BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027131
MSLLRNAIKSSVSLRTIKPIHSLPSLLRQSPKHFSTETEAPPPPPPNDASIDLFLQTPTK
GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAF
RLIGRKGRLYRLERAEQSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSIS
FMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRVLQ

High Scoring Gene Products

Symbol, full name Information P value
AT5G02740 protein from Arabidopsis thaliana 4.1e-49

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027131
        (227 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2151226 - symbol:AT5G02740 species:3702 "Arabi...   512  4.1e-49   1


>TAIR|locus:2151226 [details] [associations]
            symbol:AT5G02740 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=ISM]
            InterPro:IPR012677 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BT029370
            IPI:IPI00547790 RefSeq:NP_568106.1 UniGene:At.33372
            ProteinModelPortal:A0JQ00 SMR:A0JQ00 STRING:A0JQ00 PaxDb:A0JQ00
            PRIDE:A0JQ00 EnsemblPlants:AT5G02740.1 GeneID:831811
            KEGG:ath:AT5G02740 TAIR:At5g02740 eggNOG:NOG305114
            HOGENOM:HOG000234979 InParanoid:A0JQ00 OMA:DIERFLC PhylomeDB:A0JQ00
            ProtClustDB:CLSN2689414 Genevestigator:A0JQ00 Uniprot:A0JQ00
        Length = 228

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 112/231 (48%), Positives = 150/231 (64%)

Query:     1 MSLLRNAIKSSVSLRTIKPIHSLPSL--LRQSPKHFSTETEAXXXXXXNDASIDLFLQTP 58
             MS+ R+AI+SS+ LR + P  S  SL  L++  K  ST TE                 +P
Sbjct:     1 MSITRSAIRSSLCLRKLDPEISRSSLPFLQEWRKCLSTATEQPPPASPLPPPPG---GSP 57

Query:    59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR--NYMPFAMMMQFPSFSAY 116
              +G FYGK  G S+  LK+DI+N+LEGC+LT DDLK NY R  N  P A+ +QFPS SAY
Sbjct:    58 GEGRFYGKFSGFSKHALKTDIMNVLEGCSLTSDDLKFNYPRGGNLTPAAVFVQFPSLSAY 117

Query:   117 DNAFRLIGRKGRLYRLERAEQSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEA 176
             D A R I +KG+LYRLE+A +++WD ++PY GK V L  +P  A+ +D++RFLSGC Y  
Sbjct:   118 DKALRNIAKKGKLYRLEKAARAQWDPIVPYEGKVVALHGIPVNAITDDIDRFLSGCLYYP 177

Query:   177 SSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRVLQ 227
              SI F+  Q L  S + A VRF SQTQAM+A+I KNR F LN +++++VLQ
Sbjct:   178 GSIQFLTVQGLGTSKRVALVRFTSQTQAMNAYITKNRNFLLNQRITLQVLQ 228


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       221   0.00095  112 3  11 22  0.49    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  168 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.03u 0.11s 19.14t   Elapsed:  00:00:00
  Total cpu time:  19.03u 0.11s 19.14t   Elapsed:  00:00:00
  Start:  Fri May 10 01:08:59 2013   End:  Fri May 10 01:08:59 2013

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