BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027127
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 90/154 (58%), Gaps = 11/154 (7%)
Query: 70 EYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGT 129
+ GC+HY R C ++APCC++++ CR CH D H + R +V +V C C
Sbjct: 17 QRGCEHYDRGCLLKAPCCDKLYTCRLCH---------DNNEDHQLDRFKVKEVQCINCEK 67
Query: 130 EQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCC 189
Q QQ C C GEY+C+ C LFD D KKQYHC+ CGICRIG ++FFHC KC C
Sbjct: 68 IQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLC 125
Query: 190 YSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVA 223
+M L+ H C+E +CP+C E IH + VA
Sbjct: 126 LAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVA 159
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 88/152 (57%), Gaps = 11/152 (7%)
Query: 72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
GC+HY R C ++APCC++++ CR CH D H + R +V +V C C Q
Sbjct: 19 GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 69
Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYS 191
QQ C +C GEY+C C LFD D K+QYHC+ CGICRIG ++FFHC KC C +
Sbjct: 70 HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLT 127
Query: 192 MLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVA 223
L+ H C+E +CP+C E IH + VA
Sbjct: 128 TNLRGKHKCIENVSRQNCPICLEDIHTSRVVA 159
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 124 bits (310), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 19/183 (10%)
Query: 52 EESTNHNGSTELLRKGFME-----YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINV 106
+ES + S+ L K + + GC HY R C+++ C+E + CRHCHN+A +
Sbjct: 116 KESDENQLSSSDLEKTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACD---- 171
Query: 107 DQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHC 166
H + R V ++C +C Q Q C C CMG Y+C CKL+DDD +K YHC
Sbjct: 172 -----HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHC 226
Query: 167 DGCGICRIGG--CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFPVAE 224
D CGICRIG D++FHC C C + + N+H C+E + +CP+C E Y F E
Sbjct: 227 DDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGE---YMFNSRE 283
Query: 225 RKI 227
R I
Sbjct: 284 RVI 286
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 35.8 bits (81), Expect = 0.27, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 40 YSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRC---------RIRAPCCNEI 90
Y+ LA E V E + + +L R GF CQ R C + C +E
Sbjct: 166 YAGLASVEPYVPEFTVSPFAVQKLSRYGFNTERCQAVLRMCDGDVGASLEHLLTQCFSET 225
Query: 91 FDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTE--QKVQQVCVNCGVCMGEYF 148
F R +EA+N I++D+ + R E + S+CG + +++Q G+ + EY
Sbjct: 226 FGERMKISEAVNQISLDECMEQ---RQEEAFALKSICGEKFIERIQNRVWTIGLEL-EYL 281
Query: 149 CESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCR 187
+ S K + IC+ N +KCR
Sbjct: 282 TSRFRKSKPKESTKNVQENSLEICKFYLKGNCKFGSKCR 320
>sp|Q83I36|DDL_TROW8 D-alanine--D-alanine ligase OS=Tropheryma whipplei (strain TW08/27)
GN=ddl PE=3 SV=1
Length = 347
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 39 SYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRR 78
S +L EF++ + N +G E+ K F E GC+HY R
Sbjct: 255 SAKYLNPVEFVIPAQFDNTDGYAEIASKVFFELGCRHYAR 294
>sp|Q83G28|DDL_TROWT D-alanine--D-alanine ligase OS=Tropheryma whipplei (strain Twist)
GN=ddl PE=3 SV=1
Length = 347
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 39 SYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRR 78
S +L EF++ + N +G E+ K F E GC+HY R
Sbjct: 255 SAKYLNPVEFVIPAQFDNTDGYAEIASKVFFELGCRHYAR 294
>sp|Q5R5T1|FGD3_PONAB FYVE, RhoGEF and PH domain-containing protein 3 OS=Pongo abelii
GN=FGD3 PE=2 SV=1
Length = 737
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 149 CESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNK-----CRCCY 190
C+SC + +K+++HC CG+ G C F N CR C+
Sbjct: 538 CKSCGETFNSITKRRHHCKLCGVVICGKCSEFKAENSRQSRVCRECF 584
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 136 VCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKC 186
VC NCG + Y C C+ + D K + C+ CG C+ D + C
Sbjct: 3670 VCGNCGENV--YQCHKCRSINYD-EKDPFLCNACGFCKYARFDFMLYAKPC 3717
>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
Length = 5183
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 136 VCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKC 186
VC NCG + Y C C+ + D K + C+ CG C+ D + C
Sbjct: 3673 VCGNCGENV--YQCHKCRSINYD-EKDPFLCNACGFCKYARFDFMLYAKPC 3720
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 136 VCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKC 186
VC NCG + Y C C+ + D K + C+ CG C+ D + C
Sbjct: 3684 VCGNCGENV--YQCHKCRSINYD-EKDPFLCNACGFCKYARFDFMLYAKPC 3731
>sp|Q812E4|SYTL5_RAT Synaptotagmin-like protein 5 OS=Rattus norvegicus GN=Sytl5 PE=2
SV=1
Length = 753
Score = 32.7 bits (73), Expect = 2.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 17/63 (26%)
Query: 129 TEQKVQQVCVNCGVCMGEYF-----CESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHC 183
T Q+ +VCV+C +G F C++C L C CR+ G D + C
Sbjct: 56 THQEANRVCVHCQKSLGLIFDRGAPCQACSL------------RVCSECRVTGLDGSWKC 103
Query: 184 NKC 186
C
Sbjct: 104 TVC 106
>sp|Q80T23|SYTL5_MOUSE Synaptotagmin-like protein 5 OS=Mus musculus GN=Sytl5 PE=1 SV=1
Length = 753
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 17/63 (26%)
Query: 129 TEQKVQQVCVNCGVCMGEYF-----CESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHC 183
T Q+ +VCV+C +G F C++C L C CR+ G D + C
Sbjct: 56 THQEASRVCVHCHKTLGLIFDRGDPCQACSL------------RVCSECRVTGLDGSWKC 103
Query: 184 NKC 186
C
Sbjct: 104 TVC 106
>sp|Q3MIN7|RGL3_HUMAN Ral guanine nucleotide dissociation stimulator-like 3 OS=Homo
sapiens GN=RGL3 PE=1 SV=2
Length = 710
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 23 EPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTE 62
EP+ST K +IFS + +HL+ RE L EE+T GS E
Sbjct: 368 EPLSTFRKLSQIFSDEN-NHLSSREILFQEEAT--EGSQE 404
>sp|Q5JSP0|FGD3_HUMAN FYVE, RhoGEF and PH domain-containing protein 3 OS=Homo sapiens
GN=FGD3 PE=1 SV=1
Length = 725
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 149 CESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNK-----CRCCY 190
C+SC + +K+++HC CG G C F N CR C+
Sbjct: 538 CKSCGETFNSITKRRHHCKLCGAVICGKCSEFKAENSRQSRVCRDCF 584
>sp|P21951|DPOE_YEAST DNA polymerase epsilon catalytic subunit A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=POL2 PE=1 SV=1
Length = 2222
Score = 31.6 bits (70), Expect = 5.2, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 90 IFDCRHCH---NEAMNNINVDQKLRHDIPRHEVNQVICSLC 127
IF C CH N+ + ++ QKLR DI + + + CS C
Sbjct: 2127 IFSCVRCHKAFNQVLLQEHLIQKLRSDIESYLIQDLRCSRC 2167
>sp|O60140|YNS9_SCHPO Uncharacterized protein C18H10.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC18H10.09 PE=4 SV=2
Length = 495
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 72 GCQHYRRRCR-IRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTE 130
C+HY++ R R CC+ ++ C CH+ N+ H N++IC C E
Sbjct: 395 ACEHYKKSFRWFRFSCCDRVYPCDECHDADQNHT-----FEH------ANRIICGYCAME 443
Query: 131 Q--KVQQVCVNCG 141
K C +CG
Sbjct: 444 SFYKKDATCPHCG 456
>sp|Q9NB71|HIW_DROME E3 ubiquitin-protein ligase highwire OS=Drosophila melanogaster
GN=hiw PE=1 SV=2
Length = 5233
Score = 30.4 bits (67), Expect = 9.8, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 152 CKLFDDDTSKKQYHCDGCG-ICRIGGCDNFFHCN-KCRCCYSMLLKNSHPCVEGAMHHDC 209
C DD + C+ CG +C G CD F H N K R + K + +H C
Sbjct: 4811 CSNHDDGETAAIIQCETCGSLC--GDCDRFLHLNRKTRSHKRTVCKEEEEAIRVELHESC 4868
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.138 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,547,482
Number of Sequences: 539616
Number of extensions: 3565498
Number of successful extensions: 13315
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 13155
Number of HSP's gapped (non-prelim): 233
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)