Query 027126
Match_columns 228
No_of_seqs 53 out of 55
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 08:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4erh_A Outer membrane protein 77.7 0.91 3.1E-05 35.0 1.7 38 56-93 24-71 (148)
2 3nb3_A Outer membrane protein 75.7 0.43 1.5E-05 40.4 -0.7 41 53-93 218-268 (346)
3 1zxu_A AT5G01750 protein; PFAM 30.4 61 0.0021 26.3 4.6 30 58-91 57-86 (217)
4 1pk8_A RAT synapsin I; ATP bin 27.7 13 0.00044 34.8 0.0 9 112-120 126-134 (422)
5 3s0y_A Motility protein B; pep 22.0 51 0.0017 26.5 2.6 33 58-91 62-105 (193)
6 3s5j_B Ribose-phosphate pyroph 19.9 51 0.0017 29.6 2.3 55 140-194 2-56 (326)
7 2jxb_A T-cell surface glycopro 19.4 1.4E+02 0.0046 20.7 4.1 41 22-62 4-44 (86)
8 3tlo_A 3CL-Pro, 3CLP, 3C-like 19.3 42 0.0014 30.7 1.6 28 195-222 132-161 (303)
9 3s06_A Motility protein B; pep 19.1 46 0.0016 26.0 1.7 37 58-94 35-85 (166)
10 2brj_A Arabidopsis thaliana ge 18.3 1.7E+02 0.0059 25.0 5.1 55 169-225 87-147 (188)
No 1
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=77.66 E-value=0.91 Score=35.00 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=25.4
Q ss_pred eeecCCcceeeec-------hhhhccc---ccceeeeeeecCCCCCCC
Q 027126 56 SEFDSDSSIFLHK-------ISCKLFD---SLAKLKVSFQNDNKGQIF 93 (228)
Q Consensus 56 sEfDSe~sIF~nk-------VSA~aL~---G~AKLrLAghtD~SG~~~ 93 (228)
--||..++.+... +...+.. ...+|.+.||+|..|+..
T Consensus 24 v~F~~~s~~l~~~~~~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~ 71 (148)
T 4erh_A 24 VLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDA 71 (148)
T ss_dssp HHBCTTCCSBCHHHHHHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTC
T ss_pred eEecCCccccCHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHH
Confidence 4688888877633 2222222 245799999999999765
No 2
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=75.67 E-value=0.43 Score=40.43 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred eeeeeecCCcceeee-------chhhhccc---ccceeeeeeecCCCCCCC
Q 027126 53 RVTSEFDSDSSIFLH-------KISCKLFD---SLAKLKVSFQNDNKGQIF 93 (228)
Q Consensus 53 rvtsEfDSe~sIF~n-------kVSA~aL~---G~AKLrLAghtD~SG~~~ 93 (228)
..+--||..++.+.. ++...+.. ...+|++.||+|..|+..
T Consensus 218 ~~~~~F~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~i~i~Ghtd~~g~~~ 268 (346)
T 3nb3_A 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDA 268 (346)
T ss_dssp ---------------------------------------------------
T ss_pred ccceEecCCccccCHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCCCCHH
Confidence 334457776666543 23222222 235799999999988754
No 3
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=30.42 E-value=61 Score=26.32 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=14.8
Q ss_pred ecCCcceeeechhhhcccccceeeeeeecCCCCC
Q 027126 58 FDSDSSIFLHKISCKLFDSLAKLKVSFQNDNKGQ 91 (228)
Q Consensus 58 fDSe~sIF~nkVSA~aL~G~AKLrLAghtD~SG~ 91 (228)
||+++.+..-. ..+.+..-.++.| .|.+|+
T Consensus 57 ~D~~G~~vf~V-~~~~~~~~~~~~l---~D~~G~ 86 (217)
T 1zxu_A 57 TDVNGNLLFKV-KEPVFGLHDKRVL---LDGSGT 86 (217)
T ss_dssp EETTSCEEEEE-ECSSTTCCSEEEE---ECTTSC
T ss_pred EeCCCCEEEEE-EccccCCCCEEEE---ECCCCC
Confidence 67777665542 2233322223444 566664
No 4
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=27.68 E-value=13 Score=34.84 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=4.0
Q ss_pred hhhhhhhhc
Q 027126 112 EQNAFVKSS 120 (228)
Q Consensus 112 ~rNALvr~~ 120 (228)
+.|...+|.
T Consensus 126 dw~K~f~~~ 134 (422)
T 1pk8_A 126 DWAKYFKGK 134 (422)
T ss_dssp CHHHHHTTC
T ss_pred hHHHHhccc
Confidence 344444443
No 5
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Probab=21.98 E-value=51 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=22.1
Q ss_pred ecCCcceee-e-------chhhhcccc---cceeeeeeecCCCCC
Q 027126 58 FDSDSSIFL-H-------KISCKLFDS---LAKLKVSFQNDNKGQ 91 (228)
Q Consensus 58 fDSe~sIF~-n-------kVSA~aL~G---~AKLrLAghtD~SG~ 91 (228)
||+.++.+. . .+. ..+.. ..+|.+.||+|..|.
T Consensus 62 F~~~sa~L~~~~~~~~L~~ia-~~l~~~~~~~~i~I~GhTD~~g~ 105 (193)
T 3s0y_A 62 FENATSDAINQDMMLYIERIA-KIIQKLPKRVHINVRGFTDDTPL 105 (193)
T ss_dssp BSSTTCCCBCGGGHHHHHHHH-HHHHTSCTTCEEEEEECCCSCCC
T ss_pred eCCCCcccCCHHHHHHHHHHH-HHHHhCCCceEEEEEEEeCCCCC
Confidence 888888773 2 222 22322 337999999999998
No 6
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=19.92 E-value=51 Score=29.56 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=0.0
Q ss_pred ceeeEEEecCCCCceeeecCCCCCCCCCcEEEEecCCceeeheehhhhhcceeEE
Q 027126 140 GEVGVVANLGDPGYALELSSPVPYVGYPKATFKFPLGEVSLVEREEEEVKKTLSI 194 (228)
Q Consensus 140 GEV~vvA~L~Dp~yk~ElSS~vp~~glprat~~FP~Gevslee~~~ee~~r~LSv 194 (228)
.++++++--+++..+-+|+..+--.--+--+-+||+||+.++=.+.-.++.+.-|
T Consensus 2 ~~~~if~g~~~~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~esvrg~dV~ii 56 (326)
T 3s5j_B 2 PNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIV 56 (326)
T ss_dssp -CEEEEECSSCCHHHHHHHHHTTCCCCCEEEEECTTSCEEEEECSCCTTCEEEEE
T ss_pred CceEEEECCCCHHHHHHHHHHhCCceeeeEEeECCCCCEEEEECCCcCCCcEEEE
No 7
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}
Probab=19.45 E-value=1.4e+02 Score=20.74 Aligned_cols=41 Identities=10% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeeecCCc
Q 027126 22 LDPQPQPSPSPPQPQQQRTSSLFSFPSRPALRVTSEFDSDS 62 (228)
Q Consensus 22 ~~p~p~p~p~pp~p~~~~~~~~~~~~Rrp~~rvtsEfDSe~ 62 (228)
+.||++|+|.-.++.+...+.........-+|+.-.|+.+.
T Consensus 4 ~~pP~~~~p~~~~~~~~~~~~~~~~~~~~~~~alydy~~~~ 44 (86)
T 2jxb_A 4 ERPPPVPNPDYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQ 44 (86)
T ss_dssp CCCCCCSCCCSCCSSSCCCCCCCCCCCCEEEEESSCCCCCS
T ss_pred CCCCCCCCccccCcCCCcccccccCCCceEEEECccCCCCC
No 8
>3tlo_A 3CL-Pro, 3CLP, 3C-like proteinase; hydrolysis, hydrolase, protein binding; 1.60A {Human coronavirus} PDB: 2zu2_A 1p9s_A
Probab=19.26 E-value=42 Score=30.66 Aligned_cols=28 Identities=32% Similarity=0.797 Sum_probs=0.0
Q ss_pred eccccccccCceE-Eeeee-cccceeeeee
Q 027126 195 SGIAKGQILNGIC-TAQYE-EEDLKLRYCY 222 (228)
Q Consensus 195 ~Gi~k~~~lnG~~-tA~y~-d~~~~lrY~Y 222 (228)
||..|++||||-| +-.|+ +++-.+.++|
T Consensus 132 N~TIkgSFl~GaCGSvGyni~~~g~V~F~Y 161 (303)
T 3tlo_A 132 NFTIKGSFINGACGSPGYNVRNDGTVEFCY 161 (303)
T ss_dssp TSCBCCCCCTTCTTCEEEEECTTSCEEEEE
T ss_pred CCeEEEEEEcccCCCCceEeeCCcEEEEEE
No 9
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation, chemotaxis, bacte flagellar motor, membrane, motor protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A 3s02_A
Probab=19.10 E-value=46 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred ecCCcceeeechhhhcccccce----------eeeeeecCCCCC----CCC
Q 027126 58 FDSDSSIFLHKISCKLFDSLAK----------LKVSFQNDNKGQ----IFE 94 (228)
Q Consensus 58 fDSe~sIF~nkVSA~aL~G~AK----------LrLAghtD~SG~----~~~ 94 (228)
||..++.+.+.-+...|+.+|. |.+.||+|..|. ..+
T Consensus 35 F~~~s~~l~~~~~~~~L~~ia~~l~~~~~~~~i~I~GhTD~~g~~~~~~~~ 85 (166)
T 3s06_A 35 FENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKS 85 (166)
T ss_dssp BSCSSSCCBCGGGHHHHHHHHHHGGGSCTTCEEEEEEEEESCCCCCTTCCS
T ss_pred ccCCCceeCCHHHHHHHHHHHHHHHhCCCCceEEEEEeeCCCCcccccchh
No 10
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=18.32 E-value=1.7e+02 Score=25.03 Aligned_cols=55 Identities=29% Similarity=0.300 Sum_probs=0.0
Q ss_pred EEEEe---cCCceeeheehhhhhcceeEE---eccccccccCceEEeeeecccceeeeeeecc
Q 027126 169 ATFKF---PLGEVSLVEREEEEVKKTLSI---SGIAKGQILNGICTAQYEEEDLKLRYCYKLL 225 (228)
Q Consensus 169 at~~F---P~Gevslee~~~ee~~r~LSv---~Gi~k~~~lnG~~tA~y~d~~~~lrY~YKd~ 225 (228)
+|++| +-|+||++----+=.+-.|+| +||.++ .-|+.-++=--...+++|.+..+
T Consensus 87 ~tyS~yfgd~GhISvQGpy~t~~Dt~LAITGGTGif~g--A~G~Vkl~~i~~P~k~~yTf~L~ 147 (188)
T 2brj_A 87 ATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEG--AYGQVKLQQLVYPTKLFYTFYLK 147 (188)
T ss_dssp EEEEEECGGGEEEEEEEEEETTBCEEEEEEEEEETTTT--CEEEEEEEEEETTTEEEEEEEEE
T ss_pred EEEEEEeCCCceEEEeccccccccceeeEecCcceEcc--eEEEEEEEeeccCceEEEEEEEe
Done!