Query 027130
Match_columns 227
No_of_seqs 158 out of 764
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 1.7E-44 3.6E-49 297.6 15.1 145 13-159 2-155 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 1.2E-38 2.5E-43 251.1 13.0 140 16-159 2-150 (158)
3 smart00512 Skp1 Found in Skp1 99.9 4E-27 8.7E-32 180.8 11.0 100 16-116 2-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 2.1E-24 4.6E-29 158.2 4.3 70 89-158 1-70 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.7 1.6E-18 3.5E-23 121.6 5.4 60 17-80 2-61 (62)
6 KOG3473 RNA polymerase II tran 99.7 1.7E-16 3.7E-21 119.8 7.3 98 13-116 14-112 (112)
7 PHA02713 hypothetical protein; 98.9 2.2E-08 4.7E-13 97.3 12.2 105 15-139 25-131 (557)
8 PF00651 BTB: BTB/POZ domain; 98.7 9.2E-08 2E-12 72.1 9.5 98 15-129 10-109 (111)
9 PHA02790 Kelch-like protein; P 98.7 2.7E-08 5.9E-13 94.8 7.8 125 20-184 25-151 (480)
10 KOG4441 Proteins containing BT 98.6 1.6E-07 3.4E-12 91.7 9.7 154 16-213 37-191 (571)
11 PHA03098 kelch-like protein; P 98.4 1.9E-06 4.1E-11 82.5 9.8 104 15-140 9-114 (534)
12 smart00225 BTB Broad-Complex, 98.3 2.9E-06 6.2E-11 60.1 6.6 88 18-124 2-90 (90)
13 KOG4682 Uncharacterized conser 95.2 0.041 8.9E-07 51.8 5.8 114 16-151 70-187 (488)
14 KOG4350 Uncharacterized conser 95.0 0.13 2.8E-06 48.7 8.5 108 15-127 44-173 (620)
15 KOG2716 Polymerase delta-inter 93.2 0.53 1.2E-05 41.3 8.2 112 15-143 4-122 (230)
16 KOG0783 Uncharacterized conser 90.8 0.49 1.1E-05 48.5 5.8 115 11-141 708-825 (1267)
17 KOG3433 Protein involved in me 85.8 1.1 2.3E-05 38.2 3.8 54 92-150 137-200 (203)
18 COG5124 Protein predicted to b 82.1 1.1 2.4E-05 37.9 2.4 32 115-151 174-205 (209)
19 PF11822 DUF3342: Domain of un 82.0 2.4 5.1E-05 39.0 4.7 91 25-131 13-104 (317)
20 PF02214 BTB_2: BTB/POZ domain 81.3 0.86 1.9E-05 33.5 1.4 83 24-123 6-94 (94)
21 PF07928 Vps54: Vps54-like pro 78.5 2.5 5.4E-05 34.0 3.3 121 24-184 1-126 (135)
22 KOG2075 Topoisomerase TOP1-int 61.9 48 0.001 32.3 8.4 103 26-130 129-249 (521)
23 KOG1665 AFH1-interacting prote 58.4 14 0.00031 32.7 3.9 92 15-124 8-104 (302)
24 KOG0511 Ankyrin repeat protein 57.5 30 0.00064 33.0 6.1 106 23-132 298-431 (516)
25 PF09278 MerR-DNA-bind: MerR, 56.1 16 0.00034 24.8 3.2 40 132-185 13-52 (65)
26 PF03962 Mnd1: Mnd1 family; I 49.7 16 0.00035 30.9 2.9 42 104-150 144-187 (188)
27 PRK12540 RNA polymerase sigma 46.3 62 0.0013 26.5 5.8 18 130-147 124-141 (182)
28 PRK09246 amidophosphoribosyltr 38.7 79 0.0017 30.7 6.1 70 56-147 360-432 (501)
29 PRK05365 malonic semialdehyde 37.5 23 0.00049 29.4 1.9 35 106-150 130-164 (195)
30 cd02148 Nitroreductase_5 Nitro 35.0 24 0.00053 28.9 1.7 34 107-150 124-157 (185)
31 PF02519 Auxin_inducible: Auxi 31.4 1.8E+02 0.0038 22.1 5.8 57 17-76 40-99 (100)
32 PF11978 MVP_shoulder: Shoulde 31.4 43 0.00093 26.5 2.4 41 108-148 37-90 (118)
33 PF15063 TC1: Thyroid cancer p 31.1 31 0.00068 25.2 1.5 42 125-166 28-69 (79)
34 COG4957 Predicted transcriptio 30.7 40 0.00088 27.4 2.2 35 133-185 98-132 (148)
35 KOG4591 Uncharacterized conser 28.7 73 0.0016 27.9 3.5 58 57-129 107-164 (280)
36 PF11792 Baculo_LEF5_C: Baculo 27.9 26 0.00057 22.8 0.6 14 197-210 22-35 (43)
37 PF12556 CobS_N: Cobaltochelat 25.5 40 0.00086 21.1 1.1 12 139-150 14-25 (36)
38 PF03656 Pam16: Pam16; InterP 25.3 39 0.00085 27.0 1.3 45 130-174 51-101 (127)
39 PRK11053 dihydropteridine redu 24.9 59 0.0013 27.3 2.4 34 104-147 147-180 (217)
40 TIGR01999 iscU FeS cluster ass 24.8 76 0.0017 24.7 2.8 38 107-144 50-88 (124)
41 COG4565 CitB Response regulato 24.7 79 0.0017 27.7 3.1 27 54-81 145-171 (224)
42 TIGR03419 NifU_clost FeS clust 24.1 86 0.0019 24.4 3.0 38 107-144 46-84 (121)
43 PRK11325 scaffold protein; Pro 24.0 79 0.0017 24.8 2.8 38 107-144 52-90 (127)
44 cd00167 SANT 'SWI3, ADA2, N-Co 23.8 70 0.0015 18.9 2.0 21 124-144 22-42 (45)
45 KOG3442 Uncharacterized conser 23.6 1.5E+02 0.0033 23.8 4.2 27 132-158 54-80 (132)
46 KOG2609 Cyclin D-interacting p 23.6 67 0.0015 28.1 2.5 49 160-215 154-202 (228)
47 COG3370 Uncharacterized protei 22.7 59 0.0013 25.5 1.7 38 100-152 52-89 (113)
48 PF01592 NifU_N: NifU-like N t 22.4 1E+02 0.0022 24.0 3.1 22 120-141 64-85 (126)
49 cd02140 Nitroreductase_4 Nitro 22.3 60 0.0013 26.7 1.9 38 104-149 127-164 (192)
50 PF13798 PCYCGC: Protein of un 22.0 1.1E+02 0.0024 25.4 3.4 23 120-142 118-140 (158)
51 smart00717 SANT SANT SWI3, AD 21.9 82 0.0018 18.9 2.1 20 125-144 25-44 (49)
52 PF00249 Myb_DNA-binding: Myb- 20.6 2.3E+02 0.0051 17.8 4.4 36 103-143 8-44 (48)
53 PRK09123 amidophosphoribosyltr 20.2 2.1E+02 0.0045 27.8 5.4 62 64-147 371-434 (479)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-44 Score=297.59 Aligned_cols=145 Identities=37% Similarity=0.590 Sum_probs=132.4
Q ss_pred CCCccEEEEeCCCCEEEecHHHHhHCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC--------
Q 027130 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS-------- 84 (227)
Q Consensus 13 ~~~~~i~L~SsDG~~f~V~~~~a~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~-------- 84 (227)
++++.|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++
T Consensus 2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~ 79 (162)
T KOG1724|consen 2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL 79 (162)
T ss_pred CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence 567899999999999999999999999999999999886422 599999 8999999999999999998643
Q ss_pred -CccccchhhhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChhhhhcccc
Q 027130 85 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLK 159 (227)
Q Consensus 85 -s~~~i~~wD~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T~EEe~e~~~ 159 (227)
....+++||++|+++|..+||+|+.|||||+|++|+++||++||+|++||||+|||..|||++|+|+||+.++++
T Consensus 80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~ 155 (162)
T KOG1724|consen 80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRK 155 (162)
T ss_pred cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhh
Confidence 223489999999999999999999999999999999999999999999999999999999999999988866553
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=251.05 Aligned_cols=140 Identities=34% Similarity=0.518 Sum_probs=127.4
Q ss_pred ccEEEEeCCCCEEEecHHHHhHCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC---Cc------
Q 027130 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS---SN------ 86 (227)
Q Consensus 16 ~~i~L~SsDG~~f~V~~~~a~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~---s~------ 86 (227)
+.|.|.|.||++|.|+..+|..|-+|++|+.+.+. -+-+||+| +|+|.+|.+|++||+||+.... ++
T Consensus 2 s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 2 SMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred CceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 57999999999999999999999999999876542 37789999 9999999999999999997431 11
Q ss_pred cccchhhhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChhhhhcccc
Q 027130 87 KERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLK 159 (227)
Q Consensus 87 ~~i~~wD~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T~EEe~e~~~ 159 (227)
.....||+.|+.+|+++|++++.|||||+|++|+++||+.||.+|+||||+|||++|||++||||||++.+++
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irk 150 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRK 150 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 2356799999999999999999999999999999999999999999999999999999999999999999876
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.94 E-value=4e-27 Score=180.82 Aligned_cols=100 Identities=32% Similarity=0.523 Sum_probs=89.1
Q ss_pred ccEEEEeCCCCEEEecHHHHhHCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCc---cccchh
Q 027130 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSN---KERKSF 92 (227)
Q Consensus 16 ~~i~L~SsDG~~f~V~~~~a~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~---~~i~~w 92 (227)
++|+|+|+||++|.|++++|++|++|++|+.+.+.+...+.+|||| +|++.+|++|++||+||+.++... ..+++|
T Consensus 2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 5899999999999999999999999999998766543233689999 899999999999999999876433 357999
Q ss_pred hhhhccCChhHHHHHHhhhccCCc
Q 027130 93 DEKFIRMDTKRLCELTSAADSLQL 116 (227)
Q Consensus 93 D~eFl~id~~~L~eLi~AA~yL~I 116 (227)
|.+|++++.+.||+|+.|||||+|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.90 E-value=2.1e-24 Score=158.21 Aligned_cols=70 Identities=40% Similarity=0.657 Sum_probs=60.6
Q ss_pred cchhhhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChhhhhccc
Q 027130 89 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPL 158 (227)
Q Consensus 89 i~~wD~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T~EEe~e~~ 158 (227)
+++||++|++++.+.|++|+.||+||+|++|+++||++||.+|+||||+|||++|||++|+|+||+++++
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~ 70 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIR 70 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999998855
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.75 E-value=1.6e-18 Score=121.64 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=53.6
Q ss_pred cEEEEeCCCCEEEecHHHHhHCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcC
Q 027130 17 YIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQ 80 (227)
Q Consensus 17 ~i~L~SsDG~~f~V~~~~a~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~ 80 (227)
+|+|+|+||++|.|++++|++|++|++|+.+.+.. ..+|||| +|++.+|++|++||+||+
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHK 61 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999866542 2279999 999999999999999996
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.67 E-value=1.7e-16 Score=119.83 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=86.0
Q ss_pred CCCccEEEEeCCCCEEEecHHHHhHCHHHHHHHhhcCC-CCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCccccch
Q 027130 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGM-GSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKS 91 (227)
Q Consensus 13 ~~~~~i~L~SsDG~~f~V~~~~a~~S~~I~~ml~~~~~-~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~ 91 (227)
|.+.+|+|+|+||.+|.|.+++|+.|++||.|+...+. .+..++.+.++ ++.|.+|+||++|+.+...+.++..++|+
T Consensus 14 p~~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPe 92 (112)
T KOG3473|consen 14 PDSMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPE 92 (112)
T ss_pred cchhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCC
Confidence 44679999999999999999999999999999986664 33456789999 89999999999999998777666678899
Q ss_pred hhhhhccCChhHHHHHHhhhccCCc
Q 027130 92 FDEKFIRMDTKRLCELTSAADSLQL 116 (227)
Q Consensus 92 wD~eFl~id~~~L~eLi~AA~yL~I 116 (227)
| .+.+++.++|+.|||||++
T Consensus 93 F-----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 93 F-----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred C-----CCCHHHHHHHHHHhhhhcC
Confidence 7 6899999999999999974
No 7
>PHA02713 hypothetical protein; Provisional
Probab=98.86 E-value=2.2e-08 Score=97.29 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=85.0
Q ss_pred CccEEEEeCCCCEEEecHHHH-hHCHHHHHHHhhcCCCCC-CCcccccCCCCCHHHHHHHHHHHHhcCCCCCCccccchh
Q 027130 15 KSYIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSS-KNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (227)
Q Consensus 15 ~~~i~L~SsDG~~f~V~~~~a-~~S~~I~~ml~~~~~~~~-~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~w 92 (227)
-..|+|...+|+.|.+++.++ ..|++++.|+.. ++.++ ....|.|. +|++.+|+.|++|++...
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~------------ 90 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH------------ 90 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEec-cCCHHHHHHHHHHhcCCC------------
Confidence 568999888899999999994 589999999864 44322 24568898 899999999999998853
Q ss_pred hhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHH
Q 027130 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEI 139 (227)
Q Consensus 93 D~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEI 139 (227)
++.+.+.+|+.||++|+|+.|.+.||.++...+.-.+-=+|
T Consensus 91 ------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i 131 (557)
T PHA02713 91 ------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYM 131 (557)
T ss_pred ------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHH
Confidence 35667999999999999999999999999885554443333
No 8
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.74 E-value=9.2e-08 Score=72.11 Aligned_cols=98 Identities=23% Similarity=0.292 Sum_probs=78.0
Q ss_pred CccEEEEeCCCCEEEecHHHH-hHCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCccccchhh
Q 027130 15 KSYIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (227)
Q Consensus 15 ~~~i~L~SsDG~~f~V~~~~a-~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~wD 93 (227)
...++|+..||..|.|++.++ ..|+++++++...+........|+++ ++++..+..+++||+...
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~------------- 75 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGE------------- 75 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSE-------------
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCc-------------
Confidence 568999999999999999995 67999999998653222223468888 899999999999997654
Q ss_pred hhhccCC-hhHHHHHHhhhccCCcchHHHHHHHHHHH
Q 027130 94 EKFIRMD-TKRLCELTSAADSLQLKPLVDLTSRALAR 129 (227)
Q Consensus 94 ~eFl~id-~~~L~eLi~AA~yL~I~~Lldl~c~~vA~ 129 (227)
+.++ .+.+.+++.+|++|+++.|.+.|+..+..
T Consensus 76 ---~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 76 ---IEINSDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp ---EEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ---ccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 2233 67799999999999999999999998764
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=98.73 E-value=2.7e-08 Score=94.76 Aligned_cols=125 Identities=13% Similarity=0.075 Sum_probs=99.6
Q ss_pred EEeCCCCEEEecHHH-HhHCHHHHHHHhhcCCCCCCCcccccC-CCCCHHHHHHHHHHHHhcCCCCCCccccchhhhhhc
Q 027130 20 LQTADGSIQQVEQEV-AMFCPLICQEVIQKGMGSSKNYAISLP-QRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFI 97 (227)
Q Consensus 20 L~SsDG~~f~V~~~~-a~~S~~I~~ml~~~~~~~~~~~~IpLp-~~Vss~iL~kIieyc~~h~~~~~s~~~i~~wD~eFl 97 (227)
+.-.-|..|.+++.+ |..|++++.|+.. ++.++. ..|.+. .+|+..+|+.|++|++.-+ +
T Consensus 25 ~~~~~~~~~~~HR~VLAa~S~YFraMF~~-~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~----------------l 86 (480)
T PHA02790 25 IIEAIGGNIIVNSTILKKLSPYFRTHLRQ-KYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGK----------------V 86 (480)
T ss_pred EEEEcCcEEeeehhhhhhcCHHHHHHhcC-Cccccc-cceEEEecCcCHHHHHHHHHhheeee----------------E
Confidence 334568899999999 6789999999874 454432 234431 2799999999999997766 5
Q ss_pred cCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChhhhhcccccCCCchhHHHhHHHHHHH
Q 027130 98 RMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKK 177 (227)
Q Consensus 98 ~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T~EEe~e~~~~~~~~p~~~~~~~l~~~~ 177 (227)
.++.+++.+|+.||++|+|+.+++.||+++.. .++..| |..+...+....|.+|..+.
T Consensus 87 ~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~------------~l~~~N----------Cl~i~~~A~~y~~~~L~~~a 144 (480)
T PHA02790 87 YIDSHNVVNLLRASILTSVEFIIYTCINFILR------------DFRKEY----------CVECYMMGIEYGLSNLLCHT 144 (480)
T ss_pred EEecccHHHHHHHHHHhChHHHHHHHHHHHHh------------hCCcch----------HHHHHHHHHHhCHHHHHHHH
Confidence 67888899999999999999999999999987 555666 66677777888888888888
Q ss_pred HHHHHHH
Q 027130 178 RKELKER 184 (227)
Q Consensus 178 ~~~~~~~ 184 (227)
++++.+.
T Consensus 145 ~~fi~~n 151 (480)
T PHA02790 145 KDFIAKH 151 (480)
T ss_pred HHHHHHh
Confidence 8887665
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.62 E-value=1.6e-07 Score=91.72 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=116.0
Q ss_pred ccEEEEeCCCCEEEecHHH-HhHCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCccccchhhh
Q 027130 16 SYIWLQTADGSIQQVEQEV-AMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDE 94 (227)
Q Consensus 16 ~~i~L~SsDG~~f~V~~~~-a~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~wD~ 94 (227)
..+.|.-.+ +.|..++.+ |..|++++.|+.. +..+.....|.|. .|++.+|..+++|++...
T Consensus 37 cDv~L~v~~-~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~-------------- 99 (571)
T KOG4441|consen 37 CDVTLLVGD-REFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGK-------------- 99 (571)
T ss_pred ceEEEEECC-eeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcce--------------
Confidence 456775555 999999999 5689999999885 4544567789998 799999999999999887
Q ss_pred hhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChhhhhcccccCCCchhHHHhHHHH
Q 027130 95 KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLY 174 (227)
Q Consensus 95 eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T~EEe~e~~~~~~~~p~~~~~~~l~ 174 (227)
+.++.+++-+|+.||++|+|+.+++.||.++.. .+...| +..+...+....|.+|.
T Consensus 100 --i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~------------~l~~~N----------clgi~~~a~~~~~~~L~ 155 (571)
T KOG4441|consen 100 --LEISEDNVQELLEAASLLQIPEVVDACCEFLES------------QLDPSN----------CLGIRRFAELHSCTELL 155 (571)
T ss_pred --EEechHhHHHHHHHHHHhhhHHHHHHHHHHHHh------------cCCHHH----------HHHHHHHHHhcCcHHHH
Confidence 578899999999999999999999999999976 333444 44455566667778888
Q ss_pred HHHHHHHHHHhhhccccchhhhcccCChHHHHhhhcCCC
Q 027130 175 AKKRKELKEREKLKNVESEEERVDERSVDDLLQFINGGE 213 (227)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (227)
...+.++.+.-. ++ ...+.+-+.|.++|.+.|.-+.
T Consensus 156 ~~a~~~i~~~F~--~v-~~~eefl~L~~~~l~~ll~~d~ 191 (571)
T KOG4441|consen 156 EVADEYILQHFA--EV-SKTEEFLLLSLEELIGLLSSDD 191 (571)
T ss_pred HHHHHHHHHHHH--HH-hccHHhhCCCHHHHHhhccccC
Confidence 877777766521 11 1123345567777777766544
No 11
>PHA03098 kelch-like protein; Provisional
Probab=98.37 E-value=1.9e-06 Score=82.49 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=84.5
Q ss_pred CccEEEEe-CCCCEEEecHHHHh-HCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCccccchh
Q 027130 15 KSYIWLQT-ADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (227)
Q Consensus 15 ~~~i~L~S-sDG~~f~V~~~~a~-~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~w 92 (227)
-..++|.- .+|+.|.+++.++. .|++++.|+.. ++. ...|.|+ . +..+|+.|++|++...
T Consensus 9 ~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~-~~~---~~~i~l~-~-~~~~~~~~l~y~Ytg~------------ 70 (534)
T PHA03098 9 FCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKN-NFK---ENEINLN-I-DYDSFNEVIKYIYTGK------------ 70 (534)
T ss_pred CCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhC-CCC---CceEEec-C-CHHHHHHHHHHhcCCc------------
Confidence 35677764 68999999999954 69999999874 332 4678898 6 9999999999998876
Q ss_pred hhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHH
Q 027130 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIR 140 (227)
Q Consensus 93 D~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR 140 (227)
+.++.+.+.+|+.||++|+++.|.++|++++...+.-.+.-++.
T Consensus 71 ----~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~ 114 (534)
T PHA03098 71 ----INITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIY 114 (534)
T ss_pred ----eEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHH
Confidence 45778889999999999999999999999998876544444443
No 12
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.27 E-value=2.9e-06 Score=60.11 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=69.0
Q ss_pred EEEEeCCCCEEEecHHHHh-HCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCccccchhhhhh
Q 027130 18 IWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKF 96 (227)
Q Consensus 18 i~L~SsDG~~f~V~~~~a~-~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~wD~eF 96 (227)
++| ..+|..|.+++.++. .|+.++.|+.... .......|.++ +++..+++.+++|++...
T Consensus 2 v~i-~v~~~~~~~h~~iL~~~s~~f~~~~~~~~-~~~~~~~i~l~-~~~~~~f~~~l~~ly~~~---------------- 62 (90)
T smart00225 2 VTL-VVGGKKFKAHKAVLAACSPYFKALFSGDF-KESKKSEIYLD-DVSPEDFRALLEFLYTGK---------------- 62 (90)
T ss_pred eEE-EECCEEEehHHHHHhhcCHHHHHHHcCCC-ccCCCCEEEec-CCCHHHHHHHHHeecCce----------------
Confidence 344 457799999999966 5899999987432 21235678898 799999999999998765
Q ss_pred ccCChhHHHHHHhhhccCCcchHHHHHH
Q 027130 97 IRMDTKRLCELTSAADSLQLKPLVDLTS 124 (227)
Q Consensus 97 l~id~~~L~eLi~AA~yL~I~~Lldl~c 124 (227)
+.++...+.+++.+|++++++.|.+.|+
T Consensus 63 ~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 63 LDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred eecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 2344557889999999999999998874
No 13
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.19 E-value=0.041 Score=51.81 Aligned_cols=114 Identities=14% Similarity=0.079 Sum_probs=83.3
Q ss_pred ccEEEEeCCCCEEEecHHHHhHCHHHHHHHhhcCCCCCCCc----ccccCCCCCHHHHHHHHHHHHhcCCCCCCccccch
Q 027130 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNY----AISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKS 91 (227)
Q Consensus 16 ~~i~L~SsDG~~f~V~~~~a~~S~~I~~ml~~~~~~~~~~~----~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~ 91 (227)
+.|.| ..=|.+..++.--+.||+++..|+...--.+ ... .||=| +|+...|.-++-=+++..
T Consensus 70 SDv~l-~alg~eWrlHk~yL~QS~yf~smf~Gtw~es-~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE----------- 135 (488)
T KOG4682|consen 70 SDVIL-EALGFEWRLHKPYLFQSEYFKSMFSGTWKES-SMNIIQLEIPDP-NIDVVALQVAFGSLYRDE----------- 135 (488)
T ss_pred cceeh-hhccceeeeeeeeeeccHHHHHHhccccChh-hCceEEEEcCCC-cccHHHHHHHHhhhhhhh-----------
Confidence 34444 3458889999888999999999987543221 222 35666 899999998887776654
Q ss_pred hhhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCCh
Q 027130 92 FDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTE 151 (227)
Q Consensus 92 wD~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T~ 151 (227)
+.++.+.+..++.||.+|..++|++-|...+-..|+-|| +.+++....-+-.
T Consensus 136 -----veI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkt---a~~yYea~ckYgl 187 (488)
T KOG4682|consen 136 -----VEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKT---ACGYYEAACKYGL 187 (488)
T ss_pred -----eeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhh---hhHhhhhhhhhhh
Confidence 568899999999999999999999999988776666555 4444444443333
No 14
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.99 E-value=0.13 Score=48.73 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=80.1
Q ss_pred CccEEEEeCCCCEEEecHHH-HhHCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC--Cc-----
Q 027130 15 KSYIWLQTADGSIQQVEQEV-AMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS--SN----- 86 (227)
Q Consensus 15 ~~~i~L~SsDG~~f~V~~~~-a~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~--s~----- 86 (227)
...++++-.| ..|..++-+ |..|.++|.|+-. |+.++....|||. .-++..++.+++|.+.-+-.-. ..
T Consensus 44 y~DVtfvve~-~rfpAHRvILAaRs~yFRAlLYg-Gm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld 120 (620)
T KOG4350|consen 44 YSDVTFVVED-TRFPAHRVILAARSSYFRALLYG-GMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLD 120 (620)
T ss_pred ccceEEEEec-cccchhhhhHHHHHHHHHHHHhh-hhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHH
Confidence 3467887776 889999888 5689999998764 6666667789997 6779999999999988764311 00
Q ss_pred --------------cccchhhhhhccCChhHHHHHHhhhccCCcchHHHHHHHHH
Q 027130 87 --------------KERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRAL 127 (227)
Q Consensus 87 --------------~~i~~wD~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~v 127 (227)
..++++-.+. +..+.+|-++.||.+.+.+.|.++||.++
T Consensus 121 ~LslAh~Ygf~~Le~aiSeYl~~i--L~~~NvCmifdaA~ly~l~~Lt~~C~mfm 173 (620)
T KOG4350|consen 121 YLSLAHRYGFIQLETAISEYLKEI--LKNENVCMIFDAAYLYQLTDLTDYCMMFM 173 (620)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHH--HcccceeeeeeHHHHhcchHHHHHHHHHH
Confidence 1133333333 35667888999999999999999999665
No 15
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=93.20 E-value=0.53 Score=41.31 Aligned_cols=112 Identities=25% Similarity=0.304 Sum_probs=81.4
Q ss_pred CccEEEEeCCCCEEEecHHHHh-HCHHHHHHHhhcCC-CCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCccccchh
Q 027130 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGM-GSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (227)
Q Consensus 15 ~~~i~L~SsDG~~f~V~~~~a~-~S~~I~~ml~~~~~-~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~w 92 (227)
...++| ---|.+|.-+...+. +.+.++.|++..-. ...+...|=+ .-+++-+..|+.|++--...
T Consensus 4 ~~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~---------- 70 (230)
T KOG2716|consen 4 SETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD---------- 70 (230)
T ss_pred cceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc----------
Confidence 345665 456889998888865 68899998875421 2222344666 58999999999999854322
Q ss_pred hhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCC-C----HHHHHhhc
Q 027130 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGK-T----PEEIREIF 143 (227)
Q Consensus 93 D~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGK-T----~eEIR~~f 143 (227)
+--+...|-+|+.-|.|..+.+|+++|..+++..+++. + ..|..+++
T Consensus 71 ----LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~~~~~~~~~e~~~ii 122 (230)
T KOG2716|consen 71 ----LPESEKELKELLREAEFYLLDGLVELCQSAIARLIRGYITPIESSEELLQII 122 (230)
T ss_pred ----CccchHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCccccccchHHHHHHh
Confidence 22356789999999999999999999999999988775 3 35554443
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=90.81 E-value=0.49 Score=48.53 Aligned_cols=115 Identities=22% Similarity=0.216 Sum_probs=77.3
Q ss_pred CCCCCccEEEEeCCCCEEEecHHHHh-HCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccc
Q 027130 11 PEMMKSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKER 89 (227)
Q Consensus 11 pe~~~~~i~L~SsDG~~f~V~~~~a~-~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i 89 (227)
|+.+...|++ .||++|..+.-.+. .+.++..|+.-..+..+.-.+--.| ++++.|+-|++|++.-..
T Consensus 708 ~e~~d~~i~~--KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p--~~~e~m~ivLdylYs~d~-------- 775 (1267)
T KOG0783|consen 708 EETMDTVIKL--KDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSP--LTVEHMSIVLDYLYSDDK-------- 775 (1267)
T ss_pred ccceeEEEEe--cCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCc--chHHHHHHHHHHHHccch--------
Confidence 5544444555 59999999887743 5778877776544432111112233 679999999999874321
Q ss_pred chhhhhhcc--CChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHh
Q 027130 90 KSFDEKFIR--MDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (227)
Q Consensus 90 ~~wD~eFl~--id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~ 141 (227)
..|++ -+.+-+|+++..|+-|=|..|-++|=+.+-+.+.=|+..++-+
T Consensus 776 ----~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle 825 (1267)
T KOG0783|consen 776 ----VELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE 825 (1267)
T ss_pred ----HHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence 12232 2445689999999999999999999888888777776555533
No 17
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.78 E-value=1.1 Score=38.16 Aligned_cols=54 Identities=26% Similarity=0.443 Sum_probs=35.3
Q ss_pred hhhhhccCChhHHHHHHh--------hhccC--CcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 027130 92 FDEKFIRMDTKRLCELTS--------AADSL--QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (227)
Q Consensus 92 wD~eFl~id~~~L~eLi~--------AA~yL--~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T 150 (227)
|+..=++-....+++... |||.- +|--|.+++|+.. |.-+.+||+.||||+||.
T Consensus 137 ~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 137 WELAKIQETDPQVFEKKVHLEKTMAEAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 443333334445555444 44432 6667777777654 788999999999999874
No 18
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=82.06 E-value=1.1 Score=37.92 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=25.1
Q ss_pred CcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCCh
Q 027130 115 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTE 151 (227)
Q Consensus 115 ~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T~ 151 (227)
+|.-|.++.|+.. +.-++|||+.||||.|+..
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld~ 205 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLDE 205 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchhh
Confidence 5666777777554 6789999999999998753
No 19
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=81.97 E-value=2.4 Score=38.98 Aligned_cols=91 Identities=8% Similarity=0.086 Sum_probs=63.0
Q ss_pred CCEEEecHHHHh-HCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCccccchhhhhhccCChhH
Q 027130 25 GSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 103 (227)
Q Consensus 25 G~~f~V~~~~a~-~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~wD~eFl~id~~~ 103 (227)
.+.|..++..+. ..++++..+...-.+.....+|+|.+.-+=.|++=+.+|++... -.++.+.
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~----------------p~l~~~N 76 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEP----------------PSLTPSN 76 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCC----------------CcCCcCc
Confidence 367888999864 58899988753100111244566643456677777777777621 1356777
Q ss_pred HHHHHhhhccCCcchHHHHHHHHHHHHH
Q 027130 104 LCELTSAADSLQLKPLVDLTSRALARII 131 (227)
Q Consensus 104 L~eLi~AA~yL~I~~Lldl~c~~vA~~i 131 (227)
+.-++.-|+||+|++|++.|..++...+
T Consensus 77 vvsIliSS~FL~M~~Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMESLVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHHHHHHHHHHHHHhH
Confidence 8889999999999999999998885543
No 20
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=81.26 E-value=0.86 Score=33.48 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=53.9
Q ss_pred CCCEEEecHHHHhH--CHHHHHHHhhc--CCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCccccchhhhhhccC
Q 027130 24 DGSIQQVEQEVAMF--CPLICQEVIQK--GMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRM 99 (227)
Q Consensus 24 DG~~f~V~~~~a~~--S~~I~~ml~~~--~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~wD~eFl~i 99 (227)
-|+.|.++++.+.. .+.+..++... .........+=+ +-++..++.|+.|++.. .. +..
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~-~~--------------l~~ 68 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTG-GK--------------LPI 68 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHT-SS--------------B--
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhc-Cc--------------cCC
Confidence 58999999999773 34666666642 111113445555 58999999999999985 11 111
Q ss_pred -ChhHHHHHHhhhccCCcchH-HHHH
Q 027130 100 -DTKRLCELTSAADSLQLKPL-VDLT 123 (227)
Q Consensus 100 -d~~~L~eLi~AA~yL~I~~L-ldl~ 123 (227)
+...+..|...|.|.+|+.| ++.|
T Consensus 69 ~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 69 PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CCchhHHHHHHHHHHcCCCccccCCC
Confidence 23457788999999999998 6544
No 21
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=78.52 E-value=2.5 Score=34.01 Aligned_cols=121 Identities=21% Similarity=0.317 Sum_probs=14.8
Q ss_pred CCCEEEecHHHHhHCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCccccchhhhhhccCChhH
Q 027130 24 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 103 (227)
Q Consensus 24 DG~~f~V~~~~a~~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~wD~eFl~id~~~ 103 (227)
||+.|.|...+...-+.+.+.+.- ...+| .++++++.++++|++... ..
T Consensus 1 d~e~f~vv~s~l~ll~~l~~Y~~~---------~~~~P-~~a~di~~~l~elLk~fN---------------------Sr 49 (135)
T PF07928_consen 1 DNEKFVVVGSALLLLKMLSDYLQL---------ASNFP-SLAPDILSRLLELLKLFN---------------------SR 49 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceecHHHHHHHHHHHHHHHHH---------HHHCc-hhHHHHHHHHHHHHHHHH---------------------HH
Confidence 678888888777777766654321 23477 688889998888865543 34
Q ss_pred HHHHHhhhccCCcchHHHHHHHHHHHHHhC-----CCHHHHHhhcCCCCCCChhhhhcccccCCCchhHHHhHHHHHHHH
Q 027130 104 LCELTSAADSLQLKPLVDLTSRALARIIEG-----KTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKR 178 (227)
Q Consensus 104 L~eLi~AA~yL~I~~Lldl~c~~vA~~ikG-----KT~eEIR~~f~I~~D~T~EEe~e~~~~~~~~p~~~~~~~l~~~~~ 178 (227)
.++|+..|-....-+|-..+.+.+|-..+. .-.--||..|.-- .++.. .. . -..|+.+.+.|..-+
T Consensus 50 ~~qlVLGAGA~~~agLK~IT~KhLALasq~L~~~~~lip~i~~~~~~~--~~~~~-~~-~-----~~~fd~v~~dy~~H~ 120 (135)
T PF07928_consen 50 CCQLVLGAGAMRSAGLKTITAKHLALASQSLSFIISLIPYIREFFERH--LPSKQ-QS-L-----LREFDKVKRDYQDHQ 120 (135)
T ss_dssp ------------------------------------------------------H-HH-H-----HHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCccc-ch-H-----HHHHHHHHHHHHHHH
Confidence 678888888888888877777766543221 1233445444433 11100 00 1 125667778888777
Q ss_pred HHHHHH
Q 027130 179 KELKER 184 (227)
Q Consensus 179 ~~~~~~ 184 (227)
.|+..|
T Consensus 121 ~eI~~K 126 (135)
T PF07928_consen 121 NEIFSK 126 (135)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 22
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=61.93 E-value=48 Score=32.32 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=70.2
Q ss_pred CEEEecHHHHh-HCHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCC-CCCCc----------cccchh-
Q 027130 26 SIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQV-PGSSN----------KERKSF- 92 (227)
Q Consensus 26 ~~f~V~~~~a~-~S~~I~~ml~~~~~~~~~~~~IpLp~~Vss~iL~kIieyc~~h~~-~~~s~----------~~i~~w- 92 (227)
+.+..++-+.. -|.++..|+.. +........|.+| .|..+.+...+.|++-... ....+ ..++..
T Consensus 129 q~~paHk~vla~gS~VFdaMf~g-~~a~~~s~ei~lp-dvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLe 206 (521)
T KOG2075|consen 129 QRIPAHKLVLADGSDVFDAMFYG-GLAEDASLEIRLP-DVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALE 206 (521)
T ss_pred cccchhhhhhhcchHHHHHHhcc-CcccccCceeecC-CcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHH
Confidence 77778888855 47788888764 3333236789999 8999999999988875322 11110 011222
Q ss_pred --hhhhcc---CChhHHHHHHhhhccCCcchHHHHHHHHHHHH
Q 027130 93 --DEKFIR---MDTKRLCELTSAADSLQLKPLVDLTSRALARI 130 (227)
Q Consensus 93 --D~eFl~---id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ 130 (227)
--+|++ ++...+.+|...|..++=+.|+..|.+.++..
T Consensus 207 r~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~ 249 (521)
T KOG2075|consen 207 RQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKS 249 (521)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhH
Confidence 223554 56777888888899999999999999888653
No 23
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=58.41 E-value=14 Score=32.71 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=62.1
Q ss_pred CccEEEEeCCCCEEEecHHH--HhH-CHHHHHHHhhcCCCC--CCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccc
Q 027130 15 KSYIWLQTADGSIQQVEQEV--AMF-CPLICQEVIQKGMGS--SKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKER 89 (227)
Q Consensus 15 ~~~i~L~SsDG~~f~V~~~~--a~~-S~~I~~ml~~~~~~~--~~~~~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i 89 (227)
++.|+| --.|+.|.-..+. .+. -+.+..|+...|... ++...+-| .-++.-++-|+.|+.+-.-.
T Consensus 8 ~~~vrl-nigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI--DRsp~yFepIlNyLr~Gq~~------- 77 (302)
T KOG1665|consen 8 SSMVRL-NIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI--DRSPKYFEPILNYLRDGQIP------- 77 (302)
T ss_pred hhhhee-ecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE--ccCchhhHHHHHHHhcCcee-------
Confidence 345666 3457777644333 332 346778888776332 23445556 58999999999999887632
Q ss_pred chhhhhhccCChhHHHHHHhhhccCCcchHHHHHH
Q 027130 90 KSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTS 124 (227)
Q Consensus 90 ~~wD~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c 124 (227)
..+.-.+..++.+|.|.+|-+|.+-.-
T Consensus 78 --------~~s~i~~lgvLeeArff~i~sL~~hle 104 (302)
T KOG1665|consen 78 --------SLSDIDCLGVLEEARFFQILSLKDHLE 104 (302)
T ss_pred --------ecCCccHHHHHHHhhHHhhHhHHhHHh
Confidence 234456899999999999999987543
No 24
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=57.50 E-value=30 Score=32.99 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=74.5
Q ss_pred CCCCEEEecHHHHhHCHHHHHHHhhcCCCCCCCcc---cccCCCCCHHHHHHHHHHHHhcCCCCC----C----------
Q 027130 23 ADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYA---ISLPQRVNPAMLSLILDYCRFHQVPGS----S---------- 85 (227)
Q Consensus 23 sDG~~f~V~~~~a~~S~~I~~ml~~~~~~~~~~~~---IpLp~~Vss~iL~kIieyc~~h~~~~~----s---------- 85 (227)
-......++.+.+....+++.|+..+-..++.+.. ..|| +..+.+.+.+++|++-|+.+-. +
T Consensus 298 ~~~~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~la 376 (516)
T KOG0511|consen 298 PEEDRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLA 376 (516)
T ss_pred cccccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc-hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhh
Confidence 33445788888888899999998754333222444 4588 8899999999999999987521 0
Q ss_pred -----------ccccchhhhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHh
Q 027130 86 -----------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (227)
Q Consensus 86 -----------~~~i~~wD~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ik 132 (227)
...+..|. +| +|.-.+++++.-|--+....|=..+..++|+.+.
T Consensus 377 l~~dr~Lkt~as~~itq~~-e~--id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~ 431 (516)
T KOG0511|consen 377 LADDRLLKTAASAEITQWL-EL--IDMYGVLDILEYCWDLVACRLEQFAETHEARHLL 431 (516)
T ss_pred hhhhhhhhhhhhHHHHHHH-HH--HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 01234451 11 3555688888888888888888888888887654
No 25
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=56.07 E-value=16 Score=24.76 Aligned_cols=40 Identities=35% Similarity=0.431 Sum_probs=24.9
Q ss_pred hCCCHHHHHhhcCCCCCCChhhhhcccccCCCchhHHHhHHHHHHHHHHHHHHh
Q 027130 132 EGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERE 185 (227)
Q Consensus 132 kGKT~eEIR~~f~I~~D~T~EEe~e~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 185 (227)
-|-|.+|||+++.+.++ ..+.......+.+.++.++.++-
T Consensus 13 lGfsL~eI~~~l~l~~~--------------~~~~~~~~~~~l~~~~~~i~~~i 52 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQ--------------GDPPCADRRALLEEKLEEIEEQI 52 (65)
T ss_dssp TT--HHHHHHHHHHCCS--------------HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999988763 22233334456666777776663
No 26
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.72 E-value=16 Score=30.89 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=29.1
Q ss_pred HHHHHhhhccC--CcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 027130 104 LCELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (227)
Q Consensus 104 L~eLi~AA~yL--~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T 150 (227)
+..+..|||.- +|..|..++++. -|.+.++||+.||||+||.
T Consensus 144 ~~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 144 IKIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence 34444566654 455566555543 3889999999999999874
No 27
>PRK12540 RNA polymerase sigma factor; Provisional
Probab=46.29 E-value=62 Score=26.50 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=15.7
Q ss_pred HHhCCCHHHHHhhcCCCC
Q 027130 130 IIEGKTPEEIREIFHLPD 147 (227)
Q Consensus 130 ~ikGKT~eEIR~~f~I~~ 147 (227)
.+.|.|.+||-+.+|++.
T Consensus 124 ~~~g~s~~EIA~~Lgis~ 141 (182)
T PRK12540 124 GASGFSYEDAAAICGCAV 141 (182)
T ss_pred HHcCCCHHHHHHHHCCCH
Confidence 568999999999999984
No 28
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=38.65 E-value=79 Score=30.75 Aligned_cols=70 Identities=19% Similarity=0.115 Sum_probs=41.8
Q ss_pred cccccCC-CCCHHHHHHHHHHHHhcCCCCCCcc--ccchhhhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHh
Q 027130 56 YAISLPQ-RVNPAMLSLILDYCRFHQVPGSSNK--ERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (227)
Q Consensus 56 ~~IpLp~-~Vss~iL~kIieyc~~h~~~~~s~~--~i~~wD~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ik 132 (227)
.++-+.. -+++.||+.+++.+..+-.....-- ..+---.-|+.+|....-+||.+
T Consensus 360 ~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap~i~~pc~ygid~~~~~eLia~---------------------- 417 (501)
T PRK09246 360 NVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPPVRFPNVYGIDMPTANELIAH---------------------- 417 (501)
T ss_pred eEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEccccccCcccccCCCCHHHHhhc----------------------
Confidence 3444441 2789999999999997653210000 00001112345666555577655
Q ss_pred CCCHHHHHhhcCCCC
Q 027130 133 GKTPEEIREIFHLPD 147 (227)
Q Consensus 133 GKT~eEIR~~f~I~~ 147 (227)
.+|+||||+.+|...
T Consensus 418 ~~~~e~i~~~ig~ds 432 (501)
T PRK09246 418 GRTVEEIRQIIGADG 432 (501)
T ss_pred CCCHHHHHHHhCCCe
Confidence 478899999999876
No 29
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=37.51 E-value=23 Score=29.42 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=27.2
Q ss_pred HHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 027130 106 ELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (227)
Q Consensus 106 eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T 150 (227)
.|+.||..|++.. .++.|-..+.+++.|||++++.
T Consensus 130 ~l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~~ 164 (195)
T PRK05365 130 YLILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTWK 164 (195)
T ss_pred HHHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCee
Confidence 3888999988865 2556778899999999986443
No 30
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=35.04 E-value=24 Score=28.93 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 027130 107 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (227)
Q Consensus 107 Li~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T 150 (227)
|+.||..|++.. .+|.|-..+++++.||+++++.
T Consensus 124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~~ 157 (185)
T cd02148 124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRWR 157 (185)
T ss_pred HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCeE
Confidence 888888888854 3566778899999999987553
No 31
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=31.40 E-value=1.8e+02 Score=22.11 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=38.8
Q ss_pred cEEEEe-CCCCEEEecHHHHhHCHHHHHHHhhcC--CCCCCCcccccCCCCCHHHHHHHHHHH
Q 027130 17 YIWLQT-ADGSIQQVEQEVAMFCPLICQEVIQKG--MGSSKNYAISLPQRVNPAMLSLILDYC 76 (227)
Q Consensus 17 ~i~L~S-sDG~~f~V~~~~a~~S~~I~~ml~~~~--~~~~~~~~IpLp~~Vss~iL~kIieyc 76 (227)
.+.+-. .+.+.|.|+...+. .++++.+|.... ++-..+.+|.|| -+...++.|+..+
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L~-hp~f~~LL~~aeeEfG~~~~G~l~iP--C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYLN-HPLFQELLEQAEEEFGFDQDGPLTIP--CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHcC-chhHHHHHHHHhhhcCcCCCCcEEee--CCHHHHHHHHHHh
Confidence 444444 45899999987776 566777766432 233346789998 7888888887654
No 32
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=31.36 E-value=43 Score=26.51 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=31.0
Q ss_pred HhhhccCCcchHHHHHHHHHHHHHhCC------------CHHHHHh-hcCCCCC
Q 027130 108 TSAADSLQLKPLVDLTSRALARIIEGK------------TPEEIRE-IFHLPDD 148 (227)
Q Consensus 108 i~AA~yL~I~~Lldl~c~~vA~~ikGK------------T~eEIR~-~f~I~~D 148 (227)
-.|+....++..+-.+|++||.+|+|. |+.-||. .||....
T Consensus 37 ~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 37 EDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp HHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred hHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 378899999999999999999999973 3445555 7887653
No 33
>PF15063 TC1: Thyroid cancer protein 1
Probab=31.09 E-value=31 Score=25.25 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCHHHHHhhcCCCCCCChhhhhcccccCCCchh
Q 027130 125 RALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPR 166 (227)
Q Consensus 125 ~~vA~~ikGKT~eEIR~~f~I~~D~T~EEe~e~~~~~~~~p~ 166 (227)
+.+|+++.+-.-.+++..|.-..|--.||..+++.....||.
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~~~~d~e 69 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDKKAEERARIIWECAQDPE 69 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHhhCCCHH
Confidence 457888999999999999999999999999998776666665
No 34
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=30.69 E-value=40 Score=27.41 Aligned_cols=35 Identities=34% Similarity=0.519 Sum_probs=27.2
Q ss_pred CCCHHHHHhhcCCCCCCChhhhhcccccCCCchhHHHhHHHHHHHHHHHHHHh
Q 027130 133 GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERE 185 (227)
Q Consensus 133 GKT~eEIR~~f~I~~D~T~EEe~e~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 185 (227)
|.||+|-|..||+|.|+.. .-.-||.+|..|-+.-
T Consensus 98 gmTPd~YR~KW~LP~dYPM------------------vAPnYAa~RS~LAK~m 132 (148)
T COG4957 98 GLTPDEYRAKWGLPPDYPM------------------VAPNYAAARSQLAKAM 132 (148)
T ss_pred CCCHHHHHHhcCCCCCCCc------------------cchHHHHHHHHHHHHh
Confidence 8899999999999987753 2344788898886553
No 35
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=28.65 E-value=73 Score=27.93 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=42.0
Q ss_pred ccccCCCCCHHHHHHHHHHHHhcCCCCCCccccchhhhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHH
Q 027130 57 AISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 129 (227)
Q Consensus 57 ~IpLp~~Vss~iL~kIieyc~~h~~~~~s~~~i~~wD~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~ 129 (227)
..-+. .++....--.++|.+...-+ ++.+...|.+|..-|+..+.+.|-+.|-+-+..
T Consensus 107 ~~~~d-Dad~Ea~~t~iRWIYTDEid--------------fk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a 164 (280)
T KOG4591|consen 107 ELDLD-DADFEAFHTAIRWIYTDEID--------------FKEDDEFLLELCELANRFQLELLKERCEKGLGA 164 (280)
T ss_pred hhccc-ccCHHHHHHhheeeeccccc--------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444 78888888888887654422 356777788888888888888888888777665
No 36
>PF11792 Baculo_LEF5_C: Baculoviridae late expression factor 5 C-terminal domain; InterPro: IPR021758 This C-terminal domain is likely to be a zinc-binding domain.
Probab=27.89 E-value=26 Score=22.83 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=12.0
Q ss_pred cccCChHHHHhhhc
Q 027130 197 VDERSVDDLLQFIN 210 (227)
Q Consensus 197 ~~~~~~~~~~~~~~ 210 (227)
.--|+=||.+|||.
T Consensus 22 ~Q~RAGDE~VSfI~ 35 (43)
T PF11792_consen 22 KQLRAGDEAVSFIK 35 (43)
T ss_pred hhhcccchHHHHHH
Confidence 46799999999994
No 37
>PF12556 CobS_N: Cobaltochelatase CobS subunit N terminal
Probab=25.55 E-value=40 Score=21.12 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=10.1
Q ss_pred HHhhcCCCCCCC
Q 027130 139 IREIFHLPDDLT 150 (227)
Q Consensus 139 IR~~f~I~~D~T 150 (227)
+|+.|||..|++
T Consensus 14 vre~FGiDsDm~ 25 (36)
T PF12556_consen 14 VREVFGIDSDMK 25 (36)
T ss_pred HHHhcCCCcCCe
Confidence 689999998865
No 38
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=25.35 E-value=39 Score=26.97 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=22.5
Q ss_pred HHhCCCHHHHHhhcCCCCCCChhhhhccccc--CCCch----hHHHhHHHH
Q 027130 130 IIEGKTPEEIREIFHLPDDLTEEEKLEPLKN--TTDDP----RIRLLNRLY 174 (227)
Q Consensus 130 ~ikGKT~eEIR~~f~I~~D~T~EEe~e~~~~--~~~~p----~~~~~~~l~ 174 (227)
..+|.|.+|-++++|+++..++||=.+.... ..+|| +|.+=.+.|
T Consensus 51 ~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~ 101 (127)
T PF03656_consen 51 NSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVF 101 (127)
T ss_dssp ------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHH
T ss_pred hcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHH
Confidence 4568999999999999998888876665442 23344 565544444
No 39
>PRK11053 dihydropteridine reductase; Provisional
Probab=24.92 E-value=59 Score=27.33 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=25.8
Q ss_pred HHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCC
Q 027130 104 LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPD 147 (227)
Q Consensus 104 L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~ 147 (227)
+-.|+.||..||+..- +|.|-.++.+++.|||++
T Consensus 147 ~~~lmLaA~~~Glgs~----------~i~g~~~~~v~~~l~ip~ 180 (217)
T PRK11053 147 LGNLLLGAAALGIDAT----------PIEGFDAAILDAEFGLRE 180 (217)
T ss_pred HHHHHHHHHHcCCCCC----------CcCCcCHHHHHHHhCCCC
Confidence 4477777887777432 556778999999999984
No 40
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=24.81 E-value=76 Score=24.72 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=25.6
Q ss_pred HHhhhccCCcchHHHHHH-HHHHHHHhCCCHHHHHhhcC
Q 027130 107 LTSAADSLQLKPLVDLTS-RALARIIEGKTPEEIREIFH 144 (227)
Q Consensus 107 Li~AA~yL~I~~Lldl~c-~~vA~~ikGKT~eEIR~~f~ 144 (227)
.|.-+.|-.----.-.+| ..++.+++|||.+|...+-.
T Consensus 50 ~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl~ea~~i~~ 88 (124)
T TIGR01999 50 IIEDAKFKTFGCGSAIASSSLATELIKGKSLEEALKIKN 88 (124)
T ss_pred eEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHhccH
Confidence 455555555444444444 55678999999999987654
No 41
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=24.68 E-value=79 Score=27.71 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=22.8
Q ss_pred CCcccccCCCCCHHHHHHHHHHHHhcCC
Q 027130 54 KNYAISLPQRVNPAMLSLILDYCRFHQV 81 (227)
Q Consensus 54 ~~~~IpLp~~Vss~iL~kIieyc~~h~~ 81 (227)
...+.+||.++++.||++|.+|.+ +..
T Consensus 145 ~~~~~~LPkGi~~~Tl~~i~~~~~-~~~ 171 (224)
T COG4565 145 EQPPDDLPKGLDELTLQKVREALK-EPD 171 (224)
T ss_pred ccCcccCCCCcCHHHHHHHHHHHh-CcC
Confidence 456788998899999999999999 543
No 42
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=24.07 E-value=86 Score=24.35 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=25.5
Q ss_pred HHhhhccCCcchHHHHHH-HHHHHHHhCCCHHHHHhhcC
Q 027130 107 LTSAADSLQLKPLVDLTS-RALARIIEGKTPEEIREIFH 144 (227)
Q Consensus 107 Li~AA~yL~I~~Lldl~c-~~vA~~ikGKT~eEIR~~f~ 144 (227)
.|.-+.|-.---.+-.+| ..++.+++|||++|..++..
T Consensus 46 ~I~d~~f~~~GC~is~Asas~~~e~i~Gk~l~ea~~i~~ 84 (121)
T TIGR03419 46 IIKDVKFKTFGCGAAIASSSMATEMIKGKTLEEAWELTN 84 (121)
T ss_pred EEEEEEEEEeccHHHHHHHHHHHHHHcCCCHHHHHHhhh
Confidence 455555655544454444 45678999999999887643
No 43
>PRK11325 scaffold protein; Provisional
Probab=23.99 E-value=79 Score=24.81 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=25.6
Q ss_pred HHhhhccCCcchHHHHHH-HHHHHHHhCCCHHHHHhhcC
Q 027130 107 LTSAADSLQLKPLVDLTS-RALARIIEGKTPEEIREIFH 144 (227)
Q Consensus 107 Li~AA~yL~I~~Lldl~c-~~vA~~ikGKT~eEIR~~f~ 144 (227)
.|.-+.|-.----.-.+| ..++.+++|||++|.+.+-+
T Consensus 52 ~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~ 90 (127)
T PRK11325 52 IIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKN 90 (127)
T ss_pred eEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCH
Confidence 455555655554555554 45678999999999987644
No 44
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=23.85 E-value=70 Score=18.89 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCHHHHHhhcC
Q 027130 124 SRALARIIEGKTPEEIREIFH 144 (227)
Q Consensus 124 c~~vA~~ikGKT~eEIR~~f~ 144 (227)
-..||..+.++|+.+++..+.
T Consensus 22 w~~Ia~~~~~rs~~~~~~~~~ 42 (45)
T cd00167 22 WEKIAKELPGRTPKQCRERWR 42 (45)
T ss_pred HHHHHhHcCCCCHHHHHHHHH
Confidence 356888888899999988663
No 45
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.64 E-value=1.5e+02 Score=23.78 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=21.8
Q ss_pred hCCCHHHHHhhcCCCCCCChhhhhccc
Q 027130 132 EGKTPEEIREIFHLPDDLTEEEKLEPL 158 (227)
Q Consensus 132 kGKT~eEIR~~f~I~~D~T~EEe~e~~ 158 (227)
-|.|.+|-++++||.+++..||=++..
T Consensus 54 ~~iTlqEa~qILnV~~~ln~eei~k~y 80 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKEPLNREEIEKRY 80 (132)
T ss_pred ccccHHHHhhHhCCCCCCCHHHHHHHH
Confidence 456899999999999988888766543
No 46
>KOG2609 consensus Cyclin D-interacting protein GCIP [Cell cycle control, cell division, chromosome partitioning; RNA processing and modification]
Probab=23.58 E-value=67 Score=28.10 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=35.8
Q ss_pred cCCCchhHHHhHHHHHHHHHHHHHHhhhccccchhhhcccCChHHHHhhhcCCCCc
Q 027130 160 NTTDDPRIRLLNRLYAKKRKELKEREKLKNVESEEERVDERSVDDLLQFINGGERG 215 (227)
Q Consensus 160 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (227)
-++..|.-.++|+|-...-+++|+|.+..-+..-. =|..++|||..|.-
T Consensus 154 ~~t~k~~~~~idKl~~~L~~q~kkR~k~srRR~~n-------~d~~idfINerN~k 202 (228)
T KOG2609|consen 154 HGTHKPDTEAIDKLVKDLEKQIKKRYKYSRRRMYN-------EDADIDFINERNKK 202 (228)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-------cccchhHHHHhHHH
Confidence 35888999999999988999999997654443222 13445999997753
No 47
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.74 E-value=59 Score=25.50 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=29.9
Q ss_pred ChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChh
Q 027130 100 DTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEE 152 (227)
Q Consensus 100 d~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~T~E 152 (227)
++...+.++..+..|++.+ ++|+.+|+ .|||.++++-+
T Consensus 52 ~~~~~l~~l~~~~s~g~~p---~AC~~va~------------~~gi~d~l~~~ 89 (113)
T COG3370 52 NDGDSLKMLQELRSLGIKP---LACKVVAE------------NLGIEDELIFL 89 (113)
T ss_pred cchHHHHHHHHHHHcCCcc---hHHHHHHH------------hcCCcHHHHHh
Confidence 4555688999999999987 57999998 78888765543
No 48
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=22.38 E-value=1e+02 Score=23.97 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHh
Q 027130 120 VDLTSRALARIIEGKTPEEIRE 141 (227)
Q Consensus 120 ldl~c~~vA~~ikGKT~eEIR~ 141 (227)
.-.++..++.+++|||.+|+.+
T Consensus 64 ~~Asas~~~~~i~gk~l~ea~~ 85 (126)
T PF01592_consen 64 SIASASMMCELIKGKTLEEALK 85 (126)
T ss_dssp HHHHHHHHHHHHTTSBHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHH
Confidence 3455566788999999999864
No 49
>cd02140 Nitroreductase_4 Nitroreductase-like family 4. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=22.28 E-value=60 Score=26.72 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=25.6
Q ss_pred HHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCC
Q 027130 104 LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDL 149 (227)
Q Consensus 104 L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~~f~I~~D~ 149 (227)
+-.|+.||..+++-.-+. .. .....+.+|+.|||++++
T Consensus 127 ~~nl~LaA~~~GlGs~~~------~~--~~~~~~~v~~~l~ip~~~ 164 (192)
T cd02140 127 QIAVWTALAAEGIGANLQ------HY--NPLIDEEVAKKWNIPSNW 164 (192)
T ss_pred HHHHHHHHHhCCCcccHH------Hh--CccCCHHHHHhcCCCccc
Confidence 458899999999865211 00 012358999999999754
No 50
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=22.04 E-value=1.1e+02 Score=25.37 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhh
Q 027130 120 VDLTSRALARIIEGKTPEEIREI 142 (227)
Q Consensus 120 ldl~c~~vA~~ikGKT~eEIR~~ 142 (227)
++.+-+++...=+|||+.|||+.
T Consensus 118 l~ia~~a~~~~~~Gks~~eIR~~ 140 (158)
T PF13798_consen 118 LDIAVQAVQMYQEGKSPKEIRQY 140 (158)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 34455555556679999999984
No 51
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=21.91 E-value=82 Score=18.85 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 027130 125 RALARIIEGKTPEEIREIFH 144 (227)
Q Consensus 125 ~~vA~~ikGKT~eEIR~~f~ 144 (227)
..||..+.++|+.+++..|.
T Consensus 25 ~~Ia~~~~~rt~~~~~~~~~ 44 (49)
T smart00717 25 EKIAKELPGRTAEQCRERWN 44 (49)
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 55788888999999988664
No 52
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=20.58 E-value=2.3e+02 Score=17.76 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=24.7
Q ss_pred HHHHHHhhhccCCcchHHHHHHHHHHHHHh-CCCHHHHHhhc
Q 027130 103 RLCELTSAADSLQLKPLVDLTSRALARIIE-GKTPEEIREIF 143 (227)
Q Consensus 103 ~L~eLi~AA~yL~I~~Lldl~c~~vA~~ik-GKT~eEIR~~f 143 (227)
+---|+.|..-++-. --..||..+. |+|+.++|..|
T Consensus 8 E~~~l~~~v~~~g~~-----~W~~Ia~~~~~~Rt~~qc~~~~ 44 (48)
T PF00249_consen 8 EDEKLLEAVKKYGKD-----NWKKIAKRMPGGRTAKQCRSRY 44 (48)
T ss_dssp HHHHHHHHHHHSTTT-----HHHHHHHHHSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-----HHHHHHHHcCCCCCHHHHHHHH
Confidence 333445555555554 4567888888 99999999865
No 53
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=20.20 E-value=2.1e+02 Score=27.76 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCc-c-ccchhhhhhccCChhHHHHHHhhhccCCcchHHHHHHHHHHHHHhCCCHHHHHh
Q 027130 64 VNPAMLSLILDYCRFHQVPGSSN-K-ERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (227)
Q Consensus 64 Vss~iL~kIieyc~~h~~~~~s~-~-~i~~wD~eFl~id~~~L~eLi~AA~yL~I~~Lldl~c~~vA~~ikGKT~eEIR~ 141 (227)
+++.||..+++.++.+-.....- . .-+.--.-|..+|.....+|+.+ ++|++|||+
T Consensus 371 ~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~----------------------~~~~~ei~~ 428 (479)
T PRK09123 371 VRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAA----------------------THSLEEMAE 428 (479)
T ss_pred CchHHHHHHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHc----------------------CCCHHHHHH
Confidence 78999999999998764321000 0 00011122344444333344333 478999999
Q ss_pred hcCCCC
Q 027130 142 IFHLPD 147 (227)
Q Consensus 142 ~f~I~~ 147 (227)
.+|...
T Consensus 429 ~igads 434 (479)
T PRK09123 429 YIGADS 434 (479)
T ss_pred HhCCCe
Confidence 999876
Done!