Query 027127
Match_columns 228
No_of_seqs 163 out of 410
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:23:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 6.7E-59 2.3E-63 384.0 12.2 134 63-207 9-142 (143)
2 2jrp_A Putative cytoplasmic pr 93.3 0.036 1.2E-06 41.8 2.1 29 122-155 32-60 (81)
3 2jne_A Hypothetical protein YF 81.8 0.77 2.6E-05 35.9 2.5 11 145-155 80-90 (101)
4 2ysm_A Myeloid/lymphoid or mix 77.3 2.2 7.4E-05 32.1 3.7 30 162-191 47-80 (111)
5 2dkt_A Ring finger and CHY zin 62.2 2.6 8.8E-05 34.5 1.2 32 145-176 97-128 (143)
6 2ecm_A Ring finger and CHY zin 55.9 4.4 0.00015 25.6 1.3 17 204-220 3-19 (55)
7 3j20_Y 30S ribosomal protein S 55.9 5.5 0.00019 26.9 1.8 10 133-142 18-27 (50)
8 2jrp_A Putative cytoplasmic pr 55.8 8.7 0.0003 28.7 3.0 26 121-146 18-43 (81)
9 2i13_A AART; DNA binding, zinc 52.8 5 0.00017 31.0 1.4 14 178-191 131-144 (190)
10 3u5c_f 40S ribosomal protein S 49.8 8.8 0.0003 30.9 2.4 24 131-154 115-146 (152)
11 2jne_A Hypothetical protein YF 48.8 9.3 0.00032 29.8 2.3 54 134-192 32-93 (101)
12 2dmd_A Zinc finger protein 64, 48.3 16 0.00055 24.6 3.3 14 178-191 62-75 (96)
13 2k4x_A 30S ribosomal protein S 46.0 15 0.00051 25.1 2.8 8 135-142 19-26 (55)
14 2ayj_A 50S ribosomal protein L 43.0 35 0.0012 23.9 4.3 26 118-143 16-42 (56)
15 2kdx_A HYPA, hydrogenase/ureas 42.4 8.3 0.00029 29.4 1.1 10 121-130 73-82 (119)
16 2ko5_A Ring finger protein Z; 41.8 6.4 0.00022 30.6 0.4 55 142-223 24-78 (99)
17 1vq8_Z 50S ribosomal protein L 41.8 10 0.00034 28.2 1.5 34 132-176 25-58 (83)
18 1vd4_A Transcription initiatio 40.5 19 0.00065 23.2 2.6 9 180-188 39-47 (62)
19 4ayb_P DNA-directed RNA polyme 38.7 16 0.00054 25.0 1.9 27 145-171 2-31 (48)
20 2ee8_A Protein ODD-skipped-rel 37.6 21 0.00071 24.6 2.6 10 120-129 16-25 (106)
21 1ryq_A DNA-directed RNA polyme 37.3 20 0.00069 26.0 2.4 24 119-143 9-32 (69)
22 1twf_L ABC10-alpha, DNA-direct 36.8 17 0.00057 26.2 1.9 7 165-171 47-53 (70)
23 2fiy_A Protein FDHE homolog; F 36.3 29 0.001 31.1 3.9 26 119-144 206-232 (309)
24 2drp_A Protein (tramtrack DNA- 36.0 5.9 0.0002 25.2 -0.6 9 162-170 39-47 (66)
25 3lpe_B DNA-directed RNA polyme 35.7 15 0.00053 25.7 1.6 19 123-142 3-21 (59)
26 2dlq_A GLI-kruppel family memb 35.6 24 0.00083 24.6 2.7 14 178-191 92-105 (124)
27 2epr_A POZ-, at HOOK-, and zin 34.2 24 0.00081 21.1 2.1 9 162-170 39-47 (48)
28 3shb_A E3 ubiquitin-protein li 33.6 53 0.0018 23.6 4.2 33 178-214 39-76 (77)
29 1x4s_A Protein FON, zinc finge 33.0 19 0.00065 25.4 1.7 24 120-143 10-35 (59)
30 2xzm_9 RPS31E; ribosome, trans 32.9 18 0.00061 30.5 1.8 22 134-155 113-140 (189)
31 1wg2_A Zinc finger (AN1-like) 32.7 35 0.0012 24.4 3.0 32 169-201 18-51 (64)
32 6rxn_A Rubredoxin; electron tr 32.0 21 0.00073 23.7 1.7 28 144-171 2-38 (46)
33 2csh_A Zinc finger protein 297 30.9 33 0.0011 23.8 2.7 10 180-189 65-74 (110)
34 2yt5_A Metal-response element- 30.8 29 0.00099 23.4 2.3 26 144-169 4-29 (66)
35 1wfh_A Zinc finger (AN1-like) 30.5 41 0.0014 24.1 3.1 38 160-201 12-51 (64)
36 2v3b_B Rubredoxin 2, rubredoxi 30.1 30 0.001 23.6 2.2 12 144-155 1-12 (55)
37 1twf_L ABC10-alpha, DNA-direct 29.9 28 0.00096 25.0 2.2 29 160-188 25-53 (70)
38 1iym_A EL5; ring-H2 finger, ub 29.0 17 0.00059 22.8 0.8 15 206-220 5-19 (55)
39 1v87_A Deltex protein 2; ring- 29.0 13 0.00043 27.2 0.2 15 204-218 23-37 (114)
40 4esj_A Type-2 restriction enzy 28.6 25 0.00085 31.3 2.0 19 135-153 35-63 (257)
41 1qxf_A GR2, 30S ribosomal prot 28.0 27 0.00092 25.2 1.8 35 121-155 7-47 (66)
42 3asl_A E3 ubiquitin-protein li 27.8 95 0.0032 21.6 4.7 42 169-214 21-68 (70)
43 1wfp_A Zinc finger (AN1-like) 27.3 43 0.0015 24.6 2.8 38 161-202 23-62 (74)
44 2yw8_A RUN and FYVE domain-con 26.5 39 0.0013 24.1 2.5 11 135-145 20-30 (82)
45 3h0g_L DNA-directed RNA polyme 26.5 31 0.0011 24.5 1.9 11 161-171 36-46 (63)
46 2eps_A POZ-, at HOOK-, and zin 26.5 9.6 0.00033 23.7 -0.8 9 162-170 40-48 (54)
47 2kiz_A E3 ubiquitin-protein li 26.3 21 0.00072 23.5 0.9 15 204-218 12-26 (69)
48 1wfl_A Zinc finger protein 216 26.2 42 0.0014 24.7 2.5 32 169-201 28-61 (74)
49 1vfy_A Phosphatidylinositol-3- 26.1 41 0.0014 23.5 2.5 10 136-145 13-22 (73)
50 1ptq_A Protein kinase C delta 26.0 41 0.0014 21.3 2.2 10 161-170 26-35 (50)
51 1qyp_A RNA polymerase II; tran 25.5 40 0.0014 22.4 2.2 35 135-170 16-50 (57)
52 1bbo_A Human enhancer-binding 25.5 38 0.0013 20.4 2.0 9 162-170 28-36 (57)
53 2yqq_A Zinc finger HIT domain- 25.5 34 0.0012 23.7 1.9 16 137-153 15-30 (56)
54 1ajj_A LR5, low-density lipopr 25.2 57 0.002 19.9 2.7 31 179-210 5-37 (37)
55 2adr_A ADR1; transcription reg 24.6 41 0.0014 20.6 2.1 9 162-170 29-37 (60)
56 2ep4_A Ring finger protein 24; 24.4 28 0.00097 23.2 1.3 18 202-219 11-28 (74)
57 3j21_g 50S ribosomal protein L 24.2 50 0.0017 22.5 2.5 24 120-143 13-37 (51)
58 1v5n_A PDI-like hypothetical p 24.2 36 0.0012 24.9 1.9 9 179-187 60-68 (89)
59 1e8j_A Rubredoxin; iron-sulfur 24.1 47 0.0016 22.4 2.3 12 144-155 1-12 (52)
60 3a7q_B Low-density lipoprotein 23.8 73 0.0025 20.2 3.1 31 179-210 11-43 (44)
61 3u50_C Telomerase-associated p 23.7 29 0.00098 28.8 1.4 21 135-155 43-68 (172)
62 3t7l_A Zinc finger FYVE domain 23.5 49 0.0017 24.1 2.5 23 135-170 21-43 (90)
63 1pft_A TFIIB, PFTFIIBN; N-term 23.3 56 0.0019 21.0 2.6 7 136-142 7-13 (50)
64 2lv2_A Insulinoma-associated p 22.9 51 0.0018 23.4 2.5 9 162-170 55-63 (85)
65 2enn_A NPKC-theta, protein kin 22.6 52 0.0018 23.2 2.5 24 147-170 35-58 (77)
66 1f62_A Transcription factor WS 22.6 50 0.0017 21.1 2.2 42 168-214 2-49 (51)
67 3j20_W 30S ribosomal protein S 22.1 41 0.0014 24.0 1.8 34 121-154 15-54 (63)
68 3p8b_A DNA-directed RNA polyme 22.0 38 0.0013 25.3 1.6 22 121-143 23-44 (81)
69 2kvh_A Zinc finger and BTB dom 21.7 35 0.0012 17.3 1.1 8 163-170 3-10 (27)
70 1dx8_A Rubredoxin; electron tr 21.5 55 0.0019 23.4 2.4 13 143-155 4-16 (70)
71 1wff_A Riken cDNA 2810002D23 p 21.5 55 0.0019 24.5 2.5 32 169-201 28-62 (85)
72 1e4u_A Transcriptional repress 21.4 28 0.00097 24.6 0.8 11 206-216 11-21 (78)
73 3u5c_b RP61, YS20, 40S ribosom 21.4 60 0.0021 24.3 2.6 35 121-155 34-74 (82)
74 4gzn_C ZFP-57, zinc finger pro 21.2 42 0.0014 22.3 1.6 15 177-191 29-43 (60)
75 1x4u_A Zinc finger, FYVE domai 20.6 47 0.0016 23.7 1.9 11 135-145 15-25 (84)
76 3u5n_A E3 ubiquitin-protein li 20.0 92 0.0031 25.5 3.8 43 166-215 7-54 (207)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=6.7e-59 Score=383.97 Aligned_cols=134 Identities=42% Similarity=1.032 Sum_probs=128.5
Q ss_pred hhccCCCccCccccccCcceecCCCCCeecCcchhhhhccCcCcCCcCCCCCCCCCCCeeEcCCCCccccccccCCCCCC
Q 027127 63 LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGV 142 (228)
Q Consensus 63 ~~d~~~~~~GC~HY~R~ckIr~pCC~k~YpCR~CHDE~~~~~~~~~~~~H~ldR~~vk~VlCg~C~teQ~v~~~C~nCg~ 142 (228)
.+|++++++||+||+|+|+|+||||++|||||+||||++ +|+++|+.+++|+||+|+++|++++.|++||+
T Consensus 9 ~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~---------dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg~ 79 (143)
T 2dkt_A 9 VRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKLQHAQQTCEDCST 79 (143)
T ss_dssp CCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS---------SSCCCSSSCCCEEESSSCCEECSCSBCSSSCC
T ss_pred ccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc---------ccccchhccceeeecccCccccccCcCCCCCc
Confidence 347788899999999999999999999999999999974 89999999999999999999999999999999
Q ss_pred ccceEecCccccccCCCCCCeeecCCCCcceecCCCceeeccccCccccccccCCccccCCCCCC
Q 027127 143 CMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHH 207 (228)
Q Consensus 143 ~Fa~YfC~iCkl~Ddd~~K~~yHC~~CGICRvG~~~~ffHC~~C~~C~s~~l~~~HkCiE~~~~~ 207 (228)
.||+|||+|||||| ++|+||||++|||||+|+++|||||++||+|||++|+++|+|||++|++
T Consensus 80 ~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 80 LFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp BSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred cceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 99999999999997 4699999999999999999999999999999999999999999999976
No 2
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=93.31 E-value=0.036 Score=41.76 Aligned_cols=29 Identities=28% Similarity=0.765 Sum_probs=18.8
Q ss_pred eEcCCCCccccccccCCCCCCccceEecCccccc
Q 027127 122 VICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLF 155 (228)
Q Consensus 122 VlCg~C~teQ~v~~~C~nCg~~Fa~YfC~iCkl~ 155 (228)
.+|..|+.+..+ |..||+. .|||.-|+=.
T Consensus 32 afCPeCgq~Le~---lkACGA~--~yFC~~C~~L 60 (81)
T 2jrp_A 32 ALCPDCRQPLQV---LKACGAV--DYFCQNGHGL 60 (81)
T ss_dssp EECSSSCSCCCE---EEETTEE--EECCTTTTCC
T ss_pred ccCcchhhHHHH---HHhcCCc--CeeeccCCCE
Confidence 366666655443 5666655 8999998744
No 3
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=81.80 E-value=0.77 Score=35.86 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=7.5
Q ss_pred ceEecCccccc
Q 027127 145 GEYFCESCKLF 155 (228)
Q Consensus 145 a~YfC~iCkl~ 155 (228)
+.|||..|+=.
T Consensus 80 vdYFC~~chgL 90 (101)
T 2jne_A 80 VDYFCQHGHGL 90 (101)
T ss_dssp EEEEETTTTEE
T ss_pred cchhhccCCce
Confidence 56888877633
No 4
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.28 E-value=2.2 Score=32.10 Aligned_cols=30 Identities=23% Similarity=0.760 Sum_probs=16.8
Q ss_pred CeeecCCC---CcceecC-CCceeeccccCcccc
Q 027127 162 KQYHCDGC---GICRIGG-CDNFFHCNKCRCCYS 191 (228)
Q Consensus 162 ~~yHC~~C---GICRvG~-~~~ffHC~~C~~C~s 191 (228)
..+.|+.| .+|+.++ .+....|+.|+.-|-
T Consensus 47 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH 80 (111)
T 2ysm_A 47 AGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYH 80 (111)
T ss_dssp TTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEE
T ss_pred cCccCCcCCcccccCccCCCCCeeECCCCCcHHh
Confidence 34555544 4555554 245788888876433
No 5
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=62.18 E-value=2.6 Score=34.55 Aligned_cols=32 Identities=28% Similarity=0.767 Sum_probs=22.5
Q ss_pred ceEecCccccccCCCCCCeeecCCCCcceecC
Q 027127 145 GEYFCESCKLFDDDTSKKQYHCDGCGICRIGG 176 (228)
Q Consensus 145 a~YfC~iCkl~Ddd~~K~~yHC~~CGICRvG~ 176 (228)
.-|.|+.|.+=.-...++-|||+.||+|..-.
T Consensus 97 ~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~ 128 (143)
T 2dkt_A 97 RQYHCESCGICRIGPKEDFFHCLKCNLCLTTN 128 (143)
T ss_dssp SEEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred ceecCCCCCceeccCCcCcEECCcCCeeeccc
Confidence 34666666555444568999999999996543
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=55.93 E-value=4.4 Score=25.64 Aligned_cols=17 Identities=35% Similarity=0.706 Sum_probs=13.1
Q ss_pred CCCCCCccccCccccCh
Q 027127 204 AMHHDCPVCCEVIHYNF 220 (228)
Q Consensus 204 ~~~~nCPIC~E~lFtS~ 220 (228)
+....||||++.+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~ 19 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSR 19 (55)
T ss_dssp SCCCSCTTTCCCCCTTT
T ss_pred CCCCcCcccChhhcCCC
Confidence 45678999999987653
No 7
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.91 E-value=5.5 Score=26.86 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=6.6
Q ss_pred ccccCCCCCC
Q 027127 133 VQQVCVNCGV 142 (228)
Q Consensus 133 v~~~C~nCg~ 142 (228)
.-..||.||.
T Consensus 18 ~~k~CP~CG~ 27 (50)
T 3j20_Y 18 KNKFCPRCGP 27 (50)
T ss_dssp SSEECSSSCS
T ss_pred ecccCCCCCC
Confidence 3456788876
No 8
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=55.78 E-value=8.7 Score=28.69 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=15.8
Q ss_pred eeEcCCCCccccccccCCCCCCccce
Q 027127 121 QVICSLCGTEQKVQQVCVNCGVCMGE 146 (228)
Q Consensus 121 ~VlCg~C~teQ~v~~~C~nCg~~Fa~ 146 (228)
...|..|+..-+....||.||.++..
T Consensus 18 ~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 18 TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred ceECccccccCCCcccCcchhhHHHH
Confidence 44577776654443377777776655
No 9
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=52.75 E-value=5 Score=31.03 Aligned_cols=14 Identities=21% Similarity=0.769 Sum_probs=8.3
Q ss_pred CceeeccccCcccc
Q 027127 178 DNFFHCNKCRCCYS 191 (228)
Q Consensus 178 ~~ffHC~~C~~C~s 191 (228)
+.-|-|..|+.-.+
T Consensus 131 ~~~~~C~~C~~~f~ 144 (190)
T 2i13_A 131 EKPYKCPECGKSFS 144 (190)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 34566776666544
No 10
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=49.84 E-value=8.8 Score=30.91 Aligned_cols=24 Identities=29% Similarity=0.865 Sum_probs=17.4
Q ss_pred ccccccCCC--CCC------ccceEecCcccc
Q 027127 131 QKVQQVCVN--CGV------CMGEYFCESCKL 154 (228)
Q Consensus 131 Q~v~~~C~n--Cg~------~Fa~YfC~iCkl 154 (228)
+.....||+ ||. -|.|+||++|.+
T Consensus 115 ~~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 115 TKLRRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp ECCSCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred EECcCcCCCccCCCceEecccCCCcccCCCce
Confidence 333568999 987 356888999865
No 11
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=48.77 E-value=9.3 Score=29.76 Aligned_cols=54 Identities=22% Similarity=0.538 Sum_probs=33.0
Q ss_pred cccCCCCCCcc---ceE-ecCccccccCCCCCCeeecCCCC----cceecCCCceeeccccCccccc
Q 027127 134 QQVCVNCGVCM---GEY-FCESCKLFDDDTSKKQYHCDGCG----ICRIGGCDNFFHCNKCRCCYSM 192 (228)
Q Consensus 134 ~~~C~nCg~~F---a~Y-fC~iCkl~Ddd~~K~~yHC~~CG----ICRvG~~~~ffHC~~C~~C~s~ 192 (228)
+..||.|+..+ +.| +|+.|.-- -+.+..||+|| +...=|..||| |..|+-=+|+
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~~C~~~----f~~~a~CPdC~q~LevLkACGAvdYF-C~~chgLiSK 93 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCRSCGEF----IEMKALCPDCHQPLQVLKACGAVDYF-CQHGHGLISK 93 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEETTTCCE----EEEEEECTTTCSBCEEEEETTEEEEE-ETTTTEEECT
T ss_pred cccCccCCCcceecCCEEECccccch----hhccccCcchhhHHHHHHHhcCcchh-hccCCceeec
Confidence 36899999876 333 48888531 24567788887 33333446676 5555544443
No 12
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=48.31 E-value=16 Score=24.62 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=8.0
Q ss_pred CceeeccccCcccc
Q 027127 178 DNFFHCNKCRCCYS 191 (228)
Q Consensus 178 ~~ffHC~~C~~C~s 191 (228)
+.-|.|..|+.-+.
T Consensus 62 ~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 62 ERPFKCQICPYASR 75 (96)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCCccC
Confidence 34566766665443
No 13
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=46.00 E-value=15 Score=25.12 Aligned_cols=8 Identities=38% Similarity=1.161 Sum_probs=3.8
Q ss_pred ccCCCCCC
Q 027127 135 QVCVNCGV 142 (228)
Q Consensus 135 ~~C~nCg~ 142 (228)
..||.||.
T Consensus 19 ~fCPkCG~ 26 (55)
T 2k4x_A 19 RFCPRCGP 26 (55)
T ss_dssp CCCTTTTT
T ss_pred ccCcCCCC
Confidence 34555544
No 14
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=42.97 E-value=35 Score=23.94 Aligned_cols=26 Identities=19% Similarity=0.551 Sum_probs=21.3
Q ss_pred CCCeeEcCCCCccccc-cccCCCCCCc
Q 027127 118 EVNQVICSLCGTEQKV-QQVCVNCGVC 143 (228)
Q Consensus 118 ~vk~VlCg~C~teQ~v-~~~C~nCg~~ 143 (228)
....+||+.|+...++ +..|..||..
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HhchhhhccccCcCCcccccccCCCCC
Confidence 3468999999999888 5689988854
No 15
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=42.38 E-value=8.3 Score=29.42 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=4.7
Q ss_pred eeEcCCCCcc
Q 027127 121 QVICSLCGTE 130 (228)
Q Consensus 121 ~VlCg~C~te 130 (228)
...|..|+.+
T Consensus 73 ~~~C~~CG~~ 82 (119)
T 2kdx_A 73 ELECKDCSHV 82 (119)
T ss_dssp EEECSSSSCE
T ss_pred eEEcCCCCCE
Confidence 4445555443
No 16
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=41.81 E-value=6.4 Score=30.59 Aligned_cols=55 Identities=27% Similarity=0.699 Sum_probs=37.7
Q ss_pred CccceEecCccccccCCCCCCeeecCCCCcceecCCCceeeccccCccccccccCCccccCCCCCCCCccccCccccChh
Q 027127 142 VCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEVIHYNFP 221 (228)
Q Consensus 142 ~~Fa~YfC~iCkl~Ddd~~K~~yHC~~CGICRvG~~~~ffHC~~C~~C~s~~l~~~HkCiE~~~~~nCPIC~E~lFtS~~ 221 (228)
.-+|+|+|..|-|.++. --.| .|-+=| --|+++-|..+ ..||||...|=|..+
T Consensus 24 s~~G~~nCKsCWf~~k~----LV~C-----------~dHYLC---l~CLtlmL~~S---------drCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG----LVEC-----------NNHYLC---LNCLTLLLSVS---------NRCPICKMPLPTKLR 76 (99)
T ss_dssp CCSCCCCCCSSCSCCSS----EEEC-----------SSCEEE---HHHHHHTCSSS---------SEETTTTEECCCCSC
T ss_pred cccCcccChhhccccCC----eeee-----------cchhhH---HHHHHHHHhhc---------cCCcccCCcCCccee
Confidence 45899999999988653 3333 234444 45788777544 568999999988765
Q ss_pred hh
Q 027127 222 VA 223 (228)
Q Consensus 222 ~~ 223 (228)
+.
T Consensus 77 ~~ 78 (99)
T 2ko5_A 77 PS 78 (99)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 17
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=41.77 E-value=10 Score=28.17 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=22.9
Q ss_pred cccccCCCCCCccceEecCccccccCCCCCCeeecCCCCcceecC
Q 027127 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGG 176 (228)
Q Consensus 132 ~v~~~C~nCg~~Fa~YfC~iCkl~Ddd~~K~~yHC~~CGICRvG~ 176 (228)
...-.|++||...- | ++...+++|+.||.=-.||
T Consensus 25 ~~~y~Cp~CG~~~v---------~--r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 25 NEDHACPNCGEDRV---------D--RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp HSCEECSSSCCEEE---------E--EEETTEEEETTTCCEEECC
T ss_pred cccCcCCCCCCcce---------e--ccCCCeEECCCCCCEecCC
Confidence 33446777776431 2 3456799999999887876
No 18
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=40.47 E-value=19 Score=23.17 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=3.9
Q ss_pred eeeccccCc
Q 027127 180 FFHCNKCRC 188 (228)
Q Consensus 180 ffHC~~C~~ 188 (228)
-|-|..||.
T Consensus 39 ~~~C~~C~k 47 (62)
T 1vd4_A 39 TFRCTFCHT 47 (62)
T ss_dssp EEBCSSSCC
T ss_pred CEECCCCCC
Confidence 344444443
No 19
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=38.67 E-value=16 Score=25.01 Aligned_cols=27 Identities=33% Similarity=0.751 Sum_probs=11.8
Q ss_pred ceEecCcc-ccccCCC--CCCeeecCCCCc
Q 027127 145 GEYFCESC-KLFDDDT--SKKQYHCDGCGI 171 (228)
Q Consensus 145 a~YfC~iC-kl~Ddd~--~K~~yHC~~CGI 171 (228)
+.|-|..| +-|++++ --+--+|+.||+
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCc
Confidence 34445555 2333332 124556777775
No 20
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=37.64 E-value=21 Score=24.60 Aligned_cols=10 Identities=40% Similarity=1.268 Sum_probs=5.4
Q ss_pred CeeEcCCCCc
Q 027127 120 NQVICSLCGT 129 (228)
Q Consensus 120 k~VlCg~C~t 129 (228)
+...|..|+.
T Consensus 16 ~~~~C~~C~~ 25 (106)
T 2ee8_A 16 KEFICKFCGR 25 (106)
T ss_dssp CCCBCSSSCC
T ss_pred cCeECCCCCC
Confidence 4455666654
No 21
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=37.25 E-value=20 Score=25.99 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=19.0
Q ss_pred CCeeEcCCCCccccccccCCCCCCc
Q 027127 119 VNQVICSLCGTEQKVQQVCVNCGVC 143 (228)
Q Consensus 119 vk~VlCg~C~teQ~v~~~C~nCg~~ 143 (228)
..+..|..|...+ ..+.|||||..
T Consensus 9 ~~~~AC~~C~~~~-~~~~CPnC~s~ 32 (69)
T 1ryq_A 9 SSEKACRHCHYIT-SEDRCPVCGSR 32 (69)
T ss_dssp --CEEETTTCBEE-SSSSCTTTCCC
T ss_pred chhhhHHhCCccc-cCCcCCCccCC
Confidence 4688999999988 67899999853
No 22
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=36.82 E-value=17 Score=26.18 Aligned_cols=7 Identities=43% Similarity=1.360 Sum_probs=3.8
Q ss_pred ecCCCCc
Q 027127 165 HCDGCGI 171 (228)
Q Consensus 165 HC~~CGI 171 (228)
+|+.||-
T Consensus 47 rCp~CG~ 53 (70)
T 1twf_L 47 RCKDCGH 53 (70)
T ss_dssp CCSSSCC
T ss_pred cCCCCCc
Confidence 5555553
No 23
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.30 E-value=29 Score=31.08 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=21.5
Q ss_pred CCeeEcCCCCccccc-cccCCCCCCcc
Q 027127 119 VNQVICSLCGTEQKV-QQVCVNCGVCM 144 (228)
Q Consensus 119 vk~VlCg~C~teQ~v-~~~C~nCg~~F 144 (228)
.+-+.|+.|+++=.+ -..|++||..-
T Consensus 206 ~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 206 LRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp EEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred cEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 358999999999776 46899999873
No 24
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=36.05 E-value=5.9 Score=25.24 Aligned_cols=9 Identities=44% Similarity=0.752 Sum_probs=4.4
Q ss_pred CeeecCCCC
Q 027127 162 KQYHCDGCG 170 (228)
Q Consensus 162 ~~yHC~~CG 170 (228)
.+|.|+.||
T Consensus 39 ~~~~C~~C~ 47 (66)
T 2drp_A 39 KVYPCPFCF 47 (66)
T ss_dssp CCEECTTTC
T ss_pred cCeECCCCC
Confidence 445555444
No 25
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=35.72 E-value=15 Score=25.67 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=14.9
Q ss_pred EcCCCCccccccccCCCCCC
Q 027127 123 ICSLCGTEQKVQQVCVNCGV 142 (228)
Q Consensus 123 lCg~C~teQ~v~~~C~nCg~ 142 (228)
-|+.|...++.. .|+|||.
T Consensus 3 AC~~C~~v~~~~-~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDE-ICPICHS 21 (59)
T ss_dssp EETTTCBEESSS-BCTTTCC
T ss_pred ccccCCcccCCC-CCCCCCC
Confidence 488888887665 6999986
No 26
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.61 E-value=24 Score=24.63 Aligned_cols=14 Identities=14% Similarity=0.598 Sum_probs=7.9
Q ss_pred CceeeccccCcccc
Q 027127 178 DNFFHCNKCRCCYS 191 (228)
Q Consensus 178 ~~ffHC~~C~~C~s 191 (228)
+.-|.|..|+.-+.
T Consensus 92 ~~~~~C~~C~~~f~ 105 (124)
T 2dlq_A 92 EMPYKCSSCSQQFM 105 (124)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCccCCCccchhC
Confidence 44566666665443
No 27
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=34.19 E-value=24 Score=21.11 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=4.8
Q ss_pred CeeecCCCC
Q 027127 162 KQYHCDGCG 170 (228)
Q Consensus 162 ~~yHC~~CG 170 (228)
.+|.|+.||
T Consensus 39 k~~~C~~C~ 47 (48)
T 2epr_A 39 KPYSSGPSS 47 (48)
T ss_dssp CCCCSCCCC
T ss_pred CCccCCCCC
Confidence 455555554
No 28
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=33.58 E-value=53 Score=23.62 Aligned_cols=33 Identities=27% Similarity=0.663 Sum_probs=15.3
Q ss_pred CceeeccccCc-----cccccccCCccccCCCCCCCCccccC
Q 027127 178 DNFFHCNKCRC-----CYSMLLKNSHPCVEGAMHHDCPVCCE 214 (228)
Q Consensus 178 ~~ffHC~~C~~-----C~s~~l~~~HkCiE~~~~~nCPIC~E 214 (228)
+....|+.|.. |+...|.. +.....--||.|..
T Consensus 39 ~~ll~CD~C~~~yH~~Cl~PpL~~----~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 39 DKQLMCDECDMAFHIYCLDPPLSS----VPSEDEWYCPECRN 76 (77)
T ss_dssp GGEEECTTTCCEEETTTSSSCCSS----CCSSSCCCCTTTC-
T ss_pred cceeEeCCCCCccCcccCCCcccC----CCCCCceECcCccc
Confidence 34555555554 55544432 22222256777754
No 29
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=33.05 E-value=19 Score=25.41 Aligned_cols=24 Identities=21% Similarity=0.521 Sum_probs=15.6
Q ss_pred CeeEcCCCCcc--ccccccCCCCCCc
Q 027127 120 NQVICSLCGTE--QKVQQVCVNCGVC 143 (228)
Q Consensus 120 k~VlCg~C~te--Q~v~~~C~nCg~~ 143 (228)
++.+|..|... ++..-.||.|+.+
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~r 35 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAP 35 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCE
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCC
Confidence 35788888763 4445567777754
No 30
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=32.91 E-value=18 Score=30.51 Aligned_cols=22 Identities=32% Similarity=0.812 Sum_probs=16.6
Q ss_pred cccCCCCCCc------cceEecCccccc
Q 027127 134 QQVCVNCGVC------MGEYFCESCKLF 155 (228)
Q Consensus 134 ~~~C~nCg~~------Fa~YfC~iCkl~ 155 (228)
...|++||.. +.||||++|.+.
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~~CGkC~~t 140 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRHYCGKCHLT 140 (189)
T ss_dssp SEECSTTCSSCEEEECSSCEEETTTCCC
T ss_pred cccCCccCCCccccCccCCCccCCceeE
Confidence 3679999854 478899999653
No 31
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.67 E-value=35 Score=24.38 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=22.3
Q ss_pred CCcceecCCCceeeccccCc--cccccccCCcccc
Q 027127 169 CGICRIGGCDNFFHCNKCRC--CYSMLLKNSHPCV 201 (228)
Q Consensus 169 CGICRvG~~~~ffHC~~C~~--C~s~~l~~~HkCi 201 (228)
|..||...+---|.| +||. |..-.+.+.|.|.
T Consensus 18 C~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~ 51 (64)
T 1wg2_A 18 CFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECS 51 (64)
T ss_dssp CTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCC
T ss_pred ChhhCCcccccCeEe-ecCCEecccCCCccccCCC
Confidence 345665433235899 8985 8888888899886
No 32
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=32.01 E-value=21 Score=23.72 Aligned_cols=28 Identities=32% Similarity=0.936 Sum_probs=16.1
Q ss_pred cceEecCcccc-ccC---CC-----CCCeeecCCCCc
Q 027127 144 MGEYFCESCKL-FDD---DT-----SKKQYHCDGCGI 171 (228)
Q Consensus 144 Fa~YfC~iCkl-~Dd---d~-----~K~~yHC~~CGI 171 (228)
|.+|-|.+|.+ ||. ++ --.-|.|+.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 67788888865 442 21 112367777763
No 33
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.89 E-value=33 Score=23.75 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=5.0
Q ss_pred eeeccccCcc
Q 027127 180 FFHCNKCRCC 189 (228)
Q Consensus 180 ffHC~~C~~C 189 (228)
-|-|..|+.-
T Consensus 65 ~~~C~~C~~~ 74 (110)
T 2csh_A 65 PYECNICAKR 74 (110)
T ss_dssp CEECSSSCCE
T ss_pred CeeCCCCcch
Confidence 4555555543
No 34
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=30.79 E-value=29 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=12.5
Q ss_pred cceEecCccccccCCCCCCeeecCCC
Q 027127 144 MGEYFCESCKLFDDDTSKKQYHCDGC 169 (228)
Q Consensus 144 Fa~YfC~iCkl~Ddd~~K~~yHC~~C 169 (228)
-+..+|.+|..-+++....+.-|+.|
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C 29 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKC 29 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCC
Confidence 34445566654433333445555555
No 35
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.55 E-value=41 Score=24.08 Aligned_cols=38 Identities=26% Similarity=0.602 Sum_probs=24.7
Q ss_pred CCCeeecCCCCcceecCCCceeeccccCc--cccccccCCcccc
Q 027127 160 SKKQYHCDGCGICRIGGCDNFFHCNKCRC--CYSMLLKNSHPCV 201 (228)
Q Consensus 160 ~K~~yHC~~CGICRvG~~~~ffHC~~C~~--C~s~~l~~~HkCi 201 (228)
.+.+-.|. .||...+---|.| +||. |..-.+.+.|.|.
T Consensus 12 k~~~~rC~---~C~kkvgl~~f~C-rCg~~FC~~HRy~e~H~C~ 51 (64)
T 1wfh_A 12 PQRPNRCT---VCRKRVGLTGFMC-RCGTTFCGSHRYPEVHGCT 51 (64)
T ss_dssp CSSCCCCT---TTCCCCCTTCEEC-SSSCEECTTTCSTTTTTCC
T ss_pred CCcCCcCh---hhCCccCccCEEe-ecCCEeccccCCcccCCCC
Confidence 33444554 5665432235889 6885 8888888888886
No 36
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=30.12 E-value=30 Score=23.64 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=8.2
Q ss_pred cceEecCccccc
Q 027127 144 MGEYFCESCKLF 155 (228)
Q Consensus 144 Fa~YfC~iCkl~ 155 (228)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (55)
T 2v3b_B 1 MRKWQCVVCGFI 12 (55)
T ss_dssp CCEEEETTTCCE
T ss_pred CCcEEeCCCCeE
Confidence 467888888543
No 37
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=29.88 E-value=28 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=15.8
Q ss_pred CCCeeecCCCCcceecCCCceeeccccCc
Q 027127 160 SKKQYHCDGCGICRIGGCDNFFHCNKCRC 188 (228)
Q Consensus 160 ~K~~yHC~~CGICRvG~~~~ffHC~~C~~ 188 (228)
.+-.|.|.+||.=---...|-.+|..||.
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCc
Confidence 45667777776441111234456777765
No 38
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=29.01 E-value=17 Score=22.79 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=11.4
Q ss_pred CCCCccccCccccCh
Q 027127 206 HHDCPVCCEVIHYNF 220 (228)
Q Consensus 206 ~~nCPIC~E~lFtS~ 220 (228)
...||||++.+.++.
T Consensus 5 ~~~C~IC~~~~~~~~ 19 (55)
T 1iym_A 5 GVECAVCLAELEDGE 19 (55)
T ss_dssp SCCCTTTCCCCCTTS
T ss_pred CCcCccCCccccCCC
Confidence 357999999886643
No 39
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=28.96 E-value=13 Score=27.18 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=11.7
Q ss_pred CCCCCCccccCcccc
Q 027127 204 AMHHDCPVCCEVIHY 218 (228)
Q Consensus 204 ~~~~nCPIC~E~lFt 218 (228)
..+..||||++.|..
T Consensus 23 ~~~~~C~ICl~~~~~ 37 (114)
T 1v87_A 23 APEEDCIICMEKLAV 37 (114)
T ss_dssp CCSCEETTTTEETTS
T ss_pred CCCCcCccCChhhcC
Confidence 345689999999855
No 40
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=28.63 E-value=25 Score=31.33 Aligned_cols=19 Identities=32% Similarity=1.125 Sum_probs=12.3
Q ss_pred ccCCCCCC----------ccceEecCccc
Q 027127 135 QVCVNCGV----------CMGEYFCESCK 153 (228)
Q Consensus 135 ~~C~nCg~----------~Fa~YfC~iCk 153 (228)
..||+||. +.|..||..|+
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCS 63 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTC
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcc
Confidence 46888887 34556666664
No 41
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=27.98 E-value=27 Score=25.23 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=23.1
Q ss_pred eeEcCCCCccccc---c---ccCCCCCCccceEecCccccc
Q 027127 121 QVICSLCGTEQKV---Q---QVCVNCGVCMGEYFCESCKLF 155 (228)
Q Consensus 121 ~VlCg~C~teQ~v---~---~~C~nCg~~Fa~YfC~iCkl~ 155 (228)
.|.|.-|..+|.+ + ..|..||..+++-.=++-+|-
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGKA~l~ 47 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIK 47 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSSCEEC
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEEeecCCcceeee
Confidence 5778888877766 1 367788777776655555444
No 42
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=27.82 E-value=95 Score=21.62 Aligned_cols=42 Identities=26% Similarity=0.630 Sum_probs=22.5
Q ss_pred CCcceecC-CCceeeccccCc-----cccccccCCccccCCCCCCCCccccC
Q 027127 169 CGICRIGG-CDNFFHCNKCRC-----CYSMLLKNSHPCVEGAMHHDCPVCCE 214 (228)
Q Consensus 169 CGICRvG~-~~~ffHC~~C~~-----C~s~~l~~~HkCiE~~~~~nCPIC~E 214 (228)
|.+|+.+. +.+..-|+.|.. |+...|.. +.....--||.|..
T Consensus 21 C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~----~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSS----VPSEDEWYCPECRN 68 (70)
T ss_dssp BTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSS----CCSSSCCCCTTTSC
T ss_pred CcCCCCcCCCCCEEEcCCCCCceecccCCCCcCC----CCCCCCcCCcCccC
Confidence 34555432 356777777765 55533432 22222567888864
No 43
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.28 E-value=43 Score=24.60 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=24.6
Q ss_pred CCeeecCCCCcceecCCCceeeccccC--ccccccccCCccccC
Q 027127 161 KKQYHCDGCGICRIGGCDNFFHCNKCR--CCYSMLLKNSHPCVE 202 (228)
Q Consensus 161 K~~yHC~~CGICRvG~~~~ffHC~~C~--~C~s~~l~~~HkCiE 202 (228)
+.+..|. .||..-+---|.| +|| .|..-.+.+.|.|.-
T Consensus 23 ~~~~RC~---~C~kkvgL~~f~C-rCg~~FCs~HRy~e~H~C~f 62 (74)
T 1wfp_A 23 STATRCL---SCNKKVGVTGFKC-RCGSTFCGTHRYPESHECQF 62 (74)
T ss_dssp CCCCBCS---SSCCBCTTTCEEC-TTSCEECTTTCSTTTSCCCS
T ss_pred ccCccch---hhcCcccccceEe-ccCCEeccccCCCcCCCCcC
Confidence 3444444 5554432235888 788 488888889999863
No 44
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.52 E-value=39 Score=24.13 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=6.9
Q ss_pred ccCCCCCCccc
Q 027127 135 QVCVNCGVCMG 145 (228)
Q Consensus 135 ~~C~nCg~~Fa 145 (228)
..|..|+..|+
T Consensus 20 ~~C~~C~~~Fs 30 (82)
T 2yw8_A 20 THCRQCEKEFS 30 (82)
T ss_dssp CBCTTTCCBCB
T ss_pred CcccCcCCccc
Confidence 35666776664
No 45
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.51 E-value=31 Score=24.47 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=6.8
Q ss_pred CCeeecCCCCc
Q 027127 161 KKQYHCDGCGI 171 (228)
Q Consensus 161 K~~yHC~~CGI 171 (228)
..+..|+.||.
T Consensus 36 ~~~iRC~~CG~ 46 (63)
T 3h0g_L 36 KEVIRCRECGH 46 (63)
T ss_dssp SSCCCCSSSCC
T ss_pred CCceECCCCCc
Confidence 35566777763
No 46
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.48 E-value=9.6 Score=23.73 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=3.9
Q ss_pred CeeecCCCC
Q 027127 162 KQYHCDGCG 170 (228)
Q Consensus 162 ~~yHC~~CG 170 (228)
.+|.|+.||
T Consensus 40 k~~~C~~C~ 48 (54)
T 2eps_A 40 RPHKCQVWV 48 (54)
T ss_dssp CCCCSSSSC
T ss_pred CCccCCCCC
Confidence 344444443
No 47
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=26.30 E-value=21 Score=23.53 Aligned_cols=15 Identities=13% Similarity=0.642 Sum_probs=9.6
Q ss_pred CCCCCCccccCcccc
Q 027127 204 AMHHDCPVCCEVIHY 218 (228)
Q Consensus 204 ~~~~nCPIC~E~lFt 218 (228)
.....||||++.+-.
T Consensus 12 ~~~~~C~IC~~~~~~ 26 (69)
T 2kiz_A 12 DTEEKCTICLSILEE 26 (69)
T ss_dssp TCCCSBTTTTBCCCS
T ss_pred CCCCCCeeCCccccC
Confidence 445668888776644
No 48
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.22 E-value=42 Score=24.68 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=19.8
Q ss_pred CCcceecCCCceeeccccCc--cccccccCCcccc
Q 027127 169 CGICRIGGCDNFFHCNKCRC--CYSMLLKNSHPCV 201 (228)
Q Consensus 169 CGICRvG~~~~ffHC~~C~~--C~s~~l~~~HkCi 201 (228)
|..||..-+---|.|. ||. |..-.+.+.|.|.
T Consensus 28 C~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~ 61 (74)
T 1wfl_A 28 CFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCP 61 (74)
T ss_dssp CSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCC
T ss_pred ChhhCCcccccCeecC-CCCEechhcCCCccCCCc
Confidence 3345543222247777 764 7777778888886
No 49
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=26.06 E-value=41 Score=23.48 Aligned_cols=10 Identities=20% Similarity=0.660 Sum_probs=6.4
Q ss_pred cCCCCCCccc
Q 027127 136 VCVNCGVCMG 145 (228)
Q Consensus 136 ~C~nCg~~Fa 145 (228)
.|..|+..|+
T Consensus 13 ~C~~C~~~F~ 22 (73)
T 1vfy_A 13 ACMICSKKFS 22 (73)
T ss_dssp BCTTTCCBCB
T ss_pred cccCCCCccC
Confidence 5666666665
No 50
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=25.98 E-value=41 Score=21.27 Aligned_cols=10 Identities=40% Similarity=1.222 Sum_probs=5.4
Q ss_pred CCeeecCCCC
Q 027127 161 KKQYHCDGCG 170 (228)
Q Consensus 161 K~~yHC~~CG 170 (228)
|+-|.|..||
T Consensus 26 ~qg~~C~~C~ 35 (50)
T 1ptq_A 26 KQGLKCEDCG 35 (50)
T ss_dssp SCEEEETTTC
T ss_pred CccCEeCCCC
Confidence 4555555554
No 51
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=25.51 E-value=40 Score=22.44 Aligned_cols=35 Identities=26% Similarity=0.604 Sum_probs=17.5
Q ss_pred ccCCCCCCccceEecCccccccCCCCCCeeecCCCC
Q 027127 135 QVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCG 170 (228)
Q Consensus 135 ~~C~nCg~~Fa~YfC~iCkl~Ddd~~K~~yHC~~CG 170 (228)
..|+.||..-+.|+=..=+ =.|++....|.|..||
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~r-sadep~T~fy~C~~Cg 50 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTR-AGDEPSTIFYKCTKCG 50 (57)
T ss_dssp CCCTTTCCSEEEEEEECCS-SSSCSSEEEEEESSSC
T ss_pred eECCCCCCCEEEEEEeecc-cCCCCCcEEEEcCCCC
Confidence 3577777765555510000 0233445566666665
No 52
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=25.49 E-value=38 Score=20.44 Aligned_cols=9 Identities=44% Similarity=1.320 Sum_probs=4.5
Q ss_pred CeeecCCCC
Q 027127 162 KQYHCDGCG 170 (228)
Q Consensus 162 ~~yHC~~CG 170 (228)
.+|.|+.||
T Consensus 28 ~~~~C~~C~ 36 (57)
T 1bbo_A 28 RPYHCTYCN 36 (57)
T ss_dssp CCEECSSSS
T ss_pred CCccCCCCC
Confidence 445555554
No 53
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.45 E-value=34 Score=23.70 Aligned_cols=16 Identities=38% Similarity=0.966 Sum_probs=8.2
Q ss_pred CCCCCCccceEecCccc
Q 027127 137 CVNCGVCMGEYFCESCK 153 (228)
Q Consensus 137 C~nCg~~Fa~YfC~iCk 153 (228)
|.-|+. .++|.|+.|.
T Consensus 15 C~vC~~-~~kY~CPrC~ 30 (56)
T 2yqq_A 15 CVICLE-KPKYRCPACR 30 (56)
T ss_dssp CTTTCS-CCSEECTTTC
T ss_pred cCcCcC-CCeeeCCCCC
Confidence 444555 5555555554
No 54
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=25.18 E-value=57 Score=19.88 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=19.0
Q ss_pred ceeeccccCcccccccc--CCccccCCCCCCCCc
Q 027127 179 NFFHCNKCRCCYSMLLK--NSHPCVEGAMHHDCP 210 (228)
Q Consensus 179 ~ffHC~~C~~C~s~~l~--~~HkCiE~~~~~nCP 210 (228)
+.|.|.. |.|++..+. +.--|..++-+.+||
T Consensus 5 ~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 5 FEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp TCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CceEcCC-CCeechhhccCCCCCCCCCccccCCC
Confidence 4677775 778877654 444455555555554
No 55
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=24.63 E-value=41 Score=20.60 Aligned_cols=9 Identities=44% Similarity=1.066 Sum_probs=4.5
Q ss_pred CeeecCCCC
Q 027127 162 KQYHCDGCG 170 (228)
Q Consensus 162 ~~yHC~~CG 170 (228)
.+|.|+.||
T Consensus 29 ~~~~C~~C~ 37 (60)
T 2adr_A 29 KPYPCGLCN 37 (60)
T ss_dssp CSEECTTTC
T ss_pred CCccCCCCC
Confidence 445555554
No 56
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.40 E-value=28 Score=23.21 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=11.3
Q ss_pred CCCCCCCCccccCccccC
Q 027127 202 EGAMHHDCPVCCEVIHYN 219 (228)
Q Consensus 202 E~~~~~nCPIC~E~lFtS 219 (228)
+......||||++.+-..
T Consensus 11 ~~~~~~~C~IC~~~~~~~ 28 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPR 28 (74)
T ss_dssp CCCCSCBCSSSCCBCCSS
T ss_pred cCCCCCCCcCCCcccCCC
Confidence 344456788888776443
No 57
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.23 E-value=50 Score=22.46 Aligned_cols=24 Identities=25% Similarity=0.707 Sum_probs=17.4
Q ss_pred CeeEcCCCCcccccc-ccCCCCCCc
Q 027127 120 NQVICSLCGTEQKVQ-QVCVNCGVC 143 (228)
Q Consensus 120 k~VlCg~C~teQ~v~-~~C~nCg~~ 143 (228)
...+|..|+...++. ..|..||..
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 477888888876663 467777765
No 58
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=24.22 E-value=36 Score=24.95 Aligned_cols=9 Identities=33% Similarity=1.139 Sum_probs=4.6
Q ss_pred ceeeccccC
Q 027127 179 NFFHCNKCR 187 (228)
Q Consensus 179 ~ffHC~~C~ 187 (228)
-||+|..|+
T Consensus 60 ~~Y~C~~C~ 68 (89)
T 1v5n_A 60 WSYHCDECD 68 (89)
T ss_dssp CEEECTTTC
T ss_pred cEEEcCCCC
Confidence 355555554
No 59
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=24.15 E-value=47 Score=22.38 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=8.3
Q ss_pred cceEecCccccc
Q 027127 144 MGEYFCESCKLF 155 (228)
Q Consensus 144 Fa~YfC~iCkl~ 155 (228)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (52)
T 1e8j_A 1 MDIYVCTVCGYE 12 (52)
T ss_dssp CCCEECSSSCCC
T ss_pred CCcEEeCCCCeE
Confidence 467888888543
No 60
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=23.79 E-value=73 Score=20.19 Aligned_cols=31 Identities=23% Similarity=0.759 Sum_probs=22.0
Q ss_pred ceeeccccCcccccccc--CCccccCCCCCCCCc
Q 027127 179 NFFHCNKCRCCYSMLLK--NSHPCVEGAMHHDCP 210 (228)
Q Consensus 179 ~ffHC~~C~~C~s~~l~--~~HkCiE~~~~~nCP 210 (228)
+.|.|.. +.|++..+. +.--|...+-+.+|+
T Consensus 11 ~~f~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 11 DQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp TEEECTT-SCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CceEcCC-CCEeChhhccCCCCCCCCCccccCCC
Confidence 5788888 889888765 555666667677775
No 61
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=23.66 E-value=29 Score=28.76 Aligned_cols=21 Identities=38% Similarity=0.925 Sum_probs=13.7
Q ss_pred ccCCCCCCcc-----ceEecCccccc
Q 027127 135 QVCVNCGVCM-----GEYFCESCKLF 155 (228)
Q Consensus 135 ~~C~nCg~~F-----a~YfC~iCkl~ 155 (228)
..|++|+..+ ++|+|++|+-.
T Consensus 43 ~ACp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp EECTTSCCCEEEETTTEEEETTTTEE
T ss_pred hhchhhCCEeeeCCCCeEECCCCCCC
Confidence 5688887665 45666666655
No 62
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.48 E-value=49 Score=24.12 Aligned_cols=23 Identities=39% Similarity=0.969 Sum_probs=14.4
Q ss_pred ccCCCCCCccceEecCccccccCCCCCCeeecCCCC
Q 027127 135 QVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCG 170 (228)
Q Consensus 135 ~~C~nCg~~Fa~YfC~iCkl~Ddd~~K~~yHC~~CG 170 (228)
..|..|+..|+ || +..+||-.||
T Consensus 21 ~~C~~C~~~F~--------~~-----~RrhhCr~CG 43 (90)
T 3t7l_A 21 PNCMNCQVKFT--------FT-----KRRHHCRACG 43 (90)
T ss_dssp CBCTTTCCBCC--------SS-----SCCEECTTTC
T ss_pred CcCcCCCCccc--------ch-----hhCccccCCC
Confidence 45777777775 12 4557777776
No 63
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.35 E-value=56 Score=20.98 Aligned_cols=7 Identities=43% Similarity=1.070 Sum_probs=3.5
Q ss_pred cCCCCCC
Q 027127 136 VCVNCGV 142 (228)
Q Consensus 136 ~C~nCg~ 142 (228)
.||+||.
T Consensus 7 ~CP~C~~ 13 (50)
T 1pft_A 7 VCPACES 13 (50)
T ss_dssp SCTTTSC
T ss_pred eCcCCCC
Confidence 4555544
No 64
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.85 E-value=51 Score=23.36 Aligned_cols=9 Identities=22% Similarity=0.811 Sum_probs=5.5
Q ss_pred CeeecCCCC
Q 027127 162 KQYHCDGCG 170 (228)
Q Consensus 162 ~~yHC~~CG 170 (228)
.+|.|+.||
T Consensus 55 k~~~C~~C~ 63 (85)
T 2lv2_A 55 QVFPCKYCP 63 (85)
T ss_dssp SSEECTTSS
T ss_pred CccCCCCCC
Confidence 456666665
No 65
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=22.59 E-value=52 Score=23.17 Aligned_cols=24 Identities=33% Similarity=0.812 Sum_probs=10.6
Q ss_pred EecCccccccCCCCCCeeecCCCC
Q 027127 147 YFCESCKLFDDDTSKKQYHCDGCG 170 (228)
Q Consensus 147 YfC~iCkl~Ddd~~K~~yHC~~CG 170 (228)
-||+.|.-+--...++-|.|..|+
T Consensus 35 t~C~~C~~~lwGl~kqG~~C~~C~ 58 (77)
T 2enn_A 35 TFCSVCHEFVWGLNKQGYQCRQCN 58 (77)
T ss_dssp EECSSSCCEECCTTCCEEECSSSC
T ss_pred cCccccChhhccccccccCcCCCC
Confidence 455555322112234555555554
No 66
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.56 E-value=50 Score=21.14 Aligned_cols=42 Identities=31% Similarity=0.772 Sum_probs=22.9
Q ss_pred CCCcceecC-CCceeeccccCc-----cccccccCCccccCCCCCCCCccccC
Q 027127 168 GCGICRIGG-CDNFFHCNKCRC-----CYSMLLKNSHPCVEGAMHHDCPVCCE 214 (228)
Q Consensus 168 ~CGICRvG~-~~~ffHC~~C~~-----C~s~~l~~~HkCiE~~~~~nCPIC~E 214 (228)
.|.+|+.++ .++..-|+.|.. |+...|.. ++ ...--||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~----~P-~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYE----VP-DGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCS----CC-SSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCC----CC-CCcEECcCccc
Confidence 466666664 346677777765 44333322 11 23456888753
No 67
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.14 E-value=41 Score=24.02 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=24.2
Q ss_pred eeEcCCCCccccc------cccCCCCCCccceEecCcccc
Q 027127 121 QVICSLCGTEQKV------QQVCVNCGVCMGEYFCESCKL 154 (228)
Q Consensus 121 ~VlCg~C~teQ~v------~~~C~nCg~~Fa~YfC~iCkl 154 (228)
.|.|..|..+|-+ .-.|..||..+++-.=++-+|
T Consensus 15 ~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGGKa~l 54 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIV 54 (63)
T ss_dssp EEECSSSCCEEEEESSCSSCEECSSSCCEEEECCSSSCEE
T ss_pred EEECCCCCCeeEEEecCCeEEEccCcCCEEecCCCCcEEE
Confidence 7888888888776 136888888877665544444
No 68
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=22.03 E-value=38 Score=25.31 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=17.3
Q ss_pred eeEcCCCCccccccccCCCCCCc
Q 027127 121 QVICSLCGTEQKVQQVCVNCGVC 143 (228)
Q Consensus 121 ~VlCg~C~teQ~v~~~C~nCg~~ 143 (228)
.-.|..|...++.. .||+||..
T Consensus 23 ~rAC~~C~~v~~~d-~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCHYITSED-RCPVCGSR 44 (81)
T ss_dssp CEEETTTCBEESSS-SCTTTCCC
T ss_pred HHHHhhCCCccCCC-CCCCCCCC
Confidence 44699999988764 69999864
No 69
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.72 E-value=35 Score=17.34 Aligned_cols=8 Identities=25% Similarity=0.924 Sum_probs=4.8
Q ss_pred eeecCCCC
Q 027127 163 QYHCDGCG 170 (228)
Q Consensus 163 ~yHC~~CG 170 (228)
+|.|+.||
T Consensus 3 ~~~C~~C~ 10 (27)
T 2kvh_A 3 PFSCSLCP 10 (27)
T ss_dssp CEECSSSS
T ss_pred CccCCCcC
Confidence 56666665
No 70
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.54 E-value=55 Score=23.35 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=9.0
Q ss_pred ccceEecCccccc
Q 027127 143 CMGEYFCESCKLF 155 (228)
Q Consensus 143 ~Fa~YfC~iCkl~ 155 (228)
.+.+|.|.+|-+.
T Consensus 4 ~m~~y~C~vCGyi 16 (70)
T 1dx8_A 4 DEGKYECEACGYI 16 (70)
T ss_dssp CSSCEEETTTCCE
T ss_pred CCceEEeCCCCEE
Confidence 4667888888543
No 71
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.53 E-value=55 Score=24.54 Aligned_cols=32 Identities=28% Similarity=0.642 Sum_probs=20.7
Q ss_pred CCcceecCCC-ceeeccccC--ccccccccCCcccc
Q 027127 169 CGICRIGGCD-NFFHCNKCR--CCYSMLLKNSHPCV 201 (228)
Q Consensus 169 CGICRvG~~~-~ffHC~~C~--~C~s~~l~~~HkCi 201 (228)
|..|+...+- .-|+| +|| .|..-.+.+.|.|.
T Consensus 28 C~~C~kkvgl~~~f~C-rCg~~FC~~HRy~e~H~C~ 62 (85)
T 1wff_A 28 CFLCGKKTGLATSFEC-RCGNNFCASHRYAEAHGCN 62 (85)
T ss_dssp CSSSCCBCSSSSCEEC-TTCCEECTTTCSTGGGTCC
T ss_pred chhhCCeecccCCeEc-CCCCEecccCCCccCCCCc
Confidence 3345543332 36888 488 48887778888885
No 72
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=21.40 E-value=28 Score=24.59 Aligned_cols=11 Identities=36% Similarity=1.080 Sum_probs=8.9
Q ss_pred CCCCccccCcc
Q 027127 206 HHDCPVCCEVI 216 (228)
Q Consensus 206 ~~nCPIC~E~l 216 (228)
+..||||+|.+
T Consensus 11 ~~~CpICle~~ 21 (78)
T 1e4u_A 11 PVECPLCMEPL 21 (78)
T ss_dssp CCBCTTTCCBC
T ss_pred CCcCCccCccC
Confidence 45799999965
No 73
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=21.38 E-value=60 Score=24.29 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=24.7
Q ss_pred eeEcCCCCccccc------cccCCCCCCccceEecCccccc
Q 027127 121 QVICSLCGTEQKV------QQVCVNCGVCMGEYFCESCKLF 155 (228)
Q Consensus 121 ~VlCg~C~teQ~v------~~~C~nCg~~Fa~YfC~iCkl~ 155 (228)
.|.|.-|+.+|.+ ...|..||..+++-.=++-+|-
T Consensus 34 ~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGGKa~l~ 74 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLS 74 (82)
T ss_dssp EEECTTSCSCEEEESBCSSCCCCSSSCCCCEECCSSBCEEC
T ss_pred EEECCCCCCeeEEEecCCeEEEccccCCEEeccCCCCeEec
Confidence 7888888888776 2468888888777655554443
No 74
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=21.22 E-value=42 Score=22.29 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=8.4
Q ss_pred CCceeeccccCcccc
Q 027127 177 CDNFFHCNKCRCCYS 191 (228)
Q Consensus 177 ~~~ffHC~~C~~C~s 191 (228)
++.-|.|..||.-.+
T Consensus 29 ~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 29 GYRPRSCPECGKCFR 43 (60)
T ss_dssp TCCCEECTTTCCEES
T ss_pred CCcCeECCCCCCCcC
Confidence 445566666665443
No 75
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.63 E-value=47 Score=23.74 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=6.2
Q ss_pred ccCCCCCCccc
Q 027127 135 QVCVNCGVCMG 145 (228)
Q Consensus 135 ~~C~nCg~~Fa 145 (228)
..|..|+..|+
T Consensus 15 ~~C~~C~~~F~ 25 (84)
T 1x4u_A 15 GNCTGCSATFS 25 (84)
T ss_dssp SSCSSSCCCCC
T ss_pred CcCcCcCCccc
Confidence 35666666654
No 76
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=20.03 E-value=92 Score=25.52 Aligned_cols=43 Identities=28% Similarity=0.702 Sum_probs=25.9
Q ss_pred cCCCCcceecCCCceeeccccCc-----cccccccCCccccCCCCCCCCccccCc
Q 027127 166 CDGCGICRIGGCDNFFHCNKCRC-----CYSMLLKNSHPCVEGAMHHDCPVCCEV 215 (228)
Q Consensus 166 C~~CGICRvG~~~~ffHC~~C~~-----C~s~~l~~~HkCiE~~~~~nCPIC~E~ 215 (228)
-+.|++|+.|| +...|+.|.. |+...|.. + ....--||.|..-
T Consensus 7 ~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~----~-p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 7 EDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTLLS----F-PSGDWICTFCRDI 54 (207)
T ss_dssp CSSBTTTCCCE--EEEECSSSSCEECTTTSSSCCSS----C-CSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC--ceEEcCCCCCccCCccCCCCCCC----C-CCCCEEeCceeCc
Confidence 35688887665 5888888875 44333321 1 1234678888753
Done!