BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027128
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AMH|A Chain A, Crystal Structure Of Maf-Like Protein Tbru21784aaa From
T.Brucei
Length = 207
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 6/197 (3%)
Query: 34 IILGSSSMPRRKILAEMGYE----FSVMAADIDEKSIRKEKPEDLVMXXXXXXXXXXXSK 89
+I+G+SS R +L E + F ++ DIDEK+ R P +L K
Sbjct: 12 MIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKMKAVLEK 71
Query: 90 LQITDSQLGNVKQTILIVADTVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVT 149
+ + I + D VVV +REKP S E+ R FI YSGG TV++ +
Sbjct: 72 ARQHSPPISG--PAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATYALC 129
Query: 150 NLKTGFRKGEWDRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQVVGAM 209
+ T + E F + D+++E+ +E G +N AGGL++E + +V ++VG
Sbjct: 130 VVGTENVLVAHNETETFFSKFGDDIVERTLERGACMNSAGGLVVEDEDMSRHVVRIVGTS 189
Query: 210 DSVMGLPKAVTEKLIKE 226
V G+ AV EKL+ +
Sbjct: 190 YGVRGMEPAVVEKLLSQ 206
>pdb|1EX2|A Chain A, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EX2|B Chain B, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EXC|A Chain A, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
pdb|1EXC|B Chain B, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
Length = 189
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 34 IILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKEKPEDLVMXXXXXXXXXXXSKLQIT 93
+IL S S R+++L + +S++ ++++EK R PE+ V +
Sbjct: 5 LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKA------VA 58
Query: 94 DSQLGNVKQTILIVADTVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVT--NL 151
D I+I ADT+V +G KP +EEA ++ SG + +++V + N
Sbjct: 59 DLH----PHAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAENH 114
Query: 152 KTGFRKGEWDRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQVVGAMDS 211
F +D+ E+ F + +E I IE ++ AG I+ L +VK++ G S
Sbjct: 115 SETF----YDKTEVAFWSLSEEEIWTYIETKEPMDKAGAYGIQGRGAL-FVKKIDGDYYS 169
Query: 212 VMGLPKAVTEKLIKE 226
VMGLP + T + ++
Sbjct: 170 VMGLPISKTMRALRH 184
>pdb|4HEB|A Chain A, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
pdb|4HEB|B Chain B, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
Length = 210
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 34 IILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKEKPEDLVMXXXXXXXXXXXSKLQIT 93
+IL S S R+++L + +S++ ++++EK R PE+ V +
Sbjct: 26 LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKA------VA 79
Query: 94 DSQLGNVKQTILIVADTVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVT--NL 151
D I+I ADT+V +G KP +EEA ++ SG + +++V + N
Sbjct: 80 DLH----PHAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAENH 135
Query: 152 KTGFRKGEWDRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQVVGAMDS 211
F +D+ E+ F + +E I IE ++ AG I+ L +VK++ G S
Sbjct: 136 SETF----YDKTEVAFWSLSEEEIWTYIETKEPMDKAGAYGIQGRGAL-FVKKIDGDYYS 190
Query: 212 VMGLPKAVTEKLIKE 226
VMGLP + T + ++
Sbjct: 191 VMGLPISKTMRALRH 205
>pdb|2P5X|A Chain A, Crystal Structure Of Maf Domain Of Human N-Acetylserotonin
O- Methyltransferase-Like Protein
pdb|2P5X|B Chain B, Crystal Structure Of Maf Domain Of Human N-Acetylserotonin
O- Methyltransferase-Like Protein
Length = 230
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 33 KIILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKE--KPEDLVMXXXXXXXXXXXSKL 90
+++L S+S R++IL+ G F V+ + EK + P M ++L
Sbjct: 5 RVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVANRL 64
Query: 91 QITDSQLGNVKQTILIVADTVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVTN 150
D + +V +I ADT+V G+I EKP +++A R + SG + + + V + +
Sbjct: 65 YQKDLRAPDV----VIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVH 120
Query: 151 LKTGFRKGE------WDRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQ 204
+ + + ++ +++F E+ +E++ + + G ++ AGG I+ +L V+
Sbjct: 121 CSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQ-ALGGMLVES 179
Query: 205 VVGAMDSVMGLP-KAVTEKLIK 225
V G +V+G P ++L+K
Sbjct: 180 VHGDFLNVVGFPLNHFCKQLVK 201
>pdb|3EZ9|A Chain A, Partition Protein
pdb|3EZ9|B Chain B, Partition Protein
pdb|3EZF|A Chain A, Partition Protein
Length = 403
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 91 QITDSQLGNVKQTILIVADTVVVYEGVIREKPSSREEARR----FIKDYSGGQCATVSSV 146
Q Q+GNV+Q L + + + +Y R+ P R+ + F+ + GG TVS+V
Sbjct: 73 QFNKKQVGNVEQYALTIQNVIDIYAH--RKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTV 130
Query: 147 LVTN 150
+ +
Sbjct: 131 TLAH 134
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 157 KGEW-DRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQVVGAMDSVMGL 215
K EW + ++ E+PD+ E+LI+E + G+++ H + + ++ V
Sbjct: 284 KKEWIEEIKKNMPELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKE---- 339
Query: 216 PKAVTEKLIKEAL 228
PK + LI + L
Sbjct: 340 PKGIVNWLINDLL 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,766,585
Number of Sequences: 62578
Number of extensions: 204574
Number of successful extensions: 415
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 6
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)