE
Confidence 38999887643 224 689999999999999999999999999854432 345543322111 122345
Q ss_pred EEEEeCccccCCCCCcceeeEEEehhhHhhhc--CchHHHHHHHHHHHHHhh
Q 027123 118 FSLEVTEELEIWPEQENRYRKWLNIQDAFQLC--RYEWMREALEKFMKVMSE 167 (228)
Q Consensus 118 f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~--~~~~~~~~l~~~l~~l~~ 167 (228)
|.+..... ......|+.++.|++++++.+++ ..+....++..++.+...
T Consensus 120 f~~~~~~~-~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l~~~~~ 170 (180)
T PRK15393 120 FSCVSHGP-FALQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWLTRNAK 170 (180)
T ss_pred EEEEeCCC-CCCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHHHhhcc
Confidence 55544332 22245688999999999999873 445556666666665543
No 55
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.5e-16 Score=121.68 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=76.9
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCC-----CCCeEe-cccccCCCCCHHHHHHHHHHHHhceeeeeccccce
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-----RSDLVF-PKGGWENDETVMEAACREALEEAGVRGKLNEKPLG 94 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-----~~~W~l-PgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~ 94 (228)
++.+++++.++ +|||++|.. .|.|++ |||+++.||++.+||+||++||||+.+... ..++
T Consensus 2 ~~~v~i~~~~~-------------~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l-~~~~ 67 (126)
T cd04697 2 ATYIFVFNSEG-------------KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQL-TPLG 67 (126)
T ss_pred eEEEEEEcCCC-------------eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcccc-EEee
Confidence 56778887644 899987753 356998 699999999999999999999999987644 3456
Q ss_pred EEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCc
Q 027123 95 IWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRY 151 (228)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 151 (228)
.+.+..... .....+|.+...... ...+.|..++.|++++++.+++..
T Consensus 68 ~~~~~~~~~--------~~~~~~f~~~~~~~~-~~~~~E~~~~~w~~~~el~~~~~~ 115 (126)
T cd04697 68 LFYYDTDGN--------RVWGKVFSCVYDGPL-KLQEEEVEEITWLSINEILQFKEG 115 (126)
T ss_pred EEEecCCCc--------eEEEEEEEEEECCCC-CCCHhHhhheEEcCHHHHHHHhhc
Confidence 665432211 123345666554332 234568899999999999987653
No 56
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.70 E-value=4.9e-16 Score=118.15 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=76.0
Q ss_pred eEEEEEeCCC----CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEE
Q 027123 45 EVLMVSSPNR----SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSL 120 (228)
Q Consensus 45 ~vLLv~~~~~----~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 120 (228)
+|||.+|+.. |.|.||||+++.||++.+||.||++||||+.+.... .++.+.+..... ...+.+|.+
T Consensus 17 ~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~ 87 (129)
T PRK10776 17 EIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHAT-LFEKLEYEFPDR--------HITLWFWLV 87 (129)
T ss_pred EEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecce-EEEEEEeeCCCc--------EEEEEEEEE
Confidence 8999998753 679999999999999999999999999999865442 344444332211 134455655
Q ss_pred EeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHH
Q 027123 121 EVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFM 162 (228)
Q Consensus 121 ~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l 162 (228)
...... . ...|..+++|+++++++.....+.++.+++.++
T Consensus 88 ~~~~~~-~-~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~~ 127 (129)
T PRK10776 88 ESWEGE-P-WGKEGQPGRWVSQVALNADEFPPANEPIIAKLK 127 (129)
T ss_pred EEECCc-c-CCccCCccEEecHHHCccCCCCcccHHHHHHHH
Confidence 433221 1 234677889999999999877777777776553
No 57
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=3.4e-16 Score=122.65 Aligned_cols=107 Identities=22% Similarity=0.205 Sum_probs=69.4
Q ss_pred eEEEEEeCC-----CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeec---cccceEEEEeeCC--cccCCCCCCcEE
Q 027123 45 EVLMVSSPN-----RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLN---EKPLGIWEFRSKS--KQDLHSLEGGCR 114 (228)
Q Consensus 45 ~vLLv~~~~-----~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~---~~~l~~~~~~~~~--~~~~~~~~~~~~ 114 (228)
+|||++|.. .+.|.+|||++++||++.+||+||++||||+.+... .+.++++.+.... ..... ......
T Consensus 14 ~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~ 92 (143)
T cd04694 14 KLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLP-KRHHIV 92 (143)
T ss_pred EEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCcc-cceeEE
Confidence 899998864 356999999999999999999999999999987643 1345555432221 11100 011122
Q ss_pred EEEEEEEeCcc-----ccCCCCCcceeeEEEehhhHhhhcCch
Q 027123 115 GYMFSLEVTEE-----LEIWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 115 ~~~f~~~~~~~-----~~~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
+++|....... .......|+.+++|++++++.+.+.+.
T Consensus 93 ~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~ 135 (143)
T cd04694 93 VYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAE 135 (143)
T ss_pred EEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhh
Confidence 33333222111 011234689999999999999988754
No 58
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.68 E-value=5.4e-16 Score=132.46 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=75.1
Q ss_pred eEEEEEeCC--CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEEe
Q 027123 45 EVLMVSSPN--RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEV 122 (228)
Q Consensus 45 ~vLLv~~~~--~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 122 (228)
++||+++.. .+.|.+|||+++.|||+++||.||++||||+++... ..++.+.+... ...++.|.+..
T Consensus 144 ~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~-~~~~s~~~~~p----------~~lm~~f~a~~ 212 (256)
T PRK00241 144 EILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNL-RYVGSQPWPFP----------HSLMLGFHADY 212 (256)
T ss_pred EEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeee-EEEEeEeecCC----------CeEEEEEEEEe
Confidence 899998753 467999999999999999999999999999997655 23444322211 12345666666
Q ss_pred CccccCCCCCcceeeEEEehhhHhhhcCchHH-HHHHHHHH
Q 027123 123 TEELEIWPEQENRYRKWLNIQDAFQLCRYEWM-REALEKFM 162 (228)
Q Consensus 123 ~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~-~~~l~~~l 162 (228)
........+.|+.+++|+++++++.+...... +.+++.++
T Consensus 213 ~~~~~~~~~~Ei~~a~W~~~del~~lp~~~sia~~li~~~~ 253 (256)
T PRK00241 213 DSGEIVFDPKEIADAQWFRYDELPLLPPSGTIARRLIEDTV 253 (256)
T ss_pred cCCcccCCcccEEEEEEECHHHCcccCCchHHHHHHHHHHH
Confidence 54433334568899999999999887554432 34444443
No 59
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=5.7e-16 Score=117.89 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=65.6
Q ss_pred eEEEEEeCC-----CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEE
Q 027123 45 EVLMVSSPN-----RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFS 119 (228)
Q Consensus 45 ~vLLv~~~~-----~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~ 119 (228)
+|||++|.. .+.|.+|||+++.|||+.+||.||++||||+.+.... .++.+.+..... ......++|.
T Consensus 14 ~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~ 86 (129)
T cd04699 14 RILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFL-RYPSTVTHEDSG------VYNVIYLVFV 86 (129)
T ss_pred cEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeee-eeeEEEEEcCCC------EEEEEEEEEE
Confidence 799998864 3569999999999999999999999999999876553 222222221111 0112334455
Q ss_pred EEeCccccCCCCCcceeeEEEehhhHhhhcC
Q 027123 120 LEVTEELEIWPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 120 ~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~ 150 (228)
+...... ...+.|..+++|++++++..+..
T Consensus 87 ~~~~~~~-~~~~~e~~~~~w~~~~el~~~~~ 116 (129)
T cd04699 87 CEALSGA-VKLSDEHEEYAWVTLEELAILKA 116 (129)
T ss_pred eeecCCc-ccCChhheEEEEecHHHhhhhhc
Confidence 4433221 22456788999999999865543
No 60
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=4.6e-16 Score=121.67 Aligned_cols=119 Identities=17% Similarity=0.117 Sum_probs=79.1
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-----CCeEe-cccccCCCCCHHHHHHHHHHHHhceeeeecc-c
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-----SDLVF-PKGGWENDETVMEAACREALEEAGVRGKLNE-K 91 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-----~~W~l-PgG~ie~gEt~~eAA~REl~EETGl~~~~~~-~ 91 (228)
.++|.|++++..+ ++.++|+.+|... |.|.+ |||+++.|||+.+||+||++||||+.+.... .
T Consensus 2 h~~v~~~v~~~~~----------~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~ 71 (144)
T cd04692 2 HRTFHCWIITKDE----------GKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLI 71 (144)
T ss_pred ceEEEEEEEEccC----------CCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeE
Confidence 4677888888754 4568888887642 56998 5999999999999999999999999864321 2
Q ss_pred cceEEEEeeCCcccCCCCCCcEEEEEEEEEeCc--cccCCCCCcceeeEEEehhhHhhhcC
Q 027123 92 PLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTE--ELEIWPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~ 150 (228)
.++.+.+........ ......++|.+.... ......+.|+.+++|++++++.+++.
T Consensus 72 ~~~~~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 129 (144)
T cd04692 72 PLGTFKIEYDHIGKL---IDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLE 129 (144)
T ss_pred EeeEEEEeccccCCC---ccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHH
Confidence 345554432211000 011234556665443 22223457889999999999988754
No 61
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.68 E-value=4.8e-16 Score=115.97 Aligned_cols=110 Identities=25% Similarity=0.341 Sum_probs=80.5
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCC--CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEE
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN--RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEF 98 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~--~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~ 98 (228)
++++|+++.. .++||+++.. .+.|.+|||+++.||++.++|.||++||+|+.+... ...+.+.+
T Consensus 2 ~~~~i~~~~~-------------~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~-~~~~~~~~ 67 (123)
T cd02883 2 AVGAVILDED-------------GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL-RLLGVYEV 67 (123)
T ss_pred ceEEEEECCC-------------CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceee-eEEEEEEe
Confidence 5677777653 3799999988 688999999999999999999999999999987643 23555555
Q ss_pred eeCCcccCCCCCCcEEEEEEEEEeCccccC-CCCCcceeeEEEehhhHhhhcC
Q 027123 99 RSKSKQDLHSLEGGCRGYMFSLEVTEELEI-WPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~ 150 (228)
..... ......++|.+.+...... ..+.+..+.+|++++++.+...
T Consensus 68 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~~~ 114 (123)
T cd02883 68 ESPDE------GEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPALAL 114 (123)
T ss_pred eccCC------CceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccccc
Confidence 43321 1235667787776654331 3456778899999999987544
No 62
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.67 E-value=1.7e-15 Score=113.83 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=77.5
Q ss_pred ceEEEEEeCC----CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEE
Q 027123 44 IEVLMVSSPN----RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFS 119 (228)
Q Consensus 44 ~~vLLv~~~~----~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~ 119 (228)
.++||++|+. .+.|.||||+++.+|++.+||.||++||||+.+... ..++.+.+.... ....+++|.
T Consensus 13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~ 83 (124)
T cd03425 13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG-ELLATVEHDYPD--------KRVTLHVFL 83 (124)
T ss_pred CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEecc-ceEEEEEeeCCC--------CeEEEEEEE
Confidence 3899998864 356999999999999999999999999999997654 345555433321 124456666
Q ss_pred EEeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHH
Q 027123 120 LEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEK 160 (228)
Q Consensus 120 ~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 160 (228)
+....... ...+..+++|++++++..+...+.++.+++.
T Consensus 84 ~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 122 (124)
T cd03425 84 VELWSGEP--QLLEHQELRWVPPEELDDLDFPPADVPIVAA 122 (124)
T ss_pred EeeeCCCc--ccccCceEEEeeHHHcccCCCCcccHHHHHh
Confidence 65443322 2456788999999999998877777766653
No 63
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=4.3e-15 Score=113.09 Aligned_cols=105 Identities=15% Similarity=0.024 Sum_probs=74.2
Q ss_pred eEEEEEeCCC----CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEE
Q 027123 45 EVLMVSSPNR----SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSL 120 (228)
Q Consensus 45 ~vLLv~~~~~----~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 120 (228)
+|||.+|+.. +.|.||||+++.|||+.+||.||+.||||+.+.... .++.+.+.... ....+++|.+
T Consensus 17 ~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~-~~~~~~h~~~~--------~~~~~~~~~~ 87 (128)
T TIGR00586 17 EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSE-FEKLEYEFYPR--------HITLWFWLLE 87 (128)
T ss_pred EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeee-EEEEEEEECCC--------cEEEEEEEEE
Confidence 7999888653 569999999999999999999999999999876552 34444332221 1234566666
Q ss_pred EeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHH
Q 027123 121 EVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEK 160 (228)
Q Consensus 121 ~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 160 (228)
...+... ...+..++.|++++++.+...+..++.+++.
T Consensus 88 ~~~~~~~--~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~~ 125 (128)
T TIGR00586 88 RWEGGPP--GKEGQPEEWWVLVGLLADDFFPAANPVIIKL 125 (128)
T ss_pred EEcCCCc--CcccccccEEeCHHHCCccCCCCCCHHHHHH
Confidence 5543221 2335667899999999998776666666543
No 64
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.65 E-value=1.9e-15 Score=123.20 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=78.9
Q ss_pred CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-----CCeEec-ccccCCCCCHHHHHHHHHHHHhceeeeecc
Q 027123 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-----SDLVFP-KGGWENDETVMEAACREALEEAGVRGKLNE 90 (228)
Q Consensus 17 ~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ie~gEt~~eAA~REl~EETGl~~~~~~ 90 (228)
....+|++++++.++ +|||++|... |.|.+| ||+++.|||+++||+||++||||+++....
T Consensus 32 ~~h~av~v~i~~~~g-------------~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~ 98 (184)
T PRK03759 32 PLHLAFSCYLFDADG-------------RLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLE 98 (184)
T ss_pred CeeeEEEEEEEcCCC-------------eEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccc
Confidence 456778888887543 8999987532 346654 799999999999999999999999875332
Q ss_pred ccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcC
Q 027123 91 KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~ 150 (228)
..++.+.|........ ......++|.+..... ......|+.+++|++++++.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~---~~~~~~~vf~~~~~~~-~~~~~~Ev~~~~W~~~~el~~~i~ 154 (184)
T PRK03759 99 LVLPDFRYRATDPNGI---VENEVCPVFAARVTSA-LQPNPDEVMDYQWVDPADLLRAVD 154 (184)
T ss_pred cccceEEEEEecCCCc---eeeEEEEEEEEEECCC-CCCChhHeeeEEEECHHHHHHHHH
Confidence 3345555432221110 1112345677765532 222346889999999999998765
No 65
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=2e-15 Score=116.93 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=75.8
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCC-----CCCeEecccccCCCCCHHHHHHHHHHHHhceee-eeccccce
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-----RSDLVFPKGGWENDETVMEAACREALEEAGVRG-KLNEKPLG 94 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~-~~~~~~l~ 94 (228)
++++++++.++ +|||+++.. .+.|.+|||+++.||++.+||.||++||||+.+ ... ..+.
T Consensus 2 ~~~~~i~~~~g-------------~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~-~~~~ 67 (133)
T cd04685 2 AARVVLLDPDD-------------RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLG-PPVW 67 (133)
T ss_pred eEEEEEEcCCC-------------eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcccccc-ceEE
Confidence 57888998654 899998754 246999999999999999999999999999987 443 2233
Q ss_pred EEE--EeeCCcccCCCCCCcEEEEEEEEEeCcccc---CC--C-CCcceeeEEEehhhHhhh--cCch
Q 027123 95 IWE--FRSKSKQDLHSLEGGCRGYMFSLEVTEELE---IW--P-EQENRYRKWLNIQDAFQL--CRYE 152 (228)
Q Consensus 95 ~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~--~-~~e~~~~~W~~~~el~~~--~~~~ 152 (228)
... +..... ......++|.+....... .. . ..+...++|++++++... ..+|
T Consensus 68 ~~~~~f~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~~~~~~P 129 (133)
T cd04685 68 RRDAAFTFLGV------DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAATPETVYP 129 (133)
T ss_pred EEEEEEEecCc------cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhCCCccCC
Confidence 322 221111 112345678877654211 11 1 123467899999999886 4444
No 66
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.64 E-value=2.6e-15 Score=119.45 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=78.8
Q ss_pred CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-----CCeEec-ccccCCCCCHHHHHHHHHHHHhceeeeecc
Q 027123 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-----SDLVFP-KGGWENDETVMEAACREALEEAGVRGKLNE 90 (228)
Q Consensus 17 ~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ie~gEt~~eAA~REl~EETGl~~~~~~ 90 (228)
..+.+|++++++..+ +|||.+|... |.|++| ||+++.|| .+||+||++||||+.+....
T Consensus 25 ~~h~~v~v~v~~~~g-------------~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~ 89 (158)
T TIGR02150 25 PLHRAFSVFLFNEEG-------------QLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVP 89 (158)
T ss_pred CeEEEEEEEEEcCCC-------------eEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccc
Confidence 456677888887543 8999887652 669887 79999999 49999999999999876442
Q ss_pred -ccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCch
Q 027123 91 -KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 91 -~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
..++.+.|...... ......++|.+..... ....+.|+.++.|++++++.+++..+
T Consensus 90 l~~~~~~~~~~~~~~-----g~~~~~~~f~~~~~~~-~~~~~~Ev~~~~W~~~~el~~~~~~~ 146 (158)
T TIGR02150 90 LTVLPRFSYRARDAW-----GEHELCPVFFARAPVP-LNPNPEEVAEYRWVSLEELKEILKAP 146 (158)
T ss_pred eEEcceEEEEEecCC-----CcEEEEEEEEEecCCc-ccCChhHeeeEEEeCHHHHHHHHhcC
Confidence 12344444332211 1124456676665442 22234599999999999999987644
No 67
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.64 E-value=2.8e-15 Score=113.76 Aligned_cols=91 Identities=22% Similarity=0.208 Sum_probs=69.4
Q ss_pred eEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCc
Q 027123 45 EVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTE 124 (228)
Q Consensus 45 ~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (228)
++||++++. +.|.+|||+++.||++++||.||++||||+.+... .+++.+.+..... .....+|.+.+..
T Consensus 12 ~vLl~~~~~-~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~-~~l~~~~~~~~~~--------~~~~~~y~a~~~~ 81 (118)
T cd04665 12 GLLLVRHKD-RGWEFPGGHVEPGETIEEAARREVWEETGAELGSL-TLVGYYQVDLFES--------GFETLVYPAVSAQ 81 (118)
T ss_pred EEEEEEeCC-CEEECCccccCCCCCHHHHHHHHHHHHHCCccCce-EEEEEEEecCCCC--------cEEEEEEEEEEEe
Confidence 799998874 56999999999999999999999999999998555 3567665443211 2345667776665
Q ss_pred cccCCCCCcceeeEEEehhhH
Q 027123 125 ELEIWPEQENRYRKWLNIQDA 145 (228)
Q Consensus 125 ~~~~~~~~e~~~~~W~~~~el 145 (228)
.....+..|+....|++....
T Consensus 82 ~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 82 LEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred cccccccccccCcEEeccCCc
Confidence 444447889999999987655
No 68
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.62 E-value=6.1e-15 Score=120.27 Aligned_cols=101 Identities=23% Similarity=0.107 Sum_probs=70.0
Q ss_pred eEEEEEeCC----CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEE
Q 027123 45 EVLMVSSPN----RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSL 120 (228)
Q Consensus 45 ~vLLv~~~~----~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 120 (228)
+|||+++.. ...|+||||.+|+||++++||+||++||||+.+.... .++.+....... ...+++|.+
T Consensus 60 ~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~-~l~~~~~~~~~~--------~~~~~~f~a 130 (185)
T PRK11762 60 TLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLT-FLKELSLAPSYF--------SSKMNIVLA 130 (185)
T ss_pred EEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceE-EEEEEecCCCcc--------CcEEEEEEE
Confidence 799998742 2349999999999999999999999999999987663 466553322211 134455555
Q ss_pred EeCccc-cCCCCCcceeeEEEehhhHhhhcCchHH
Q 027123 121 EVTEEL-EIWPEQENRYRKWLNIQDAFQLCRYEWM 154 (228)
Q Consensus 121 ~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~ 154 (228)
...... ....+.|..++.|++++++.+++.....
T Consensus 131 ~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g~i 165 (185)
T PRK11762 131 EDLYPERLEGDEPEPLEVVRWPLADLDELLARPDF 165 (185)
T ss_pred EccccccCCCCCCceeEEEEEcHHHHHHHHHcCCC
Confidence 533221 1223456678899999999998765433
No 69
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.57 E-value=2.4e-14 Score=109.58 Aligned_cols=44 Identities=34% Similarity=0.382 Sum_probs=39.1
Q ss_pred cceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeee
Q 027123 43 RIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGK 87 (228)
Q Consensus 43 ~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~ 87 (228)
.++||+.+.+. +.|.||||+++.|||+.+||.||++||||+.+.
T Consensus 13 ~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~ 56 (126)
T cd04663 13 VLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSF 56 (126)
T ss_pred eEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeee
Confidence 46888887766 559999999999999999999999999999973
No 70
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.55 E-value=5.5e-14 Score=114.68 Aligned_cols=112 Identities=21% Similarity=0.098 Sum_probs=77.1
Q ss_pred EEEEEEEEeccCCCcccccccCCcceEEEEEeCC---------CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeecc
Q 027123 20 LVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN---------RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNE 90 (228)
Q Consensus 20 ~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~---------~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~ 90 (228)
.+|++|++... ..+|||+++.+ ...|.+|||+++.||++++||+||++||||+.+....
T Consensus 45 ~~v~vl~~~~~------------~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~ 112 (185)
T TIGR00052 45 NAAAVLLYDPK------------KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLR 112 (185)
T ss_pred CeEEEEEEECC------------CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceE
Confidence 36677777543 23899997632 2348999999999999999999999999999986552
Q ss_pred ccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccc----cCCCCCcceeeEEEehhhHhhhcCch
Q 027123 91 KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEEL----EIWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
.++.+...+. .....+++|.+.+.... ....+.|..++.|++++++.+++...
T Consensus 113 -~~~~~~~~~g--------~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 113 -KLLSFYSSPG--------GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred -EEEEEEcCCC--------CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 3443321111 11245678888765422 11134556788999999999987654
No 71
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.54 E-value=2.5e-13 Score=107.62 Aligned_cols=94 Identities=27% Similarity=0.280 Sum_probs=68.9
Q ss_pred eEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCc
Q 027123 45 EVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTE 124 (228)
Q Consensus 45 ~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 124 (228)
++||+++... .|.+|||++++|||+.+||.||++||||+.+... ..++.|....... .....+|.+.+..
T Consensus 36 ~~LL~~~~~~-~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~-~~lg~~~~~~~~~--------~~~~~vf~A~~~~ 105 (156)
T TIGR02705 36 QWLLTEHKRR-GLEFPGGKVEPGETSKEAAIREVMEETGAIVKEL-HYIGQYEVEGEST--------DFVKDVYFAEVSA 105 (156)
T ss_pred EEEEEEEcCC-cEECCceecCCCCCHHHHHHHHHHHHhCcEeeee-EEEEEEEecCCCc--------EEEEEEEEEEEec
Confidence 7999987764 4999999999999999999999999999998766 3577665433221 2345677777663
Q ss_pred cccCCCCCcceeeE-EEehhhHhhhcCc
Q 027123 125 ELEIWPEQENRYRK-WLNIQDAFQLCRY 151 (228)
Q Consensus 125 ~~~~~~~~e~~~~~-W~~~~el~~~~~~ 151 (228)
.. +..+..+.. +++++++++.+..
T Consensus 106 ~~---~~~e~~E~~~~~~~~~~~~~~~~ 130 (156)
T TIGR02705 106 LE---SKDDYLETKGPVLLQEIPDIIKA 130 (156)
T ss_pred cc---cCCCceeeEeEEEHHHHHHHHhc
Confidence 32 235555555 8999999887543
No 72
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=1.8e-13 Score=103.81 Aligned_cols=44 Identities=36% Similarity=0.416 Sum_probs=37.6
Q ss_pred eEEEEEeCC---CCCeEecccccCCCCCHHHHHHHHHHHHhceeeee
Q 027123 45 EVLMVSSPN---RSDLVFPKGGWENDETVMEAACREALEEAGVRGKL 88 (228)
Q Consensus 45 ~vLLv~~~~---~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~ 88 (228)
++||+++.. .+.|.||||+++.|||+.+||.||++||||+++..
T Consensus 16 ~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 16 GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 367776643 36799999999999999999999999999998653
No 73
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.52 E-value=2.2e-13 Score=110.43 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=78.8
Q ss_pred cEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-----CCe-EecccccCCCCCHHHHHHHHHHHHhceeeeecc-
Q 027123 18 FRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-----SDL-VFPKGGWENDETVMEAACREALEEAGVRGKLNE- 90 (228)
Q Consensus 18 ~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-----~~W-~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~- 90 (228)
...+|-+.+|..+.+ +..++++.||... |.| .+|+|+++.|||+.+||+||++||||+.+....
T Consensus 31 ~h~~v~~~~~~~~~~---------~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~ 101 (180)
T cd03676 31 VTYGVHLNGYVRDED---------GGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ 101 (180)
T ss_pred eEEEEEEEEEEEcCC---------CCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh
Confidence 444555555654321 2468888777542 568 599999999999999999999999999865432
Q ss_pred -ccceEEEEeeC-CcccCCCCCCcEEEEEEEEEeCccc-cCCCCCcceeeEEEehhhHhhhcCc
Q 027123 91 -KPLGIWEFRSK-SKQDLHSLEGGCRGYMFSLEVTEEL-EIWPEQENRYRKWLNIQDAFQLCRY 151 (228)
Q Consensus 91 -~~l~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~ 151 (228)
..++.+.|... .... ......++|.+.+.... ....+.|+.++.|++++|+.+++..
T Consensus 102 l~~~g~~~~~~~~~~~~----~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~ 161 (180)
T cd03676 102 LKPVGVVSYLREGEAGG----LQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKE 161 (180)
T ss_pred ceeccEEEEEEEcCCCc----EeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHc
Confidence 13454444332 1111 11234566776654332 2224568999999999999988654
No 74
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.52 E-value=2.1e-13 Score=112.73 Aligned_cols=112 Identities=22% Similarity=0.211 Sum_probs=75.5
Q ss_pred EEEEEEEEeccCCCcccccccCCcceEEEEEeCCC---------CCeEecccccCCCCCHHHHHHHHHHHHhceeeeecc
Q 027123 20 LVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR---------SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNE 90 (228)
Q Consensus 20 ~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~---------~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~ 90 (228)
-+|++|++... ..+|||++.-.. -.|++|+|.+|+||++++||+|||.||||+.+....
T Consensus 50 ~~V~il~~~~~------------~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~ 117 (202)
T PRK10729 50 HAAVLLPFDPV------------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTK 117 (202)
T ss_pred CeEEEEEEECC------------CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEE
Confidence 36777777642 238999965321 139999999999999999999999999999976553
Q ss_pred ccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCc----cc-cCCCCCcceeeEEEehhhHhhhcCch
Q 027123 91 KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTE----EL-EIWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~~-~~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
.++.+...+.. ....+++|.+.... .. ....+.|..++.|++++++.+++...
T Consensus 118 -~l~~~~~spg~--------~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G 175 (202)
T PRK10729 118 -PVLSYLASPGG--------TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 175 (202)
T ss_pred -EEEEEEcCCCc--------CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence 34433211111 12456777776422 11 11234566789999999999987644
No 75
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.52 E-value=1.8e-13 Score=112.09 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=74.9
Q ss_pred CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC-----CCCeEecccccCCC-CCHHHHHHHHHHHHhceeeeecc
Q 027123 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-----RSDLVFPKGGWEND-ETVMEAACREALEEAGVRGKLNE 90 (228)
Q Consensus 17 ~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ie~g-Et~~eAA~REl~EETGl~~~~~~ 90 (228)
..+.+|++|++...+ ...|||++|.. .|.|+||||++|++ |++++||+||++||||+.....
T Consensus 28 ~~~~aavvl~l~~~~-----------~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~- 95 (190)
T PRK10707 28 NQRQAAVLIPIVRRP-----------QPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAV- 95 (190)
T ss_pred cCCCeEEEEEEEECC-----------CCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccce-
Confidence 355677777775332 34788888542 36799999999985 6899999999999999987655
Q ss_pred ccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCC-CCCcceeeEEEehhhHhhhcC
Q 027123 91 KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIW-PEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~ 150 (228)
..++.+........ ..+..|.+.+....... ...|..++.|++++++.++..
T Consensus 96 ~~lg~l~~~~~~~~--------~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~ 148 (190)
T PRK10707 96 EVIGVLPPVDSSTG--------YQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR 148 (190)
T ss_pred EEEEEeeeeeccCC--------cEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence 34666542222111 22333333333222222 346888999999999887643
No 76
>PRK08999 hypothetical protein; Provisional
Probab=99.50 E-value=3.9e-13 Score=117.85 Aligned_cols=106 Identities=20% Similarity=0.157 Sum_probs=75.5
Q ss_pred eEEEEEeCC----CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEE
Q 027123 45 EVLMVSSPN----RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSL 120 (228)
Q Consensus 45 ~vLLv~~~~----~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 120 (228)
+|||.+|+. .|.|.||||+++.||++.+||.||++||||+.+.... .++.+.+..... ...+++|.+
T Consensus 18 ~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~l~~~~h~~~~~--------~~~i~~y~~ 88 (312)
T PRK08999 18 RILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAAR-PLITVRHDYPDK--------RVRLDVRRV 88 (312)
T ss_pred eEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecce-eEEEEEEEcCCC--------eEEEEEEEE
Confidence 799998865 3679999999999999999999999999999876542 344444332211 134556655
Q ss_pred EeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHH
Q 027123 121 EVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKF 161 (228)
Q Consensus 121 ~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~ 161 (228)
...... ....+..+++|++++++.++...+.++.+++.+
T Consensus 89 ~~~~~~--~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 89 TAWQGE--PHGREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred EEecCc--ccCccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 433221 234567788999999999987777666666544
No 77
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.41 E-value=4e-12 Score=104.17 Aligned_cols=112 Identities=17% Similarity=0.061 Sum_probs=74.6
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC--------CC--eEecccccCCCCCHHHHHHHHHHHHhceeeee
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR--------SD--LVFPKGGWENDETVMEAACREALEEAGVRGKL 88 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~--------~~--W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~ 88 (228)
+-+|++|++... ..+|||+++-+. +. |++|+|.++.| ++++||+|||.||||+.+..
T Consensus 45 ~~~v~Vl~~~~~------------~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~ 111 (191)
T PRK15009 45 GNGATILLYNAK------------KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGE 111 (191)
T ss_pred CCEEEEEEEECC------------CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccce
Confidence 346777777642 238999976332 22 89999999976 69999999999999998765
Q ss_pred ccccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCcc--cc--CCCCCcceeeEEEehhhHhhhcCch
Q 027123 89 NEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEE--LE--IWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 89 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~--~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
.. .++.+ |+..... ...+++|.+..... .. ...+.|.-++.|++++++.+++...
T Consensus 112 ~~-~l~~~-~~spG~s-------~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 112 VR-KLFEL-YMSPGGV-------TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred EE-EeeEE-EcCCccc-------CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 53 35443 2222111 13467777765321 11 1124566789999999999987543
No 78
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.40 E-value=7.8e-13 Score=112.57 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=66.7
Q ss_pred eEEEEEeCC--CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEEe
Q 027123 45 EVLMVSSPN--RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEV 122 (228)
Q Consensus 45 ~vLLv~~~~--~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 122 (228)
++||.++.. .+.+++-.|+||+|||+++|+.||++||+|+++...+ |..++.+.. +....+. |.+++
T Consensus 156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vr-------Y~~SQPWPf---P~SLMig-f~aey 224 (279)
T COG2816 156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVR-------YVGSQPWPF---PHSLMLG-FMAEY 224 (279)
T ss_pred ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeee-------EEeccCCCC---chhhhhh-heeee
Confidence 478886653 5779999999999999999999999999999987653 443333221 1111223 44455
Q ss_pred CccccCCCCCcceeeEEEehhhHhhhcC
Q 027123 123 TEELEIWPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 123 ~~~~~~~~~~e~~~~~W~~~~el~~~~~ 150 (228)
.++.......|..+++||+.+|+...+.
T Consensus 225 ~sgeI~~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 225 DSGEITPDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred ccccccCCcchhhhccccCHhHHhhhcC
Confidence 5444444457999999999999555544
No 79
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.36 E-value=1e-11 Score=94.69 Aligned_cols=105 Identities=27% Similarity=0.276 Sum_probs=65.7
Q ss_pred ceEEEEEeCCCC-CeEecccccCCCCCHHH-HHHHHHHHHhceeeee--ccccceEEEEeeCCcccCCCCCCcEEEEEEE
Q 027123 44 IEVLMVSSPNRS-DLVFPKGGWENDETVME-AACREALEEAGVRGKL--NEKPLGIWEFRSKSKQDLHSLEGGCRGYMFS 119 (228)
Q Consensus 44 ~~vLLv~~~~~~-~W~lPgG~ie~gEt~~e-AA~REl~EETGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~ 119 (228)
.+||+.+++..+ .|.+|||+++.||++.+ ||+||++||||+.+.. . ..++.+.......... .......++.
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~ 99 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERL-ELLGEFPPSPGDGSSV---GGREHRVFFV 99 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecc-eeeeeccCcccCcccc---cceEEEEEEe
Confidence 489999998876 89999999999999988 9999999999999773 2 2233332211111100 0011122222
Q ss_pred EEeC--ccccCCC----CCcceeeEEEehhhHhhhcCch
Q 027123 120 LEVT--EELEIWP----EQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 120 ~~~~--~~~~~~~----~~e~~~~~W~~~~el~~~~~~~ 152 (228)
.... ....... ..+...+.|++++++.......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 138 (161)
T COG0494 100 AEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE 138 (161)
T ss_pred eeccccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence 2211 1111111 2578899999999998876643
No 80
>PLN02709 nudix hydrolase
Probab=99.33 E-value=1.3e-11 Score=102.76 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=74.7
Q ss_pred CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC-----CCCeEecccccCCC-CCHHHHHHHHHHHHhceeeeecc
Q 027123 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-----RSDLVFPKGGWEND-ETVMEAACREALEEAGVRGKLNE 90 (228)
Q Consensus 17 ~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ie~g-Et~~eAA~REl~EETGl~~~~~~ 90 (228)
..|.++..|++...+. ..+++.+|||++|.. .|.|+||||++|++ +++.+||+||++||+|+.....
T Consensus 30 ~~r~AAVLv~l~~~~~------~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v- 102 (222)
T PLN02709 30 PAKSSAVLVCLYQEQR------EDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLV- 102 (222)
T ss_pred CCCccEEEEEEeeccC------CCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchhe-
Confidence 4555665665543210 001467899998864 47799999999996 5799999999999999986543
Q ss_pred ccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCc--ccc-CCCCCcceeeEEEehhhHhhh
Q 027123 91 KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTE--ELE-IWPEQENRYRKWLNIQDAFQL 148 (228)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~-~~~~~e~~~~~W~~~~el~~~ 148 (228)
..+|......... ...+.-|.+.+.. ... .....|..++-|++++.+.+.
T Consensus 103 ~vlg~L~~~~t~s--------g~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 103 TIISVLEPFVNKK--------GMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred EEeeecCCeECCC--------CCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 2355443221111 1334555554432 222 123469999999999998653
No 81
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.33 E-value=5.2e-12 Score=101.49 Aligned_cols=131 Identities=17% Similarity=0.223 Sum_probs=89.1
Q ss_pred CcceEEEEEeCC--CCC--eEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEE
Q 027123 42 TRIEVLMVSSPN--RSD--LVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYM 117 (228)
Q Consensus 42 ~~~~vLLv~~~~--~~~--W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (228)
++..++|++.-+ .|. .++|+|-|+.||+++.||+|||+||||+++.+...-...|-.+ . ...+...+
T Consensus 86 G~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DP--G-------ltn~~~~i 156 (225)
T KOG3041|consen 86 GKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDP--G-------LTNCNLCI 156 (225)
T ss_pred CcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCC--C-------CCCCceEE
Confidence 677888887643 343 7999999999999999999999999999976553222222111 1 11233333
Q ss_pred EEEEeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHHHHHhhccccccceeeecCCCCCCCCcccccccccc
Q 027123 118 FSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFMKVMSEEQKVEITEEIVEPLPKPVPDVIAECQIVSS 197 (228)
Q Consensus 118 f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~v~~~~lp~~~~~~e~~~~~~ 197 (228)
-.+.+.... |+ .++..+..++.++|+..++|..+++.++..|.+
T Consensus 157 v~v~idg~~---pE---------------------------------nqrp~q~ledgEfIev~~i~~~~L~~~~~~l~~ 200 (225)
T KOG3041|consen 157 VVVDIDGDV---PE---------------------------------NQRPVQQLEDGEFIEVFLIPLSELWRELADLDS 200 (225)
T ss_pred EEEEecCCC---cc---------------------------------ccCccccCCCCceEEEEEeeHHHHHHHHHhhhh
Confidence 333333221 11 122233344688999999999999999999999
Q ss_pred CeeeecCCcccc--ccccceee
Q 027123 198 NYCVTTTSSQHH--GISAIIPF 217 (228)
Q Consensus 198 ~~~~~~~~~~~~--~~~~~~~~ 217 (228)
..+..+++...+ |+.++.++
T Consensus 201 ~~~~id~r~~a~a~Gl~~a~q~ 222 (225)
T KOG3041|consen 201 VGMSIDARLMAYALGLVSANQY 222 (225)
T ss_pred cceEeehhhHHHHHHHhhcccc
Confidence 999999998887 77776544
No 82
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.32 E-value=5.2e-11 Score=101.01 Aligned_cols=135 Identities=14% Similarity=0.094 Sum_probs=81.0
Q ss_pred CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-----CCeEec-ccccCCC----C----------C---HHHH
Q 027123 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-----SDLVFP-KGGWEND----E----------T---VMEA 73 (228)
Q Consensus 17 ~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ie~g----E----------t---~~eA 73 (228)
..+.++.+++++..+ ++||.||... +.|... +||+..| | + ..+|
T Consensus 54 l~Hra~~v~i~n~~g-------------~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eA 120 (247)
T PLN02552 54 LLHRAFSVFLFNSKY-------------ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNA 120 (247)
T ss_pred ceEEEEEEEEEcCCC-------------eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHH
Confidence 566788888887543 8888888654 368444 3444443 2 1 6899
Q ss_pred HHHHHHHHhceeeeecc----ccceEEEEeeCCcc--cCCCCC-CcEEEEEEEEE-eCccccCCCCCcceeeEEEehhhH
Q 027123 74 ACREALEEAGVRGKLNE----KPLGIWEFRSKSKQ--DLHSLE-GGCRGYMFSLE-VTEELEIWPEQENRYRKWLNIQDA 145 (228)
Q Consensus 74 A~REl~EETGl~~~~~~----~~l~~~~~~~~~~~--~~~~~~-~~~~~~~f~~~-~~~~~~~~~~~e~~~~~W~~~~el 145 (228)
|+||++||||+.+.... .+++.+.|...... .++... .....++|... ...........|+.+++|++++++
T Consensus 121 A~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el 200 (247)
T PLN02552 121 AQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREEL 200 (247)
T ss_pred HHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHH
Confidence 99999999999854321 23454545443220 000000 01112222222 222222334579999999999999
Q ss_pred hhhc-------CchHHHHHHHHHHHH
Q 027123 146 FQLC-------RYEWMREALEKFMKV 164 (228)
Q Consensus 146 ~~~~-------~~~~~~~~l~~~l~~ 164 (228)
.+++ ..|+++.++..++..
T Consensus 201 ~~~~~~~~~~~~tpw~~~~~~~~l~~ 226 (247)
T PLN02552 201 KEMMRKESGLKLSPWFRLIVDNFLMK 226 (247)
T ss_pred HHHHhhcCCcccCHHHHHHHHHHHHH
Confidence 9985 467888888777764
No 83
>PLN03143 nudix hydrolase; Provisional
Probab=99.22 E-value=3.4e-10 Score=98.05 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=60.8
Q ss_pred cceEEEEEeCC----CCCeEecccccCC-CCCHHHHHHHHHHHHhceeeeecc-ccceEE-------E-EeeCCcccCCC
Q 027123 43 RIEVLMVSSPN----RSDLVFPKGGWEN-DETVMEAACREALEEAGVRGKLNE-KPLGIW-------E-FRSKSKQDLHS 108 (228)
Q Consensus 43 ~~~vLLv~~~~----~~~W~lPgG~ie~-gEt~~eAA~REl~EETGl~~~~~~-~~l~~~-------~-~~~~~~~~~~~ 108 (228)
+.+|||+++.+ .-.|+||+|.+|+ +|++.+||+||++||||+.+.... ..+..+ . |+....
T Consensus 142 e~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~----- 216 (291)
T PLN03143 142 ETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGG----- 216 (291)
T ss_pred CEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCc-----
Confidence 44588886643 2249999999998 489999999999999999753211 112110 1 111111
Q ss_pred CCCcEEEEEEEEEeCcc----------ccCC-CCCcceeeEEEehhhHhhhcC
Q 027123 109 LEGGCRGYMFSLEVTEE----------LEIW-PEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 109 ~~~~~~~~~f~~~~~~~----------~~~~-~~~e~~~~~W~~~~el~~~~~ 150 (228)
....+++|.+..... .... .+.|..++.|++++++..+..
T Consensus 217 --~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~a 267 (291)
T PLN03143 217 --CDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTA 267 (291)
T ss_pred --cCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHH
Confidence 112344555432211 0111 234667899999999999875
No 84
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.21 E-value=4e-12 Score=108.91 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=60.9
Q ss_pred eEEEEEeCC--CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEEe
Q 027123 45 EVLMVSSPN--RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEV 122 (228)
Q Consensus 45 ~vLLv~~~~--~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 122 (228)
+.||.+.+. .|.|.+++|++|+|||++|||+||++||||+++.... |.....+... +-...+.++++..
T Consensus 201 ~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~-------~~asQPWP~~--p~SLMIgc~ala~ 271 (345)
T KOG3084|consen 201 HALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVIS-------YVASQPWPLM--PQSLMIGCLALAK 271 (345)
T ss_pred EeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEe-------eeecCCCCCC--chHHHHHHHHHHh
Confidence 455554333 4679999999999999999999999999999987652 2212121100 0001122333322
Q ss_pred C-ccccCCCCCcceeeEEEehhhHhhhcC
Q 027123 123 T-EELEIWPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 123 ~-~~~~~~~~~e~~~~~W~~~~el~~~~~ 150 (228)
. ......++.|..+++||+.+++.+.+.
T Consensus 272 ~~~~I~vd~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 272 LNGKISVDKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred hCCccccCcchhhhhcccccHHHHHHHHH
Confidence 2 222233455899999999999776544
No 85
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.20 E-value=7.3e-11 Score=88.60 Aligned_cols=126 Identities=24% Similarity=0.253 Sum_probs=85.0
Q ss_pred cEEEEEEEEEeccCCCcccccccCCcceEEEEEe-------CCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeecc
Q 027123 18 FRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSS-------PNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNE 90 (228)
Q Consensus 18 ~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~-------~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~ 90 (228)
.++++|+++|+... +...|||++. ++.+.|++|+|-...||++..||+||..||+||.++-..
T Consensus 2 pK~SAGvLlYR~~a----------G~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~ 71 (161)
T COG4119 2 PKLSAGVLLYRARA----------GVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPR 71 (161)
T ss_pred CcccceeEEEEecC----------CCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCch
Confidence 35789999999987 7789999875 345779999999999999999999999999999875322
Q ss_pred ccceEEEEeeCCcccCCCCCCcEEEEEEEEE----------------eCccccCCC-CCcceeeEEEehhhHhhhcCchH
Q 027123 91 KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLE----------------VTEELEIWP-EQENRYRKWLNIQDAFQLCRYEW 153 (228)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------------~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~~~ 153 (228)
..+|.+.. .....+..|..+ -+.....-. =.|...+-||++.++...+.. .
T Consensus 72 ~~lG~~kQ-----------~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~-g 139 (161)
T COG4119 72 IDLGSLKQ-----------SGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILK-G 139 (161)
T ss_pred hhhhhhcc-----------CCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhh-c
Confidence 22332210 111333444433 222111111 136788899999999887663 4
Q ss_pred HHHHHHHHHHHH
Q 027123 154 MREALEKFMKVM 165 (228)
Q Consensus 154 ~~~~l~~~l~~l 165 (228)
.+.+|..+...+
T Consensus 140 QRpfldrL~a~~ 151 (161)
T COG4119 140 QRPFLDRLMAHA 151 (161)
T ss_pred cchHHHHHHHHh
Confidence 566666665553
No 86
>PLN02791 Nudix hydrolase homolog
Probab=99.17 E-value=4.3e-10 Score=108.26 Aligned_cols=132 Identities=14% Similarity=0.103 Sum_probs=80.7
Q ss_pred cccCcccc---cCCCC-cEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC-----CCCeEe-cccccCCCCCHHHHH
Q 027123 5 ARTGRLRQ---RYDNN-FRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-----RSDLVF-PKGGWENDETVMEAA 74 (228)
Q Consensus 5 ~~~gr~~~---~~~~~-~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-----~~~W~l-PgG~ie~gEt~~eAA 74 (228)
..||.... ++..+ .+.++.|.+|+.. ..+|||.+|.. .|.|++ ||||++.||+..+||
T Consensus 14 ~~~G~~~~R~evH~~Gl~HrAvhVwIfn~~------------~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA 81 (770)
T PLN02791 14 EKTGVSKPRGEVHRDGDYHRAVHVWIYSES------------TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSA 81 (770)
T ss_pred CCCCccccHHhhccCCCceEEEEEEEEECC------------CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHH
Confidence 45676433 34343 5567777788742 23788877754 366988 799999999999999
Q ss_pred HHHHHHHhceeeeecc-ccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCcc----ccCCCCCcceeeEEEehhhHhhhc
Q 027123 75 CREALEEAGVRGKLNE-KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEE----LEIWPEQENRYRKWLNIQDAFQLC 149 (228)
Q Consensus 75 ~REl~EETGl~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~e~~~~~W~~~~el~~~~ 149 (228)
+||++||+|+.+.... ..++.+.+......... ......++|.+..... .-.....|+.+++|++++|+.+++
T Consensus 82 ~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~--~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l 159 (770)
T PLN02791 82 QRELEEELGIILPKDAFELLFVFLQECVINDGKF--INNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSAL 159 (770)
T ss_pred HHHHHHHhCCCCChhheeeeeeEEEEeeccCCCc--ceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHH
Confidence 9999999999853221 23444433221111000 0112234454432111 112245799999999999998765
Q ss_pred C
Q 027123 150 R 150 (228)
Q Consensus 150 ~ 150 (228)
.
T Consensus 160 ~ 160 (770)
T PLN02791 160 A 160 (770)
T ss_pred h
Confidence 4
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.87 E-value=9e-08 Score=71.21 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=66.2
Q ss_pred eEEEEEeCCC----CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEE
Q 027123 45 EVLMVSSPNR----SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSL 120 (228)
Q Consensus 45 ~vLLv~~~~~----~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 120 (228)
++||.||+.. |.|+||+|.++.+|+..++..|++.++.++. . ..++.+....++. ...+.+|.+
T Consensus 15 ~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~H~fth~--------~~~~~~~~~ 82 (118)
T cd03431 15 RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLS---L-EPLGTVKHTFTHF--------RLTLHVYLA 82 (118)
T ss_pred eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCcc---c-ccceeEEEecCCe--------EEEEEEEEE
Confidence 7999999764 5699999999999999999999999887641 1 1233333322221 234566766
Q ss_pred EeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHHH
Q 027123 121 EVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALE 159 (228)
Q Consensus 121 ~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 159 (228)
...... .+..+.+|++++++..+.....++.+++
T Consensus 83 ~~~~~~-----~~~~~~~W~~~eel~~~~~p~~~~kil~ 116 (118)
T cd03431 83 RLEGDL-----LAPDEGRWVPLEELDEYALPTVMRKILE 116 (118)
T ss_pred EEeCCC-----cCccccEEccHHHHhhCCCCHHHHHHHH
Confidence 554321 2345789999999998876665555553
No 88
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=2.5e-09 Score=91.79 Aligned_cols=114 Identities=24% Similarity=0.294 Sum_probs=76.9
Q ss_pred CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCC-----CCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccc
Q 027123 17 NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-----RSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEK 91 (228)
Q Consensus 17 ~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~ 91 (228)
..+..+|+.+++..+ +||+++..+ ++.|.+|+|.|+++|++.++|+||++||||++..+.+.
T Consensus 113 sh~vgvg~~V~n~~~-------------eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eV 179 (295)
T KOG0648|consen 113 SHRVGVGAFVLNKKK-------------EVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEV 179 (295)
T ss_pred hhheeeeeeEecCCc-------------eeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhH
Confidence 466678888888654 899998643 47799999999999999999999999999997665431
Q ss_pred cceEEEEeeCCcccCCCCCCcEEEEEEEEEeCc--cccCCCCCcceeeEEEehhhHhhhcC
Q 027123 92 PLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTE--ELEIWPEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~ 150 (228)
+ . +...+.... ...+.-.||.+.... .....++.|+..++|+++++......
T Consensus 180 -l-a--~r~~H~~~~---~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~ 233 (295)
T KOG0648|consen 180 -L-A--FRRAHNATF---GLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPL 233 (295)
T ss_pred -H-H--HHhhhcchh---hcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccc
Confidence 1 1 111111000 001233455555433 33344667888899999998876643
No 89
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.67 E-value=1e-07 Score=78.97 Aligned_cols=114 Identities=20% Similarity=0.252 Sum_probs=69.7
Q ss_pred EEEEEEEEEeccCCCcccccccCCcceEEEEEeCC-----CCCeEecccccCCCC-CHHHHHHHHHHHHhceeeeecccc
Q 027123 19 RLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPN-----RSDLVFPKGGWENDE-TVMEAACREALEEAGVRGKLNEKP 92 (228)
Q Consensus 19 r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ie~gE-t~~eAA~REl~EETGl~~~~~~~~ 92 (228)
|.++.+|++-..++ ++++|||.+|.. .|.-+||||..+..+ +-.++|.||.+||.|+...... .
T Consensus 42 ~~~aVlI~L~~~~~---------~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~-~ 111 (246)
T KOG3069|consen 42 RKAAVLIPLVQVGS---------GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVD-V 111 (246)
T ss_pred CCccEEEEEEEcCC---------CceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhh-h
Confidence 45666676665532 578999988753 477899999999855 6778999999999999854331 2
Q ss_pred ceEEE-EeeCCcccCCCCCCcEEEEEEEEEeCc-cccCCCCCcceeeEEEehhhHhhh
Q 027123 93 LGIWE-FRSKSKQDLHSLEGGCRGYMFSLEVTE-ELEIWPEQENRYRKWLNIQDAFQL 148 (228)
Q Consensus 93 l~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~ 148 (228)
+|... +..+..... .-+..|.....- ........|..++.|+|++++..-
T Consensus 112 ~g~l~~~~~r~~~~v------~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 112 LGALPPFVLRSGWSV------FPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred hhhccceeeccCccc------ceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence 33331 111111110 011112221111 112235678999999999998653
No 90
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=98.55 E-value=3.5e-07 Score=75.08 Aligned_cols=118 Identities=14% Similarity=0.254 Sum_probs=71.4
Q ss_pred CcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHh--ceeeee---c----c-ccceEE-EEeeCCcccCCCCC
Q 027123 42 TRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEA--GVRGKL---N----E-KPLGIW-EFRSKSKQDLHSLE 110 (228)
Q Consensus 42 ~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EET--Gl~~~~---~----~-~~l~~~-~~~~~~~~~~~~~~ 110 (228)
+-++++.||+++.+.|.+|||.+++||.+-.+.+||+.||. ++.-.. + . ..+.+| .|....+ ...+..
T Consensus 137 ~ile~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ns~~k~~e~~l~~~~~~~g~evYkGYvDDpR-NTDNaW 215 (275)
T KOG4195|consen 137 KILEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEAMNSLQKSNEEMLHKLLSQCGMEVYKGYVDDPR-NTDNAW 215 (275)
T ss_pred eeeEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCeEEeeeecCCCC-cccccc
Confidence 44899999999999999999999999999999999999995 222110 0 0 112223 2322211 111111
Q ss_pred CcEEEEEEEEEeCc-----cccCCCCCcceeeEEEehhhHhhhcCchHHHHHHHHHHHH
Q 027123 111 GGCRGYMFSLEVTE-----ELEIWPEQENRYRKWLNIQDAFQLCRYEWMREALEKFMKV 164 (228)
Q Consensus 111 ~~~~~~~f~~~~~~-----~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~l~~ 164 (228)
..+..+...... +......+....++|++++.=..+ |.+|..+|+.+..+
T Consensus 216 --mET~avn~hde~g~~~~nl~L~AgDda~~vrW~dVn~~l~L--yAshs~fi~lvae~ 270 (275)
T KOG4195|consen 216 --METVAVNFHDEDGNNMDNLNLEAGDDAKKVRWVDVNSNLPL--YASHSQFIQLVAEK 270 (275)
T ss_pred --eeEEEEeeeccccchhccccccccCcccceeEEEecCCccc--hhhHHHHHHHHHHH
Confidence 111112222221 111223456788999999985554 55888888776554
No 91
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.40 E-value=1.1e-06 Score=69.87 Aligned_cols=117 Identities=11% Similarity=0.093 Sum_probs=75.0
Q ss_pred cEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-----CCeE-ecccccCCCCCHHHHHHHHHHHHhceeeeecc-
Q 027123 18 FRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-----SDLV-FPKGGWENDETVMEAACREALEEAGVRGKLNE- 90 (228)
Q Consensus 18 ~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-----~~W~-lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~- 90 (228)
...+.+|.+|+..+ ++||.+|..+ +.|. -.-||--+||+..+||+|-+.+|.||+.....
T Consensus 32 LHrAFS~~lFne~g-------------~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~ 98 (185)
T COG1443 32 LHRAFSSFLFNERG-------------QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDK 98 (185)
T ss_pred HHhhhheeEECCCC-------------ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCc
Confidence 35688999998765 6666555432 2241 12377779999999999999999999866321
Q ss_pred -ccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhhhcCc
Q 027123 91 -KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRY 151 (228)
Q Consensus 91 -~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 151 (228)
..+--|.|.-...... ...-...+|++........ .++|..+++|++++++.++...
T Consensus 99 ~~il~rf~YrA~~~~~~---~E~Eic~V~~~~~~~~~~~-npdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 99 LEILPRFRYRAADPDGI---VENEICPVLAARLDSALDP-NPDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred cccccceEEeccCCCCc---ceeeeeeEEEEeecCCCCC-ChHHhhheeccCHHHHHHhhcC
Confidence 2233445554433221 1122334455544443333 4589999999999999987553
No 92
>PLN02839 nudix hydrolase
Probab=98.34 E-value=3e-06 Score=75.21 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=64.3
Q ss_pred EecccccCCCCCHHHHHHHHHHHHhceeeeec--cccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccC-CCCCcc
Q 027123 58 VFPKGGWENDETVMEAACREALEEAGVRGKLN--EKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEI-WPEQEN 134 (228)
Q Consensus 58 ~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~ 134 (228)
.+.+|++..||++.++++||+.||+|+..... -.+.|++.|....... ......++|-+..+....+ ..+.|.
T Consensus 238 n~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g----~~~evly~YDLeLP~df~P~~qDGEV 313 (372)
T PLN02839 238 HLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYC----FKRDVLFCYDLELPQDFVPKNQDGEV 313 (372)
T ss_pred hccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCc----cccCEEEEeeeecCCccccCCCccce
Confidence 45589999999999999999999999974321 1356777776433322 1123456788887766533 346789
Q ss_pred eeeEEEehhhHhhhcC
Q 027123 135 RYRKWLNIQDAFQLCR 150 (228)
Q Consensus 135 ~~~~W~~~~el~~~~~ 150 (228)
+++.+++++|+.+.+.
T Consensus 314 e~F~Lm~v~EV~~~l~ 329 (372)
T PLN02839 314 ESFKLIPVAQVANVIR 329 (372)
T ss_pred eEEEEecHHHHHHHHH
Confidence 9999999999987654
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.15 E-value=3.3e-05 Score=57.64 Aligned_cols=100 Identities=21% Similarity=0.216 Sum_probs=56.6
Q ss_pred eEEEEEeCCC----CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEE
Q 027123 45 EVLMVSSPNR----SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSL 120 (228)
Q Consensus 45 ~vLLv~~~~~----~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 120 (228)
++||.||+++ |.|+||.--++. ++..+.+.+.+.+..|+.+.... .++.+....++. ...+.+|.+
T Consensus 10 ~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~~~v~H~fSH~--------~~~~~~~~~ 79 (114)
T PF14815_consen 10 RVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVE-PLGTVKHVFSHR--------RWTIHVYEV 79 (114)
T ss_dssp EEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S--SEEEEEE-SSE--------EEEEEEEEE
T ss_pred EEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhhe-ecCcEEEEccce--------EEEEEEEEE
Confidence 8999999875 559999977774 33356666667788898876663 577766554443 245667777
Q ss_pred EeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHH
Q 027123 121 EVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREAL 158 (228)
Q Consensus 121 ~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 158 (228)
.+...... .....+|++.+++..+....-++.++
T Consensus 80 ~~~~~~~~----~~~~~~W~~~~~l~~~~~p~~~~kil 113 (114)
T PF14815_consen 80 EVSADPPA----EPEEGQWVSLEELDQYPLPTPMRKIL 113 (114)
T ss_dssp EEE-SS--------TTEEEEEGGGGGGS---HHHHHHH
T ss_pred EecCCCCC----CCCCcEEEEHHHHhhCCCCHHHHHHh
Confidence 66643221 45688999999999876665555443
No 94
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.73 E-value=0.00012 Score=59.41 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=66.3
Q ss_pred ccccccCcccccCCC-CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHH
Q 027123 2 SVEARTGRLRQRYDN-NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALE 80 (228)
Q Consensus 2 ~~~~~~gr~~~~~~~-~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~E 80 (228)
++.+|.-|.+..|.. ++|.+|-+|++.... +--.|||+|... ..|.||||.+.+||+..++..|.|.+
T Consensus 25 s~~~rl~rl~~~y~~~GmRrsVe~Vllvh~h----------~~PHvLLLq~~~-~~fkLPGg~l~~gE~e~~gLkrkL~~ 93 (188)
T PF13869_consen 25 SVAARLQRLKENYEKEGMRRSVEGVLLVHEH----------GHPHVLLLQIGN-TFFKLPGGRLRPGEDEIEGLKRKLTE 93 (188)
T ss_dssp SHHHHHHHHHHHHHHHSSEEEEEEEEEEEET----------TEEEEEEEEETT-TEEE-SEEE--TT--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCceEEEEEEEEecC----------CCcEEEEEeccC-ccccCCccEeCCCCChhHHHHHHHHH
Confidence 345566666667764 888888777666544 355899999655 47999999999999999999999999
Q ss_pred Hhceee------eeccccceEEEEeeCCc----ccCCC-CCCcEEEEEEEEEeCcc
Q 027123 81 EAGVRG------KLNEKPLGIWEFRSKSK----QDLHS-LEGGCRGYMFSLEVTEE 125 (228)
Q Consensus 81 ETGl~~------~~~~~~l~~~~~~~~~~----~~~~~-~~~~~~~~~f~~~~~~~ 125 (228)
-.|... .+. ..+|.|..+.-.. +.+.+ ....-+..+|.+.....
T Consensus 94 ~l~~~~~~~~~w~vg-e~l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~ 148 (188)
T PF13869_consen 94 KLSPEDGVDPDWEVG-ECLGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEK 148 (188)
T ss_dssp HHB-SSSS----EEE-EEEEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SS
T ss_pred HcCCCcCCCCCcEec-CEEEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCC
Confidence 988862 122 3456664322111 11111 11223567788876653
No 95
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.52 E-value=3e-05 Score=67.37 Aligned_cols=103 Identities=24% Similarity=0.268 Sum_probs=66.1
Q ss_pred EEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEee
Q 027123 21 VSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRS 100 (228)
Q Consensus 21 ~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~ 100 (228)
+-|++++...- -++||++.-....|.+|.|++..+|+-.+||.||+.||||.+..-. +..+.+..
T Consensus 84 v~ga~ild~~~------------sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skq---l~~~e~Ie 148 (348)
T KOG2937|consen 84 VRGAIILDEKR------------SRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQ---LQDNEGIE 148 (348)
T ss_pred CchHhhhhhhh------------hhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHHH---hccccCcc
Confidence 44667766532 3788887765555999999999999999999999999999986522 22222222
Q ss_pred CCcccCCCCCCcEEEEEEEEE-eCc--cccCCCCCcceeeEEEehhhH
Q 027123 101 KSKQDLHSLEGGCRGYMFSLE-VTE--ELEIWPEQENRYRKWLNIQDA 145 (228)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~-~~~--~~~~~~~~e~~~~~W~~~~el 145 (228)
....+ ..+..|... +.. .....--.|+..+.|+.++++
T Consensus 149 ~nI~d-------q~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l 189 (348)
T KOG2937|consen 149 TNIRD-------QLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHL 189 (348)
T ss_pred cchhh-------ceeeeeeeccceeeeecchhhhccccceeeeehhhh
Confidence 22221 122323331 111 111112468889999999999
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.07 E-value=0.017 Score=45.64 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=73.1
Q ss_pred CCCCcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCC-------CCeEec-ccccCCCC--CHHHH-----HHHHH
Q 027123 14 YDNNFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNR-------SDLVFP-KGGWENDE--TVMEA-----ACREA 78 (228)
Q Consensus 14 ~~~~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~-------~~W~lP-gG~ie~gE--t~~eA-----A~REl 78 (228)
+++.+++.+..+++...+ +||+-.|-.. +.+++- |||+..++ ++.++ +.|||
T Consensus 55 eDp~~KQ~IpYvvi~~ed-------------evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REl 121 (203)
T COG4112 55 EDPTTKQVIPYVVIMDED-------------EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLEREL 121 (203)
T ss_pred cCccccccccEEEEecCC-------------EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHH
Confidence 334677777777776543 8998887532 335553 89999876 33332 67999
Q ss_pred HHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCcceeeEEEehhhHhh
Q 027123 79 LEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRYRKWLNIQDAFQ 147 (228)
Q Consensus 79 ~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 147 (228)
.||.++.-... +.+....+........ ...+...+|+.....+.....+.+.-+.+|+...++..
T Consensus 122 eEEv~vseqd~-q~~e~lGlINdd~neV---gkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 122 EEEVDVSEQDL-QELEFLGLINDDTNEV---GKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred HHHhCcCHHHh-hhheeeeeecCCCccc---ceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence 99999984333 2233333433322211 12234456777766554444677788999999999987
No 97
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=96.65 E-value=0.002 Score=51.18 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=52.7
Q ss_pred ccccccCcccccCCC-CcEEEEEEEEEeccCCCcccccccCCcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHH
Q 027123 2 SVEARTGRLRQRYDN-NFRLVSGCIPYRLTKDAEDENEDTQTRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACREALE 80 (228)
Q Consensus 2 ~~~~~~gr~~~~~~~-~~r~~vg~ii~~~~~~~~~~~~~~~~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~E 80 (228)
|+.+|--|-+..|.. ++|.+|-+|++.... +--.|||+|-.. ..+.+|||.+++||+-.+...|-+-|
T Consensus 51 svadrf~rmk~ey~k~gmRrsvegvlivheH----------~lPHvLLLQig~-tf~KLPGG~L~pGE~e~~Gl~r~l~~ 119 (221)
T KOG1689|consen 51 SVADRFARMKIEYMKEGMRRSVEGVLIVHEH----------NLPHVLLLQIGN-TFFKLPGGRLRPGEDEADGLKRLLTE 119 (221)
T ss_pred hHHHHHHHHHHHHHhhhhhheeeeeEEEeec----------CCCeEEEEeeCC-EEEecCCCccCCCcchhHHHHHHHHH
Confidence 344555555556663 788877555444432 234788888765 46999999999999999999999999
Q ss_pred Hhc
Q 027123 81 EAG 83 (228)
Q Consensus 81 ETG 83 (228)
-.|
T Consensus 120 ~Lg 122 (221)
T KOG1689|consen 120 SLG 122 (221)
T ss_pred Hhc
Confidence 999
No 98
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.02 Score=48.34 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=65.1
Q ss_pred ceEEEEEeCC--CCCeEeccccc-CCCCCHHHHHHHHHHHHhceeee---eccccceEEEEeeCCcccCCCCCCcEEEEE
Q 027123 44 IEVLMVSSPN--RSDLVFPKGGW-ENDETVMEAACREALEEAGVRGK---LNEKPLGIWEFRSKSKQDLHSLEGGCRGYM 117 (228)
Q Consensus 44 ~~vLLv~~~~--~~~W~lPgG~i-e~gEt~~eAA~REl~EETGl~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (228)
.-|||++++- .+.|.||.+-. +.++++..+|.|+|+.-.|=... +...|+|-+.+.+..... ...+....+++
T Consensus 139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~-~e~~~~sk~ff 217 (263)
T KOG4548|consen 139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMT-TEEPVSSKVFF 217 (263)
T ss_pred eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCccccc-ccccccceeEE
Confidence 4578888662 35699999999 99999999999999998887532 222345532222211110 00112234555
Q ss_pred EEEEeCccccCCCCCcceeeEEEehhhHhhhcCch
Q 027123 118 FSLEVTEELEIWPEQENRYRKWLNIQDAFQLCRYE 152 (228)
Q Consensus 118 f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 152 (228)
|.+..-.+... ....-.++.|++-+++-+.+...
T Consensus 218 ~k~~lv~~~~~-kn~n~edfvWvTkdel~e~l~~~ 251 (263)
T KOG4548|consen 218 FKASLVANSNQ-KNQNKEDFVWVTKDELGEKLPKF 251 (263)
T ss_pred eeeeeccccch-hcccccceEEechHHHhhhcchH
Confidence 55544333221 12333459999999999987743
No 99
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.49 E-value=0.018 Score=47.12 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhceeeeecc----ccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCC-CCcceeeEEEeh
Q 027123 68 ETVMEAACREALEEAGVRGKLNE----KPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWP-EQENRYRKWLNI 142 (228)
Q Consensus 68 Et~~eAA~REl~EETGl~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~ 142 (228)
.....||+|-|.-|.||...... ++++.+.|........ + -+..-|.+-+..+....| ..|..+++|++.
T Consensus 103 lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~w----G-EhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~ 177 (225)
T KOG0142|consen 103 LGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIW----G-EHEIDYILFLVKDVTLNPNPNEVSEIRYVSR 177 (225)
T ss_pred HHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCc----c-cceeeEEEEEeccCCCCCChhhhhHhheecH
Confidence 36788999999999999865443 3445555544433221 1 122223333333433333 469999999999
Q ss_pred hhHhhhcCc------hHHHHHHHHHHHH
Q 027123 143 QDAFQLCRY------EWMREALEKFMKV 164 (228)
Q Consensus 143 ~el~~~~~~------~~~~~~l~~~l~~ 164 (228)
+|+.+++.. |+.+.+.+.++-.
T Consensus 178 eelkel~~~~~~~~TPWfkli~~~~l~~ 205 (225)
T KOG0142|consen 178 EELKELVAKASAGFTPWFKLISENFLFK 205 (225)
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHH
Confidence 999998643 5666666655543
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=94.33 E-value=0.14 Score=44.44 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=54.7
Q ss_pred eEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEEEeCccccCCCCCccee
Q 027123 57 LVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELEIWPEQENRY 136 (228)
Q Consensus 57 W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~ 136 (228)
.+|.+|.|++.-|+.+-|..|+.||.|+++.... .+.+++|........ ...+.|.+++.+..+......+..
T Consensus 81 ielc~g~idke~s~~eia~eev~eecgy~v~~d~-l~hv~~~~~g~~~s~------sa~~l~y~ei~es~kis~gggv~~ 153 (405)
T KOG4432|consen 81 IELCAGLIDKELSPREIASEEVAEECGYRVDPDD-LIHVITFVVGAHQSG------SAQHLYYAEIDESMKISEGGGVIT 153 (405)
T ss_pred eeeeccccccccCHHHHhHHHHHHHhCCcCChhH-ceEEEEEEeccccCc------cchheeeeecchhhccccCCceee
Confidence 3678999999999999999999999999988764 467777776533221 234566677665554434444444
Q ss_pred eEEEehhh
Q 027123 137 RKWLNIQD 144 (228)
Q Consensus 137 ~~W~~~~e 144 (228)
-+..+++-
T Consensus 154 ~~~~~~~~ 161 (405)
T KOG4432|consen 154 KVYYPVNV 161 (405)
T ss_pred EEEEeehh
Confidence 44444433
No 101
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.2 Score=42.36 Aligned_cols=106 Identities=18% Similarity=0.157 Sum_probs=69.8
Q ss_pred CcceEEEEEeCCCC-Ce-----EecccccCCCCCHHHHHHHHHHHHhceeeeecc--ccceEEEEeeCCcccCCCCCCcE
Q 027123 42 TRIEVLMVSSPNRS-DL-----VFPKGGWENDETVMEAACREALEEAGVRGKLNE--KPLGIWEFRSKSKQDLHSLEGGC 113 (228)
Q Consensus 42 ~~~~vLLv~~~~~~-~W-----~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~ 113 (228)
+++++.+-+|.... -| -..+|++--|-.+.++|+.|..||+.+...... ...|+++|.....+... ...
T Consensus 146 ~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~---~pe 222 (306)
T KOG4313|consen 146 GPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGL---FPE 222 (306)
T ss_pred CceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhcc---Ccc
Confidence 55777776665532 35 344899999999999999999999999853211 24577766532211111 113
Q ss_pred EEEEEEEEeCccccCC-CCCcceeeEEEehhhHhhhcC
Q 027123 114 RGYMFSLEVTEELEIW-PEQENRYRKWLNIQDAFQLCR 150 (228)
Q Consensus 114 ~~~~f~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~ 150 (228)
.-++|-+.++....+. .+.|.+.+.-++.+|..+.++
T Consensus 223 ~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l~ 260 (306)
T KOG4313|consen 223 TQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVERLF 260 (306)
T ss_pred ceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHHHH
Confidence 4578888877654433 456888888888888766544
No 102
>PRK10880 adenine DNA glycosylase; Provisional
Probab=92.55 E-value=1.8 Score=38.87 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=47.0
Q ss_pred eEEEEEeCCC----CCeEecccccCCCCCHHHHHHHHHHHHhceeeeeccccceEEEEeeCCcccCCCCCCcEEEEEEEE
Q 027123 45 EVLMVSSPNR----SDLVFPKGGWENDETVMEAACREALEEAGVRGKLNEKPLGIWEFRSKSKQDLHSLEGGCRGYMFSL 120 (228)
Q Consensus 45 ~vLLv~~~~~----~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~ 120 (228)
++||.+|+.. |.|+||.. +.. + ..++..|+.|+...... .++.+....++. ...+..|.+
T Consensus 243 ~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~~~~~~-~~~~~~H~fTH~--------~~~~~~~~~ 306 (350)
T PRK10880 243 EVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIAADNLT-QLTAFRHTFSHF--------HLDIVPMWL 306 (350)
T ss_pred EEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCchhhhc-ccCceEEEEeeE--------EEEEEEEEE
Confidence 7899888764 55999963 211 1 24555677777532111 122222111111 112233433
Q ss_pred EeCccccCCCCCcceeeEEEehhhHhhhcCchHHHHHH
Q 027123 121 EVTEELEIWPEQENRYRKWLNIQDAFQLCRYEWMREAL 158 (228)
Q Consensus 121 ~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 158 (228)
........ .......|++++++.......-++.++
T Consensus 307 ~~~~~~~~---~~~~~~~w~~~~~~~~~~~p~~~~k~l 341 (350)
T PRK10880 307 PVSSFTGC---MDEGNGLWYNLAQPPSVGLAAPVERLL 341 (350)
T ss_pred Eccccccc---cCCcCCeEechHHhcccCCcHHHHHHH
Confidence 33211110 111234699999999976655444444
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=90.41 E-value=0.8 Score=39.90 Aligned_cols=87 Identities=28% Similarity=0.227 Sum_probs=57.4
Q ss_pred eEecccccCCCCCHHHHHHHHHHHHhceeeeeccc-cceEEEEeeCCcccCCCCCCcEEEEEEEEEeCcccc------CC
Q 027123 57 LVFPKGGWENDETVMEAACREALEEAGVRGKLNEK-PLGIWEFRSKSKQDLHSLEGGCRGYMFSLEVTEELE------IW 129 (228)
Q Consensus 57 W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~------~~ 129 (228)
.+|..|.|+..-+..+-|.||..||.|+++-.... ...+ |.+.... ....-.+|+++++.... ..
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~--y~sGVG~------SG~~QTmfy~eVTdA~rsgpGgg~~ 357 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAK--YISGVGQ------SGDTQTMFYVEVTDARRSGPGGGEK 357 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhhe--eecccCC------cCCeeEEEEEEeehhhccCCCCCcc
Confidence 46778999999999999999999999999654321 1122 2222110 11344677787765432 12
Q ss_pred CCCcceeeEEEehhhHhhhcCc
Q 027123 130 PEQENRYRKWLNIQDAFQLCRY 151 (228)
Q Consensus 130 ~~~e~~~~~W~~~~el~~~~~~ 151 (228)
.+.|.-++.=+++++++.+...
T Consensus 358 ee~E~IEvv~lsle~a~~~~~q 379 (405)
T KOG4432|consen 358 EEDEDIEVVRLSLEDAPSLYRQ 379 (405)
T ss_pred cccceeeEEEechhhhhHHHhc
Confidence 3457778888999999887653
No 104
>PF14443 DBC1: DBC1
Probab=84.04 E-value=6 Score=30.18 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=30.7
Q ss_pred CcceEEEEEeCC-----CCCeEec--ccccCC-CCCHHHHHHHHHHHHhceeee
Q 027123 42 TRIEVLMVSSPN-----RSDLVFP--KGGWEN-DETVMEAACREALEEAGVRGK 87 (228)
Q Consensus 42 ~~~~vLLv~~~~-----~~~W~lP--gG~ie~-gEt~~eAA~REl~EETGl~~~ 87 (228)
+.+++|+.++-+ .|.|+.- ||-... ..++..+|+|=+++-||++..
T Consensus 6 ~~lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 6 RLLKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred hheeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 356777775543 2445332 444444 246889999999999999964
No 105
>PRK13910 DNA glycosylase MutY; Provisional
Probab=69.54 E-value=77 Score=27.69 Aligned_cols=25 Identities=12% Similarity=0.010 Sum_probs=18.3
Q ss_pred eeEEEehhhHhhhcCchHHHHHHHH
Q 027123 136 YRKWLNIQDAFQLCRYEWMREALEK 160 (228)
Q Consensus 136 ~~~W~~~~el~~~~~~~~~~~~l~~ 160 (228)
..+|++++++..+....-++.+++.
T Consensus 256 ~~~w~~~~~~~~~~~p~~~~k~~~~ 280 (289)
T PRK13910 256 PIRFYSLKDLETLPISSMTLKILNF 280 (289)
T ss_pred cceEecHHHhhhcCCcHHHHHHHHH
Confidence 4489999999998776655555543
No 106
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=66.42 E-value=16 Score=23.98 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=15.2
Q ss_pred CCeEecccccCCCCCHHHHHHHHHHH
Q 027123 55 SDLVFPKGGWENDETVMEAACREALE 80 (228)
Q Consensus 55 ~~W~lPgG~ie~gEt~~eAA~REl~E 80 (228)
.-|.+|||.+-.+=- .|+|+.+|
T Consensus 22 ~GWl~Pgg~vi~NPl---kAqR~AE~ 44 (60)
T PF07026_consen 22 NGWLMPGGKVITNPL---KAQRLAEE 44 (60)
T ss_pred ceeecCCCeeEcCHH---HHHHHHHH
Confidence 449999999987643 34454444
No 107
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=53.88 E-value=8.4 Score=32.98 Aligned_cols=41 Identities=12% Similarity=-0.080 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHHHHhhccccccceeeecCCCCCCCCcccccccc
Q 027123 151 YEWMREALEKFMKVMSEEQKVEITEEIVEPLPKPVPDVIAECQIV 195 (228)
Q Consensus 151 ~~~~~~~l~~~l~~l~~~~~~~~~~~~v~~~~lp~~~~~~e~~~~ 195 (228)
..+|+.++..++.+|+.+. ...+|-|++.|-.||...||..
T Consensus 218 ~~DHRRIlATa~aRLR~KI----KYRPVVFELmp~~FTLlqLQrt 258 (322)
T COG4111 218 RHDHRRILATALARLRAKI----KYRPVVFELMPPEFTLLQLQRT 258 (322)
T ss_pred hhhHHHHHHHHHHHHHhcc----cccceEEEecCchhhHHHHHHH
Confidence 4589999999999999888 8889999999999999998873
No 108
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=49.25 E-value=17 Score=21.93 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=11.9
Q ss_pred EecccccCCCCCHHHHHHHHHHHHh
Q 027123 58 VFPKGGWENDETVMEAACREALEEA 82 (228)
Q Consensus 58 ~lPgG~ie~gEt~~eAA~REl~EET 82 (228)
.+-||...+|--+...+.||+-||.
T Consensus 12 tClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 12 TCLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HHhcccCCCCCCCchHHHHHHHHHH
Confidence 4568888888888999999999994
No 109
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=37.86 E-value=13 Score=33.09 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=29.6
Q ss_pred CCeEecccccCCCCCHHHHHHHHHHHHhceee
Q 027123 55 SDLVFPKGGWENDETVMEAACREALEEAGVRG 86 (228)
Q Consensus 55 ~~W~lPgG~ie~gEt~~eAA~REl~EETGl~~ 86 (228)
..|.||.|.+..||-+.++++|+..||+|+.-
T Consensus 264 e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~ 295 (348)
T KOG2937|consen 264 ENWTFPKGKISRGEKPRDASIRSTFEEPGFPF 295 (348)
T ss_pred ccccCcccccccCCccccchhhhcCCCcCCcc
Confidence 34999999999999999999999999999973
No 110
>PRK07198 hypothetical protein; Validated
Probab=31.77 E-value=44 Score=30.61 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=27.9
Q ss_pred eEEEEEeCCCCCeEecccccCCCCCHHHHHHHHHHHHhcee
Q 027123 45 EVLMVSSPNRSDLVFPKGGWENDETVMEAACREALEEAGVR 85 (228)
Q Consensus 45 ~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~REl~EETGl~ 85 (228)
.+.+.|-.-...|.|||=.-.-| --+...+|-|+|+||=.
T Consensus 163 ~~~vtk~av~pvwylpgva~rfg-~~e~~lrr~lfe~t~g~ 202 (418)
T PRK07198 163 DVVVTKAAIEPVWYLPGVAERFG-VSETDLRRTLFEQTGGM 202 (418)
T ss_pred cEEEEEeeecccccccchHHHcC-CCHHHHHHHHHHHcCCC
Confidence 46666666678899998433323 23567889999999964
No 111
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=31.64 E-value=1.5e+02 Score=26.58 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=16.4
Q ss_pred eEEEEEeCCC----CCeEecccccCC
Q 027123 45 EVLMVSSPNR----SDLVFPKGGWEN 66 (228)
Q Consensus 45 ~vLLv~~~~~----~~W~lPgG~ie~ 66 (228)
+++|.+++.. |.|.||....+.
T Consensus 248 ~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 248 EVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred chhhhhCcccCceecccccccccccc
Confidence 7888888875 458999876544
No 112
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=29.30 E-value=1.4e+02 Score=25.75 Aligned_cols=18 Identities=33% Similarity=0.563 Sum_probs=14.2
Q ss_pred eEEEEEeCCC----CCeEeccc
Q 027123 45 EVLMVSSPNR----SDLVFPKG 62 (228)
Q Consensus 45 ~vLLv~~~~~----~~W~lPgG 62 (228)
++||.+++.. |.|.||+.
T Consensus 240 ~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 240 EVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred eEEEEeCCCCchhhccccCCCC
Confidence 7999988764 55899973
No 113
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=22.50 E-value=1.2e+02 Score=26.73 Aligned_cols=32 Identities=16% Similarity=-0.076 Sum_probs=29.1
Q ss_pred CeEecccccCCCCCHHHHHHHHHHHHhceeeee
Q 027123 56 DLVFPKGGWENDETVMEAACREALEEAGVRGKL 88 (228)
Q Consensus 56 ~W~lPgG~ie~gEt~~eAA~REl~EETGl~~~~ 88 (228)
.|.. .|....++++.+++.|++.++||....+
T Consensus 56 ~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~~ 87 (295)
T KOG0648|consen 56 KWYL-QGRKGIWLKLPEELARLVEEAAKYGFDY 87 (295)
T ss_pred HHHH-ccCcccceechHHHHhHHHHHHhcCcEE
Confidence 5998 9999999999999999999999997544
No 114
>PF14044 NETI: NETI protein
Probab=21.78 E-value=82 Score=20.54 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=18.9
Q ss_pred ccCCCCCHHHHHHHHHHHHhcee-eeecccc
Q 027123 63 GWENDETVMEAACREALEEAGVR-GKLNEKP 92 (228)
Q Consensus 63 ~ie~gEt~~eAA~REl~EETGl~-~~~~~~~ 92 (228)
.|+.+||+.+|..|-- +-|+. +.-.+.|
T Consensus 3 eV~enETI~~CL~RM~--~eGY~PvrR~EkP 31 (57)
T PF14044_consen 3 EVEENETISDCLARMK--KEGYMPVRRIEKP 31 (57)
T ss_pred eccCCCcHHHHHHHHH--HcCCCceeecccc
Confidence 3688999999999943 44775 4433333
No 115
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=21.46 E-value=4.1e+02 Score=23.01 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=38.1
Q ss_pred CcceEEEEEeCCCCCeEecccccCCCCCHHHHHHHH-HHHHhceeeeeccccceEEEEe
Q 027123 42 TRIEVLMVSSPNRSDLVFPKGGWENDETVMEAACRE-ALEEAGVRGKLNEKPLGIWEFR 99 (228)
Q Consensus 42 ~~~~vLLv~~~~~~~W~lPgG~ie~gEt~~eAA~RE-l~EETGl~~~~~~~~l~~~~~~ 99 (228)
++.+||-|..-. .+|.|-.++.-...++-+|. +.+.|+...-+.+| +.+|...
T Consensus 35 ~~p~VLtV~q~~----aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQ-LYTF~Dr 88 (322)
T COG4111 35 GGPRVLTVRQGA----ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQ-LYTFADR 88 (322)
T ss_pred CCceEEEecccc----cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHh-hhhhccc
Confidence 456888876554 39999999988777777776 45568888888765 5555433
Done!