Query 027126
Match_columns 228
No_of_seqs 53 out of 55
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 08:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027126.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027126hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dkua1 c.61.1.2 (A:8-166) Pho 23.9 12 0.00086 28.4 1.1 28 169-196 29-56 (159)
2 d2c4ka1 c.61.1.2 (A:7-166) PRP 21.8 20 0.0014 27.1 2.0 27 169-195 32-58 (160)
3 d1wfma_ b.7.1.2 (A:) Synaptota 21.4 18 0.0013 25.2 1.6 48 125-172 46-93 (138)
4 d2apoa1 b.122.1.1 (A:247-331) 17.5 50 0.0037 21.9 3.2 41 105-147 4-44 (85)
5 d2ey4a1 b.122.1.1 (A:253-336) 16.9 61 0.0045 21.3 3.5 39 106-146 4-42 (84)
6 d2hqsc1 d.79.7.1 (C:68-173) Pe 16.7 21 0.0016 24.0 1.0 16 77-92 33-48 (106)
7 d2dk8a1 a.4.5.85 (A:8-75) DNA- 16.5 20 0.0014 24.6 0.8 10 215-224 59-68 (68)
8 d1vcaa2 b.1.1.4 (A:1-90) Vascu 15.3 1.3E+02 0.0093 18.5 4.9 58 155-212 19-76 (90)
9 d1q7ha1 b.122.1.1 (A:69-153) H 15.2 68 0.005 21.0 3.4 39 105-145 4-42 (85)
10 d1iq8a3 b.122.1.1 (A:506-582) 15.1 60 0.0044 21.0 3.1 40 105-146 4-43 (77)
No 1
>d1dkua1 c.61.1.2 (A:8-166) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=23.86 E-value=12 Score=28.42 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=18.7
Q ss_pred EEEEecCCceeeheehhhhhcceeEEec
Q 027126 169 ATFKFPLGEVSLVEREEEEVKKTLSISG 196 (228)
Q Consensus 169 at~~FP~Gevslee~~~ee~~r~LSv~G 196 (228)
-.=+||+||+.++-.+.-.++.+.-|..
T Consensus 29 ~~~~FpDGE~~v~i~~~vrg~dv~ivqs 56 (159)
T d1dkua1 29 SVTRFSDGEVQINIEESIRGCDCYIIQS 56 (159)
T ss_dssp EEEECTTSCEEEEECSCCTTCEEEEECC
T ss_pred EEEEcCCCCEEEEeecCCCCCceEEEec
Confidence 3447999999998655544555555543
No 2
>d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.80 E-value=20 Score=27.11 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=17.9
Q ss_pred EEEEecCCceeeheehhhhhcceeEEe
Q 027126 169 ATFKFPLGEVSLVEREEEEVKKTLSIS 195 (228)
Q Consensus 169 at~~FP~Gevslee~~~ee~~r~LSv~ 195 (228)
-.-+||+||+.++-.++-.++.+.-|.
T Consensus 32 ~~~~F~DGE~~v~i~e~vrg~~V~ivq 58 (160)
T d2c4ka1 32 VVYQETNGETRVEIKESVRGQDIFIIQ 58 (160)
T ss_dssp EEEECTTSCEEEEECSCCTTCCEEEEC
T ss_pred EEEECCCCCeeeccCccccCCceEEEe
Confidence 345899999999855543445555444
No 3
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.43 E-value=18 Score=25.22 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=23.9
Q ss_pred CcceeeeecccccccceeeEEEecCCCCceeeecCCCCCCCCCcEEEE
Q 027126 125 PKLHFRAAHDVKAQQGEVGVVANLGDPGYALELSSPVPYVGYPKATFK 172 (228)
Q Consensus 125 ~~l~lk~~hDvKaqQGEV~vvA~L~Dp~yk~ElSS~vp~~glprat~~ 172 (228)
+.+++.+..+.+...-.-+++.+..||.|.-.+...++...+...++.
T Consensus 46 pyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~ 93 (138)
T d1wfma_ 46 CYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLT 93 (138)
T ss_dssp EEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEE
T ss_pred cEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEE
Confidence 456666654433222223344455566666555555555555544443
No 4
>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=17.52 E-value=50 Score=21.93 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=30.5
Q ss_pred eeeechhhhhhhhhhccccCCcceeeeecccccccceeeEEEe
Q 027126 105 SLHYDLEEQNAFVKSSFDVGPKLHFRAAHDVKAQQGEVGVVAN 147 (228)
Q Consensus 105 Sv~yD~e~rNALvr~~~dl~~~l~lk~~hDvKaqQGEV~vvA~ 147 (228)
++..|-..-+|+.+|+ ||-..--.++..|++..+ +|.++..
T Consensus 4 ~v~Vd~~Av~ai~~Ga-~L~~pGV~~~~~~~~~Gd-~V~V~~~ 44 (85)
T d2apoa1 4 KVVVKDSAVDAICHGA-DVYVRGIAKLSKGIGKGE-TVLVETL 44 (85)
T ss_dssp EEEECHHHHHHHHTTC-CEEGGGEEEEETTCCTTC-EEEEECT
T ss_pred EEEECccHHHHHHcCC-CccccEEEEEcCCCcCCC-EEEEEeC
Confidence 4667888899999885 674445567888999888 7777643
No 5
>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=16.89 E-value=61 Score=21.35 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=30.6
Q ss_pred eeechhhhhhhhhhccccCCcceeeeecccccccceeeEEE
Q 027126 106 LHYDLEEQNAFVKSSFDVGPKLHFRAAHDVKAQQGEVGVVA 146 (228)
Q Consensus 106 v~yD~e~rNALvr~~~dl~~~l~lk~~hDvKaqQGEV~vvA 146 (228)
+..|-..-+|+.+|+ ||-..--+++..+++..+ +|.++.
T Consensus 4 v~Vd~~A~~ai~~Ga-~l~~~GV~~~~~~f~~Gd-~V~I~~ 42 (84)
T d2ey4a1 4 VWIKDSAVAAVTHGA-DLAVPGIAKLHAGIKRGD-LVAIMT 42 (84)
T ss_dssp EEECHHHHHHHTTTC-CEEGGGEEEEETTCCTTC-EEEEEE
T ss_pred EEEChhHHHHHHcCC-CcCCCeEEEEcCCCCCCC-EEEEEe
Confidence 677888999999885 786666677888898887 777754
No 6
>d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Escherichia coli [TaxId: 562]}
Probab=16.72 E-value=21 Score=23.96 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.1
Q ss_pred cceeeeeeecCCCCCC
Q 027126 77 LAKLKVSFQNDNKGQI 92 (228)
Q Consensus 77 ~AKLrLAghtD~SG~~ 92 (228)
-.++.+.||+|..|..
T Consensus 33 ~~~i~I~GhtD~~g~~ 48 (106)
T d2hqsc1 33 SYKVTVEGHADERGTP 48 (106)
T ss_dssp TCCEEEEECCCSSSCH
T ss_pred CcEEEEEecccccchh
Confidence 4579999999998874
No 7
>d2dk8a1 a.4.5.85 (A:8-75) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.52 E-value=20 Score=24.59 Aligned_cols=10 Identities=30% Similarity=0.192 Sum_probs=8.1
Q ss_pred cceeeeeeec
Q 027126 215 DLKLRYCYKL 224 (228)
Q Consensus 215 ~~~lrY~YKd 224 (228)
.-+|.|+|||
T Consensus 59 g~~LiYr~KD 68 (68)
T d2dk8a1 59 NTGLLYRIKD 68 (68)
T ss_dssp SSSEEEEECC
T ss_pred CCEEEEecCC
Confidence 4478999998
No 8
>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.29 E-value=1.3e+02 Score=18.52 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=38.4
Q ss_pred eeecCCCCCCCCCcEEEEecCCceeeheehhhhhcceeEEeccccccccCceEEeeee
Q 027126 155 LELSSPVPYVGYPKATFKFPLGEVSLVEREEEEVKKTLSISGIAKGQILNGICTAQYE 212 (228)
Q Consensus 155 ~ElSS~vp~~glprat~~FP~Gevslee~~~ee~~r~LSv~Gi~k~~~lnG~~tA~y~ 212 (228)
+.|.+.+-..-.|.++..+..+.+.-..........+|.|..+-..+-.+=.|+|.-.
T Consensus 19 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~ 76 (90)
T d1vcaa2 19 VSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCE 76 (90)
T ss_dssp EEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred EEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeC
Confidence 4555555444456666667777665444444445678999999888877777888643
No 9
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=15.23 E-value=68 Score=21.03 Aligned_cols=39 Identities=8% Similarity=-0.014 Sum_probs=28.0
Q ss_pred eeeechhhhhhhhhhccccCCcceeeeecccccccceeeEE
Q 027126 105 SLHYDLEEQNAFVKSSFDVGPKLHFRAAHDVKAQQGEVGVV 145 (228)
Q Consensus 105 Sv~yD~e~rNALvr~~~dl~~~l~lk~~hDvKaqQGEV~vv 145 (228)
.|..|....++|.+| +||-..--.++..+++..+ +|.++
T Consensus 4 ~I~Vd~gA~~~l~~G-A~L~~pGV~~~~~~~~~gd-~V~I~ 42 (85)
T d1q7ha1 4 IVTVDEGAEPHILNG-SDLFAPGIVSMDDSIRKGD-MIFVK 42 (85)
T ss_dssp EEEECTTTHHHHTTT-CCEEGGGEEEECTTCCTTC-EEEEE
T ss_pred EEEECcCHHHHHHCC-CCcCCCccEECCCCCCCCC-EEEEE
Confidence 467888899999987 5784444457788888776 66654
No 10
>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.15 E-value=60 Score=20.99 Aligned_cols=40 Identities=25% Similarity=0.139 Sum_probs=31.6
Q ss_pred eeeechhhhhhhhhhccccCCcceeeeecccccccceeeEEE
Q 027126 105 SLHYDLEEQNAFVKSSFDVGPKLHFRAAHDVKAQQGEVGVVA 146 (228)
Q Consensus 105 Sv~yD~e~rNALvr~~~dl~~~l~lk~~hDvKaqQGEV~vvA 146 (228)
.|..|-..-.++.+| +||-..--.++..+++..+ +|.++.
T Consensus 4 rV~Vd~gA~~~v~~G-a~l~~~GV~~~~~~~~~Gd-~V~I~~ 43 (77)
T d1iq8a3 4 RVVVNKEAEPFARKG-KDVFAKFVIFADPGIRPYD-EVLVVN 43 (77)
T ss_dssp EEEECTTTHHHHHTT-CCEEGGGEEEECTTCCTTC-EEEEEC
T ss_pred EEEECcchHHHHHhc-CCcccCeEEEEcCCCCCCC-EEEEEE
Confidence 678899999999988 5786666668889998887 776654
Done!