Query 027128
Match_columns 228
No_of_seqs 136 out of 1038
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ex2_A Protein MAF; structural 100.0 1E-67 3.5E-72 447.7 22.4 182 32-226 3-184 (189)
2 2amh_A Septum formation protei 100.0 6.9E-67 2.3E-71 448.2 20.8 196 30-227 7-207 (207)
3 2p5x_A ASMTL, N-acetylserotoni 100.0 1.9E-66 6.4E-71 451.8 21.7 193 30-227 2-202 (230)
4 1vp2_A Putative xanthosine tri 96.1 0.19 6.6E-06 42.4 14.1 114 28-159 12-142 (208)
5 1k7k_A Hypothetical protein YG 94.9 0.3 1E-05 41.7 11.3 105 32-151 24-149 (221)
6 2car_A Inosine triphosphate py 94.6 0.14 4.7E-06 42.9 8.4 105 29-151 7-125 (196)
7 1b78_A Pyrophosphatase; struct 94.5 0.25 8.6E-06 41.2 9.6 108 32-159 9-130 (193)
8 3tqu_A Non-canonical purine NT 92.3 1.7 5.8E-05 36.4 11.4 106 32-150 5-129 (203)
9 1v7r_A Hypothetical protein PH 91.3 0.95 3.3E-05 37.4 8.6 109 32-159 1-122 (186)
10 2lqo_A Putative glutaredoxin R 65.7 9.5 0.00032 27.3 4.8 29 112-141 60-88 (92)
11 1l2m_A REP protein; A+B fold, 42.1 1.1E+02 0.0038 23.2 8.0 74 122-195 19-117 (118)
12 3op1_A Macrolide-efflux protei 27.0 52 0.0018 28.9 3.8 39 38-78 79-117 (308)
13 1s2m_A Putative ATP-dependent 26.3 77 0.0026 27.0 4.8 57 10-66 334-393 (400)
14 1gtk_A Porphobilinogen deamina 25.6 45 0.0015 29.6 3.2 25 34-58 123-147 (313)
15 4g9b_A Beta-PGM, beta-phosphog 24.7 79 0.0027 25.2 4.4 45 30-75 110-156 (243)
16 3lqv_P Splicing factor 3B subu 24.5 32 0.0011 21.3 1.4 12 168-179 21-32 (39)
17 3ecr_A Porphobilinogen deamina 23.1 53 0.0018 29.8 3.2 25 34-58 144-168 (364)
18 3gge_A PDZ domain-containing p 22.7 1.5E+02 0.0053 21.3 5.1 35 104-140 46-81 (95)
19 2db5_A INAD-like protein; PDZ 22.7 1.1E+02 0.0038 22.2 4.5 35 105-140 73-107 (128)
20 2kta_A Putative helicase; PSI, 21.9 40 0.0014 23.4 1.7 18 38-55 49-66 (74)
21 4a2c_A Galactitol-1-phosphate 21.1 1E+02 0.0036 26.0 4.6 28 32-59 186-213 (346)
22 1t5i_A C_terminal domain of A 20.6 79 0.0027 24.2 3.4 55 10-64 107-165 (172)
No 1
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=100.00 E-value=1e-67 Score=447.72 Aligned_cols=182 Identities=29% Similarity=0.417 Sum_probs=173.7
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcccccccCCCcceEEEEcceE
Q 027128 32 VKIILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKEKPEDLVMAIAEAKAAAIISKLQITDSQLGNVKQTILIVADTV 111 (228)
Q Consensus 32 ~~iILAS~SprR~~lL~~~gi~f~v~~s~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~~~~vI~aDTv 111 (228)
.+|||||+||||++||+++|++|++++++|||+..++.+|.+||.++|.+||++|++++. +.+|||||||
T Consensus 3 ~~lILAS~SPrR~eLL~~~gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~av~~~~~----------~~~VigaDTv 72 (189)
T 1ex2_A 3 KPLILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKAVADLHP----------HAIVIGADTM 72 (189)
T ss_dssp CCEEECCCCHHHHHHHHTTCCCCEECCCCCCCCCCTTSCHHHHHHHHHHHHHHHHHHHCT----------TSEEEEEEEE
T ss_pred CCEEEECCCHHHHHHHHhCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcC----------CCeEEEeCeE
Confidence 469999999999999999999999999999999888899999999999999999998763 2389999999
Q ss_pred EEECCEEecCCCCHHHHHHHHHHccCCcEEEEEeEEEEECCCCeEEEEEEEEEEEEcCCCHHHHHHHHHcCCCccceeee
Q 027128 112 VVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVTNLKTGFRKGEWDRVEIQFHEIPDEVIEKLIEEGIVLNVAGGL 191 (228)
Q Consensus 112 V~~dg~IlgKP~d~eeA~~~L~~lsG~~h~v~T~v~l~~~~~~~~~~~~~~t~V~F~~ls~~~I~~Yl~tge~~~kAG~Y 191 (228)
|++||+|+|||.|.+||++||++|||++|+|+|||||++ +++.++++++|+|+|++|++++|++||++|||+||||||
T Consensus 73 V~~~g~ilgKP~~~~eA~~mL~~lsG~~h~v~Tgv~l~~--~~~~~~~~~~t~V~F~~ls~~eI~~Yi~tgep~dkAGay 150 (189)
T 1ex2_A 73 VCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQA--ENHSETFYDKTEVAFWSLSEEEIWTYIETKEPMDKAGAY 150 (189)
T ss_dssp EEETTEEECCCSSHHHHHHHHHHHTTSEEEEEEEEEEEE--TTEEEEEEEEEEEEECCCCHHHHHHHHTTTSGGGSTTSC
T ss_pred EEECCEEcCCCCCHHHHHHHHHHhCCCcEEEEEEEEEEE--CCEEEEEEEEEEEEEcCCCHHHHHHHHhhCCccceeeEE
Confidence 999999999999999999999999999999999999997 467889999999999999999999999999999999999
Q ss_pred eecccCcccceeeeecccCCcccCCHHHHHHHHHH
Q 027128 192 IIEHSLILPYVKQVVGAMDSVMGLPKAVTEKLIKE 226 (228)
Q Consensus 192 ~Iqg~~g~~~i~~I~G~~~nVvGLPl~~l~~~L~~ 226 (228)
+||| .|+.||++|+|||+||||||+..++++|++
T Consensus 151 ~Iqg-~g~~~v~~I~Gdy~nVvGLPl~~l~~~L~~ 184 (189)
T 1ex2_A 151 GIQG-RGALFVKKIDGDYYSVMGLPISKTMRALRH 184 (189)
T ss_dssp CSSG-GGGGTEEEEESCHHHHHTCCHHHHHHHHTT
T ss_pred hhcC-ChhheEEEeECCCCceecCCHHHHHHHHHH
Confidence 9999 799999999999999999999999999975
No 2
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=100.00 E-value=6.9e-67 Score=448.22 Aligned_cols=196 Identities=33% Similarity=0.485 Sum_probs=178.4
Q ss_pred CCCeE-EEecCCHHHHHHHHhc----CCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcccccccCCCcceE
Q 027128 30 TPVKI-ILGSSSMPRRKILAEM----GYEFSVMAADIDEKSIRKEKPEDLVMAIAEAKAAAIISKLQITDSQLGNVKQTI 104 (228)
Q Consensus 30 ~~~~i-ILAS~SprR~~lL~~~----gi~f~v~~s~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~~~~ 104 (228)
..++| ||||+||||++||+++ |++|++++++|||+..+..+|.+||.++|.+||++|++++....... ..+.+
T Consensus 7 ~~~~l~ILAS~SPrR~eLL~~~~~~~gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~av~~~~~~~~~~~--~~~~~ 84 (207)
T 2amh_A 7 EEIRTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKMKAVLEKARQHSPPI--SGPAI 84 (207)
T ss_dssp CCCCEEEECCCCHHHHHHHHHHHTTTCSEEEECCCCCCGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTC--------CEE
T ss_pred CCCcEEEEccCCHHHHHHHHhhhhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhccccccc--CCCCE
Confidence 34579 9999999999999999 99999999999999888899999999999999999998763210000 01569
Q ss_pred EEEcceEEEECCEEecCCCCHHHHHHHHHHccCCcEEEEEeEEEEECCCCeEEEEEEEEEEEEcCCCHHHHHHHHHcCCC
Q 027128 105 LIVADTVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVTNLKTGFRKGEWDRVEIQFHEIPDEVIEKLIEEGIV 184 (228)
Q Consensus 105 vI~aDTvV~~dg~IlgKP~d~eeA~~~L~~lsG~~h~v~T~v~l~~~~~~~~~~~~~~t~V~F~~ls~~~I~~Yl~tge~ 184 (228)
||||||||++||+|+|||.|.+||++||++|||++|+|||||||++..+++.++++++|+|+|++|++++|++||++|||
T Consensus 85 VIgaDTvV~~~g~IlgKP~~~e~A~~mL~~lsG~~h~v~Tgv~l~~~~~~~~~~~~~~t~V~F~~ls~~eI~~Yi~tgep 164 (207)
T 2amh_A 85 ALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVATYALCVVGTENVLVAHNETETFFSKFGDDIVERTLERGAC 164 (207)
T ss_dssp EEEEEEEEEETTEEECSCSSHHHHHHHHHHHTTSEEEEEEEEEEEETTCSCEEEEEEEEEEEECCCCHHHHHHHHHHCGG
T ss_pred EEEECeEEEECCEEcCCCCCHHHHHHHHHHhCCCcEEEEEEEEEEEcCCCEEEEEEEEEEEEEcCCCHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999986667888999999999999999999999999999
Q ss_pred ccceeeeeecccCcccceeeeecccCCcccCCHHHHHHHHHHh
Q 027128 185 LNVAGGLIIEHSLILPYVKQVVGAMDSVMGLPKAVTEKLIKEA 227 (228)
Q Consensus 185 ~~kAG~Y~Iqg~~g~~~i~~I~G~~~nVvGLPl~~l~~~L~~~ 227 (228)
+||||||+|||+.|+.||++|+|||+||||||+..++++|+++
T Consensus 165 ~dkAGaY~Iqg~~g~~~v~~I~Gdy~nVvGLPl~~l~~~L~~~ 207 (207)
T 2amh_A 165 MNSAGGLVVEDEDMSRHVVRIVGTSYGVRGMEPAVVEKLLSQL 207 (207)
T ss_dssp GGSGGGCCTTSHHHHTTEEEEESCHHHHHTCCHHHHHHHHHTC
T ss_pred ccEeeeeeccCCchhccEeeeECcCCceecCCHHHHHHHHhhC
Confidence 9999999999955888999999999999999999999999753
No 3
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei; structural genomics, structural genomics consortium, unknown function; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-66 Score=451.80 Aligned_cols=193 Identities=25% Similarity=0.392 Sum_probs=175.8
Q ss_pred CCCeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHhhcccccccCCCcceEEEE
Q 027128 30 TPVKIILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKE--KPEDLVMAIAEAKAAAIISKLQITDSQLGNVKQTILIV 107 (228)
Q Consensus 30 ~~~~iILAS~SprR~~lL~~~gi~f~v~~s~iDE~~~~~~--~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~~~~vI~ 107 (228)
.+++|||||+||||++||+++|++|++++++|||+..+.. +|.+||.++|.+||++|++++..... .++.+|||
T Consensus 2 ~~~~lILAS~SPrR~eLL~~~Gi~f~v~~~~iDE~~~~~~~~~p~~~v~~lA~~KA~av~~~~~~~~~----~~~~~VIg 77 (230)
T 2p5x_A 2 LHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVANRLYQKDL----RAPDVVIG 77 (230)
T ss_dssp TTSCEEECCCCHHHHHHHHHTTCCCEECCCCCCCCCCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHS----CCCSEEEE
T ss_pred CCCcEEEeCCCHHHHHHHHHCCCCeEEeCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHhhhhcc----CCCCEEEE
Confidence 3568999999999999999999999999999999988776 89999999999999999987642110 12469999
Q ss_pred cceEEEECCEEecCCCCHHHHHHHHHHccCCcEEEEEeEEEEEC---CCCe---EEEEEEEEEEEEcCCCHHHHHHHHHc
Q 027128 108 ADTVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVTNL---KTGF---RKGEWDRVEIQFHEIPDEVIEKLIEE 181 (228)
Q Consensus 108 aDTvV~~dg~IlgKP~d~eeA~~~L~~lsG~~h~v~T~v~l~~~---~~~~---~~~~~~~t~V~F~~ls~~~I~~Yl~t 181 (228)
|||||++||+|||||.|.+||++||++|||++|+|||||||++. .+++ .++++++|+|+|++|++++|++||++
T Consensus 78 aDTvV~~dg~IlgKP~d~eeA~~mL~~lSG~~h~V~Tgv~l~~~~~~~~~~~~~~~~~~~~T~V~F~~lsd~eI~~Yi~t 157 (230)
T 2p5x_A 78 ADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHS 157 (230)
T ss_dssp EEEEEEETTEEECCCSSHHHHHHHHHHHTTSEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEECCCCHHHHHHHHHH
T ss_pred eCeEEEECCEEecCCCCHHHHHHHHHHhCCCcEEEEEEEEEEecccCCCCcceeEEEEEEEEEEEEecCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999752 2345 67899999999999999999999999
Q ss_pred CCCccceeeeeecccCcccceeeeecccCCcccCCHHHHHHHHHHh
Q 027128 182 GIVLNVAGGLIIEHSLILPYVKQVVGAMDSVMGLPKAVTEKLIKEA 227 (228)
Q Consensus 182 ge~~~kAG~Y~Iqg~~g~~~i~~I~G~~~nVvGLPl~~l~~~L~~~ 227 (228)
|||+||||||+||| .|+.||++|+|||+||||||+..++++|+++
T Consensus 158 gep~dkAGaY~IQg-~g~~~v~~I~Gdy~nVvGLPl~~l~~~L~~~ 202 (230)
T 2p5x_A 158 GEPMDKAGGYGIQA-LGGMLVESVHGDFLNVVGFPLNHFCKQLVKL 202 (230)
T ss_dssp TGGGGSGGGCCSSS-GGGGTEEEEEECHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCceeeeEeecC-ChhhcEeeeECCCCceecCCHHHHHHHHHHc
Confidence 99999999999999 7999999999999999999999999999764
No 4
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog; structural genomics, joint center for structural genomics, JCSG; 1.78A {Thermotoga maritima} SCOP: c.51.4.1
Probab=96.05 E-value=0.19 Score=42.42 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=74.2
Q ss_pred CCCCCeEEEecCCHHHHHHHHh-cCCceEEEcC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcccccccCCCcc
Q 027128 28 SATPVKIILGSSSMPRRKILAE-MGYEFSVMAA----DIDEKSIRKEKPEDLVMAIAEAKAAAIISKLQITDSQLGNVKQ 102 (228)
Q Consensus 28 ~~~~~~iILAS~SprR~~lL~~-~gi~f~v~~s----~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~~ 102 (228)
.+..++||+||+-+--.+=++. ++-.+++++. +++|+. .+ -..+|..||+.+++.+.
T Consensus 12 ~~~~~~iv~aT~N~~Kl~E~~~iL~~~iev~~~~~~~ei~E~g---~T----f~eNA~~KA~~aa~~~g----------- 73 (208)
T 1vp2_A 12 HMKKLTVYLATTNPHKVEEIKMIAPEWMEILPSPEKIEVVEDG---ET----FLENSVKKAVVYGKKLK----------- 73 (208)
T ss_dssp ---CEEEEESCCCHHHHHHHHTTCCTTEEEEECSSCCCCCCCC---SS----HHHHHHHHHHHHHHHHC-----------
T ss_pred hcccCeEEEEcCCHHHHHHHHHHhhcCcEEEecccCCCCCCCC---CC----HHHHHHHHHHHHHHHHC-----------
Confidence 4566789999999988776665 3311677763 333321 12 45688999999988753
Q ss_pred eEEEEcceEEEE---CCE-------EecCCCCHHHHHHHHHHccC--CcEEEEEeEEEEECCCCeEEEE
Q 027128 103 TILIVADTVVVY---EGV-------IREKPSSREEARRFIKDYSG--GQCATVSSVLVTNLKTGFRKGE 159 (228)
Q Consensus 103 ~~vI~aDTvV~~---dg~-------IlgKP~d~eeA~~~L~~lsG--~~h~v~T~v~l~~~~~~~~~~~ 159 (228)
..+|+=||=+.+ +|. ..|...|.+.-...|+.|.| ++...++++|++....+....+
T Consensus 74 ~pvlaDDSGL~VdAL~G~PGvySar~~g~~~d~~n~~~Ll~~L~~~~R~A~f~c~ia~~~~~~g~~~~f 142 (208)
T 1vp2_A 74 HPVMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDRRAAFVCSATFFDPVENTLISV 142 (208)
T ss_dssp SCEEEEEEEEEEGGGTTEEGGGTTTTTTTSCHHHHHHHHHHHTTTSCCEEEEEEEEEEEETTTTEEEEE
T ss_pred CCEEeeccEEEEeccCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCCeEEEEEEEEEEECCCCCEEEE
Confidence 468999997765 453 34555344455567888988 8888888888886424544433
No 5
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1 PDB: 2q16_A* 2pyu_A*
Probab=94.91 E-value=0.3 Score=41.67 Aligned_cols=105 Identities=13% Similarity=0.214 Sum_probs=67.3
Q ss_pred CeEEEecCCHHHHH----HHHhcCCceEEEcC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcccccccCCCcceEEE
Q 027128 32 VKIILGSSSMPRRK----ILAEMGYEFSVMAA-DIDEKSIRKEKPEDLVMAIAEAKAAAIISKLQITDSQLGNVKQTILI 106 (228)
Q Consensus 32 ~~iILAS~SprR~~----lL~~~gi~f~v~~s-~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~~~~vI 106 (228)
.+|||||+-+--.+ ||..+| +++++. +++...++. +- .--..+|..||+.+++.+. ..+|
T Consensus 24 ~~iv~AT~N~~Kl~E~~~iL~~~~--iev~~~~d~~~~ei~E-~g-~Tf~eNA~~KA~~aa~~~g-----------~pvl 88 (221)
T 1k7k_A 24 QKVVLATGNVGKVRELASLLSDFG--LDIVAQTDLGVDSAEE-TG-LTFIENAILKARHAAKVTA-----------LPAI 88 (221)
T ss_dssp EEEEESCCCHHHHHHHHHHHGGGT--EEEEETTTTTCCCCCC-CC-SSHHHHHHHHHHHHHHHHS-----------SCEE
T ss_pred cEEEEEcCCHHHHHHHHHHhhhcC--eEEEEhhhcCCCCccc-CC-CCHHHHHHHHHHHHHHHHC-----------CCEE
Confidence 37999999987654 444444 666653 343321211 10 1245788999999988753 4689
Q ss_pred EcceEEEEC---C-------EEecCCCC-HHHHHHHHHHccC-----CcEEEEEeEEEEEC
Q 027128 107 VADTVVVYE---G-------VIREKPSS-REEARRFIKDYSG-----GQCATVSSVLVTNL 151 (228)
Q Consensus 107 ~aDTvV~~d---g-------~IlgKP~d-~eeA~~~L~~lsG-----~~h~v~T~v~l~~~ 151 (228)
+=||=+.+| | +..|...+ .+.-...|+.|.| ++...++++|++..
T Consensus 89 aDDSGL~VdAL~G~PGvySar~ag~~~~d~~n~~kLL~~L~~~~~~~R~A~f~c~ial~~~ 149 (221)
T 1k7k_A 89 ADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRH 149 (221)
T ss_dssp EEEEEEEEGGGTTCBGGGSTTTTCTTCCHHHHHHHHHHHTTTSCGGGCEEEEEEEEEEESS
T ss_pred eeccEEEEeecCCCCcceeeeecCCCCCHHHHHHHHHHHhcCCCCCCCeEEEEEEEEEEEe
Confidence 999977754 4 23454444 4455667888888 77888888888753
No 6
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine triphosphate pyrophosphohydrolase, inosine triphosphatase deficiency, ITP, IMP; 1.09A {Homo sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
Probab=94.62 E-value=0.14 Score=42.92 Aligned_cols=105 Identities=14% Similarity=0.212 Sum_probs=66.3
Q ss_pred CCCCeEEEecCCHHHHHHHHh-cC--CceEEEc--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcccccccCCCcce
Q 027128 29 ATPVKIILGSSSMPRRKILAE-MG--YEFSVMA--ADIDEKSIRKEKPEDLVMAIAEAKAAAIISKLQITDSQLGNVKQT 103 (228)
Q Consensus 29 ~~~~~iILAS~SprR~~lL~~-~g--i~f~v~~--s~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~~~ 103 (228)
+...+||+||+-+--.+=++. ++ +.+++++ .+++|.. .+ -.++|..||+.+++.+. .
T Consensus 7 m~m~~iv~aT~N~~K~~E~~~iL~~~~~i~v~~~~~~~~E~~---~t----f~enA~~KA~~a~~~~g-----------~ 68 (196)
T 2car_A 7 LVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQ---GE----PDEISIQKCQEAVRQVQ-----------G 68 (196)
T ss_dssp HTTCEEEEECSCHHHHHHHHHHHCTTCCSEEEEECCCCCCBC---SC----HHHHHHHHHHHHHHHHS-----------S
T ss_pred cccceEEEEcCCHHHHHHHHHHcCCCCCcEEEECCCCCCCCC---CC----HHHHHHHHHHHHHHHHC-----------C
Confidence 344589999999886554443 22 2344444 4555643 22 45689999999988753 3
Q ss_pred EEEEcceEEEE---CCE--EecCCC-CHHHHHHHHHHccC---CcEEEEEeEEEEEC
Q 027128 104 ILIVADTVVVY---EGV--IREKPS-SREEARRFIKDYSG---GQCATVSSVLVTNL 151 (228)
Q Consensus 104 ~vI~aDTvV~~---dg~--IlgKP~-d~eeA~~~L~~lsG---~~h~v~T~v~l~~~ 151 (228)
.+|+=||=+.+ ||. ++-|-. +.......|+.|.| ++...++++|++..
T Consensus 69 pvlaDDSGL~vdAL~G~PGvySar~~~~~~~~~ll~~L~~~~~R~A~f~c~ia~~~~ 125 (196)
T 2car_A 69 PVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTG 125 (196)
T ss_dssp CEEEEEEEEEEGGGTTCEETTHHHHHHHHHHHHHHHTTTTCSCCEEEEEEEEEEECS
T ss_pred CEEeeccEEEEeccCCCCcchhhHhhhHhHHHHHHHHhcCCCCCcEEEEEEEEEEec
Confidence 68999997765 442 111111 23444567788887 67888888888753
No 7
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A {Methanocaldococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A*
Probab=94.45 E-value=0.25 Score=41.21 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=65.8
Q ss_pred CeEEEecCCHHHHHHHH----hcC-CceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcccccccCCCcceEEE
Q 027128 32 VKIILGSSSMPRRKILA----EMG-YEFSVMAADIDEKSIRKEKPEDLVMAIAEAKAAAIISKLQITDSQLGNVKQTILI 106 (228)
Q Consensus 32 ~~iILAS~SprR~~lL~----~~g-i~f~v~~s~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~~~~vI 106 (228)
++||+||+-+--.+=++ .+| +++....-+++|.. .--..+|..||+.+++.+. ..+|
T Consensus 9 m~iv~aT~N~~K~~E~~~iL~~~~~i~v~~~~~~~~E~~-------~tf~enA~~KA~~a~~~~g-----------~p~l 70 (193)
T 1b78_A 9 MKIYFATGNPNKIKEANIILKDLKDVEIEQIKISYPEIQ-------GTLEEVAEFGAKWVYNILK-----------KPVI 70 (193)
T ss_dssp -CEEEECSCHHHHHHHHHHTTTCTTCCEEEECCCCCCBS-------SCHHHHHHHHHHHHHHHHC-----------SCEE
T ss_pred cEEEEEcCCHHHHHHHHHHhcccCCeEEEECCCCCCCCC-------CCHHHHHHHHHHHHHHHHC-----------CCEE
Confidence 47999999998754444 344 55444433344432 2356789999999988753 3689
Q ss_pred EcceEEEE---CCE--EecCCC-CHHHHHHHHHHccC---CcEEEEEeEEEEECCCCeEEEE
Q 027128 107 VADTVVVY---EGV--IREKPS-SREEARRFIKDYSG---GQCATVSSVLVTNLKTGFRKGE 159 (228)
Q Consensus 107 ~aDTvV~~---dg~--IlgKP~-d~eeA~~~L~~lsG---~~h~v~T~v~l~~~~~~~~~~~ 159 (228)
+=||=+.+ ||. ++-|-. +...-...|+.|.| ++...++++|++. .+....+
T Consensus 71 aDDSGL~vdAL~G~PGvySar~~~~~~~~~Ll~~L~~~~~R~A~f~c~ia~~~--~~~~~~f 130 (193)
T 1b78_A 71 VEDSGFFVEALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGYCD--ENGVRLF 130 (193)
T ss_dssp EEEEEEEEGGGTTCEETTHHHHHHHTHHHHHHHHHTTCSCCEEEEEEEEEEEE--TTEEEEE
T ss_pred EEcCEEEEhhcCCCCcccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEEEE--CCeEEEE
Confidence 99997765 442 111111 12334455666665 6788888888876 4544433
No 8
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase; HET: MSE; 1.90A {Coxiella burnetii}
Probab=92.32 E-value=1.7 Score=36.39 Aligned_cols=106 Identities=11% Similarity=0.159 Sum_probs=65.2
Q ss_pred CeEEEecCCHHHHHHHHh-cC-CceEEEc-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcccccccCCCcceEEEEc
Q 027128 32 VKIILGSSSMPRRKILAE-MG-YEFSVMA-ADIDEKSIRKEKPEDLVMAIAEAKAAAIISKLQITDSQLGNVKQTILIVA 108 (228)
Q Consensus 32 ~~iILAS~SprR~~lL~~-~g-i~f~v~~-s~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~~~~vI~a 108 (228)
++|||||+-+--.+=++. ++ +.+++++ .++|-..+.. ...--.++|..||+.+++.+. .++|+-
T Consensus 5 ~~iv~aT~N~~K~~E~~~iL~~~~i~v~~~~~~~~~ei~E--~g~tf~eNA~~KA~~~~~~~g-----------~pvlaD 71 (203)
T 3tqu_A 5 LEIVLASQNSSKLAEMQELLRDLEIKFIPQTEFSVPDIEE--TGSTFVENAIIKARHAAKQTG-----------LPALAD 71 (203)
T ss_dssp EEEEECCCCHHHHHHHHHHTTTSSEEEEEGGGGTCCCCCC--CCSSHHHHHHHHHHHHHHHHS-----------SCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHhhhcCcEEEEhhhcCCCCCCC--CCCCHHHHHHHHHHHHHHHHC-----------cCEEEe
Confidence 479999999876543433 32 3466654 2343111110 111235689999999988763 468999
Q ss_pred ceEEEEC---C-------EEecCCCCHHHH-HHHHHHcc-----CCcEEEEEeEEEEE
Q 027128 109 DTVVVYE---G-------VIREKPSSREEA-RRFIKDYS-----GGQCATVSSVLVTN 150 (228)
Q Consensus 109 DTvV~~d---g-------~IlgKP~d~eeA-~~~L~~ls-----G~~h~v~T~v~l~~ 150 (228)
||=+.+| | +..|+..+.++- ...|+.|. .++...++++|++.
T Consensus 72 DSGL~vdAL~G~PGvySar~~g~~~~d~~n~~~LL~~L~~~~~~~R~A~f~c~ia~~~ 129 (203)
T 3tqu_A 72 DSGLTIAALNSAPGVFSSRYAGKNATDAERIQKVLEALEAADDSDRSASFHCVIALME 129 (203)
T ss_dssp EEEEEEGGGTTCBGGGTTTTTCTTCCHHHHHHHHHHHHHHHTCSCCEEEEEEEEEEES
T ss_pred ccEEEEhhhCCCCcceeeehhccCCCHHHHHHHHHHHhhCCCCCCCcEEEEEEEEEEE
Confidence 9987764 4 234655555443 44556665 46788888888875
No 9
>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken structural genomics/prote initiative, RSGI, hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii} SCOP: c.51.4.1 PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A 2zti_A 2e5x_A*
Probab=91.32 E-value=0.95 Score=37.42 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=66.3
Q ss_pred CeEEEecCCHHHH----HHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcccccccCCCcceEEEE
Q 027128 32 VKIILGSSSMPRR----KILAEMGYEFSVMAADIDEKSIRKEKPEDLVMAIAEAKAAAIISKLQITDSQLGNVKQTILIV 107 (228)
Q Consensus 32 ~~iILAS~SprR~----~lL~~~gi~f~v~~s~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~~~~vI~ 107 (228)
++||+||+-+-.. +||..+|+++ ++.++|-..+.+.+ -.++|..||+.+++.+. ..+|+
T Consensus 1 mkiv~aT~N~~K~~E~~~il~~~~i~v--~~~~~~~~e~~g~t----f~enA~~KA~~~~~~~g-----------~p~la 63 (186)
T 1v7r_A 1 MKIFFITSNPGKVREVANFLGTFGIEI--VQLKHEYPEIQAEK----LEDVVDFGISWLKGKVP-----------EPFMI 63 (186)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEE--EEECCCCCCCCCSS----HHHHHHHHHHHHTTTSC-----------SSEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhhcCcEE--EECCCCCCCCCCCC----HHHHHHHHHHHHHHHHC-----------CCeEe
Confidence 3699999998765 4555556544 44344322122223 45688999999977643 36899
Q ss_pred cceEEEE---CCE--EecCCC-CHHHHHHHHHHccC---CcEEEEEeEEEEECCCCeEEEE
Q 027128 108 ADTVVVY---EGV--IREKPS-SREEARRFIKDYSG---GQCATVSSVLVTNLKTGFRKGE 159 (228)
Q Consensus 108 aDTvV~~---dg~--IlgKP~-d~eeA~~~L~~lsG---~~h~v~T~v~l~~~~~~~~~~~ 159 (228)
=||=+.+ ||. ++-|-. +.......|+.|.| ++...++++|++.. +....+
T Consensus 64 DDSGL~vdAL~G~PGvySar~~~~~~~~~ll~~L~~~~~R~A~f~c~ia~~~~--~~~~~f 122 (186)
T 1v7r_A 64 EDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYID--GKAYKF 122 (186)
T ss_dssp EEEEEEEGGGTTTBGGGHHHHHHHTHHHHHHHHTTTCSCCEEEEEEEEEEEET--TEEEEE
T ss_pred cCcEEEEeecCCCCcchhHHHHhHhHHHHHHHHhcCCCCCeEEEEEEEEEEEC--CeEEEE
Confidence 9997765 442 111111 23345566777777 77888888888763 444333
No 10
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=65.70 E-value=9.5 Score=27.33 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=20.9
Q ss_pred EEECCEEecCCCCHHHHHHHHHHccCCcEE
Q 027128 112 VVYEGVIREKPSSREEARRFIKDYSGGQCA 141 (228)
Q Consensus 112 V~~dg~IlgKP~d~eeA~~~L~~lsG~~h~ 141 (228)
+.-||+++.-| +.++-.+.|..+.|-.|.
T Consensus 60 ~i~Dg~~l~~~-~~~el~~~L~el~gL~~~ 88 (92)
T 2lqo_A 60 KFADGSTLTNP-SADEVKAKLVKIAGLEHH 88 (92)
T ss_dssp EETTSCEEESC-CHHHHHHHHHHHHCCSCC
T ss_pred EEeCCEEEeCC-CHHHHHHHHHHhcCCccc
Confidence 33467777767 577788889999887653
No 11
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=42.12 E-value=1.1e+02 Score=23.17 Aligned_cols=74 Identities=11% Similarity=0.064 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHccCCcEEEEEeEEEEECCCCeEEEE-EEEEEEEEc-------CC-----------------CHHHHH
Q 027128 122 PSSREEARRFIKDYSGGQCATVSSVLVTNLKTGFRKGE-WDRVEIQFH-------EI-----------------PDEVIE 176 (228)
Q Consensus 122 P~d~eeA~~~L~~lsG~~h~v~T~v~l~~~~~~~~~~~-~~~t~V~F~-------~l-----------------s~~~I~ 176 (228)
|.+.|+|..+|+.|.-.+...|-.||--.-.+|..+.. .-..+-+|. ++ +.....
T Consensus 19 ~l~Ke~~l~~l~~l~~p~~~~yi~i~rE~H~dG~pHlH~LiQ~~gk~~~~n~rfFDl~~p~~s~~fHPniq~aksssdvk 98 (118)
T 1l2m_A 19 DLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVK 98 (118)
T ss_dssp CCCHHHHHHHHHHCCCSSCEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTSSCEECSSSSCEECCEEEEECSCTHHH
T ss_pred CCCHHHHHHHHHhhcCCcceeeeeehhhhccCCCeeeEEEEeecCceeccCCCcccccCCCCCCccCCCccccCChHHhh
Confidence 67899999999999998888888777654456654321 222222221 21 367799
Q ss_pred HHHHcCCCccceeeeeecc
Q 027128 177 KLIEEGIVLNVAGGLIIEH 195 (228)
Q Consensus 177 ~Yl~tge~~~kAG~Y~Iqg 195 (228)
.||+...-.---|-|.|.|
T Consensus 99 ~Yi~Kdgd~~e~G~fqidg 117 (118)
T 1l2m_A 99 SYIDKDGDVLEWGTFQIDG 117 (118)
T ss_dssp HHHHCCSSCEEESCCCCCC
T ss_pred hhcccCCCEEecCEEEeCC
Confidence 9998643333467777766
No 12
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=26.96 E-value=52 Score=28.91 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHH
Q 027128 38 SSSMPRRKILAEMGYEFSVMAADIDEKSIRKEKPEDLVMAI 78 (228)
Q Consensus 38 S~SprR~~lL~~~gi~f~v~~s~iDE~~~~~~~p~~~v~~l 78 (228)
++-..|.++|+.+|++..++ -+||+. +...+|++++..+
T Consensus 79 t~~~eK~~ll~~lGVD~v~~-~~F~~~-~a~ls~e~Fv~~l 117 (308)
T 3op1_A 79 LNPAERERKLKREGVEELYL-LDFSSQ-FASLTAQEFFATY 117 (308)
T ss_dssp SCHHHHHHHHHHHTCCEEEE-ECCCHH-HHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEE-ecCCHH-HHcCCHHHHHHHH
Confidence 34578999999999886544 466664 5567899998865
No 13
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=26.32 E-value=77 Score=27.01 Aligned_cols=57 Identities=23% Similarity=0.240 Sum_probs=41.1
Q ss_pred CCCCChHHHHhhhccccCCCCC-CeEEEecCCHHH--HHHHHhcCCceEEEcCCCCCCCC
Q 027128 10 DSPVSPSEFRQSLGNMEASATP-VKIILGSSSMPR--RKILAEMGYEFSVMAADIDEKSI 66 (228)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~~iILAS~SprR--~~lL~~~gi~f~v~~s~iDE~~~ 66 (228)
|.|.|+..|.|+.|+..-.... .-++|-+.+-.+ ++|.+.+|.++.-++.+++|...
T Consensus 334 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 393 (400)
T 1s2m_A 334 DFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLY 393 (400)
T ss_dssp SCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGGGT
T ss_pred CCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccccce
Confidence 5678999999999997765422 346676665543 35666799999888888877643
No 14
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=25.61 E-value=45 Score=29.56 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.8
Q ss_pred EEEecCCHHHHHHHHhcCCceEEEc
Q 027128 34 IILGSSSMPRRKILAEMGYEFSVMA 58 (228)
Q Consensus 34 iILAS~SprR~~lL~~~gi~f~v~~ 58 (228)
-+.+++|+||+.-|+.+..++++++
T Consensus 123 a~VGTSSlRR~aQL~~~rPdl~i~~ 147 (313)
T 1gtk_A 123 SIVGTSSLRRQCQLAERRPDLIIRS 147 (313)
T ss_dssp CEEECCCHHHHHHHHHHCTTSEEEC
T ss_pred CEEecCCHHHHHHHHHHCCCCEEEe
Confidence 4899999999999999988777775
No 15
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=24.74 E-value=79 Score=25.20 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=30.1
Q ss_pred CCCeEEEecCCHHHHHHHHhcCCc--eEEEcCCCCCCCCCCCCHHHHH
Q 027128 30 TPVKIILGSSSMPRRKILAEMGYE--FSVMAADIDEKSIRKEKPEDLV 75 (228)
Q Consensus 30 ~~~~iILAS~SprR~~lL~~~gi~--f~v~~s~iDE~~~~~~~p~~~v 75 (228)
..+++.++|+|++...+|+.+|+. |..+... |+-...+.+|.-|-
T Consensus 110 ~g~~i~i~t~~~~~~~~l~~~gl~~~fd~i~~~-~~~~~~KP~p~~~~ 156 (243)
T 4g9b_A 110 QQISVGLASVSLNAPTILAALELREFFTFCADA-SQLKNSKPDPEIFL 156 (243)
T ss_dssp TTCEEEECCCCTTHHHHHHHTTCGGGCSEECCG-GGCSSCTTSTHHHH
T ss_pred ccccceecccccchhhhhhhhhhcccccccccc-ccccCCCCcHHHHH
Confidence 357899999999999999999984 4444332 23233455666443
No 16
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=24.47 E-value=32 Score=21.30 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=10.1
Q ss_pred cCCCHHHHHHHH
Q 027128 168 HEIPDEVIEKLI 179 (228)
Q Consensus 168 ~~ls~~~I~~Yl 179 (228)
++++|+++++-+
T Consensus 21 rpltDEeLD~mL 32 (39)
T 3lqv_P 21 RPLSDEELDAMF 32 (39)
T ss_dssp CCCCHHHHHHTC
T ss_pred CCCCHHHHHHhC
Confidence 578999999877
No 17
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=23.10 E-value=53 Score=29.76 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.9
Q ss_pred EEEecCCHHHHHHHHhcCCceEEEc
Q 027128 34 IILGSSSMPRRKILAEMGYEFSVMA 58 (228)
Q Consensus 34 iILAS~SprR~~lL~~~gi~f~v~~ 58 (228)
-+.+++|+||+.-|+.+..++++++
T Consensus 144 a~VGTSSlRR~aQL~~~rPdL~i~~ 168 (364)
T 3ecr_A 144 SVVGTSSLRRAAQLQRKFPHLEFRS 168 (364)
T ss_dssp CEEECCCHHHHHHHHHHCTTSEEEC
T ss_pred CEEeCCcHHHHHHHHHHCCCCEEEE
Confidence 4899999999999999988877774
No 18
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=22.69 E-value=1.5e+02 Score=21.29 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=28.0
Q ss_pred EEEEcceEEEECCEEe-cCCCCHHHHHHHHHHccCCcE
Q 027128 104 ILIVADTVVVYEGVIR-EKPSSREEARRFIKDYSGGQC 140 (228)
Q Consensus 104 ~vI~aDTvV~~dg~Il-gKP~d~eeA~~~L~~lsG~~h 140 (228)
.+-..|.|+..||+-+ |++ ++|+.+||+...+..-
T Consensus 46 ~L~vGD~I~~VNG~~v~g~~--h~evv~lLk~~~~g~~ 81 (95)
T 3gge_A 46 TICVGDHIESINGENIVGWR--HYDVAKKLKELKKEEL 81 (95)
T ss_dssp TCCTTCEEEEETTEECTTCC--HHHHHHHHHHSCTTCE
T ss_pred CCCCCCEEEEECCEEccCCC--HHHHHHHHHhCCCCCE
Confidence 3677899999999755 665 5899999999986543
No 19
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=22.65 E-value=1.1e+02 Score=22.19 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=26.8
Q ss_pred EEEcceEEEECCEEecCCCCHHHHHHHHHHccCCcE
Q 027128 105 LIVADTVVVYEGVIREKPSSREEARRFIKDYSGGQC 140 (228)
Q Consensus 105 vI~aDTvV~~dg~IlgKP~d~eeA~~~L~~lsG~~h 140 (228)
+-..|.|+..||+-+..-.+.+++.++|+. .|...
T Consensus 73 L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v 107 (128)
T 2db5_A 73 LKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSL 107 (128)
T ss_dssp CCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEE
T ss_pred CCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeE
Confidence 455788899998766545689999999998 66543
No 20
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=21.89 E-value=40 Score=23.44 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHhcCCceE
Q 027128 38 SSSMPRRKILAEMGYEFS 55 (228)
Q Consensus 38 S~SprR~~lL~~~gi~f~ 55 (228)
.=|+.|.++|+.+|+.|.
T Consensus 49 ~Ls~eRi~~L~~lGf~w~ 66 (74)
T 2kta_A 49 KLPNDRRLLLDKIGFVWS 66 (74)
T ss_dssp CCCHHHHHHHHHHTCCCC
T ss_pred CCCHHHHHHHHHcCCEec
Confidence 358999999999998764
No 21
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=21.14 E-value=1e+02 Score=26.00 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=23.1
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcC
Q 027128 32 VKIILGSSSMPRRKILAEMGYEFSVMAA 59 (228)
Q Consensus 32 ~~iILAS~SprR~~lL~~~gi~f~v~~s 59 (228)
..+|.++.|+.|.++++++|.+..+...
T Consensus 186 ~~vi~~~~~~~k~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 186 KSVTAIDISSEKLALAKSFGAMQTFNSS 213 (346)
T ss_dssp SEEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred cEEEEEechHHHHHHHHHcCCeEEEeCC
Confidence 3678899999999999999987766543
No 22
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=20.62 E-value=79 Score=24.19 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=33.5
Q ss_pred CCCCChHHHHhhhccccCCCC-CCeEEEecCCH---HHHHHHHhcCCceEEEcCCCCCC
Q 027128 10 DSPVSPSEFRQSLGNMEASAT-PVKIILGSSSM---PRRKILAEMGYEFSVMAADIDEK 64 (228)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~iILAS~Sp---rR~~lL~~~gi~f~v~~s~iDE~ 64 (228)
|.|-||..|.|+.|+-.-... ..-++|.+... .-++|-+.++.++.-.+.++|+.
T Consensus 107 d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 165 (172)
T 1t5i_A 107 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDIS 165 (172)
T ss_dssp SCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC------
T ss_pred CCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhchh
Confidence 567899999999988654332 23466666543 23455667899888888777664
Done!