BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027126
         (228 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NQ5|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
           R209h Mutant
 pdb|3NQ5|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
           R209h Mutant
          Length = 303

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 108 YDLEEQNAFVK--SSFDVGPKLHFRAAHDVKAQQGEVGVVANLGDPGYAL 155
           +D+  QN+F      F  GP+LH R  H V  Q G V    N  DP + L
Sbjct: 182 WDMTSQNSFRNQLEGFINGPQLHNRVHHWVGGQMGVVPTAPN--DPVFFL 229


>pdb|1DRO|A Chain A, Nmr Structure Of The CytoskeletonSIGNAL TRANSDUCTION
           Protein
          Length = 122

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 57  EFDSDSSIFLHKISCKLFDSLAKLKVSFQNDNKGQIFEPQLAFTSKHLSLHYDLEEQNAF 116
           E+DS +    ++   K++ +    ++SF  D KG    P+L F  +     YDL  QNA 
Sbjct: 19  EWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGE---PSYDL--QNAA 73

Query: 117 VKSSFDVGPKLH 128
           ++ + D   K H
Sbjct: 74  IEIASDYTKKKH 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,605,475
Number of Sequences: 62578
Number of extensions: 188324
Number of successful extensions: 423
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 4
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)