Query 027126
Match_columns 228
No_of_seqs 53 out of 55
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 05:20:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA01732 proline-rich protein 96.2 0.009 2E-07 47.6 4.7 20 74-93 61-80 (94)
2 KOG1924 RhoA GTPase effector D 93.9 0.095 2.1E-06 55.0 5.4 11 53-63 615-625 (1102)
3 KOG1924 RhoA GTPase effector D 92.5 0.16 3.5E-06 53.4 4.6 9 112-120 718-726 (1102)
4 PHA01732 proline-rich protein 92.5 0.11 2.4E-06 41.5 2.7 9 38-46 28-36 (94)
5 PF01690 PLRV_ORF5: Potato lea 85.9 0.6 1.3E-05 46.1 2.8 11 93-103 121-131 (465)
6 PRK12700 flgH flagellar basal 75.5 13 0.00029 33.4 7.4 37 168-204 149-188 (230)
7 COG5178 PRP8 U5 snRNP spliceos 73.6 2.9 6.3E-05 46.4 3.1 25 48-72 40-64 (2365)
8 KOG3671 Actin regulatory prote 71.9 5.3 0.00011 40.4 4.3 7 80-86 481-487 (569)
9 KOG2675 Adenylate cyclase-asso 69.8 3.4 7.5E-05 41.0 2.5 55 92-147 322-377 (480)
10 cd08677 C2A_Synaptotagmin-13 C 68.1 5.9 0.00013 32.1 3.1 69 103-173 4-82 (118)
11 PF02711 Pap_E4: E4 protein; 65.4 7.5 0.00016 30.9 3.2 12 53-64 41-52 (95)
12 KOG2675 Adenylate cyclase-asso 64.7 3.9 8.5E-05 40.6 1.8 8 166-173 352-359 (480)
13 KOG1830 Wiskott Aldrich syndro 62.6 9.5 0.00021 38.2 3.9 8 111-118 454-461 (518)
14 PHA03417 E4 protein; Provision 58.4 9.6 0.00021 31.6 2.7 9 54-62 61-69 (118)
15 PHA03247 large tegument protei 51.1 29 0.00062 41.5 5.7 20 95-114 3002-3021(3151)
16 PRK10808 outer membrane protei 51.1 16 0.00035 33.2 3.2 38 56-93 226-273 (351)
17 PHA03247 large tegument protei 45.8 39 0.00085 40.5 5.7 8 53-60 2978-2985(3151)
18 PF14173 ComGG: ComG operon pr 44.1 24 0.00051 26.9 2.7 38 162-199 35-72 (95)
19 PF01698 FLO_LFY: Floricaula / 42.8 8.1 0.00018 37.6 0.0 14 96-109 70-83 (386)
20 PF07354 Sp38: Zona-pellucida- 39.0 47 0.001 31.2 4.3 58 167-226 13-79 (271)
21 COG2885 OmpA Outer membrane pr 38.5 14 0.00031 30.6 0.8 38 56-93 85-130 (190)
22 KOG4462 WASP-interacting prote 35.8 58 0.0013 32.2 4.5 23 54-76 385-407 (437)
23 COG5178 PRP8 U5 snRNP spliceos 34.9 33 0.00071 38.8 2.9 32 137-171 134-165 (2365)
24 PF13793 Pribosyltran_N: N-ter 34.4 14 0.00031 29.4 0.2 43 156-198 15-57 (116)
25 KOG1922 Rho GTPase effector BN 31.7 1.1E+02 0.0023 31.5 5.8 43 94-137 471-513 (833)
26 PF07661 MORN_2: MORN repeat v 31.1 69 0.0015 17.5 2.7 22 203-224 1-22 (22)
27 cd07694 Ig2_CD4 Second immunog 31.1 1.1E+02 0.0024 24.1 4.7 64 154-220 16-81 (88)
28 KOG4849 mRNA cleavage factor I 28.7 71 0.0015 31.8 3.9 23 32-54 275-297 (498)
29 KOG1830 Wiskott Aldrich syndro 27.8 1.1E+02 0.0024 31.0 5.0 6 17-22 385-390 (518)
30 KOG1785 Tyrosine kinase negati 27.7 63 0.0014 32.6 3.4 14 41-54 544-557 (563)
31 COG5123 TOA2 Transcription ini 27.6 63 0.0014 26.8 2.8 39 79-118 57-95 (113)
32 PF15152 Kisspeptin: Kisspepti 26.0 25 0.00055 27.5 0.3 33 167-221 46-78 (78)
33 PRK13855 type IV secretion sys 25.7 95 0.0021 30.3 4.1 58 120-181 197-259 (376)
34 KOG1922 Rho GTPase effector BN 24.7 1.4E+02 0.0031 30.5 5.4 10 52-61 380-389 (833)
35 smart00785 AARP2CN AARP2CN (NU 24.4 44 0.00096 25.5 1.4 18 187-204 41-58 (83)
36 PF08142 AARP2CN: AARP2CN (NUC 23.4 52 0.0011 25.1 1.5 16 189-204 45-60 (85)
37 PLN03132 NADH dehydrogenase (u 23.1 40 0.00088 33.4 1.1 13 188-200 270-282 (461)
38 COG0505 CarA Carbamoylphosphat 22.6 61 0.0013 31.6 2.2 39 148-199 42-81 (368)
39 PF05409 Peptidase_C30: Corona 20.5 67 0.0014 30.5 1.9 30 195-224 105-135 (293)
40 PF04625 DEC-1_N: DEC-1 protei 20.1 1.6E+02 0.0035 28.9 4.4 16 164-179 249-264 (407)
No 1
>PHA01732 proline-rich protein
Probab=96.16 E-value=0.009 Score=47.56 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=15.5
Q ss_pred ccccceeeeeeecCCCCCCC
Q 027126 74 FDSLAKLKVSFQNDNKGQIF 93 (228)
Q Consensus 74 L~G~AKLrLAghtD~SG~~~ 93 (228)
-.|.|.||+--|+.+.|+++
T Consensus 61 a~gTasLrIpkqtg~~g~~s 80 (94)
T PHA01732 61 AGGTASLRIPKQSGTQGSIS 80 (94)
T ss_pred ccCcceeEeecccccccccc
Confidence 35778899988888887765
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.91 E-value=0.095 Score=55.01 Aligned_cols=11 Identities=0% Similarity=0.223 Sum_probs=5.4
Q ss_pred eeeeeecCCcc
Q 027126 53 RVTSEFDSDSS 63 (228)
Q Consensus 53 rvtsEfDSe~s 63 (228)
+=.-+|+-|..
T Consensus 615 kpKK~~k~e~~ 625 (1102)
T KOG1924|consen 615 KPKKVYKPEVP 625 (1102)
T ss_pred CccccCCCCCc
Confidence 33445665543
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.53 E-value=0.16 Score=53.38 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=3.8
Q ss_pred hhhhhhhhc
Q 027126 112 EQNAFVKSS 120 (228)
Q Consensus 112 ~rNALvr~~ 120 (228)
-||+++.-+
T Consensus 718 ik~~ILevn 726 (1102)
T KOG1924|consen 718 IKNVILEVN 726 (1102)
T ss_pred HHHHHhhcc
Confidence 344444433
No 4
>PHA01732 proline-rich protein
Probab=92.51 E-value=0.11 Score=41.49 Aligned_cols=9 Identities=0% Similarity=-0.333 Sum_probs=3.5
Q ss_pred CCCCCCCCC
Q 027126 38 QRTSSLFSF 46 (228)
Q Consensus 38 ~~~~~~~~~ 46 (228)
++++.+.+.
T Consensus 28 pppP~p~p~ 36 (94)
T PHA01732 28 PPAPVPEPT 36 (94)
T ss_pred CCCCCCCcc
Confidence 333444443
No 5
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=85.93 E-value=0.6 Score=46.08 Aligned_cols=11 Identities=0% Similarity=-0.339 Sum_probs=5.3
Q ss_pred CCCceeeeecc
Q 027126 93 FEPQLAFTSKH 103 (228)
Q Consensus 93 ~~P~~~~v~K~ 103 (228)
..=..|||+-+
T Consensus 121 dg~~~GlIAY~ 131 (465)
T PF01690_consen 121 DGKWDGLIAYD 131 (465)
T ss_pred CCceeeeEEec
Confidence 33445665533
No 6
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=75.51 E-value=13 Score=33.38 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=26.9
Q ss_pred cEEEEecCCceeeheehh---hhhcceeEEeccccccccC
Q 027126 168 KATFKFPLGEVSLVEREE---EEVKKTLSISGIAKGQILN 204 (228)
Q Consensus 168 rat~~FP~Gevslee~~~---ee~~r~LSv~Gi~k~~~ln 204 (228)
+++=..|||-+-++-+++ +.+++.|-|+||+.-+=.+
T Consensus 149 ~V~~VlpNGNLvI~GeK~i~vN~~~e~irlsGiVRP~DI~ 188 (230)
T PRK12700 149 TVIGVLPNGNLQIAGEKQIAINRGSEYVRFSGVVDPRSIT 188 (230)
T ss_pred EEEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 455678999988875332 4558899999999875443
No 7
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=73.56 E-value=2.9 Score=46.42 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=16.6
Q ss_pred CCCceeeeeeecCCcceeeechhhh
Q 027126 48 SRPALRVTSEFDSDSSIFLHKISCK 72 (228)
Q Consensus 48 Rrp~~rvtsEfDSe~sIF~nkVSA~ 72 (228)
..+++-=.-+-||-..++.-.+|-+
T Consensus 40 k~~~~~g~~~~~~g~~~~~~r~S~k 64 (2365)
T COG5178 40 KQLSIVGDILGHSGNPIYSLRVSDK 64 (2365)
T ss_pred ccHHHhhhhhhhcCCcceeeecccc
Confidence 3344444456788888888888765
No 8
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=71.87 E-value=5.3 Score=40.42 Aligned_cols=7 Identities=29% Similarity=0.055 Sum_probs=2.5
Q ss_pred eeeeeec
Q 027126 80 LKVSFQN 86 (228)
Q Consensus 80 LrLAght 86 (228)
|+.+-++
T Consensus 481 l~~ve~t 487 (569)
T KOG3671|consen 481 LKKVETT 487 (569)
T ss_pred ccceeec
Confidence 3333333
No 9
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=69.76 E-value=3.4 Score=41.02 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCCceeeeecceeeeechhhhhhhhhhccccCCccee-eeecccccccceeeEEEe
Q 027126 92 IFEPQLAFTSKHLSLHYDLEEQNAFVKSSFDVGPKLHF-RAAHDVKAQQGEVGVVAN 147 (228)
Q Consensus 92 ~~~P~~~~v~K~~Sv~yD~e~rNALvr~~~dl~~~l~l-k~~hDvKaqQGEV~vvA~ 147 (228)
...|.+-|..|...|-|....+|.+ =-.+|+.-++.+ +-...+---+|-|+-++-
T Consensus 322 k~pp~~ELeGkkW~VEnq~~~~~~V-i~~~e~kqsvyIykC~~s~iqIkGKvNsItl 377 (480)
T KOG2675|consen 322 KKPPVKELEGKKWRVENQENNKNLV-IDDAELKQSVYIYKCSNSTIQIKGKVNSITL 377 (480)
T ss_pred CCCCceeeccceEEEeeecCCccee-eeeccccceEEEEeccceEEEEeceeeeEEe
Confidence 3457788889999999988555544 456677655553 222233333555554443
No 10
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=68.12 E-value=5.9 Score=32.07 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=49.2
Q ss_pred ceeeeechhh----------hhhhhhhccccCCcceeeeecccccccceeeEEEecCCCCceeeecCCCCCCCCCcEEEE
Q 027126 103 HLSLHYDLEE----------QNAFVKSSFDVGPKLHFRAAHDVKAQQGEVGVVANLGDPGYALELSSPVPYVGYPKATFK 172 (228)
Q Consensus 103 ~~Sv~yD~e~----------rNALvr~~~dl~~~l~lk~~hDvKaqQGEV~vvA~L~Dp~yk~ElSS~vp~~glprat~~ 172 (228)
+||+.||... || |- ..+--.+.+++.+..+-|...-.=++..+.-||-|--.+.-.||...+++.|+.
T Consensus 4 ~fsL~Y~~~~~~L~V~vikA~~-L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~ 81 (118)
T cd08677 4 HYSLSYDKQKAELHVNILEAEN-IS-VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLT 81 (118)
T ss_pred EEEEEEcCcCCEEEEEEEEecC-CC-CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEE
Confidence 5777777754 22 11 222236788888876655444467788888999999999999999999998887
Q ss_pred e
Q 027126 173 F 173 (228)
Q Consensus 173 F 173 (228)
|
T Consensus 82 ~ 82 (118)
T cd08677 82 L 82 (118)
T ss_pred E
Confidence 6
No 11
>PF02711 Pap_E4: E4 protein; InterPro: IPR003861 This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but the function of neither E4 nor E1--E4 is known [].
Probab=65.40 E-value=7.5 Score=30.93 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=7.2
Q ss_pred eeeeeecCCcce
Q 027126 53 RVTSEFDSDSSI 64 (228)
Q Consensus 53 rvtsEfDSe~sI 64 (228)
|.-++.||+.+.
T Consensus 41 R~~sd~ds~~~~ 52 (95)
T PF02711_consen 41 RLPSDSDSSTSQ 52 (95)
T ss_pred CCCCccccCCcc
Confidence 445667766654
No 12
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=64.75 E-value=3.9 Score=40.64 Aligned_cols=8 Identities=0% Similarity=0.422 Sum_probs=3.1
Q ss_pred CCcEEEEe
Q 027126 166 YPKATFKF 173 (228)
Q Consensus 166 lprat~~F 173 (228)
+....+.|
T Consensus 352 ~kqsvyIy 359 (480)
T KOG2675|consen 352 LKQSVYIY 359 (480)
T ss_pred ccceEEEE
Confidence 33334433
No 13
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=62.64 E-value=9.5 Score=38.16 Aligned_cols=8 Identities=0% Similarity=0.343 Sum_probs=4.7
Q ss_pred hhhhhhhh
Q 027126 111 EEQNAFVK 118 (228)
Q Consensus 111 e~rNALvr 118 (228)
+.|+.|+.
T Consensus 454 DaRsdLL~ 461 (518)
T KOG1830|consen 454 DARSDLLA 461 (518)
T ss_pred chHHHHHH
Confidence 45666654
No 14
>PHA03417 E4 protein; Provisional
Probab=58.37 E-value=9.6 Score=31.61 Aligned_cols=9 Identities=0% Similarity=0.121 Sum_probs=5.9
Q ss_pred eeeeecCCc
Q 027126 54 VTSEFDSDS 62 (228)
Q Consensus 54 vtsEfDSe~ 62 (228)
.-|++||..
T Consensus 61 l~sd~ds~~ 69 (118)
T PHA03417 61 LGNDHEDLH 69 (118)
T ss_pred ccCcccccc
Confidence 467888743
No 15
>PHA03247 large tegument protein UL36; Provisional
Probab=51.12 E-value=29 Score=41.49 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=10.7
Q ss_pred Cceeeeecceeeeechhhhh
Q 027126 95 PQLAFTSKHLSLHYDLEEQN 114 (228)
Q Consensus 95 P~~~~v~K~~Sv~yD~e~rN 114 (228)
+-+..-+..+.+|.|.+.++
T Consensus 3002 ~~~~~w~~~~~~~~~~~~~~ 3021 (3151)
T PHA03247 3002 SRVSSWASSLALHEETDPPP 3021 (3151)
T ss_pred CCcchhhhhccccccCCCCC
Confidence 34444455566666665543
No 16
>PRK10808 outer membrane protein A; Reviewed
Probab=51.06 E-value=16 Score=33.23 Aligned_cols=38 Identities=13% Similarity=-0.029 Sum_probs=24.1
Q ss_pred eeecCCcceeeech-------hhhcc---cccceeeeeeecCCCCCCC
Q 027126 56 SEFDSDSSIFLHKI-------SCKLF---DSLAKLKVSFQNDNKGQIF 93 (228)
Q Consensus 56 sEfDSe~sIF~nkV-------SA~aL---~G~AKLrLAghtD~SG~~~ 93 (228)
.-||.+++.+.... ...+. ....+|++.||+|..|+..
T Consensus 226 v~F~~~s~~L~~~~~~~L~~~a~~l~~~~~~~~~v~I~GhtD~~g~~~ 273 (351)
T PRK10808 226 VLFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDA 273 (351)
T ss_pred eEEeCCCcccCHHHHHHHHHHHHHHHhcCCCCceEEEEEeeCCCCChH
Confidence 45888877775332 22221 1235799999999988643
No 17
>PHA03247 large tegument protein UL36; Provisional
Probab=45.82 E-value=39 Score=40.46 Aligned_cols=8 Identities=38% Similarity=0.297 Sum_probs=3.2
Q ss_pred eeeeeecC
Q 027126 53 RVTSEFDS 60 (228)
Q Consensus 53 rvtsEfDS 60 (228)
|+...+.|
T Consensus 2978 ~~pp~~pp 2985 (3151)
T PHA03247 2978 RVPQPAPS 2985 (3151)
T ss_pred CCCCCCCC
Confidence 33444433
No 18
>PF14173 ComGG: ComG operon protein 7
Probab=44.08 E-value=24 Score=26.93 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCCCCCcEEEEecCCceeeheehhhhhcceeEEecccc
Q 027126 162 PYVGYPKATFKFPLGEVSLVEREEEEVKKTLSISGIAK 199 (228)
Q Consensus 162 p~~glprat~~FP~Gevslee~~~ee~~r~LSv~Gi~k 199 (228)
+.....-.+|.||.|+||.+=..+++..-.+++.=..+
T Consensus 35 ~~~~~~~~~~~y~~G~Vsy~~~~~~~~~~~v~l~~~t~ 72 (95)
T PF14173_consen 35 EDEKSQTGSFQYPDGTVSYQITKEDEDVITVTLQCETK 72 (95)
T ss_pred hhcCCCceEEEecCCEEEEEEEeccceEEEEEEEEEec
Confidence 33455667899999999995333332344455544443
No 19
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=42.80 E-value=8.1 Score=37.62 Aligned_cols=14 Identities=36% Similarity=0.356 Sum_probs=0.0
Q ss_pred ceeeeecceeeeec
Q 027126 96 QLAFTSKHLSLHYD 109 (228)
Q Consensus 96 ~~~~v~K~~Sv~yD 109 (228)
++||+...|=-|=|
T Consensus 70 ElGFTvsTLl~M~d 83 (386)
T PF01698_consen 70 ELGFTVSTLLNMTD 83 (386)
T ss_dssp --------------
T ss_pred HhcccHHHHhcccH
Confidence 56776655544444
No 20
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=38.97 E-value=47 Score=31.19 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=42.4
Q ss_pred CcEEEEecCCceeehe---ehhhhhcceeEEeccccccccCceEEeeeec------ccceeeeeeeccc
Q 027126 167 PKATFKFPLGEVSLVE---REEEEVKKTLSISGIAKGQILNGICTAQYEE------EDLKLRYCYKLLV 226 (228)
Q Consensus 167 prat~~FP~Gevslee---~~~ee~~r~LSv~Gi~k~~~lnG~~tA~y~d------~~~~lrY~YKd~~ 226 (228)
|....++|+|.+-=+. ..-++|+ |-+.+|..+.=.+=-||-.|+. |+...++.||..|
T Consensus 13 P~y~W~GP~g~~l~gn~~~nIT~TG~--L~~~~F~esmSG~YTCtLsYk~i~~~~~ee~~v~~~y~f~V 79 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSGNSYVNITETGK--LMFKNFQESMSGSYTCTLSYKPIKAETQEEVEVSNTYKFMV 79 (271)
T ss_pred CceEEECCCCcccCCCCeEEEccCce--EEeeccccccCCceEEEEEEEeccccchhheeeeeEEEEEE
Confidence 5667889988765444 2335455 8899999987777789999998 6777777777554
No 21
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=38.47 E-value=14 Score=30.62 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=26.7
Q ss_pred eeecCCcceeeechhh------hccc--ccceeeeeeecCCCCCCC
Q 027126 56 SEFDSDSSIFLHKISC------KLFD--SLAKLKVSFQNDNKGQIF 93 (228)
Q Consensus 56 sEfDSe~sIF~nkVSA------~aL~--G~AKLrLAghtD~SG~~~ 93 (228)
--||.+++.+..+.-. ..|. ..+++.+.||||..|+-.
T Consensus 85 v~F~~ds~~l~p~~~~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~ 130 (190)
T COG2885 85 VLFDFDSSVLKPKAQATLDELAKYLKKNPITRILVEGHTDSTGSDE 130 (190)
T ss_pred eEecCCccccCHhHHHHHHHHHHHHHhCCCcEEEEEecCCCCCCHH
Confidence 4688888888763322 2222 356799999999999855
No 22
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=35.77 E-value=58 Score=32.21 Aligned_cols=23 Identities=26% Similarity=0.075 Sum_probs=17.8
Q ss_pred eeeeecCCcceeeechhhhcccc
Q 027126 54 VTSEFDSDSSIFLHKISCKLFDS 76 (228)
Q Consensus 54 vtsEfDSe~sIF~nkVSA~aL~G 76 (228)
.|+|=|-|+.+-+|-+|-+..-+
T Consensus 385 ~t~~dd~esr~~fhp~s~~p~Pe 407 (437)
T KOG4462|consen 385 RTSADDDESRFSFHPDSDLPIPE 407 (437)
T ss_pred ccccccccccccccchhccCCCc
Confidence 35788888899999998776553
No 23
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=34.92 E-value=33 Score=38.83 Aligned_cols=32 Identities=25% Similarity=0.192 Sum_probs=16.8
Q ss_pred cccceeeEEEecCCCCceeeecCCCCCCCCCcEEE
Q 027126 137 AQQGEVGVVANLGDPGYALELSSPVPYVGYPKATF 171 (228)
Q Consensus 137 aqQGEV~vvA~L~Dp~yk~ElSS~vp~~glprat~ 171 (228)
++-.||+++-... =++-++-.+|-.+-|..+.
T Consensus 134 e~~~evkvlyh~~---Gaitfvne~prviep~~~a 165 (2365)
T COG5178 134 EDVSEVKVLYHCH---GAITFVNEVPRVIEPQLFA 165 (2365)
T ss_pred hhhheeeEEeecc---ceEEEeecCccccCcceee
Confidence 4445666655432 2445555666666555544
No 24
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=34.39 E-value=14 Score=29.44 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=19.9
Q ss_pred eecCCCCCCCCCcEEEEecCCceeeheehhhhhcceeEEeccc
Q 027126 156 ELSSPVPYVGYPKATFKFPLGEVSLVEREEEEVKKTLSISGIA 198 (228)
Q Consensus 156 ElSS~vp~~glprat~~FP~Gevslee~~~ee~~r~LSv~Gi~ 198 (228)
+|+..+--.--+--+.+||+||+.++-.++=.++++.=|.-+.
T Consensus 15 ~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~ 57 (116)
T PF13793_consen 15 RIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTS 57 (116)
T ss_dssp HHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---S
T ss_pred HHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecC
Confidence 3333333322334577899999999865543445555444443
No 25
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=31.72 E-value=1.1e+02 Score=31.48 Aligned_cols=43 Identities=9% Similarity=-0.069 Sum_probs=18.1
Q ss_pred CCceeeeecceeeeechhhhhhhhhhccccCCcceeeeeccccc
Q 027126 94 EPQLAFTSKHLSLHYDLEEQNAFVKSSFDVGPKLHFRAAHDVKA 137 (228)
Q Consensus 94 ~P~~~~v~K~~Sv~yD~e~rNALvr~~~dl~~~l~lk~~hDvKa 137 (228)
..+++++.+.| .+.--+...|+..+.-++-+..+++-..++..
T Consensus 471 ~~n~~ill~sl-~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~p 513 (833)
T KOG1922|consen 471 PQNIAILLSSL-NMPTEDIPQALLELDDSVLGLDQLEKLLKFAP 513 (833)
T ss_pred ccceeeehhhc-CCchHHHHHHHhccCccccCHHHHHHHHccCC
Confidence 33445555544 23333344455544444333333333333333
No 26
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=31.14 E-value=69 Score=17.50 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=16.1
Q ss_pred cCceEEeeeecccceeeeeeec
Q 027126 203 LNGICTAQYEEEDLKLRYCYKL 224 (228)
Q Consensus 203 lnG~~tA~y~d~~~~lrY~YKd 224 (228)
++|.++--|.+..+.-.-.|||
T Consensus 1 ~~G~~~~yy~nG~l~~~~~y~n 22 (22)
T PF07661_consen 1 LDGEWKFYYENGKLKSEGHYKN 22 (22)
T ss_pred CcceEEEEeCCCCEEEEEEEEC
Confidence 4677777777777777777765
No 27
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=31.06 E-value=1.1e+02 Score=24.10 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=41.0
Q ss_pred eeeecCCCCCCCCC--cEEEEecCCceeeheehhhhhcceeEEeccccccccCceEEeeeecccceeee
Q 027126 154 ALELSSPVPYVGYP--KATFKFPLGEVSLVEREEEEVKKTLSISGIAKGQILNGICTAQYEEEDLKLRY 220 (228)
Q Consensus 154 k~ElSS~vp~~glp--rat~~FP~Gevslee~~~ee~~r~LSv~Gi~k~~~lnG~~tA~y~d~~~~lrY 220 (228)
.++|...-|+...| .++.+=|.|+.. +|... ++++|++.-+-.-|=.-=-|+-.|+....+++-
T Consensus 16 sLtLtl~~~s~s~p~~~i~w~~P~n~~~-~~~~~--~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 16 NLTLTLHGSSNSLPAFKVEWRGPGNKSK-QILNQ--DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred cEEEEEecCCCCCCCccEEEeCCCCccc-eeccC--CccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 34555555555666 889999999944 43333 389999987665543333577777766665553
No 28
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=28.75 E-value=71 Score=31.76 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCCCCCceee
Q 027126 32 PPQPQQQRTSSLFSFPSRPALRV 54 (228)
Q Consensus 32 pp~p~~~~~~~~~~~~Rrp~~rv 54 (228)
||++.++.+..+-.+.-||.+..
T Consensus 275 pp~~~qq~p~pp~~~ppRP~m~l 297 (498)
T KOG4849|consen 275 PPQQIQQQPQPPMGQPPRPMMQL 297 (498)
T ss_pred CchhhccCCCCCCCCCCCccccc
Confidence 33333344444545555565543
No 29
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=27.77 E-value=1.1e+02 Score=30.96 Aligned_cols=6 Identities=33% Similarity=0.755 Sum_probs=2.4
Q ss_pred CCCCCC
Q 027126 17 MVPPPL 22 (228)
Q Consensus 17 ~~~pp~ 22 (228)
++|||+
T Consensus 385 ~~~pph 390 (518)
T KOG1830|consen 385 FLCPPH 390 (518)
T ss_pred cCCCCC
Confidence 344443
No 30
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=27.70 E-value=63 Score=32.58 Aligned_cols=14 Identities=14% Similarity=-0.121 Sum_probs=5.7
Q ss_pred CCCCCCCCCCceee
Q 027126 41 SSLFSFPSRPALRV 54 (228)
Q Consensus 41 ~~~~~~~Rrp~~rv 54 (228)
+++..+..|-..-+
T Consensus 544 ~~a~~r~~rhp~~~ 557 (563)
T KOG1785|consen 544 LSASERQPRHPYTN 557 (563)
T ss_pred CCccccCCCCCcCC
Confidence 44444444433333
No 31
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=27.63 E-value=63 Score=26.83 Aligned_cols=39 Identities=18% Similarity=0.008 Sum_probs=32.5
Q ss_pred eeeeeeecCCCCCCCCCceeeeecceeeeechhhhhhhhh
Q 027126 79 KLKVSFQNDNKGQIFEPQLAFTSKHLSLHYDLEEQNAFVK 118 (228)
Q Consensus 79 KLrLAghtD~SG~~~~P~~~~v~K~~Sv~yD~e~rNALvr 118 (228)
++..-|+.|+.|-+. -+.-|++|+|++.+|-|-+||=-.
T Consensus 57 ~ltfKG~lDtY~fcD-~VWtFi~kn~~~s~~n~~~~a~e~ 95 (113)
T COG5123 57 SLTFKGKLDTYNFCD-GVWTFITKNFVMSLNNEYFNAGEV 95 (113)
T ss_pred eeEEeeccccccccc-ceeEEEecCeEEEecccccccccc
Confidence 388889999998765 467799999999999999988433
No 32
>PF15152 Kisspeptin: Kisspeptin
Probab=26.03 E-value=25 Score=27.52 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=25.3
Q ss_pred CcEEEEecCCceeeheehhhhhcceeEEeccccccccCceEEeeeecccceeeee
Q 027126 167 PKATFKFPLGEVSLVEREEEEVKKTLSISGIAKGQILNGICTAQYEEEDLKLRYC 221 (228)
Q Consensus 167 prat~~FP~Gevslee~~~ee~~r~LSv~Gi~k~~~lnG~~tA~y~d~~~~lrY~ 221 (228)
+..-+.=|.|+|-|| +|+| ..-||=|.+-|||.
T Consensus 46 ~sr~ipap~g~~lVq-Rekd---------------------ls~YNwNSFGLRYG 78 (78)
T PF15152_consen 46 RSRLIPAPRGAVLVQ-REKD---------------------LSAYNWNSFGLRYG 78 (78)
T ss_pred cceeccCCccchhhh-eecc---------------------cccccccccccccC
Confidence 445566789999998 6665 35799999999993
No 33
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=25.69 E-value=95 Score=30.34 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=36.4
Q ss_pred ccccCCcceeeeecccccccceeeEEEecCCCCceeeecCCCCCCCCCcEE-----EEecCCceeeh
Q 027126 120 SFDVGPKLHFRAAHDVKAQQGEVGVVANLGDPGYALELSSPVPYVGYPKAT-----FKFPLGEVSLV 181 (228)
Q Consensus 120 ~~dl~~~l~lk~~hDvKaqQGEV~vvA~L~Dp~yk~ElSS~vp~~glprat-----~~FP~Gevsle 181 (228)
+.||.|.+.....+||-...|.+-+|-+ -...-=|-+|.+- .|--|+- +.+|+| +++.
T Consensus 197 nSDlPG~v~a~Vs~DVYS~~G~~lLIPk--GS~liG~Y~s~v~-~GQ~Rv~V~W~Ri~~P~G-~~I~ 259 (376)
T PRK13855 197 DTNLAGYVKCVLPQDIRGTTNNVVLLDR--GTTVVGEIQRGLQ-QGDARVFVLWDRAETPDH-AMIS 259 (376)
T ss_pred ccCCCCcEEEEEeccccCCCCCEEEecc--cCEEEEEeCCCCc-cccceeeeeeeeEeCCCC-cEEe
Confidence 3577888888888888877777766654 2233334555554 3555554 677888 3443
No 34
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=24.74 E-value=1.4e+02 Score=30.51 Aligned_cols=10 Identities=10% Similarity=-0.021 Sum_probs=4.3
Q ss_pred eeeeeeecCC
Q 027126 52 LRVTSEFDSD 61 (228)
Q Consensus 52 ~rvtsEfDSe 61 (228)
....++.+.+
T Consensus 380 ~~~~~~~~~~ 389 (833)
T KOG1922|consen 380 EGLSSAPGPQ 389 (833)
T ss_pred cccccccCCC
Confidence 3344444444
No 35
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=24.41 E-value=44 Score=25.47 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=15.1
Q ss_pred hhcceeEEeccccccccC
Q 027126 187 EVKKTLSISGIAKGQILN 204 (228)
Q Consensus 187 e~~r~LSv~Gi~k~~~ln 204 (228)
+.++.|.|+|.++|.-|+
T Consensus 41 ~~~~~l~v~GyvRG~~l~ 58 (83)
T smart00785 41 KVDRTLVVYGYVRGTGLN 58 (83)
T ss_pred ccCcEEEEEEEEcCCCCC
Confidence 346789999999998875
No 36
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=23.38 E-value=52 Score=25.10 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.0
Q ss_pred cceeEEeccccccccC
Q 027126 189 KKTLSISGIAKGQILN 204 (228)
Q Consensus 189 ~r~LSv~Gi~k~~~ln 204 (228)
+++|+|+|.++|.-|+
T Consensus 45 ~~~l~v~GyvRG~~l~ 60 (85)
T PF08142_consen 45 DGTLKVYGYVRGSPLS 60 (85)
T ss_pred ceEEEEEEEEcccccc
Confidence 4699999999998875
No 37
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=23.13 E-value=40 Score=33.39 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=9.1
Q ss_pred hcceeEEeccccc
Q 027126 188 VKKTLSISGIAKG 200 (228)
Q Consensus 188 ~~r~LSv~Gi~k~ 200 (228)
+.|+++|+|=|+.
T Consensus 270 gtkl~tvSG~V~~ 282 (461)
T PLN03132 270 GTKLFCISGHVNK 282 (461)
T ss_pred ceEEEEEecccCC
Confidence 5788888876543
No 38
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=22.62 E-value=61 Score=31.59 Aligned_cols=39 Identities=26% Similarity=0.610 Sum_probs=26.4
Q ss_pred cCCCCceeeecCCCCCCCCCcEEEEec-CCceeeheehhhhhcceeEEecccc
Q 027126 148 LGDPGYALELSSPVPYVGYPKATFKFP-LGEVSLVEREEEEVKKTLSISGIAK 199 (228)
Q Consensus 148 L~Dp~yk~ElSS~vp~~glprat~~FP-~Gevslee~~~ee~~r~LSv~Gi~k 199 (228)
|.||+|+=+| +||+|| +|-.-+.++..| ..-.-+.|++-
T Consensus 42 LTDPSY~gQI-----------v~fTyP~IGNyGvn~~d~E--s~~i~~~G~vv 81 (368)
T COG0505 42 LTDPSYKGQI-----------VTFTYPLIGNYGVNDEDFE--SDRIHAAGLVV 81 (368)
T ss_pred ccCCccCceE-----------EEEeccccccccCCchhcc--ccCceEEEEEE
Confidence 5799998887 899999 488877754443 23445555543
No 39
>PF05409 Peptidase_C30: Coronavirus endopeptidase C30; InterPro: IPR008740 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C30 (clan PA(C)). These peptidases are related to serine endopeptidases of family S1 and are restricted to RNA viruses, where they are involved in viral polyprotein processing during replication [, , ]. This entry represents the CoV M-pro which comprises three domains. Domains I and II are six-stranded antiparallel beta barrels and together resemble the architecture of chymotrypsin and of picornaviruses 3C proteinases. The substrate-binding site is located in a cleft between these two domains. The catalytic site is situated at the centre of the cleft. A long loop connects domain II to the C-terminal domain (domain III). This latter domain, a globular cluster of five helices, has been implicated in the proteolytic activity of M-pro. In the active site of M-pro, Cys and His form a catalytic dyad. In contrast to serine proteinases and other cysteine proteinases, which have a catalytic triad, there is no third catalytic residue present [, , , ]. ; GO: 0019082 viral protein processing; PDB: 2VJ1_B 2K7X_A 2Q6D_B 2Q6F_A 1P9U_E 1LVO_B 2AMP_B 1P9S_A 2ZU2_A 3D23_A ....
Probab=20.51 E-value=67 Score=30.52 Aligned_cols=30 Identities=30% Similarity=0.640 Sum_probs=25.1
Q ss_pred eccccccccCceE-Eeeeecccceeeeeeec
Q 027126 195 SGIAKGQILNGIC-TAQYEEEDLKLRYCYKL 224 (228)
Q Consensus 195 ~Gi~k~~~lnG~~-tA~y~d~~~~lrY~YKd 224 (228)
||..|++||||-| +-.|+-+.=.+.++|--
T Consensus 105 n~tI~gSFlnGaCGSvGY~i~g~~v~F~YMH 135 (293)
T PF05409_consen 105 NGTIKGSFLNGACGSVGYNIKGGTVEFVYMH 135 (293)
T ss_dssp TS-BESGCGTTETTEEEEEEETTEEEEEEEE
T ss_pred CCeEEEEEecccCCCCceEecCCEEEEEEEE
Confidence 6889999999999 56799998899999854
No 40
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=20.13 E-value=1.6e+02 Score=28.93 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=11.4
Q ss_pred CCCCcEEEEecCCcee
Q 027126 164 VGYPKATFKFPLGEVS 179 (228)
Q Consensus 164 ~glprat~~FP~Gevs 179 (228)
.-.|.+-|..|.++-.
T Consensus 249 e~vPLlWfRmP~~q~~ 264 (407)
T PF04625_consen 249 EQVPLLWFRMPTTQNE 264 (407)
T ss_pred ccCceeEEeccccccc
Confidence 3567888888887644
Done!