Query 027131
Match_columns 227
No_of_seqs 98 out of 100
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4211 Splicing factor hnRNP- 100.0 6E-41 1.3E-45 317.1 14.4 146 62-214 10-168 (510)
2 KOG4211 Splicing factor hnRNP- 100.0 1E-28 2.3E-33 234.2 12.5 148 63-215 104-345 (510)
3 KOG1365 RNA-binding protein Fu 99.9 1.4E-26 3E-31 215.4 8.0 160 59-221 158-354 (508)
4 KOG1365 RNA-binding protein Fu 99.9 2.9E-23 6.3E-28 193.4 12.7 153 60-213 58-228 (508)
5 KOG4307 RNA binding protein RB 99.8 1.2E-18 2.6E-23 171.3 12.0 76 150-226 869-944 (944)
6 TIGR01622 SF-CC1 splicing fact 99.8 3.7E-17 8E-22 152.7 17.2 160 64-225 91-262 (457)
7 TIGR01659 sex-lethal sex-letha 99.7 1.6E-16 3.4E-21 147.4 16.6 155 65-225 110-271 (346)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.8E-16 8.2E-21 140.6 17.0 150 64-219 5-159 (352)
9 TIGR01628 PABP-1234 polyadenyl 99.7 1.5E-15 3.3E-20 146.3 16.0 155 64-223 2-161 (562)
10 TIGR01642 U2AF_lg U2 snRNP aux 99.7 7.7E-15 1.7E-19 138.6 18.6 160 65-225 178-371 (509)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.2E-14 2.5E-19 131.0 17.2 158 65-224 92-344 (352)
12 TIGR01628 PABP-1234 polyadenyl 99.6 1.2E-14 2.6E-19 140.1 16.5 159 65-226 181-361 (562)
13 TIGR01645 half-pint poly-U bin 99.6 1.4E-14 2.9E-19 143.1 16.0 160 62-223 106-278 (612)
14 KOG4307 RNA binding protein RB 99.6 8.7E-16 1.9E-20 151.4 7.5 166 60-226 309-511 (944)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.4E-12 3E-17 124.8 18.6 155 65-225 278-474 (481)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 7.4E-13 1.6E-17 126.6 16.4 151 65-225 5-168 (481)
17 TIGR01648 hnRNP-R-Q heterogene 99.5 1.4E-12 2.9E-17 128.4 15.6 150 65-224 141-302 (578)
18 TIGR01648 hnRNP-R-Q heterogene 99.4 5E-12 1.1E-16 124.4 14.7 137 65-212 61-203 (578)
19 KOG0127 Nucleolar protein fibr 99.4 3.4E-12 7.4E-17 123.8 11.9 145 65-211 120-354 (678)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.4 1.1E-11 2.3E-16 117.3 15.0 159 64-224 297-497 (509)
21 PF14259 RRM_6: RNA recognitio 99.3 1.8E-11 3.8E-16 86.4 7.8 69 151-221 1-69 (70)
22 TIGR01622 SF-CC1 splicing fact 99.3 3.5E-10 7.5E-15 105.9 18.1 157 63-225 187-444 (457)
23 PF00076 RRM_1: RNA recognitio 99.1 2.5E-10 5.5E-15 79.1 7.3 69 151-221 1-69 (70)
24 PF14259 RRM_6: RNA recognitio 99.1 2.9E-10 6.3E-15 80.2 7.6 59 65-124 1-60 (70)
25 KOG0144 RNA-binding protein CU 99.0 1.7E-09 3.6E-14 103.0 10.3 145 65-215 37-189 (510)
26 KOG0127 Nucleolar protein fibr 99.0 3.4E-09 7.4E-14 103.3 12.3 156 65-222 8-189 (678)
27 KOG0123 Polyadenylate-binding 98.9 2.2E-08 4.9E-13 94.0 13.8 137 72-223 8-147 (369)
28 cd00590 RRM RRM (RNA recogniti 98.9 9.3E-09 2E-13 69.8 7.5 73 150-224 1-73 (74)
29 KOG0110 RNA-binding protein (R 98.8 1.4E-08 3E-13 101.0 10.2 152 65-219 518-684 (725)
30 smart00360 RRM RNA recognition 98.8 9.8E-09 2.1E-13 69.0 6.2 70 153-223 1-70 (71)
31 smart00362 RRM_2 RNA recogniti 98.8 1.3E-08 2.8E-13 68.7 6.5 71 150-223 1-71 (72)
32 PLN03134 glycine-rich RNA-bind 98.8 2.8E-08 6E-13 81.7 8.9 77 148-225 34-110 (144)
33 KOG0131 Splicing factor 3b, su 98.8 4.5E-08 9.8E-13 84.5 10.5 161 59-223 6-171 (203)
34 KOG0123 Polyadenylate-binding 98.8 7.2E-08 1.6E-12 90.6 12.1 151 65-221 79-238 (369)
35 KOG0117 Heterogeneous nuclear 98.6 4.1E-07 8.9E-12 87.2 12.9 149 65-223 86-325 (506)
36 PF00076 RRM_1: RNA recognitio 98.6 1.4E-07 3E-12 65.2 7.0 58 65-123 1-59 (70)
37 PLN03120 nucleic acid binding 98.5 3.1E-07 6.8E-12 82.9 7.7 72 148-224 4-75 (260)
38 PLN03134 glycine-rich RNA-bind 98.5 1.3E-06 2.8E-11 71.8 10.3 75 60-135 32-111 (144)
39 COG0724 RNA-binding proteins ( 98.5 2.1E-06 4.5E-11 70.4 11.4 147 63-211 116-287 (306)
40 TIGR01659 sex-lethal sex-letha 98.4 6.7E-07 1.5E-11 83.3 8.4 78 146-224 105-182 (346)
41 cd00590 RRM RRM (RNA recogniti 98.4 1.7E-06 3.7E-11 58.5 8.0 58 65-123 2-60 (74)
42 COG0724 RNA-binding proteins ( 98.4 1.1E-06 2.3E-11 72.2 7.9 77 148-225 115-191 (306)
43 PLN03121 nucleic acid binding 98.4 8.5E-07 1.8E-11 79.4 7.7 73 146-223 3-75 (243)
44 KOG0145 RNA-binding protein EL 98.4 4.5E-06 9.7E-11 76.1 12.4 159 60-223 39-203 (360)
45 KOG1548 Transcription elongati 98.4 8.2E-06 1.8E-10 76.3 13.5 154 65-223 137-346 (382)
46 KOG0148 Apoptosis-promoting RN 98.3 2.9E-05 6.4E-10 70.9 15.6 149 65-221 65-230 (321)
47 PLN03120 nucleic acid binding 98.3 2.7E-06 5.9E-11 76.9 8.0 71 64-136 6-78 (260)
48 smart00362 RRM_2 RNA recogniti 98.2 8E-06 1.7E-10 54.9 7.3 58 65-123 2-59 (72)
49 KOG0106 Alternative splicing f 98.2 3.6E-06 7.8E-11 74.3 6.9 141 65-223 4-165 (216)
50 KOG4205 RNA-binding protein mu 98.2 5.3E-06 1.1E-10 76.7 7.9 157 65-224 9-171 (311)
51 smart00360 RRM RNA recognition 98.2 6.8E-06 1.5E-10 54.9 6.4 56 67-123 1-58 (71)
52 TIGR01645 half-pint poly-U bin 98.2 4.1E-06 8.9E-11 83.5 7.3 76 148-224 107-182 (612)
53 PLN03121 nucleic acid binding 98.1 9.3E-06 2E-10 72.8 8.0 70 65-136 8-79 (243)
54 KOG1457 RNA binding protein (c 98.0 0.00022 4.7E-09 64.0 13.4 148 61-217 32-274 (284)
55 KOG0125 Ataxin 2-binding prote 97.9 5.8E-05 1.2E-09 70.4 9.2 73 65-138 99-174 (376)
56 KOG0147 Transcriptional coacti 97.9 3.4E-05 7.3E-10 75.5 7.5 148 67-217 184-345 (549)
57 KOG0108 mRNA cleavage and poly 97.8 4.9E-05 1.1E-09 73.2 7.1 68 149-217 19-86 (435)
58 KOG0145 RNA-binding protein EL 97.8 0.00043 9.3E-09 63.4 12.6 151 65-218 130-347 (360)
59 smart00361 RRM_1 RNA recogniti 97.7 7.7E-05 1.7E-09 53.5 5.7 61 162-223 2-69 (70)
60 KOG0128 RNA-binding protein SA 97.7 5.2E-06 1.1E-10 84.5 -0.9 124 65-209 670-795 (881)
61 KOG0533 RRM motif-containing p 97.6 0.00015 3.3E-09 65.1 6.3 69 150-220 85-153 (243)
62 KOG0114 Predicted RNA-binding 97.6 0.00045 9.7E-09 55.6 8.3 67 148-218 18-84 (124)
63 KOG0122 Translation initiation 97.6 0.0003 6.5E-09 63.5 8.0 77 146-225 187-263 (270)
64 KOG0110 RNA-binding protein (R 97.6 0.00055 1.2E-08 68.9 10.7 167 52-225 376-594 (725)
65 KOG0129 Predicted RNA-binding 97.5 0.0026 5.6E-08 62.3 14.2 147 60-210 254-432 (520)
66 KOG0114 Predicted RNA-binding 97.5 0.00038 8.3E-09 56.0 6.7 66 65-132 21-89 (124)
67 KOG0122 Translation initiation 97.4 0.0011 2.4E-08 59.8 9.0 64 61-125 188-254 (270)
68 KOG0105 Alternative splicing f 97.3 0.0024 5.2E-08 56.1 10.0 136 65-212 9-171 (241)
69 KOG4212 RNA-binding protein hn 97.2 0.0094 2E-07 58.0 13.5 157 65-225 47-290 (608)
70 KOG0107 Alternative splicing f 97.1 0.001 2.3E-08 57.5 5.9 69 149-224 11-80 (195)
71 KOG0108 mRNA cleavage and poly 97.1 0.0015 3.3E-08 63.1 7.3 69 63-132 19-92 (435)
72 KOG1190 Polypyrimidine tract-b 97.1 0.017 3.7E-07 55.7 14.1 159 53-221 289-482 (492)
73 PF08777 RRM_3: RNA binding mo 97.1 0.002 4.3E-08 50.7 6.6 72 148-226 1-77 (105)
74 KOG0121 Nuclear cap-binding pr 97.0 0.0017 3.7E-08 54.0 6.0 62 63-125 37-101 (153)
75 KOG0117 Heterogeneous nuclear 96.9 0.0059 1.3E-07 59.2 9.6 73 140-213 75-147 (506)
76 KOG4207 Predicted splicing fac 96.9 0.0018 4E-08 57.5 5.4 72 60-132 11-87 (256)
77 KOG0130 RNA-binding protein RB 96.9 0.0026 5.6E-08 53.4 5.9 81 142-223 66-146 (170)
78 PF13893 RRM_5: RNA recognitio 96.8 0.0069 1.5E-07 41.0 6.8 34 191-224 21-54 (56)
79 KOG4207 Predicted splicing fac 96.8 0.0018 3.9E-08 57.6 4.6 79 146-225 10-89 (256)
80 KOG0533 RRM motif-containing p 96.7 0.005 1.1E-07 55.4 7.2 77 59-136 80-160 (243)
81 KOG0107 Alternative splicing f 96.7 0.0048 1E-07 53.5 6.5 68 65-136 13-83 (195)
82 KOG1190 Polypyrimidine tract-b 96.6 0.0046 1E-07 59.5 6.5 151 65-225 31-222 (492)
83 KOG0149 Predicted RNA-binding 96.6 0.0038 8.3E-08 56.1 5.5 56 65-121 15-72 (247)
84 KOG4206 Spliceosomal protein s 96.5 0.035 7.5E-07 49.5 10.8 141 65-214 12-206 (221)
85 KOG4209 Splicing factor RNPS1, 96.4 0.0068 1.5E-07 54.0 6.1 73 145-218 98-170 (231)
86 KOG0130 RNA-binding protein RB 96.4 0.01 2.2E-07 49.9 6.5 69 53-122 62-133 (170)
87 PLN03213 repressor of silencin 96.2 0.015 3.3E-07 57.4 7.5 69 65-136 13-86 (759)
88 KOG4210 Nuclear localization s 96.2 0.007 1.5E-07 55.4 5.0 157 65-223 91-258 (285)
89 KOG4212 RNA-binding protein hn 96.2 0.0063 1.4E-07 59.1 4.7 68 148-216 44-111 (608)
90 KOG0147 Transcriptional coacti 96.2 0.084 1.8E-06 52.3 12.3 67 65-132 281-352 (549)
91 KOG1457 RNA binding protein (c 96.0 0.022 4.7E-07 51.4 6.7 68 149-216 35-103 (284)
92 KOG0116 RasGAP SH3 binding pro 96.0 0.014 3.1E-07 56.2 6.1 72 147-221 287-359 (419)
93 KOG0125 Ataxin 2-binding prote 95.8 0.022 4.8E-07 53.5 6.4 75 148-225 96-170 (376)
94 smart00361 RRM_1 RNA recogniti 95.7 0.045 9.9E-07 39.0 6.2 47 76-123 2-57 (70)
95 KOG4208 Nucleolar RNA-binding 95.5 0.039 8.5E-07 48.8 6.5 57 60-121 49-110 (214)
96 KOG0149 Predicted RNA-binding 95.5 0.017 3.7E-07 51.9 4.2 61 151-212 15-75 (247)
97 KOG0113 U1 small nuclear ribon 95.3 0.074 1.6E-06 49.5 7.8 58 65-123 104-163 (335)
98 KOG0121 Nuclear cap-binding pr 95.3 0.047 1E-06 45.6 5.9 74 149-223 37-110 (153)
99 KOG4209 Splicing factor RNPS1, 95.3 0.031 6.7E-07 49.8 5.1 59 65-124 104-164 (231)
100 KOG1548 Transcription elongati 95.3 0.043 9.3E-07 51.9 6.2 76 149-225 135-217 (382)
101 KOG4208 Nucleolar RNA-binding 95.2 0.051 1.1E-06 48.1 6.1 75 149-226 50-127 (214)
102 PF10309 DUF2414: Protein of u 95.1 0.056 1.2E-06 39.2 5.0 53 150-210 7-61 (62)
103 KOG0109 RNA-binding protein LA 95.0 0.1 2.2E-06 48.6 7.8 136 66-224 6-145 (346)
104 PF04059 RRM_2: RNA recognitio 95.0 0.12 2.6E-06 40.5 7.1 65 150-216 3-70 (97)
105 KOG0146 RNA-binding protein ET 95.0 0.038 8.2E-07 51.1 4.9 57 155-213 26-82 (371)
106 PF13893 RRM_5: RNA recognitio 95.0 0.078 1.7E-06 35.8 5.4 40 80-123 2-41 (56)
107 PF08777 RRM_3: RNA binding mo 94.7 0.075 1.6E-06 41.7 5.3 53 65-123 4-57 (105)
108 PF04059 RRM_2: RNA recognitio 94.7 0.11 2.5E-06 40.6 6.3 59 65-125 4-68 (97)
109 KOG0148 Apoptosis-promoting RN 94.7 0.1 2.3E-06 48.1 6.8 71 151-222 65-135 (321)
110 PLN03213 repressor of silencin 94.6 0.1 2.2E-06 51.7 7.2 70 148-223 10-82 (759)
111 KOG1456 Heterogeneous nuclear 94.5 2.1 4.6E-05 41.4 15.3 158 60-224 284-484 (494)
112 KOG0105 Alternative splicing f 94.2 0.056 1.2E-06 47.7 4.0 61 148-212 6-66 (241)
113 KOG0116 RasGAP SH3 binding pro 93.8 0.14 3E-06 49.5 6.2 56 65-121 291-348 (419)
114 KOG1995 Conserved Zn-finger pr 93.7 0.072 1.6E-06 50.3 3.8 74 149-223 67-148 (351)
115 KOG0106 Alternative splicing f 93.6 0.063 1.4E-06 47.7 3.2 61 151-220 4-64 (216)
116 KOG4205 RNA-binding protein mu 93.3 0.089 1.9E-06 49.0 3.7 142 65-213 100-256 (311)
117 KOG4206 Spliceosomal protein s 93.2 0.25 5.5E-06 44.1 6.3 70 150-223 11-84 (221)
118 PF11608 Limkain-b1: Limkain b 93.1 0.18 3.8E-06 39.2 4.5 69 150-224 4-72 (90)
119 KOG0153 Predicted RNA-binding 92.9 0.14 3.1E-06 48.4 4.6 57 149-212 229-285 (377)
120 KOG0126 Predicted RNA-binding 92.3 0.044 9.5E-07 48.1 0.3 74 147-221 34-107 (219)
121 KOG0144 RNA-binding protein CU 92.1 0.13 2.8E-06 50.1 3.2 60 59-121 123-183 (510)
122 KOG0226 RNA-binding proteins [ 91.2 0.33 7.2E-06 44.5 4.6 122 98-224 134-265 (290)
123 PF14605 Nup35_RRM_2: Nup53/35 90.4 0.34 7.4E-06 33.5 3.2 52 63-120 2-53 (53)
124 KOG4849 mRNA cleavage factor I 89.1 0.53 1.1E-05 45.1 4.3 66 59-124 76-145 (498)
125 PF14605 Nup35_RRM_2: Nup53/35 88.5 0.92 2E-05 31.3 4.2 51 150-208 3-53 (53)
126 KOG0113 U1 small nuclear ribon 87.9 2.3 4.9E-05 39.9 7.5 73 149-222 102-174 (335)
127 KOG0124 Polypyrimidine tract-b 87.8 2.3 4.9E-05 41.2 7.6 144 61-208 111-269 (544)
128 KOG0151 Predicted splicing reg 87.8 2.9 6.2E-05 43.3 8.7 68 65-135 177-249 (877)
129 KOG0126 Predicted RNA-binding 87.4 0.22 4.7E-06 43.8 0.6 77 59-136 32-113 (219)
130 KOG1995 Conserved Zn-finger pr 86.9 0.82 1.8E-05 43.4 4.1 57 65-121 69-134 (351)
131 PF10309 DUF2414: Protein of u 86.9 2.4 5.2E-05 30.7 5.7 54 65-122 8-61 (62)
132 KOG2202 U2 snRNP splicing fact 85.3 0.49 1.1E-05 43.1 1.8 40 184-223 103-142 (260)
133 KOG2591 c-Mpl binding protein, 83.9 3.2 6.9E-05 41.9 6.8 61 60-124 172-233 (684)
134 KOG1456 Heterogeneous nuclear 80.8 5.8 0.00013 38.5 7.0 60 65-124 409-468 (494)
135 KOG0153 Predicted RNA-binding 79.9 4.3 9.2E-05 38.8 5.8 60 57-121 222-282 (377)
136 PF05172 Nup35_RRM: Nup53/35/4 79.8 3 6.4E-05 32.8 4.0 67 148-218 6-81 (100)
137 KOG0131 Splicing factor 3b, su 77.6 3.3 7.2E-05 36.4 4.0 75 148-223 9-83 (203)
138 PF03468 XS: XS domain; Inter 77.5 1.8 3.8E-05 34.8 2.2 49 150-202 10-67 (116)
139 KOG0146 RNA-binding protein ET 77.2 4.4 9.6E-05 37.8 4.9 66 148-214 285-350 (371)
140 KOG0132 RNA polymerase II C-te 76.2 6.8 0.00015 40.9 6.4 116 59-182 415-540 (894)
141 KOG4661 Hsp27-ERE-TATA-binding 75.2 24 0.00052 36.2 9.7 74 65-139 408-486 (940)
142 KOG0115 RNA-binding protein p5 74.3 4.8 0.0001 37.0 4.3 67 149-218 32-100 (275)
143 KOG2591 c-Mpl binding protein, 74.2 8 0.00017 39.2 6.1 130 72-212 97-233 (684)
144 PF11608 Limkain-b1: Limkain b 71.3 8.4 0.00018 30.0 4.4 51 65-123 5-59 (90)
145 PF05172 Nup35_RRM: Nup53/35/4 70.2 7.2 0.00016 30.6 4.0 66 59-125 3-76 (100)
146 KOG0132 RNA polymerase II C-te 69.7 9.7 0.00021 39.9 5.7 68 149-223 422-489 (894)
147 KOG0120 Splicing factor U2AF, 68.5 8.8 0.00019 38.2 5.0 59 163-222 424-485 (500)
148 KOG4660 Protein Mei2, essentia 67.6 12 0.00027 37.5 5.8 59 60-122 73-131 (549)
149 TIGR03047 PS_II_psb28 photosys 64.5 10 0.00022 30.5 3.8 42 80-121 1-43 (109)
150 KOG0128 RNA-binding protein SA 62.9 5.5 0.00012 41.8 2.5 60 61-121 735-795 (881)
151 CHL00128 psbW photosystem II p 61.7 11 0.00024 30.5 3.6 42 80-121 4-46 (113)
152 KOG0120 Splicing factor U2AF, 60.6 30 0.00064 34.6 7.0 155 65-223 178-363 (500)
153 PF08952 DUF1866: Domain of un 59.9 13 0.00029 31.3 3.9 52 164-225 52-103 (146)
154 KOG4660 Protein Mei2, essentia 59.7 7.8 0.00017 38.8 2.9 69 147-221 74-142 (549)
155 KOG1996 mRNA splicing factor [ 59.1 8.8 0.00019 36.2 2.9 28 194-221 332-359 (378)
156 PRK13610 photosystem II reacti 59.1 9.6 0.00021 30.9 2.8 40 79-118 9-49 (113)
157 PF04672 Methyltransf_19: S-ad 58.0 6 0.00013 36.3 1.6 30 148-183 211-240 (267)
158 KOG0124 Polypyrimidine tract-b 58.0 17 0.00037 35.3 4.7 72 150-222 115-186 (544)
159 KOG0804 Cytoplasmic Zn-finger 57.8 46 0.001 33.0 7.7 66 148-215 74-139 (493)
160 PF08675 RNA_bind: RNA binding 57.3 74 0.0016 24.7 7.3 56 148-213 9-64 (87)
161 PLN00039 photosystem II reacti 55.8 12 0.00026 30.2 2.9 40 80-119 3-43 (111)
162 PF08675 RNA_bind: RNA binding 54.3 95 0.0021 24.1 7.4 56 59-124 8-63 (87)
163 PF14111 DUF4283: Domain of un 52.0 1.8 4E-05 34.4 -2.4 99 65-170 21-126 (153)
164 cd06398 PB1_Joka2 The PB1 doma 51.4 52 0.0011 25.3 5.7 49 69-123 24-73 (91)
165 PF03468 XS: XS domain; Inter 49.9 14 0.00031 29.5 2.5 49 74-124 29-78 (116)
166 KOG0804 Cytoplasmic Zn-finger 49.4 39 0.00085 33.5 5.7 54 66-121 78-133 (493)
167 PRK13611 photosystem II reacti 49.0 16 0.00035 29.2 2.6 36 80-115 4-39 (104)
168 PRK13612 photosystem II reacti 48.9 13 0.00028 30.1 2.0 40 79-118 5-45 (113)
169 COG2451 Ribosomal protein L35A 48.2 29 0.00063 27.4 3.8 81 89-172 8-98 (100)
170 KOG0111 Cyclophilin-type pepti 48.0 24 0.00052 32.2 3.8 67 147-214 9-75 (298)
171 PF11767 SET_assoc: Histone ly 48.0 63 0.0014 23.5 5.4 55 159-223 11-65 (66)
172 smart00666 PB1 PB1 domain. Pho 46.9 95 0.0021 22.1 6.3 54 65-124 15-69 (81)
173 KOG0129 Predicted RNA-binding 45.5 37 0.00079 34.0 4.9 57 65-121 373-431 (520)
174 PF07292 NID: Nmi/IFP 35 domai 43.2 81 0.0017 24.3 5.5 63 106-168 1-72 (88)
175 PF03912 Psb28: Psb28 protein; 43.0 11 0.00024 30.3 0.8 41 80-120 1-42 (108)
176 KOG0415 Predicted peptidyl pro 42.8 44 0.00096 32.4 4.9 57 66-123 243-301 (479)
177 TIGR03047 PS_II_psb28 photosys 42.4 47 0.001 26.8 4.3 34 167-202 2-36 (109)
178 KOG4210 Nuclear localization s 42.4 14 0.00031 33.8 1.6 70 66-135 189-261 (285)
179 PF04847 Calcipressin: Calcipr 42.2 45 0.00097 28.8 4.5 52 160-218 7-61 (184)
180 PF11823 DUF3343: Protein of u 41.5 25 0.00055 25.2 2.5 21 193-213 3-23 (73)
181 KOG0226 RNA-binding proteins [ 41.4 19 0.00041 33.3 2.1 66 73-141 201-270 (290)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 41.0 46 0.00099 28.3 4.3 60 148-210 7-73 (176)
183 KOG0111 Cyclophilin-type pepti 40.6 46 0.001 30.4 4.4 73 59-132 7-84 (298)
184 PF07576 BRAP2: BRCA1-associat 39.5 99 0.0021 24.6 5.7 57 67-125 18-77 (110)
185 PRK04337 50S ribosomal protein 38.7 74 0.0016 24.7 4.7 68 91-160 4-79 (87)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 37.8 47 0.001 28.3 3.9 56 65-121 10-73 (176)
187 KOG2314 Translation initiation 37.3 49 0.0011 33.9 4.4 76 149-226 59-141 (698)
188 PF07576 BRAP2: BRCA1-associat 36.2 1.9E+02 0.0041 23.0 6.9 61 153-216 18-79 (110)
189 PF05573 NosL: NosL; InterPro 36.0 38 0.00081 27.8 2.9 48 174-221 97-144 (149)
190 KOG1855 Predicted RNA-binding 35.5 54 0.0012 32.4 4.3 130 79-212 148-307 (484)
191 PRK13611 photosystem II reacti 35.2 47 0.001 26.6 3.2 35 166-202 4-38 (104)
192 PF11823 DUF3343: Protein of u 33.7 1.3E+02 0.0029 21.4 5.2 66 105-180 3-70 (73)
193 cd06398 PB1_Joka2 The PB1 doma 32.1 1.2E+02 0.0026 23.2 5.0 51 155-213 24-75 (91)
194 KOG2202 U2 snRNP splicing fact 30.9 26 0.00056 32.2 1.3 27 103-131 110-136 (260)
195 cd04883 ACT_AcuB C-terminal AC 29.6 1.2E+02 0.0026 20.6 4.3 49 77-125 16-66 (72)
196 PF11387 DUF2795: Protein of u 28.9 34 0.00073 22.8 1.3 20 153-172 1-20 (44)
197 PF00564 PB1: PB1 domain; Int 28.3 61 0.0013 23.1 2.7 48 69-123 21-69 (84)
198 CHL00128 psbW photosystem II p 28.1 82 0.0018 25.6 3.5 35 166-202 4-39 (113)
199 cd05992 PB1 The PB1 domain is 27.6 2.2E+02 0.0048 20.0 5.9 50 68-124 19-69 (81)
200 PF01650 Peptidase_C13: Peptid 27.2 1.5E+02 0.0032 26.7 5.5 60 71-132 77-151 (256)
201 cd04909 ACT_PDH-BS C-terminal 26.2 1.7E+02 0.0037 19.8 4.6 48 76-123 15-62 (69)
202 KOG2314 Translation initiation 25.7 87 0.0019 32.1 4.0 65 60-125 56-128 (698)
203 cd06406 PB1_P67 A PB1 domain i 25.3 79 0.0017 24.1 2.8 49 69-123 20-68 (80)
204 PRK13610 photosystem II reacti 24.1 94 0.002 25.2 3.2 36 166-203 10-46 (113)
205 PF08671 SinI: Anti-repressor 23.5 39 0.00085 21.1 0.8 13 158-170 15-27 (30)
206 cd04881 ACT_HSDH-Hom ACT_HSDH_ 23.2 2.4E+02 0.0051 18.8 5.3 61 64-124 2-64 (79)
207 KOG0415 Predicted peptidyl pro 23.2 1.2E+02 0.0027 29.5 4.3 62 150-212 241-302 (479)
208 cd07996 WGR_MMR_like WGR domai 22.7 1.4E+02 0.003 21.1 3.7 31 180-211 32-62 (74)
209 PF11004 Kdo_hydroxy: 3-deoxy- 21.4 1.2E+02 0.0027 28.2 3.8 63 147-215 20-82 (281)
210 PLN00039 photosystem II reacti 21.3 1.1E+02 0.0025 24.7 3.2 35 166-202 3-38 (111)
211 COG2075 RPL24A Ribosomal prote 20.6 2.5E+02 0.0054 20.8 4.6 32 168-205 7-38 (66)
212 cd06396 PB1_NBR1 The PB1 domai 20.5 2.7E+02 0.0059 21.1 5.0 55 70-133 22-77 (81)
213 PRK13612 photosystem II reacti 20.4 1.1E+02 0.0024 24.8 3.0 36 166-203 6-42 (113)
214 KOG4638 Uncharacterized conser 20.4 1.4E+02 0.003 28.9 4.0 58 22-81 32-92 (371)
215 PF07045 DUF1330: Protein of u 20.1 2.2E+02 0.0047 19.9 4.1 21 188-208 36-56 (65)
No 1
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=100.00 E-value=6e-41 Score=317.15 Aligned_cols=146 Identities=25% Similarity=0.337 Sum_probs=131.8
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHH----HhCccceEEEEEEc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFR----LIGRKGRLYRLERA 135 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~----~lg~~gRyv~i~~~ 135 (227)
-++|+|||||||||.+||++||++|+|.. |++.| +|++ +||+|+|.|++||++||+ .||+ |||+|+.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~I~~----~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~--RYIEVf~~ 83 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCGIEN----LEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGH--RYIEVFTA 83 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCceeE----EEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCC--ceEEEEcc
Confidence 34599999999999999999999999987 88888 5885 699999999999999999 6778 99999999
Q ss_pred ccccccccc-------CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHH
Q 027131 136 EQSEWDIVM-------PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAF 208 (227)
Q Consensus 136 ~~~~~~~~~-------~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al 208 (227)
+..++++.. +..+++|+||||||.||++||++||+||+|++++|.|++++++ +|||||+|+|+|+++|++||
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rg-R~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRG-RPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCC-CcccceEEEecCHHHHHHHH
Confidence 988755432 1246799999999999999999999999999999999999995 89999999999999999999
Q ss_pred HHhcCc
Q 027131 209 IRKNRG 214 (227)
Q Consensus 209 ~~~n~r 214 (227)
.+++.+
T Consensus 163 ~rhre~ 168 (510)
T KOG4211|consen 163 GRHREN 168 (510)
T ss_pred HHHHHh
Confidence 988765
No 2
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=234.17 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=126.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHH----HhCccceEEEEEEccc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFR----LIGRKGRLYRLERAEQ 137 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~----~lg~~gRyv~i~~~~~ 137 (227)
..||||||||+|+++||.+||++++|..++|.++.++.++ ++||||+|.|.+++++||. .||+ |||+|+++.+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGh--RYIEvF~Ss~ 181 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGH--RYIEVFRSSR 181 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhcc--ceEEeehhHH
Confidence 3479999999999999999999999999999999999777 5799999999999999999 5567 8999976654
Q ss_pred cc------------------------------------cc--------------------------------------cc
Q 027131 138 SE------------------------------------WD--------------------------------------IV 143 (227)
Q Consensus 138 ~~------------------------------------~~--------------------------------------~~ 143 (227)
.+ |. ++
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 21 00 00
Q ss_pred c---------------CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHH
Q 027131 144 M---------------PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAF 208 (227)
Q Consensus 144 ~---------------~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al 208 (227)
. ...++||+||||||+++..||..||+++ .|-.|++-+++. |++||||.|.|.|+++|..||
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl--~p~~v~i~ig~d-Gr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL--NPYRVHIEIGPD-GRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC--CceeEEEEeCCC-CccCCcceeecccchhhHhhh
Confidence 0 0123799999999999999999999999 566999999999 599999999999999999999
Q ss_pred HHhcCcc
Q 027131 209 IRKNRGF 215 (227)
Q Consensus 209 ~~~n~rf 215 (227)
.+.+..-
T Consensus 339 skd~anm 345 (510)
T KOG4211|consen 339 GKDGANM 345 (510)
T ss_pred ccCCccc
Confidence 9877653
No 3
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=1.4e-26 Score=215.45 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=131.6
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcC-CCCCC--CCCeEEEecCCCC-cceEEEEeCCHHHHHHHHH----HhCccceEE
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLE-GCNLT--PDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFR----LIGRKGRLY 130 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~-g~~I~--~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~----~lg~~gRyv 130 (227)
.+..+-||+|||||+|+..||..||. .|.|+ .+||.|..-.+|| +|+|||.|..++|++.||. .||. |||
T Consensus 158 k~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGq--RYI 235 (508)
T KOG1365|consen 158 KENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQ--RYI 235 (508)
T ss_pred cccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhH--HHH
Confidence 35566699999999999999999994 67775 5888888766777 5899999999999999999 5566 899
Q ss_pred EEEEccccccccc--------------------------cC-CCCcEEEEeccCCCCCHHHHHHccCCCc--ccCCceEE
Q 027131 131 RLERAEQSEWDIV--------------------------MP-YNGKTVLLQNVPRIAVAEDVERFLSGCE--YEASSISF 181 (227)
Q Consensus 131 ~i~~~~~~~~~~~--------------------------~~-~~g~~V~LrgLPf~~tkeEI~~FFsG~~--i~p~~I~l 181 (227)
|++++...+.-.. .. -...||+||||||.+++|||.+||-.+. |...+|++
T Consensus 236 ElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHm 315 (508)
T KOG1365|consen 236 ELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHM 315 (508)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEE
Confidence 9987765431100 01 1246999999999999999999999875 45566999
Q ss_pred EeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 182 MLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 182 ~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
.++.+ |+|+|||||||.+.|.|..|..+.+..++..+=|
T Consensus 316 v~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 316 VLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred EEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 99988 5999999999999999999999988888755444
No 4
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=2.9e-23 Score=193.38 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=126.1
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCcceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEcc
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAE 136 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~ 136 (227)
+..+-||+|||||..++.||..||.|++|...++-++.+- +.|.++|+|.|.|++..+.||+-++ ..+||+++++.+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 4566689999999999999999999999999999999999 5557999999999999999999222 234999998887
Q ss_pred ccccccc--------c---C-CCCcEEEEeccCCCCCHHHHHHccC---CCcccCCceEEEeecCCCCcceeEEEEcCCH
Q 027131 137 QSEWDIV--------M---P-YNGKTVLLQNVPRIAVAEDVERFLS---GCEYEASSISFMLRQSLPDSIKWATVRFPSQ 201 (227)
Q Consensus 137 ~~~~~~~--------~---~-~~g~~V~LrgLPf~~tkeEI~~FFs---G~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~ 201 (227)
.++.-.. . + -+--.|+||||||+||..||..||. .+.-.-.+|-++..++ |||||+|||.|.++
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCH
Confidence 6552211 0 1 1234699999999999999999995 3333456788888888 59999999999999
Q ss_pred HHHHHHHHHhcC
Q 027131 202 TQAMDAFIRKNR 213 (227)
Q Consensus 202 e~A~~Al~~~n~ 213 (227)
++|..||+++++
T Consensus 217 e~aq~aL~khrq 228 (508)
T KOG1365|consen 217 EDAQFALRKHRQ 228 (508)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 5
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.78 E-value=1.2e-18 Score=171.31 Aligned_cols=76 Identities=24% Similarity=0.225 Sum_probs=73.7
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEec
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRVL 226 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrvl 226 (227)
+|.++|+||+++.|||++||++|+++|++|.+-++.. |.||||+-|.|+|++||.+|...++++..+|+-|.||+|
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~-G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ii 944 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD-GVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRII 944 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCC-CCcccceeEeecCHHHHHhhhhccccCcccceeEEEEeC
Confidence 6889999999999999999999999999999999888 599999999999999999999999999999999999986
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.75 E-value=3.7e-17 Score=152.68 Aligned_cols=160 Identities=11% Similarity=0.064 Sum_probs=127.5
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEccccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQSE 139 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~~~ 139 (227)
-|++.|||++++++||.+||+.|. ...+|++..|+ .|.. |.|||+|.+.+++++|+.+.| ..|+-+.+.......
T Consensus 91 ~l~V~nlp~~~~~~~l~~~F~~~G-~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~ 169 (457)
T TIGR01622 91 TVFVLQLALKARERDLYEFFSKVG-KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEK 169 (457)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhh
Confidence 489999999999999999999998 77889999988 5664 699999999999999999666 445655554331110
Q ss_pred ------ccccc--CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHh
Q 027131 140 ------WDIVM--PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK 211 (227)
Q Consensus 140 ------~~~~~--~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~ 211 (227)
..... .....+|++.|||+++|++||.++|..|.-+ ..|.+..+...|++.|.|+|.|.+.++|.+|+...
T Consensus 170 ~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i-~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 170 NRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDI-EDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred hhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe-EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhc
Confidence 00000 0113589999999999999999999999644 46788888776789999999999999999999988
Q ss_pred cCcccCCceeEEEe
Q 027131 212 NRGFCLNNQVSVRV 225 (227)
Q Consensus 212 n~rf~gn~~v~lrv 225 (227)
|+.-++.+.|.|..
T Consensus 249 ~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 249 NGFELAGRPIKVGY 262 (457)
T ss_pred CCcEECCEEEEEEE
Confidence 88777777877764
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=1.6e-16 Score=147.35 Aligned_cols=155 Identities=12% Similarity=0.131 Sum_probs=119.7
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQSE 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~~ 139 (227)
|.|.||||+++++||.++|+.|. ...+|++..|. .++. +-|||+|.+++++++|++.+ | ..++-++|.......
T Consensus 110 LfVgnLp~~~te~~L~~lF~~~G-~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~ 188 (346)
T TIGR01659 110 LIVNYLPQDMTDRELYALFRTIG-PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGG 188 (346)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccc
Confidence 89999999999999999999886 34677888776 5664 68999999999999999844 3 334444544321111
Q ss_pred cccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccC--
Q 027131 140 WDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCL-- 217 (227)
Q Consensus 140 ~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~g-- 217 (227)
.......|++.|||+++|+|||.++|+-|--+ ..+.++.|...|++.|-|+|+|.++++|.+|+...|...+-
T Consensus 189 ----~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V-~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~ 263 (346)
T TIGR01659 189 ----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQI-VQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG 263 (346)
T ss_pred ----cccccceeEEeCCCCcccHHHHHHHHHhcCCE-EEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 11223469999999999999999999988533 35777888756789999999999999999999988887553
Q ss_pred CceeEEEe
Q 027131 218 NNQVSVRV 225 (227)
Q Consensus 218 n~~v~lrv 225 (227)
..+|.+++
T Consensus 264 ~~~l~V~~ 271 (346)
T TIGR01659 264 SQPLTVRL 271 (346)
T ss_pred ceeEEEEE
Confidence 34666654
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=3.8e-16 Score=140.60 Aligned_cols=150 Identities=11% Similarity=0.075 Sum_probs=118.5
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQS 138 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~ 138 (227)
-+.+.|||++++++||.+||+.|. ....|++..|+ .|+. |-|||+|.+++|+++|+..+ | ..|+-+.|......
T Consensus 5 ~l~V~nLp~~~~e~~l~~~F~~~G-~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 5 NLIVNYLPQTMTQEEIRSLFTSIG-EIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHccC-CEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence 368999999999999999999987 66899999987 6665 68999999999999999844 3 34555555432111
Q ss_pred ccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 139 EWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 139 ~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
. ....+..|++.|||.+++.+|+.++|..|.=+ ..+.++.+...|.+.|-|+|+|.|.++|.+|+...|+.....
T Consensus 84 ~----~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 84 S----DSIKGANLYVSGLPKTMTQHELESIFSPFGQI-ITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred c----cccccceEEECCccccCCHHHHHHHHhccCCE-EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 1 11235579999999999999999999988422 246666765545788999999999999999999888877765
Q ss_pred c
Q 027131 219 N 219 (227)
Q Consensus 219 ~ 219 (227)
.
T Consensus 159 ~ 159 (352)
T TIGR01661 159 C 159 (352)
T ss_pred C
Confidence 3
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.67 E-value=1.5e-15 Score=146.25 Aligned_cols=155 Identities=11% Similarity=0.069 Sum_probs=124.3
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC---ccceEEEEEEcccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG---RKGRLYRLERAEQS 138 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg---~~gRyv~i~~~~~~ 138 (227)
.++|.|||++++++||.+||+.|. ....|++..|. .+++ |.|||+|.+.+|+.+|+..+. ..|+-++|.-..+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G-~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFG-PVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 478999999999999999999996 45789999988 4664 799999999999999998553 35677777544322
Q ss_pred ccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 139 EWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 139 ~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
.. ........|+++|||.+++.++|.++|+-|.-+ .++.+..+.. |+..|-|+|+|.+.++|.+|+.+.|+..+..
T Consensus 81 ~~--~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i-~~~~i~~~~~-g~skg~afV~F~~~e~A~~Ai~~lng~~~~~ 156 (562)
T TIGR01628 81 PS--LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNI-LSCKVATDEN-GKSRGYGFVHFEKEESAKAAIQKVNGMLLND 156 (562)
T ss_pred cc--ccccCCCceEEcCCCccCCHHHHHHHHHhcCCc-ceeEeeecCC-CCcccEEEEEECCHHHHHHHHHHhcccEecC
Confidence 10 011223479999999999999999999988532 3577777766 5789999999999999999999999988888
Q ss_pred ceeEE
Q 027131 219 NQVSV 223 (227)
Q Consensus 219 ~~v~l 223 (227)
.+|.+
T Consensus 157 ~~i~v 161 (562)
T TIGR01628 157 KEVYV 161 (562)
T ss_pred ceEEE
Confidence 77765
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.65 E-value=7.7e-15 Score=138.63 Aligned_cols=160 Identities=12% Similarity=0.106 Sum_probs=115.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCC------CCCCCCeEEEecC-CCCcceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGC------NLTPDDLKVNYTR-NYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~------~I~~d~I~~~ydr-~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
|+|.|||++++++||.+||..+ ....++..+..-. ....+-|||+|.|.+++.+||.+.| .+|+.+.|...
T Consensus 178 lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 178 LYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRP 257 (509)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCc
Confidence 7999999999999999999864 1111111121111 2234689999999999999998544 44555555322
Q ss_pred cccc-----------------cccc--------cCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCc
Q 027131 136 EQSE-----------------WDIV--------MPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDS 190 (227)
Q Consensus 136 ~~~~-----------------~~~~--------~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~p 190 (227)
.... +... .......|+|.|||+++|.++|.++|..|.-+ ..+.++.+...|.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~ 336 (509)
T TIGR01642 258 HDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL-KAFNLIKDIATGLS 336 (509)
T ss_pred cccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEecCCCCCc
Confidence 1100 0000 01123579999999999999999999998633 35677777655789
Q ss_pred ceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 191 IKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 191 tGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.|-|+|.|.+.++|.+|+...|+..++++.|.++.
T Consensus 337 ~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 337 KGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 99999999999999999999998888888877754
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.64 E-value=1.2e-14 Score=130.97 Aligned_cols=158 Identities=9% Similarity=0.086 Sum_probs=118.4
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-Cc--cc--eEEEEEEccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-GR--KG--RLYRLERAEQ 137 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g~--~g--Ryv~i~~~~~ 137 (227)
+++.|||++++.+|+..+|+.+. ....+.+..++ .+.. +-|||+|.|.+++++|++.+ |. .| +-+.+.-.+.
T Consensus 92 l~v~~l~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~ 170 (352)
T TIGR01661 92 LYVSGLPKTMTQHELESIFSPFG-QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANN 170 (352)
T ss_pred EEECCccccCCHHHHHHHHhccC-CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCC
Confidence 68899999999999999999885 33456666766 4554 68999999999999999844 42 12 2233321100
Q ss_pred cc------------------------------------------cc------------------------cc--------
Q 027131 138 SE------------------------------------------WD------------------------IV-------- 143 (227)
Q Consensus 138 ~~------------------------------------------~~------------------------~~-------- 143 (227)
.. |. ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (352)
T TIGR01661 171 PSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATD 250 (352)
T ss_pred CCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcccc
Confidence 00 00 00
Q ss_pred -----------c---CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHH
Q 027131 144 -----------M---PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFI 209 (227)
Q Consensus 144 -----------~---~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~ 209 (227)
. ...|.+|.++|||++++.+||.++|+.|-=+. .+.+++|..-|++.|-|+|.|.+.++|++|+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~-~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~ 329 (352)
T TIGR01661 251 GQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ-NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAIL 329 (352)
T ss_pred ccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 0 01133799999999999999999999886443 48899987557899999999999999999999
Q ss_pred HhcCcccCCceeEEE
Q 027131 210 RKNRGFCLNNQVSVR 224 (227)
Q Consensus 210 ~~n~rf~gn~~v~lr 224 (227)
..|+..+++.+|.+-
T Consensus 330 ~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 330 SLNGYTLGNRVLQVS 344 (352)
T ss_pred HhCCCEECCeEEEEE
Confidence 999998998888764
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.62 E-value=1.2e-14 Score=140.10 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=123.9
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-Cc--c----ceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-GR--K----GRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g~--~----gRyv~i~~~~ 136 (227)
++++|||++++++||.++|+.+.- ...|++..+..|.. |-|||+|.+.+++.+|++.+ |. . |+.+.+....
T Consensus 181 l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~ 259 (562)
T TIGR01628 181 LYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQ 259 (562)
T ss_pred EEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeeccc
Confidence 789999999999999999998863 35677777776664 68999999999999999844 42 1 4444443221
Q ss_pred ccc-c--cc-----------ccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHH
Q 027131 137 QSE-W--DI-----------VMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQT 202 (227)
Q Consensus 137 ~~~-~--~~-----------~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e 202 (227)
... . .. .....+..|+++|||.+++.+|+.++|+-|.-+ .+|.+..|.. |++.|-|+|.|.|.+
T Consensus 260 ~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i-~~~~i~~d~~-g~~~g~gfV~f~~~~ 337 (562)
T TIGR01628 260 KRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEI-TSAKVMLDEK-GVSRGFGFVCFSNPE 337 (562)
T ss_pred ChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCe-EEEEEEECCC-CCcCCeEEEEeCCHH
Confidence 110 0 00 012345679999999999999999999999543 3677888865 589999999999999
Q ss_pred HHHHHHHHhcCcccCCceeEEEec
Q 027131 203 QAMDAFIRKNRGFCLNNQVSVRVL 226 (227)
Q Consensus 203 ~A~~Al~~~n~rf~gn~~v~lrvl 226 (227)
+|.+|+.+.|++.++.++|.+.+-
T Consensus 338 ~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 338 EANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred HHHHHHHHhcCCeeCCceeEEEec
Confidence 999999999999999989888653
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.61 E-value=1.4e-14 Score=143.09 Aligned_cols=160 Identities=10% Similarity=0.048 Sum_probs=125.7
Q ss_pred eEE-EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 62 VFY-GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 62 ~~y-v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
..| +++.||||+++++||.++|+.|. ....|++..|+ .|++ |-|||+|.+.+++++|+..+ | ..||-++|...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG-~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFG-PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccC-CEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 445 89999999999999999999987 45679999987 6664 68999999999999999854 4 34666666533
Q ss_pred ccccc-----cccc--CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHH
Q 027131 136 EQSEW-----DIVM--PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAF 208 (227)
Q Consensus 136 ~~~~~-----~~~~--~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al 208 (227)
..... +... ......|++.|||++++.+||.++|+.|.-+ .++.+..|...|+..|-|||.|.++++|.+|+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I-~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEI-VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 22110 0000 1123579999999999999999999999533 46778888776788999999999999999999
Q ss_pred HHhcCcccCCceeEE
Q 027131 209 IRKNRGFCLNNQVSV 223 (227)
Q Consensus 209 ~~~n~rf~gn~~v~l 223 (227)
...|+--++...|.+
T Consensus 264 ~amNg~elgGr~LrV 278 (612)
T TIGR01645 264 ASMNLFDLGGQYLRV 278 (612)
T ss_pred HHhCCCeeCCeEEEE
Confidence 999988777766655
No 14
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.61 E-value=8.7e-16 Score=151.43 Aligned_cols=166 Identities=15% Similarity=0.120 Sum_probs=140.1
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHH--HhCccceEEEEEEccc
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFR--LIGRKGRLYRLERAEQ 137 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~--~lg~~gRyv~i~~~~~ 137 (227)
.+++|++++|++|+....||++||.|.++.-.+|+...--.-++|-++|+|.+.+++++|+. .+-...||+.+-..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred chhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCc
Confidence 67899999999999999999999999999877776643223347899999999999999999 2224458998866665
Q ss_pred cccccc------------------------------c--CC---CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEE
Q 027131 138 SEWDIV------------------------------M--PY---NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFM 182 (227)
Q Consensus 138 ~~~~~~------------------------------~--~~---~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~ 182 (227)
.+|... . ++ -|.||+|.+||+.++..+|++||.|..++++.|.|-
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 554411 0 11 146999999999999999999999999999999999
Q ss_pred eecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEec
Q 027131 183 LRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRVL 226 (227)
Q Consensus 183 ~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrvl 226 (227)
+.+. ++-+++|+|.|..++++.+|..-+..-+.|+..|+||-|
T Consensus 469 ~~P~-~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 469 RLPT-DLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cCCc-ccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 9988 488999999999999999999999999999999998855
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.50 E-value=1.4e-12 Score=124.76 Aligned_cols=155 Identities=15% Similarity=0.198 Sum_probs=116.4
Q ss_pred EEEeCCCC-CCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEccccc-
Q 027131 65 GKLLGISR-QTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQSE- 139 (227)
Q Consensus 65 v~lrgLP~-s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~~- 139 (227)
+++.|||+ .+++++|.+.|+.+. ....|++..++ .+-|||+|.+.+++.+|+..| | ..|+-++|.......
T Consensus 278 l~v~nL~~~~vt~~~L~~lF~~yG-~V~~vki~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~ 353 (481)
T TIGR01649 278 LMVSGLHQEKVNCDRLFNLFCVYG-NVERVKFMKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNV 353 (481)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccc
Confidence 79999998 699999999999887 45678888763 468999999999999999954 4 356655554321110
Q ss_pred -----------------cccc--cC-------------CCCcEEEEeccCCCCCHHHHHHccCCCcc-cCCceEEEeecC
Q 027131 140 -----------------WDIV--MP-------------YNGKTVLLQNVPRIAVAEDVERFLSGCEY-EASSISFMLRQS 186 (227)
Q Consensus 140 -----------------~~~~--~~-------------~~g~~V~LrgLPf~~tkeEI~~FFsG~~i-~p~~I~l~~d~~ 186 (227)
+... .. ....++++.|||+++|.|++.++|..+.. ....|.+.-+.+
T Consensus 354 ~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~ 433 (481)
T TIGR01649 354 QPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDN 433 (481)
T ss_pred cCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCC
Confidence 0000 00 01347999999999999999999999875 455676654333
Q ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCcccCCce----eEEEe
Q 027131 187 LPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQ----VSVRV 225 (227)
Q Consensus 187 ~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~----v~lrv 225 (227)
.+.|.|+|.|.+.++|.+|+.+.|+.-+.++. ..|||
T Consensus 434 --~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv 474 (481)
T TIGR01649 434 --ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKV 474 (481)
T ss_pred --CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEE
Confidence 36799999999999999999999998887654 45554
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.49 E-value=7.4e-13 Score=126.59 Aligned_cols=151 Identities=11% Similarity=0.063 Sum_probs=109.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh---C--ccceEEEEEEccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI---G--RKGRLYRLERAEQSE 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l---g--~~gRyv~i~~~~~~~ 139 (227)
|+|+||||+++.+||.++|+.+. ....|.+.-++ +.|||+|.+.+++++|+..+ + ..||-++|.-....+
T Consensus 5 v~V~nLp~~~te~~L~~~f~~fG-~V~~v~i~~~k----~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 5 VHVRNLPQDVVEADLVEALIPFG-PVSYVMMLPGK----RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred EEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEECCC----CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 68999999999999999999887 44556665432 58999999999999999853 2 456766665443222
Q ss_pred cccccC-------CCC-cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHh
Q 027131 140 WDIVMP-------YNG-KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK 211 (227)
Q Consensus 140 ~~~~~~-------~~g-~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~ 211 (227)
...... .+. ..|.+.|||+.+|.+++.+.|+-|.-+ ..|.++.+.+ +|.|+|+|.+.++|.+|+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V-~~v~i~~~~~----~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 80 IKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKV-LRIVTFTKNN----VFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred cccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCE-EEEEEEecCC----ceEEEEEECCHHHHHHHHHHh
Confidence 110000 111 258999999999999999999999644 3455554432 468999999999999999988
Q ss_pred cCcccCCceeEEEe
Q 027131 212 NRGFCLNNQVSVRV 225 (227)
Q Consensus 212 n~rf~gn~~v~lrv 225 (227)
|+..+-+....|+|
T Consensus 155 ng~~i~~~~~~l~v 168 (481)
T TIGR01649 155 NGADIYNGCCTLKI 168 (481)
T ss_pred cCCcccCCceEEEE
Confidence 88876443344443
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.46 E-value=1.4e-12 Score=128.40 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=107.0
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEE-EecC-CCC-cceEEEEeCCHHHHHHHHHHh--C---ccceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKV-NYTR-NYM-PFAMMMQFPSFSAYDNAFRLI--G---RKGRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~-~ydr-~g~-~~eAfV~F~S~~d~~~AL~~l--g---~~gRyv~i~~~~ 136 (227)
+.|.|||++++++||.+.|+.+.-....+.+ .-+. .+. .+-|||+|.|.+++.+|.+.+ + ..|+-+.|+...
T Consensus 141 LFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~ 220 (578)
T TIGR01648 141 LFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAE 220 (578)
T ss_pred eEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeec
Confidence 6889999999999999999887543333322 2122 233 368999999999999999844 1 235555555443
Q ss_pred cccc-ccccCCCCcEEEEeccCCCCCHHHHHHccCCC---cccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 137 QSEW-DIVMPYNGKTVLLQNVPRIAVAEDVERFLSGC---EYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 137 ~~~~-~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~---~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
...- +.......++|+++|||.++++|||.++|+.| +|. .|.+ ..|-|+|.|.|+++|.+|+...|
T Consensus 221 p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~--rV~~--------~rgfAFVeF~s~e~A~kAi~~ln 290 (578)
T TIGR01648 221 PEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVE--RVKK--------IRDYAFVHFEDREDAVKAMDELN 290 (578)
T ss_pred ccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceE--EEEe--------ecCeEEEEeCCHHHHHHHHHHhC
Confidence 2221 11111234689999999999999999999998 332 2333 23469999999999999999888
Q ss_pred CcccCCceeEEE
Q 027131 213 RGFCLNNQVSVR 224 (227)
Q Consensus 213 ~rf~gn~~v~lr 224 (227)
+..+..+.|.|.
T Consensus 291 G~~i~Gr~I~V~ 302 (578)
T TIGR01648 291 GKELEGSEIEVT 302 (578)
T ss_pred CCEECCEEEEEE
Confidence 877777787764
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.40 E-value=5e-12 Score=124.42 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=104.1
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-Cc---cceEEEEEEccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-GR---KGRLYRLERAEQSE 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g~---~gRyv~i~~~~~~~ 139 (227)
|.|.|||++++++||+++|+.|. ...+|++..|..|.+ +-|||+|.+.+++++|++.+ +. .+|.+.+..
T Consensus 61 lFVgnLp~~~tEd~L~~~F~~~G-~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~----- 134 (578)
T TIGR01648 61 VFVGKIPRDLYEDELVPLFEKAG-PIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI----- 134 (578)
T ss_pred EEeCCCCCCCCHHHHHHHHHhhC-CEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc-----
Confidence 78999999999999999999987 445688888887776 58999999999999999966 32 133322211
Q ss_pred cccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEe-ecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 140 WDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFML-RQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 140 ~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~-d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
+.+.+.|.|.|||.+++++||.+.|+-+.-....+.+.. ....++..|-|+|.|.|+++|.+|..+.+
T Consensus 135 -----S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~ 203 (578)
T TIGR01648 135 -----SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLM 203 (578)
T ss_pred -----cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhh
Confidence 223467999999999999999999987632222232222 12224667899999999999999998764
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.4e-12 Score=123.78 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=107.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHHh-C--ccceEEEEE-------
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLE------- 133 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~------- 133 (227)
.-+|||||+|.+.||.+.|+.+. ..-.|.|--.++|. +|=|||+|+...|+.+||+.+ | -.||-|-++
T Consensus 120 LIIRNLPf~~k~~dLk~vFs~~G-~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 120 LIIRNLPFKCKKPDLKNVFSNFG-KVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EEeecCCcccCcHHHHHHHhhcc-eEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 67999999999999999999877 44567776656666 689999999999999999954 3 446766321
Q ss_pred -Eccc--------------------------------------cc-cc------------------------cc------
Q 027131 134 -RAEQ--------------------------------------SE-WD------------------------IV------ 143 (227)
Q Consensus 134 -~~~~--------------------------------------~~-~~------------------------~~------ 143 (227)
+-.. .+ .+ ..
T Consensus 199 ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k 278 (678)
T KOG0127|consen 199 YEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDK 278 (678)
T ss_pred ccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccc
Confidence 0000 00 00 00
Q ss_pred ----c--C---CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHh
Q 027131 144 ----M--P---YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK 211 (227)
Q Consensus 144 ----~--~---~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~ 211 (227)
+ . -.|.+|.||||||+||+|||..-|+-|.=+.. ..|+.+...|++.|.|||+|.++.+|.+++..-
T Consensus 279 ~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~y-a~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 279 KAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKY-AIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred hhccccccccccccceEEEecCCccccHHHHHHHHHhhcccee-EEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0 0 11479999999999999999999999965543 444445555799999999999999999988755
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.37 E-value=1.1e-11 Score=117.31 Aligned_cols=159 Identities=14% Similarity=0.033 Sum_probs=114.5
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCC-cceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYM-PFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQS 138 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~-~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~ 138 (227)
-++|.|||++++.+||.++|+.|. ....+.+..+. .|. .|.|||+|.+.++++.|+..+ | ..|+-+.|......
T Consensus 297 ~l~v~nlp~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 297 RIYIGNLPLYLGEDQIKELLESFG-DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 368999999999999999999986 45677888876 565 479999999999999999844 3 34454554332110
Q ss_pred --c-----cc-------ccc----------CCCCcEEEEeccCCC----------CCHHHHHHccCCCcccCCceEEEee
Q 027131 139 --E-----WD-------IVM----------PYNGKTVLLQNVPRI----------AVAEDVERFLSGCEYEASSISFMLR 184 (227)
Q Consensus 139 --~-----~~-------~~~----------~~~g~~V~LrgLPf~----------~tkeEI~~FFsG~~i~p~~I~l~~d 184 (227)
. .. ... ....++|+|.|+++. ...|||.+-|..|.-+. .|.|..+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~-~v~i~~~ 454 (509)
T TIGR01642 376 ANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLI-NIVIPRP 454 (509)
T ss_pred CCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCee-EEEeecc
Confidence 0 00 000 012357999999753 24578889999996553 4666653
Q ss_pred cCC---CCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 185 QSL---PDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 185 ~~~---g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
... +...|-|+|.|.+.++|.+|+...|++.++.+.|.+-
T Consensus 455 ~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~ 497 (509)
T TIGR01642 455 NGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAA 497 (509)
T ss_pred CcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 211 2346899999999999999999999988888888764
No 21
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=1.8e-11 Score=86.44 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=59.8
Q ss_pred EEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 151 VLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 151 V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
|+|+|||++++++||.+||+.+. ....|.+..+.. |+++|.|+|.|.|+++|.+|+...++....+++|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g-~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFG-PVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSS-BEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcC-CcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 78999999999999999999996 356899998877 6899999999999999999999999777776665
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.26 E-value=3.5e-10 Score=105.90 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=113.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEccc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQ 137 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~ 137 (227)
..++|.|||++++++||..+|+.+. ....|.+..++ +|.. +.|||+|.+.+++.+|+..+ | ..|+-+.|.-...
T Consensus 187 ~~l~v~nl~~~~te~~l~~~f~~~G-~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 187 LKLYVGNLHFNITEQELRQIFEPFG-DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 3478999999999999999999887 34668888887 4454 68999999999999999844 4 4456555533100
Q ss_pred cc------------------------------------cc------------------------------c---------
Q 027131 138 SE------------------------------------WD------------------------------I--------- 142 (227)
Q Consensus 138 ~~------------------------------------~~------------------------------~--------- 142 (227)
.. +. +
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 00 00 0
Q ss_pred -----c------cCCCCcEEEEeccCCCCC----------HHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCH
Q 027131 143 -----V------MPYNGKTVLLQNVPRIAV----------AEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQ 201 (227)
Q Consensus 143 -----~------~~~~g~~V~LrgLPf~~t----------keEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~ 201 (227)
+ ......||.|+||.-..+ ++||...|..|.-+ +.+.+.. +.+.|.|+|+|.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v---~~v~v~~--~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGV---VHIYVDT--KNSAGKIYLKFSSV 420 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCe---eEEEEeC--CCCceeEEEEECCH
Confidence 0 001235899999954444 57888889888533 3333322 24568999999999
Q ss_pred HHHHHHHHHhcCcccCCceeEEEe
Q 027131 202 TQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 202 e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++|++|+...|+++.+.+.|.+..
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~ 444 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAF 444 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEE
Confidence 999999999999999998888754
No 23
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.12 E-value=2.5e-10 Score=79.08 Aligned_cols=69 Identities=25% Similarity=0.254 Sum_probs=60.6
Q ss_pred EEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 151 VLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 151 V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
|++.|||.++|.+||.++|..+.-+ ..+.+..+.. +.+.|-|+|+|.++++|++|+...++..+++++|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i-~~~~~~~~~~-~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKI-ESIKVMRNSS-GKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTE-EEEEEEEETT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhc-cccccccccc-ccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 6899999999999999999999766 5677777744 6899999999999999999999888888877665
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.12 E-value=2.9e-10 Score=80.20 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=50.9
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHHhC
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~lg 124 (227)
|+|+|||++++++||++||+.+. ....|++.+++++. .+.|||+|.|++++.+|+..++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g-~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFG-PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSS-BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcC-CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 58999999999999999999996 46899999998766 4699999999999999999664
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=1.7e-09 Score=102.99 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=111.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHH-HhCc---cc--eEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFR-LIGR---KG--RLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~-~lg~---~g--Ryv~i~~~~ 136 (227)
+.+--+|.++++.||+.+|+.+. ....|.++-|+ .+.. |-.||.|.+.+|+++|.. +|.. -| ..|.+.-.+
T Consensus 37 lfVgqIprt~sE~dlr~lFe~yg-~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad 115 (510)
T KOG0144|consen 37 LFVGQIPRTASEKDLRELFEKYG-NVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYAD 115 (510)
T ss_pred heeccCCccccHHHHHHHHHHhC-ceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccc
Confidence 45667999999999999999887 45678888888 5554 689999999999999998 2211 01 123332221
Q ss_pred ccccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc
Q 027131 137 QSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF 215 (227)
Q Consensus 137 ~~~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf 215 (227)
.+.. ...+.+-+.+.-|+=+||++||..-|+-|..++ ++.|+.|+. |.+-|=|||+|.++|.|+.|+...|+.+
T Consensus 116 ~E~e---r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ie-d~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 116 GERE---RIVEERKLFVGMLSKQCTENEVREIFSRFGHIE-DCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred hhhh---ccccchhhhhhhccccccHHHHHHHHHhhCccc-hhhheeccc-ccccceeEEEEehHHHHHHHHHhhccce
Confidence 1110 012334467788999999999999999999886 689999988 4889999999999999999999999876
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=3.4e-09 Score=103.25 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=114.3
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEccccc-
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQSE- 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~~- 139 (227)
+.+++|||+++-+++-+||+...=....+-+++.-.+. -|-+||.|.=++|+++|++.+ + ..||-+.++...+..
T Consensus 8 lfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r 87 (678)
T KOG0127|consen 8 LFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRAR 87 (678)
T ss_pred EEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccccc
Confidence 67899999999999999999876444555555443334 368999999999999999944 3 567777654332110
Q ss_pred ---------------ccccc----CCC--CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEc
Q 027131 140 ---------------WDIVM----PYN--GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRF 198 (227)
Q Consensus 140 ---------------~~~~~----~~~--g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F 198 (227)
...+. ..+ ..-+-||||||.|.+.||..-|+-|..+ -.|.|+...++ +-.|=|||+|
T Consensus 88 ~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V-~Ei~IP~k~dg-klcGFaFV~f 165 (678)
T KOG0127|consen 88 SEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKV-VEIVIPRKKDG-KLCGFAFVQF 165 (678)
T ss_pred chhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceE-EEEEcccCCCC-CccceEEEEE
Confidence 00100 123 2347799999999999999999998766 35777776664 5559999999
Q ss_pred CCHHHHHHHHHHhcCcccCCceeE
Q 027131 199 PSQTQAMDAFIRKNRGFCLNNQVS 222 (227)
Q Consensus 199 ~S~e~A~~Al~~~n~rf~gn~~v~ 222 (227)
....+|.+|+..-|..=.+-.+|-
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VA 189 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVA 189 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeE
Confidence 999999999998887655544553
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.2e-08 Score=94.00 Aligned_cols=137 Identities=13% Similarity=0.099 Sum_probs=113.0
Q ss_pred CCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC---ccceEEEEEEccccccccccCCCC
Q 027131 72 RQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG---RKGRLYRLERAEQSEWDIVMPYNG 148 (227)
Q Consensus 72 ~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg---~~gRyv~i~~~~~~~~~~~~~~~g 148 (227)
.+++..++.++|+... ..-.|+++-|- +-.|.|+|.|.+.+|+.+|+.-+. .+|+-++|..+.+..
T Consensus 8 ~~v~e~~l~~~f~~~~-~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~--------- 76 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAG-PVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP--------- 76 (369)
T ss_pred CcCChHHHHHHhcccC-CceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC---------
Confidence 8899999999998866 56789999888 644799999999999999999554 556666665443222
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
..|.+.||+-+.+-.+|.++|+.|.=+ -++.+-+|..| ..|- +|+|.|+++|.+|+.+.|+.++..++|-+
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~i-lS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNI-LSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCe-eEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 139999999999999999999999422 25667778874 6777 99999999999999999999999998876
No 28
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.88 E-value=9.3e-09 Score=69.82 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=62.1
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.|.++|||..++.+||.++|.++. ....+.+..+... .+.|.|+|.|.|.++|.+|+...++....+..+.++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g-~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFG-KVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcC-CEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 378999999999999999999983 3456777776663 688999999999999999999999997777777664
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=1.4e-08 Score=101.03 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=101.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCC--C---cceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNY--M---PFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g--~---~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
++++||+|+.+.+++...|.-.+ +.-.|.|..-++. . .|-+||+|.+.+++++|++.| | ..|+-+++.-+.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G-~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQG-TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcC-eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 68889999999999999998733 2222333322222 2 268999999999999999966 4 445545554333
Q ss_pred ccccc---cccCCCCc--EEEEeccCCCCCHHHHHHccCCC-cccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHH
Q 027131 137 QSEWD---IVMPYNGK--TVLLQNVPRIAVAEDVERFLSGC-EYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIR 210 (227)
Q Consensus 137 ~~~~~---~~~~~~g~--~V~LrgLPf~~tkeEI~~FFsG~-~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~ 210 (227)
....+ .+.++... -|++||+||.+++.||++-|.-| .|. +|.|+---+-+---|-++|.|.|+.+|.+|+..
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlk--svRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLK--SVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhccccee--eeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 22111 11133322 49999999999999999999999 444 466654311111125699999999999999965
Q ss_pred hc-CcccCCc
Q 027131 211 KN-RGFCLNN 219 (227)
Q Consensus 211 ~n-~rf~gn~ 219 (227)
+. -.++|..
T Consensus 675 l~STHlyGRr 684 (725)
T KOG0110|consen 675 LGSTHLYGRR 684 (725)
T ss_pred hcccceechh
Confidence 54 3444543
No 30
>smart00360 RRM RNA recognition motif.
Probab=98.83 E-value=9.8e-09 Score=68.97 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=58.5
Q ss_pred EeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 153 LQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 153 LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
+.|||.+++.+||.++|..+.-+ ..+.+..+...+++.|.|+|+|.+.++|.+|+...++...++..|.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v-~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKI-ESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCE-eEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 47999999999999999988622 35777776655688999999999999999999999877777777665
No 31
>smart00362 RRM_2 RNA recognition motif.
Probab=98.82 E-value=1.3e-08 Score=68.74 Aligned_cols=71 Identities=23% Similarity=0.192 Sum_probs=57.8
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
+|+++|||.+++.+||.+||..+.-+ ..+.+..+. +.+.|.|+|.|.+.++|.+|+...++....+..|.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v-~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPI-ESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCE-EEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48899999999999999999998633 245555555 478899999999999999999988866666656654
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.80 E-value=2.8e-08 Score=81.75 Aligned_cols=77 Identities=8% Similarity=0.073 Sum_probs=64.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...|++.|||+++|++||.++|..|- .-..|.+..|...|++.|-|+|.|.++++|.+|+...|..-+....|.+.+
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFG-DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45799999999999999999999995 224688888876678999999999999999999998777766666776643
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.80 E-value=4.5e-08 Score=84.53 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=126.7
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCC-cceEEEEeCCHHHHHHHHHHh---CccceEEEEE
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYM-PFAMMMQFPSFSAYDNAFRLI---GRKGRLYRLE 133 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~-~~eAfV~F~S~~d~~~AL~~l---g~~gRyv~i~ 133 (227)
.++..=+++-||+--++++-+-..|-.+. +.-.||+--|+ ... .|-+|++|.+++|++=|.+.+ +..||.+++.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqag-pVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAG-PVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcC-ceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 45555678999999999999999997765 44567777666 333 579999999999999999943 5778888888
Q ss_pred EccccccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC
Q 027131 134 RAEQSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR 213 (227)
Q Consensus 134 ~~~~~~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~ 213 (227)
+++..+ +....|.-+.+.||-+.+...=..+-|+-+...-..=.+++++..|.|.|=++|.|.|.|.+.+|+.-.|+
T Consensus 85 kas~~~---~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 85 KASAHQ---KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred eccccc---ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 886222 12223566899999998888877777776654444345667777778999999999999999999999999
Q ss_pred cccCCceeEE
Q 027131 214 GFCLNNQVSV 223 (227)
Q Consensus 214 rf~gn~~v~l 223 (227)
-++.|++|++
T Consensus 162 q~l~nr~itv 171 (203)
T KOG0131|consen 162 QYLCNRPITV 171 (203)
T ss_pred chhcCCceEE
Confidence 9999999986
No 34
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=7.2e-08 Score=90.63 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=113.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C----ccceEEEEEEccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G----RKGRLYRLERAEQSE 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g----~~gRyv~i~~~~~~~ 139 (227)
+.+.||+-+++-.+|.++|+.+. .--.+++..|++|.-|. ||+|.|++.+++|++.+ | -+..|+-++. +.+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g-~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~--~~~ 154 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFG-NILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE--RKE 154 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhc-CeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc--chh
Confidence 79999999999999999999987 44668888888885567 99999999999999944 3 2223333222 222
Q ss_pred ccc--ccCCC--CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc
Q 027131 140 WDI--VMPYN--GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF 215 (227)
Q Consensus 140 ~~~--~~~~~--g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf 215 (227)
|.. ...+. -.-|++.+++.+.+.++|..||.-+. ...++.+..+.. |++-|-++|+|.++++|..|+...+...
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g-~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYG-SITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccC-cceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCc
Confidence 221 11111 12499999999999999999999884 333445555666 4688999999999999999999999988
Q ss_pred cCCcee
Q 027131 216 CLNNQV 221 (227)
Q Consensus 216 ~gn~~v 221 (227)
.+...+
T Consensus 233 ~~~~~~ 238 (369)
T KOG0123|consen 233 FGDKEL 238 (369)
T ss_pred CCccce
Confidence 775443
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=4.1e-07 Score=87.16 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=103.9
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-Cc---cceEEEE--EEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-GR---KGRLYRL--ERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g~---~gRyv~i--~~~~ 136 (227)
|.|=++|.++.++|+.-+|+... .--++++-.|+ .|.. |.|||.|.+.+++++|.+.+ .+ -|+.+.+ ...+
T Consensus 86 VfvGkIPrD~~EdeLvplfEkiG-~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan 164 (506)
T KOG0117|consen 86 VFVGKIPRDVFEDELVPLFEKIG-KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN 164 (506)
T ss_pred EEecCCCccccchhhHHHHHhcc-ceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec
Confidence 57889999999999999998654 23567777886 6765 69999999999999999933 32 4555431 1000
Q ss_pred c-------------------------c-------------------------------------------cccc------
Q 027131 137 Q-------------------------S-------------------------------------------EWDI------ 142 (227)
Q Consensus 137 ~-------------------------~-------------------------------------------~~~~------ 142 (227)
. . -|..
T Consensus 165 ~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdW 244 (506)
T KOG0117|consen 165 CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDW 244 (506)
T ss_pred ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeec
Confidence 0 0 0110
Q ss_pred ccC---CC------CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC
Q 027131 143 VMP---YN------GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR 213 (227)
Q Consensus 143 ~~~---~~------g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~ 213 (227)
..+ -| =+++++||||-++|.|-|..-|.-+-=+ ..|..+-| =|||+|.++++|++||.+.|+
T Consensus 245 Aep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~v-eRVkk~rD--------YaFVHf~eR~davkAm~~~ng 315 (506)
T KOG0117|consen 245 AEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKV-ERVKKPRD--------YAFVHFAEREDAVKAMKETNG 315 (506)
T ss_pred cCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccce-EEeecccc--------eeEEeecchHHHHHHHHHhcC
Confidence 001 01 1578999999999999999999887322 12333323 499999999999999999998
Q ss_pred cccCCceeEE
Q 027131 214 GFCLNNQVSV 223 (227)
Q Consensus 214 rf~gn~~v~l 223 (227)
.=+--..|.+
T Consensus 316 keldG~~iEv 325 (506)
T KOG0117|consen 316 KELDGSPIEV 325 (506)
T ss_pred ceecCceEEE
Confidence 7655445443
No 36
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.63 E-value=1.4e-07 Score=65.22 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=50.4
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHHh
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~l 123 (227)
|++.|||++++++||.++|+.+... ..|++..+..+. .+-|||+|.+.+++++|+..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKI-ESIKVMRNSSGKSKGYAFVEFESEEDAEKALEEL 59 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTE-EEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhc-ccccccccccccccceEEEEEcCHHHHHHHHHHc
Confidence 5799999999999999999998855 778888876555 469999999999999999944
No 37
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.51 E-value=3.1e-07 Score=82.91 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=58.2
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.++|++.|||+++|++||.+||+.|.=+ ..|.|..+. ++.|-|+|.|.++++|.+|+.+++..++|. .|.+-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I-~~V~I~~d~---~~~GfAFVtF~d~eaAe~AllLnG~~l~gr-~V~Vt 75 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDI-EYVEMQSEN---ERSQIAYVTFKDPQGAETALLLSGATIVDQ-SVTIT 75 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeecC---CCCCEEEEEeCcHHHHHHHHHhcCCeeCCc-eEEEE
Confidence 4689999999999999999999999522 467777663 356899999999999999998666666555 76653
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.49 E-value=1.3e-06 Score=71.83 Aligned_cols=75 Identities=20% Similarity=0.065 Sum_probs=60.7
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEE
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLER 134 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~ 134 (227)
+-..-|+|.||||+++++||+++|+.|. ....|++..|+ .+++ +-|||+|.+++++++|++.+ + ..||.++|..
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFG-DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3334478899999999999999999986 56778888887 6665 68999999999999999854 4 4577777754
Q ss_pred c
Q 027131 135 A 135 (227)
Q Consensus 135 ~ 135 (227)
.
T Consensus 111 a 111 (144)
T PLN03134 111 A 111 (144)
T ss_pred C
Confidence 4
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.48 E-value=2.1e-06 Score=70.43 Aligned_cols=147 Identities=13% Similarity=0.100 Sum_probs=102.3
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC---ccceEEEEEEcc-
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG---RKGRLYRLERAE- 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg---~~gRyv~i~~~~- 136 (227)
..+.+.|||++++++||.++|..+... .+|++.+|+ .|.+ +-|||.|.+++++..|+..+. .+||-+.+....
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~-~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPV-KRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCce-eEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 458999999999999999999998844 789999997 6664 799999999999999999553 556766665531
Q ss_pred ----cccccc--c-------------cCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEE
Q 027131 137 ----QSEWDI--V-------------MPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVR 197 (227)
Q Consensus 137 ----~~~~~~--~-------------~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~ 197 (227)
+..+.. . ....+...++.++|+..+..+....|...... ..+.+........+.....+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDI-VRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccc-eeeeccCCCCCcccccccccc
Confidence 111210 0 01234579999999999999999999999766 233333333222233333355
Q ss_pred cCCHHHHHHHHHHh
Q 027131 198 FPSQTQAMDAFIRK 211 (227)
Q Consensus 198 F~S~e~A~~Al~~~ 211 (227)
+....+++.+....
T Consensus 274 ~~~~~~~~~~~~~~ 287 (306)
T COG0724 274 NEASKDALESNSRG 287 (306)
T ss_pred hhHHHhhhhhhccc
Confidence 55555555555443
No 40
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.44 E-value=6.7e-07 Score=83.34 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=66.3
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.++..|++.|||+++|++||.++|+-|--+ .+|.|..|...++..|-|+|+|.++++|.+|+.++|+.-+...+|.+.
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V-~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPI-NTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 346689999999999999999999988533 367777776667888999999999999999999988888888787764
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.43 E-value=1.7e-06 Score=58.53 Aligned_cols=58 Identities=7% Similarity=0.076 Sum_probs=50.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHHh
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~l 123 (227)
+.+.|||+.++.+||.++|..+ -....+++..++.+. .+.|+|+|.|.+++..|+..+
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~-g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~ 60 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKF-GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEAL 60 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhc-CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 5799999999999999999998 355778888877555 468999999999999999955
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.41 E-value=1.1e-06 Score=72.20 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=67.5
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||+++|++||.++|.-|..+ ..|.+.++..-|++.|-|+|.|.++++|.+|+...++..+....+.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~-~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPV-KRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCce-eEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 4789999999999999999999999755 5788888864468999999999999999999999997777777877765
No 43
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.40 E-value=8.5e-07 Score=79.37 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
.+|.+|++.||++.+|++||.+||+-|.=+ ..|.|..| ++..|-|+|.|.++++|..|+.+++..+++. +|.+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I-~~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~-~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAI-EHVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQ-RVCI 75 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCe-EEEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCc-eEEE
Confidence 357799999999999999999999999644 46777766 3566899999999999999998888888666 5654
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=4.5e-06 Score=76.06 Aligned_cols=159 Identities=11% Similarity=0.076 Sum_probs=112.7
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCC-cceEEEEeCCHHHHHHHHHHh-CccceEE-EEEEc
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYM-PFAMMMQFPSFSAYDNAFRLI-GRKGRLY-RLERA 135 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~-~~eAfV~F~S~~d~~~AL~~l-g~~gRyv-~i~~~ 135 (227)
+.+.-.-+-=||-.+|.+|++..|.-.. .-+..|+.-|+ .|. .|..||..-.++|+++|...+ |. |+- +-.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiG-eiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGL--rLQ~KTIKV 115 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGL--RLQNKTIKV 115 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhccc-ceeeeeeeeccccccccccceeeecChHHHHHHHhhhcce--eeccceEEE
Confidence 4444455666999999999999997533 23788888888 666 479999999999999999944 65 432 11122
Q ss_pred cccccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC-c
Q 027131 136 EQSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR-G 214 (227)
Q Consensus 136 ~~~~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~-r 214 (227)
+-..... ..-.|.-+++-|||-.-|..|+++-|+.|.=.= .-.++.|+..|-..|.++|+|.-+.||+.|....|+ .
T Consensus 116 SyARPSs-~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrII-tSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 116 SYARPSS-DSIKDANLYVSGLPKTMTQKELEQIFSPFGRII-TSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred EeccCCh-hhhcccceEEecCCccchHHHHHHHHHHhhhhh-hhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 1111000 011244599999999999999999999994221 123556776678889999999999999999987665 4
Q ss_pred ccC-CceeEE
Q 027131 215 FCL-NNQVSV 223 (227)
Q Consensus 215 f~g-n~~v~l 223 (227)
+.| +.+|++
T Consensus 194 P~g~tepItV 203 (360)
T KOG0145|consen 194 PSGCTEPITV 203 (360)
T ss_pred CCCCCCCeEE
Confidence 444 345554
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.37 E-value=8.2e-06 Score=76.32 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=109.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCC-------CCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTP-------DDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLE 133 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~-------d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~ 133 (227)
|++.|||-++|-+|++.+|+-|.|.- =-|++--+..|.. |+|++-+--++.++.|++.+ + ..|+-++|+
T Consensus 137 VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVe 216 (382)
T KOG1548|consen 137 VYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVE 216 (382)
T ss_pred EEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEe
Confidence 68999999999999999999999942 2477777778886 79999999999999999966 3 556777764
Q ss_pred Eccc----------c-------------------cccccc-----CCCCcEEEEeccC----CCCCHHHHHH-------c
Q 027131 134 RAEQ----------S-------------------EWDIVM-----PYNGKTVLLQNVP----RIAVAEDVER-------F 168 (227)
Q Consensus 134 ~~~~----------~-------------------~~~~~~-----~~~g~~V~LrgLP----f~~tkeEI~~-------F 168 (227)
+..- . .|.+.. ....++|-++|+= |..+.+.|.+ =
T Consensus 217 rAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~ee 296 (382)
T KOG1548|consen 217 RAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEE 296 (382)
T ss_pred hhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHH
Confidence 3321 0 022221 1234689999982 3344223322 2
Q ss_pred cCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 169 LSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 169 FsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
+.-|..+ .=.++|+ ..|-|+|.|.|.+.++|..+....++|+.+-++|+-
T Consensus 297 c~K~G~v--~~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A 346 (382)
T KOG1548|consen 297 CEKFGQV--RKVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTA 346 (382)
T ss_pred HHHhCCc--ceEEEec---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEE
Confidence 3333222 1223344 368899999999999999999999999999888763
No 46
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=2.9e-05 Score=70.90 Aligned_cols=149 Identities=17% Similarity=0.120 Sum_probs=106.7
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCC-cceEEEEeCCHHHHHHHHHHhC---ccceEEEEEEccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYM-PFAMMMQFPSFSAYDNAFRLIG---RKGRLYRLERAEQSE 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~-~~eAfV~F~S~~d~~~AL~~lg---~~gRyv~i~~~~~~~ 139 (227)
|.+--|.-.++-++|+.=|.-+. ...+-+++-|- .++ -|.+||-|+.++|+++|+..|+ .-+|-||--=..|+.
T Consensus 65 vfvgdls~eI~~e~lr~aF~pFG-evS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAFAPFG-EVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred EEehhcchhcchHHHHHHhcccc-ccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 67778999999999999998775 23445555555 444 5799999999999999999763 222555431111111
Q ss_pred ---------cccc---cCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHH
Q 027131 140 ---------WDIV---MPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDA 207 (227)
Q Consensus 140 ---------~~~~---~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~A 207 (227)
++.. .+-+..+|+.=|++-..|.++|.+-|+.|-=+ ..|.++=+.| =|||+|.++|.|.+|
T Consensus 144 ~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I-~EVRvFk~qG------YaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 144 SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPI-QEVRVFKDQG------YAFVRFETKEAAAHA 216 (321)
T ss_pred cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcc-eEEEEecccc------eEEEEecchhhHHHH
Confidence 1111 12345679999999999999999999999533 3467765544 599999999999999
Q ss_pred HHHhcCcccCCcee
Q 027131 208 FIRKNRGFCLNNQV 221 (227)
Q Consensus 208 l~~~n~rf~gn~~v 221 (227)
.-.-|..=.+-+.|
T Consensus 217 Iv~mNntei~G~~V 230 (321)
T KOG0148|consen 217 IVQMNNTEIGGQLV 230 (321)
T ss_pred HHHhcCceeCceEE
Confidence 88766655554454
No 47
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.28 E-value=2.7e-06 Score=76.89 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=59.5
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEcc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAE 136 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~ 136 (227)
.|++.|||++++++||++||+.|. .-..|.+..|++ ..+-|||+|++++++++|+.+.| ..||.++|....
T Consensus 6 tVfVgNLs~~tTE~dLrefFS~~G-~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 6 TVKVSNVSLKATERDIKEFFSFSG-DIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 489999999999999999999997 567888877653 34689999999999999998656 567888887654
No 48
>smart00362 RRM_2 RNA recognition motif.
Probab=98.21 E-value=8e-06 Score=54.87 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=47.6
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
+++.|||++++.+||.+||+.+. ....|.+..+++...+.|||+|.+.+++++|++.+
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g-~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~ 59 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFG-PIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEAL 59 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcC-CEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHh
Confidence 58999999999999999999876 33457776665323479999999999999999855
No 49
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=3.6e-06 Score=74.30 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=99.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhCccceEEEEE----Eccc---
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIGRKGRLYRLE----RAEQ--- 137 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg~~gRyv~i~----~~~~--- 137 (227)
|++-+|||.+.+.|+..||.+.. ...+|.+. .+-+||+|++..|++.|.--+-. +-++.+ +..+
T Consensus 4 v~vg~~~~~~~~~d~E~~f~~yg-~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~--~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 4 VYIGRLPYRARERDVERFFKGYG-KIPDADMK------NGFGFVEFEDPRDADDAVHDLDG--KELCGERLVVEHARGKR 74 (216)
T ss_pred eeecccCCccchhHHHHHHhhcc-ccccceee------cccceeccCchhhhhcccchhcC--ceecceeeeeecccccc
Confidence 57889999999999999999865 44445442 34449999999999999883311 111111 1111
Q ss_pred -------cc----ccccc---CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHH
Q 027131 138 -------SE----WDIVM---PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQ 203 (227)
Q Consensus 138 -------~~----~~~~~---~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~ 203 (227)
.. |.... ......+.+++++-.+.-.||.+.|+-+...+..+. .. +.|+|+|.++++
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~------~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RR------NFAFVEFSEQED 145 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hc------cccceeehhhhh
Confidence 00 22111 123445789999999999999999999976655554 11 359999999999
Q ss_pred HHHHHHHhcCcccCCceeEE
Q 027131 204 AMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 204 A~~Al~~~n~rf~gn~~v~l 223 (227)
|.+|+.++++-=+.+..|++
T Consensus 146 a~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhhcchhccchhhcCceeee
Confidence 99999999887666656654
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.18 E-value=5.3e-06 Score=76.73 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=121.0
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHH--HhCccceEEEEEEcccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFR--LIGRKGRLYRLERAEQSEW 140 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~--~lg~~gRyv~i~~~~~~~~ 140 (227)
+-+=||+|+++.+.++.+|..+. ...+..+-.|+ .++. +-.||.|.+.+.+..+|. .|...||-|+..+....+.
T Consensus 9 lfiGgisw~ttee~Lr~yf~~~G-ev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~ 87 (311)
T KOG4205|consen 9 LFIGGLSWETTEESLREYFSQFG-EVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSRED 87 (311)
T ss_pred eeecCcCccccHHHHHHHhcccC-ceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCccc
Confidence 37889999999999999995544 23555556666 6776 589999999999999998 4556677777755533221
Q ss_pred ccccC--CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 141 DIVMP--YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 141 ~~~~~--~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
..+.. ..-+.|.+-|||++++++|..++|.-+-.+ ..+.+.+|..-.++-|=++|.|.+++...+++..+-..||+.
T Consensus 88 ~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v-~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk 166 (311)
T KOG4205|consen 88 QTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKV-ADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGK 166 (311)
T ss_pred ccccccccceeEEEecCcCCCCchHHHhhhhhcccee-EeeEEeecccccccccceeeEeccccccceecccceeeecCc
Confidence 11111 122358888999999999999999999844 466777777777888999999999999999999999999998
Q ss_pred ceeEEE
Q 027131 219 NQVSVR 224 (227)
Q Consensus 219 ~~v~lr 224 (227)
+|.++
T Consensus 167 -~vevk 171 (311)
T KOG4205|consen 167 -KVEVK 171 (311)
T ss_pred -eeeEe
Confidence 67664
No 51
>smart00360 RRM RNA recognition motif.
Probab=98.17 E-value=6.8e-06 Score=54.92 Aligned_cols=56 Identities=7% Similarity=0.122 Sum_probs=47.1
Q ss_pred EeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh
Q 027131 67 LLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 67 lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l 123 (227)
+.|||++++.+||.++|+.+. ....|++..++ .+.+ +.|||+|.+.+++.+|++.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~ 58 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG-KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEAL 58 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC-CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHc
Confidence 469999999999999999887 34567887776 4554 59999999999999999854
No 52
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.17 E-value=4.1e-06 Score=83.52 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=66.1
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.+.|++.|||++++.++|.++|..|.=+ .+|.+..|...|++.|-|||.|.+.++|.+|+...|+..+++..|.++
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I-~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPI-KSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCE-EEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 4569999999999999999999998533 458888887667999999999999999999999988888888777664
No 53
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.12 E-value=9.3e-06 Score=72.77 Aligned_cols=70 Identities=13% Similarity=0.222 Sum_probs=57.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~ 136 (227)
|++.||+++++++||.+||+-|. .-..|++..|+ +..+-|||+|+++++++.|+.+-| ..++-|.|...+
T Consensus 8 V~V~NLS~~tTE~dLrefFS~~G-~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 8 AEVTNLSPKATEKDVYDFFSHCG-AIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred EEEecCCCCCCHHHHHHHHHhcC-CeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 99999999999999999999998 56778877663 223589999999999999998666 334567776654
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.97 E-value=0.00022 Score=64.00 Aligned_cols=148 Identities=17% Similarity=0.178 Sum_probs=104.9
Q ss_pred CeEE-EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-c-eEEEEeCCHHHHHHHHHHh-CccceE------
Q 027131 61 GVFY-GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-F-AMMMQFPSFSAYDNAFRLI-GRKGRL------ 129 (227)
Q Consensus 61 ~~~y-v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~-eAfV~F~S~~d~~~AL~~l-g~~gRy------ 129 (227)
|.+- ..+.|||-++..+||-+.|++|. +=++-++-|+. ++.+ . =|||.|.|.+++..|+.-+ |. |+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~-GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGv--rFDpE~~s 108 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFH-GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGV--RFDPETGS 108 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCC-CccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCe--eeccccCc
Confidence 3444 88999999999999999999998 55666676666 4443 3 7999999999999888843 42 22
Q ss_pred ---EEEEEccccc-------------------------------------------------------------------
Q 027131 130 ---YRLERAEQSE------------------------------------------------------------------- 139 (227)
Q Consensus 130 ---v~i~~~~~~~------------------------------------------------------------------- 139 (227)
+++-+++...
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 2322222100
Q ss_pred cccc------cCCCC-------cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEe-ecCCCCcceeEEEEcCCHHHHH
Q 027131 140 WDIV------MPYNG-------KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFML-RQSLPDSIKWATVRFPSQTQAM 205 (227)
Q Consensus 140 ~~~~------~~~~g-------~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~-d~~~g~ptGeA~V~F~S~e~A~ 205 (227)
|-+. ++..+ .++.+-||--+|+++|+.+-|+-| .+.+++- +..+|-| .|+|.|..-++|.
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~----~gf~~l~~~~~~g~~--vaf~~~~~~~~at 262 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRY----PGFHILKIRARGGMP--VAFADFEEIEQAT 262 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhC----CCceEEEEecCCCcc--eEeecHHHHHHHH
Confidence 0000 01111 248899999999999999999888 4777775 5555544 6999999999999
Q ss_pred HHHHHhcCcccC
Q 027131 206 DAFIRKNRGFCL 217 (227)
Q Consensus 206 ~Al~~~n~rf~g 217 (227)
.||+-+++..+-
T Consensus 263 ~am~~lqg~~~s 274 (284)
T KOG1457|consen 263 DAMNHLQGNLLS 274 (284)
T ss_pred HHHHHhhcceec
Confidence 999988765543
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=97.91 E-value=5.8e-05 Score=70.44 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=64.0
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHH-HhC--ccceEEEEEEcccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFR-LIG--RKGRLYRLERAEQS 138 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~-~lg--~~gRyv~i~~~~~~ 138 (227)
+||.|+||.-.+-|++..|.-+. ..-||-|++|..|.-|=+||.|++.+|+++|-. +|| -+||-|||......
T Consensus 99 LhVSNIPFrFRdpDL~aMF~kfG-~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 99 LHVSNIPFRFRDPDLRAMFEKFG-KVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred eEeecCCccccCccHHHHHHhhC-ceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 89999999999999999999887 456799999998888999999999999999998 777 56888888655443
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.88 E-value=3.4e-05 Score=75.52 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=111.0
Q ss_pred EeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhCc--cceEEEEEEccc-----
Q 027131 67 LLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIGR--KGRLYRLERAEQ----- 137 (227)
Q Consensus 67 lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg~--~gRyv~i~~~~~----- 137 (227)
..-|+-..+..|+..||+-.. ...+|.++-|+ .++. |-|+|+|-.++.+-.|+.+-|. +|-+|-+.....
T Consensus 184 ~~qla~r~~pRdL~efFs~~g-kVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~ 262 (549)
T KOG0147|consen 184 CMQLARRNPPRDLEEFFSIVG-KVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRA 262 (549)
T ss_pred HHHHhhcCCchhHHHHHHhhc-CcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHH
Confidence 334556677999999998765 77999999999 7775 6899999999999999987774 333444432211
Q ss_pred ---cccccccCCCCcE--EEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 138 ---SEWDIVMPYNGKT--VLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 138 ---~~~~~~~~~~g~~--V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
+.|-..+..-|+. +++.||=|+.+.+++..-|..+.=+ ..|.+..|...|+.+|-.+++|...++|.+|+...|
T Consensus 263 a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~I-e~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ln 341 (549)
T KOG0147|consen 263 ANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKI-ENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLN 341 (549)
T ss_pred HhccccccccccccchhhhhhcccccCchHHHHhhhccCcccc-eeeeeccccccccccCcceEEEecHHHHHHHHHHhc
Confidence 1122212222333 5899999999999999999999644 356677787567999999999999999999988888
Q ss_pred CcccC
Q 027131 213 RGFCL 217 (227)
Q Consensus 213 ~rf~g 217 (227)
+ |-+
T Consensus 342 g-fel 345 (549)
T KOG0147|consen 342 G-FEL 345 (549)
T ss_pred c-cee
Confidence 7 643
No 57
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.80 E-value=4.9e-05 Score=73.22 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=61.1
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccC
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCL 217 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~g 217 (227)
.+|++.|+||+.++|+|...|+|..=+ -++.+.+|...|+++|-||+.|.+.++|.+|.+.+|+.=.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v-~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPV-LSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCcc-ceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 689999999999999999999998633 57999999988999999999999999999999999855333
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.79 E-value=0.00043 Score=63.36 Aligned_cols=151 Identities=11% Similarity=0.081 Sum_probs=111.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCC-CCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-Ccc--ce--EEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNL-TPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-GRK--GR--LYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I-~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g~~--gR--yv~i~~~~ 136 (227)
.++.|||++++..|+.+.|+.+.= .-..| +.|. .|-+ |-+||.|.-..+++.|++-+ |.+ |- -|-|.-.+
T Consensus 130 LYvSGlPktMtqkelE~iFs~fGrIItSRi--L~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 130 LYVSGLPKTMTQKELEQIFSPFGRIITSRI--LVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred eEEecCCccchHHHHHHHHHHhhhhhhhhh--hhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 578999999999999999998753 23333 3444 4544 57999999999999999933 421 11 11111110
Q ss_pred c-c------------------------------ccc-------------cc---------------cCCCCcEEEEeccC
Q 027131 137 Q-S------------------------------EWD-------------IV---------------MPYNGKTVLLQNVP 157 (227)
Q Consensus 137 ~-~------------------------------~~~-------------~~---------------~~~~g~~V~LrgLP 157 (227)
+ + ..+ +. .+-.|-||.+=||-
T Consensus 208 nPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLs 287 (360)
T KOG0145|consen 208 NPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLS 287 (360)
T ss_pred CcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecC
Confidence 0 0 000 00 01224599999999
Q ss_pred CCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 158 RIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 158 f~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
.++.+.=.-+-|..|.-+ ..|.++.|....+++|-++|.+.+++||..|+.-+|+-=+|+
T Consensus 288 pd~de~~LWQlFgpFGAv-~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~ 347 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAV-TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 347 (360)
T ss_pred CCchHhHHHHHhCcccce-eeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc
Confidence 999999999999999855 468899998877899999999999999999999999988888
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=97.74 E-value=7.7e-05 Score=53.52 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHccC----CCcccCCceE-EEeecCC--CCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 162 AEDVERFLS----GCEYEASSIS-FMLRQSL--PDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 162 keEI~~FFs----G~~i~p~~I~-l~~d~~~--g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
.+||.+||+ -|.=+ .+|. +.++... |++.|-|+|.|.+.++|.+|+...|++......|..
T Consensus 2 ~~~l~~~~~~~~~~fG~v-~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEV-GKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCe-eEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 367888887 55322 2343 5565433 578899999999999999999999998887766653
No 60
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=5.2e-06 Score=84.46 Aligned_cols=124 Identities=10% Similarity=0.062 Sum_probs=96.7
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCC-CCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-CccceEEEEEEcccccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLT-PDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-GRKGRLYRLERAEQSEWDI 142 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~-~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g~~gRyv~i~~~~~~~~~~ 142 (227)
+.++||+..|.+.|+..+|....+. ..+|-+..+++.-.|-|+|+|.+.++..+|+.+. ++
T Consensus 670 ~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~----------------- 732 (881)
T KOG0128|consen 670 IFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC----------------- 732 (881)
T ss_pred HHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-----------------
Confidence 5688999999999999999877764 4556555555555689999999999999998854 11
Q ss_pred ccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHH
Q 027131 143 VMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFI 209 (227)
Q Consensus 143 ~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~ 209 (227)
-..+..|-|+|.||+||+|+...-++|.--+- +..++..-. |+|.|-|.|.|.++.+|-++..
T Consensus 733 --~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~-~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~ 795 (881)
T KOG0128|consen 733 --FFGKISVAISGPPFQGTKEELKSLASKTGNVT-SLRLVTVRA-GKPKGKARVDYNTEADASRKVA 795 (881)
T ss_pred --hhhhhhhheeCCCCCCchHHHHhhccccCCcc-ccchhhhhc-cccccceeccCCCcchhhhhcc
Confidence 01234688999999999999999999996444 344444434 5899999999999999988754
No 61
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.58 E-value=0.00015 Score=65.14 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=60.6
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCce
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQ 220 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~ 220 (227)
.|.+-|||++++.+||...|.-+. ....+.+.|+.. |++.|.|.|.|...+||.+|+...|.-.+-..+
T Consensus 85 ~v~v~NL~~~V~~~Dl~eLF~~~~-~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 85 KVNVSNLPYGVIDADLKELFAEFG-ELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred eeeeecCCcCcchHHHHHHHHHhc-cceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCce
Confidence 599999999999999999999996 666888999999 589999999999999999999999994333333
No 62
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.58 E-value=0.00045 Score=55.57 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=51.6
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
...+++|||||++|+||.++-|--|.-+ ..+-.+.. ....|.|+|..+.-.+|.+|+...++--.-|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~I---rQIRiG~~-k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTI---RQIRIGNT-KETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccce---EEEEecCc-cCcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 3578999999999999999999888322 12222333 2356899999999999999999888765555
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.0003 Score=63.46 Aligned_cols=77 Identities=19% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.|..+|++-|||-+.+..|.+.-|..+--+ ..|+|-.|...|.+.|=|||.|.|+++|.+|+..+|+.=. ..+-|||
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i-~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILrv 263 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPI-TRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILRV 263 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCcc-ceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEEE
Confidence 355689999999999999999999999655 3688888888889999999999999999999999987533 2355554
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.57 E-value=0.00055 Score=68.94 Aligned_cols=167 Identities=16% Similarity=0.126 Sum_probs=109.0
Q ss_pred CCccCCCCCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC----ccc
Q 027131 52 DLFLQTPTKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG----RKG 127 (227)
Q Consensus 52 ~~~~~sp~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg----~~g 127 (227)
++|++. ....+.+.++|||..++.+++..-|..+. .-.- ++|+++| -.|.|+|-...++.+|++.+. ...
T Consensus 376 ~~F~~~-~rs~~vil~kNlpa~t~~~elt~~F~~fG-~i~r--vllp~~G--~~aiv~fl~p~eAr~Afrklaysr~k~~ 449 (725)
T KOG0110|consen 376 DAFSQA-ERSDTVILVKNLPAGTLSEELTEAFLRFG-EIGR--VLLPPGG--TGAIVEFLNPLEARKAFRKLAYSRFKSA 449 (725)
T ss_pred ccchhh-hhhcceeeeccCccccccHHHHHHhhccc-ccce--eecCccc--ceeeeeecCccchHHHHHHhchhhhccC
Confidence 344442 33445689999999999999999887765 1122 2555322 269999999999999999553 222
Q ss_pred eE-EE-----EEE-------cc----------ccc----------cccc----c-------CCCCcE-EEEeccCCCCCH
Q 027131 128 RL-YR-----LER-------AE----------QSE----------WDIV----M-------PYNGKT-VLLQNVPRIAVA 162 (227)
Q Consensus 128 Ry-v~-----i~~-------~~----------~~~----------~~~~----~-------~~~g~~-V~LrgLPf~~tk 162 (227)
++ .+ ++. .. ..+ .+.. . .....+ ++++||+|+.|.
T Consensus 450 plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~ 529 (725)
T KOG0110|consen 450 PLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTL 529 (725)
T ss_pred ccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccch
Confidence 22 22 111 00 000 0000 0 012345 899999999999
Q ss_pred HHHHHccCCCcccCCceEEEeecC---CCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 163 EDVERFLSGCEYEASSISFMLRQS---LPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 163 eEI~~FFsG~~i~p~~I~l~~d~~---~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++++.-|.-+..+ -+|.|-.-.. .--+.|-+||+|.+.++|.+|+...++.-+--..|-|+.
T Consensus 530 e~l~~~F~k~G~V-lS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 530 EDLEDLFSKQGTV-LSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hHHHHHHHhcCeE-EEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 9999999886544 1233333221 012458999999999999999999997777666777664
No 65
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0026 Score=62.28 Aligned_cols=147 Identities=14% Similarity=0.198 Sum_probs=101.6
Q ss_pred CCeEE---EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEec----C-CCCc--c---eEEEEeCCHHHHHHHHH--HhC
Q 027131 60 KGVFY---GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYT----R-NYMP--F---AMMMQFPSFSAYDNAFR--LIG 124 (227)
Q Consensus 60 ~~~~y---v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~yd----r-~g~~--~---eAfV~F~S~~d~~~AL~--~lg 124 (227)
....| |-+=||||.++++.|.++|..|.= +++..- . ++.+ | .+|+.|+.|..+..-+. ..+
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs----~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGS----VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG 329 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccc----eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc
Confidence 44555 788899999999999999998863 222222 1 2222 4 89999999999998887 333
Q ss_pred ccceEEEEE--Eccc-----ccccccc---------CCC-CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCC
Q 027131 125 RKGRLYRLE--RAEQ-----SEWDIVM---------PYN-GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSL 187 (227)
Q Consensus 125 ~~gRyv~i~--~~~~-----~~~~~~~---------~~~-g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~ 187 (227)
...-|++|. .+.. ..|.+.. +.| .++|.+=|||.-.|.||+..+|.++==.--=+.|-+|+..
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 333455442 1111 1244332 223 4699999999999999999999855101111445567777
Q ss_pred CCcceeEEEEcCCHHHHHHHHHH
Q 027131 188 PDSIKWATVRFPSQTQAMDAFIR 210 (227)
Q Consensus 188 g~ptGeA~V~F~S~e~A~~Al~~ 210 (227)
.=|+|-+-|.|.++..=++|+..
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhh
Confidence 67999999999999999999875
No 66
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.48 E-value=0.00038 Score=55.97 Aligned_cols=66 Identities=9% Similarity=0.118 Sum_probs=54.0
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRL 132 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i 132 (227)
.++|||||++|++|.-+.|..+. +-.+|.+-.+ ...-|.|||..+...|+++|..++ | ..+||..+
T Consensus 21 LyirNLp~~ITseemydlFGkyg-~IrQIRiG~~-k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 21 LYIRNLPFKITSEEMYDLFGKYG-TIRQIRIGNT-KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred EEEecCCccccHHHHHHHhhccc-ceEEEEecCc-cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 68999999999999999998877 6678887443 223478999999999999999977 4 56787654
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0011 Score=59.83 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=54.8
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-Cc
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-GR 125 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g~ 125 (227)
++.-|||-|||-+++..|++..|.-+. .--.|++.-|+ .|.+ |=|||.|.|++|+.+|+..+ |+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg-~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~ 254 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFG-PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY 254 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccC-ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc
Confidence 444489999999999999999998765 56789999998 7776 57999999999999999966 54
No 68
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.29 E-value=0.0024 Score=56.06 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=90.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHH------HhCccceE-EEEEEccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFR------LIGRKGRL-YRLERAEQ 137 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~------~lg~~gRy-v~i~~~~~ 137 (227)
+++-|||-++...||.+.|..+. ...+|.+ -++-|-|.-|||+|+...|++.|+. +-|+ |+ ||+-.-.+
T Consensus 9 iyvGNLP~diRekeieDlFyKyg-~i~~ieL-K~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~--rLRVEfprggr 84 (241)
T KOG0105|consen 9 IYVGNLPGDIREKEIEDLFYKYG-RIREIEL-KNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC--RLRVEFPRGGR 84 (241)
T ss_pred EEecCCCcchhhccHHHHHhhhc-ceEEEEe-ccCCCCCCeeEEEecCccchhhhhhcccccccCcc--eEEEEeccCCC
Confidence 78899999999999999998765 2222322 2245557899999999999999998 4455 53 34433322
Q ss_pred cccccccC--------------------CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEE
Q 027131 138 SEWDIVMP--------------------YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVR 197 (227)
Q Consensus 138 ~~~~~~~~--------------------~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~ 197 (227)
..-+-..+ .+.--|.+.|||-..+-.|+.+.-.-- .+|.+---+. . |...|.
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea----GdvCfadv~r--D--g~GvV~ 156 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA----GDVCFADVQR--D--GVGVVE 156 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh----CCeeeeeeec--c--cceeee
Confidence 11110001 111248899999999999999875422 2333221111 1 246899
Q ss_pred cCCHHHHHHHHHHhc
Q 027131 198 FPSQTQAMDAFIRKN 212 (227)
Q Consensus 198 F~S~e~A~~Al~~~n 212 (227)
|.++||-.-|++++.
T Consensus 157 ~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLD 171 (241)
T ss_pred eeehhhHHHHHHhhc
Confidence 999999999998764
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.17 E-value=0.0094 Score=57.97 Aligned_cols=157 Identities=12% Similarity=0.164 Sum_probs=111.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC---ccceEEEEEEccccc-
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG---RKGRLYRLERAEQSE- 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg---~~gRyv~i~~~~~~~- 139 (227)
|++.|+||++.=+|+++.|..--=...=+.+++|+.|++ +-|.|+|+.+|.+++|++.+. ..||-..+.+....+
T Consensus 47 vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~ 126 (608)
T KOG4212|consen 47 VFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQR 126 (608)
T ss_pred EEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhh
Confidence 789999999999999999977433447788899998887 589999999999999999553 557755443332210
Q ss_pred -----------------------ccc-----------------c---------------------c--------------
Q 027131 140 -----------------------WDI-----------------V---------------------M-------------- 144 (227)
Q Consensus 140 -----------------------~~~-----------------~---------------------~-------------- 144 (227)
|.- + .
T Consensus 127 ~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~ 206 (608)
T KOG4212|consen 127 DQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRS 206 (608)
T ss_pred hhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhh
Confidence 110 0 0
Q ss_pred --CCCC---cEEEEeccCCCCCHHHHHHccC--CCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccC
Q 027131 145 --PYNG---KTVLLQNVPRIAVAEDVERFLS--GCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCL 217 (227)
Q Consensus 145 --~~~g---~~V~LrgLPf~~tkeEI~~FFs--G~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~g 217 (227)
.+.. .-|.|-||-|++-.....+=|- |- -.+|-+-.|-. |...|.|.++...+-+|..|+...++.=++
T Consensus 207 ~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk---v~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 207 LHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK---VQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred ccCCCCCccceeeeeccccccchHHHHHHhcccee---eeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 0000 1366777888777666666552 22 12444445555 467799999999999999999999988888
Q ss_pred CceeEEEe
Q 027131 218 NNQVSVRV 225 (227)
Q Consensus 218 n~~v~lrv 225 (227)
..+-+.|+
T Consensus 283 ~~~~~~Rl 290 (608)
T KOG4212|consen 283 DRRMTVRL 290 (608)
T ss_pred cccceeec
Confidence 87777775
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.12 E-value=0.001 Score=57.55 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=54.6
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHh-cCcccCCceeEEE
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK-NRGFCLNNQVSVR 224 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~-n~rf~gn~~v~lr 224 (227)
.-|++=||+.+++|.|++.-|+=|- .|.-++-+. .|-|-|||.|.+..||..|...+ +.++||. +|.+-
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG----~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~-r~rVE 80 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYG----PLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGS-RIRVE 80 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcC----cceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCc-eEEEE
Confidence 3599999999999999999999885 344444333 46688999999999999999765 5568887 66553
No 71
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.08 E-value=0.0015 Score=63.10 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=58.6
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRL 132 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i 132 (227)
..|++.|+||+.++++|...|++.. ..-.+++.||+ .|++ |-+|++|+++++..+|.+.+ | ..||-+++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g-~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVG-PVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccC-ccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 4489999999999999999999866 66889999999 7775 69999999999999999955 3 44565554
No 72
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.07 E-value=0.017 Score=55.67 Aligned_cols=159 Identities=15% Similarity=0.139 Sum_probs=106.8
Q ss_pred CccCCCCCCeEEEEEeC-CCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-Cc--cce
Q 027131 53 LFLQTPTKGVFYGKLLG-ISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-GR--KGR 128 (227)
Q Consensus 53 ~~~~sp~~~~~yv~lrg-LP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g~--~gR 128 (227)
...++|+ +-+-+-+.| .++.+|.+-+-..|.=+. ....|+++|+++ -.|+|++.....+..|+.++ |+ .|+
T Consensus 289 ~~~~~~~-~n~vllvsnln~~~VT~d~LftlFgvYG-dVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk 363 (492)
T KOG1190|consen 289 GKIESPS-ANVVLLVSNLNEEAVTPDVLFTLFGVYG-DVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGK 363 (492)
T ss_pred cccccCC-CceEEEEecCchhccchhHHHHHHhhhc-ceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCc
Confidence 4444544 222245555 578888877777775444 568899999864 67999999999999999977 43 344
Q ss_pred EEEEEEccccc--------cc----------c----cc----C-CCC----cEEEEeccCCCCCHHHHHHccCCCcccCC
Q 027131 129 LYRLERAEQSE--------WD----------I----VM----P-YNG----KTVLLQNVPRIAVAEDVERFLSGCEYEAS 177 (227)
Q Consensus 129 yv~i~~~~~~~--------~~----------~----~~----~-~~g----~~V~LrgLPf~~tkeEI~~FFsG~~i~p~ 177 (227)
.+|+.-+.... .| + ++ . +.+ .+++|-|+|-+|+.||+..-|.-=...
T Consensus 364 ~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~-- 441 (492)
T KOG1190|consen 364 KLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQ-- 441 (492)
T ss_pred eEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCce--
Confidence 55653332211 00 0 00 1 111 369999999999999999888533222
Q ss_pred ceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 178 SISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 178 ~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
+..+...+++ -.+|++|+.|.|+|..|++....-.+|-|..
T Consensus 442 -vkafkff~kd--~kmal~q~~sveeA~~ali~~hnh~lgen~h 482 (492)
T KOG1190|consen 442 -VKAFKFFQKD--RKMALPQLESVEEAIQALIDLHNHYLGENHH 482 (492)
T ss_pred -EEeeeecCCC--cceeecccCChhHhhhhccccccccCCCCce
Confidence 3333333322 2589999999999999999999999988743
No 73
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.07 E-value=0.002 Score=50.68 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=42.6
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCc-----ccCCceeE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRG-----FCLNNQVS 222 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~r-----f~gn~~v~ 222 (227)
|.+|++.|++=.++.++|...|..+. .|.. +|..-|. -+|+|+|.+.+.|.+|+...... =..+..|.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g----~V~y-VD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFG----EVAY-VDFSRGD--TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS------EEE-EE--TT---SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcC----Ccce-EEecCCC--CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 45799999999999999999999984 3332 2433233 48999999999999998877665 23455788
Q ss_pred EEec
Q 027131 223 VRVL 226 (227)
Q Consensus 223 lrvl 226 (227)
++||
T Consensus 74 ~~vL 77 (105)
T PF08777_consen 74 LEVL 77 (105)
T ss_dssp EE--
T ss_pred EEEC
Confidence 8887
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.01 E-value=0.0017 Score=53.95 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=55.2
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-Cc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-GR 125 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g~ 125 (227)
.+|++-||+|.++++.|-..|+.|. ....|.+-+|+ ...| |=.||+|-|.+|+..||+++ |+
T Consensus 37 ~tvyVgNlSfyttEEqiyELFs~cG-~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt 101 (153)
T KOG0121|consen 37 CTVYVGNLSFYTTEEQIYELFSKCG-DIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT 101 (153)
T ss_pred ceEEEeeeeeeecHHHHHHHHHhcc-chheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC
Confidence 4589999999999999999999998 66789999999 5555 78999999999999999988 44
No 75
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=96.91 E-value=0.0059 Score=59.21 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=59.2
Q ss_pred cccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC
Q 027131 140 WDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR 213 (227)
Q Consensus 140 ~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~ 213 (227)
|+-..+--|+-|.+=+||.++.++|.+.+|.-.-=+ -.+.|.+|+..|...|=|||.|.+.++|.+|..+.|.
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I-~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn 147 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKI-YELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNN 147 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccce-eeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhC
Confidence 554445557679999999999999999999765211 2477888866678999999999999999999998764
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=96.88 E-value=0.0018 Score=57.54 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=60.3
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEE
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRL 132 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i 132 (227)
+|.+-++|-||.|-++.+|+...|+.|. ...||+|--|+ .+.+ |=|||.|....|++.|+.-| | ..||-++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG-~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYG-RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhC-cccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 4555599999999999999999999998 67899999888 6666 57999999999999999955 4 45665554
No 77
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=96.86 E-value=0.0026 Score=53.43 Aligned_cols=81 Identities=20% Similarity=0.154 Sum_probs=68.0
Q ss_pred cccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 142 IVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 142 ~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
+..+..|-.|.+-|+--.+|.|||.+-|+.|.=+ ..|+|-.|...|=-+|-|+|.+.++++|.+|+..+|+-=++...|
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGei-KNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEI-KNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccc-cceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 3345667789999999999999999999999644 458888887777788999999999999999999999776666666
Q ss_pred EE
Q 027131 222 SV 223 (227)
Q Consensus 222 ~l 223 (227)
++
T Consensus 145 ~V 146 (170)
T KOG0130|consen 145 SV 146 (170)
T ss_pred eE
Confidence 65
No 78
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.81 E-value=0.0069 Score=41.05 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=28.9
Q ss_pred ceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 191 IKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 191 tGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.|.|+|+|.|.++|.+|+...|++....++|.+.
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~ 54 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVS 54 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4789999999999999999888877777777664
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=96.77 E-value=0.0018 Score=57.57 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCc-EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 146 YNGK-TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 146 ~~g~-~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.+|. .+++-||-|..|.+|+.+-|.-|.=+ .+|+|..|.-.+.+-|-|||.|....||+.||....+..+--.+++++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~v-gDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRV-GDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcc-cceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3454 48899999999999999999999744 689999987777899999999999999999999999998888788776
Q ss_pred e
Q 027131 225 V 225 (227)
Q Consensus 225 v 225 (227)
+
T Consensus 89 ~ 89 (256)
T KOG4207|consen 89 M 89 (256)
T ss_pred h
Confidence 5
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.73 E-value=0.005 Score=55.43 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=62.5
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHH-HhC--ccceEEEEEE
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFR-LIG--RKGRLYRLER 134 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~-~lg--~~gRyv~i~~ 134 (227)
+.+.+=|.+.|||+.++..||+.+|.++. ...-+-+-||+.|++ |-|-|.|+-.+|+..|++ +.| ..|+.+.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~-~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFG-ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhc-cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 34545579999999999999999999986 556677779997765 799999999999999999 444 5567777665
Q ss_pred cc
Q 027131 135 AE 136 (227)
Q Consensus 135 ~~ 136 (227)
+.
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 54
No 81
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=0.0048 Score=53.53 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=53.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-Ccc--ceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-GRK--GRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g~~--gRyv~i~~~~ 136 (227)
|+|=||+..++|.||..-|.-+. ....|-+.. .-|+-|||+|++..|+..|...| |+. |.-++|+...
T Consensus 13 VYVGnL~~~a~k~eLE~~F~~yG-~lrsvWvAr---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 13 VYVGNLGSRATKRELERAFSKYG-PLRSVWVAR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred EEeccCCCCcchHHHHHHHHhcC-cceeEEEee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 78999999999999999998776 445555543 23678999999999999999976 653 4456666553
No 82
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.63 E-value=0.0046 Score=59.48 Aligned_cols=151 Identities=12% Similarity=0.124 Sum_probs=98.9
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-----CccceEEEEEEccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-----GRKGRLYRLERAEQSE 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-----g~~gRyv~i~~~~~~~ 139 (227)
+|+|||||.|+++|++..+.-+.- ...|+++ ++.. .||++|.+++.+-.-..+- -..|+-+.|.-++..+
T Consensus 31 ~HlRnlp~e~tE~elI~Lg~pFG~-vtn~~~l--kGkn--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~~ 105 (492)
T KOG1190|consen 31 VHLRNLPWEVTEEELISLGLPFGK-VTNLLML--KGKN--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHSE 105 (492)
T ss_pred eEeccCCccccHHHHHHhcccccc-eeeeeee--ccch--hhhhhhcchhhhhheeecccccCccccCcceeehhhhHHH
Confidence 799999999999999999875542 2233332 2222 8999999998855422210 0222322232111110
Q ss_pred ------------------------cc-cccC-------CCCc----EEEEeccCCCCCHHHHHHccCCCcccCCceEEEe
Q 027131 140 ------------------------WD-IVMP-------YNGK----TVLLQNVPRIAVAEDVERFLSGCEYEASSISFML 183 (227)
Q Consensus 140 ------------------------~~-~~~~-------~~g~----~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~ 183 (227)
.. +... .+|. .+-+.++=|-+|-+=+.+-|+-|..+-.=|++.-
T Consensus 106 lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K 185 (492)
T KOG1190|consen 106 LKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK 185 (492)
T ss_pred HhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec
Confidence 00 0011 1121 2457899999999999999999998876666665
Q ss_pred ecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 184 RQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 184 d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+. .|+|||...+-|..|-..+.++=.-|-.-+||.
T Consensus 186 nn~F-----QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 186 NNGF-----QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred ccch-----hhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 6665 399999999999999888887766666666664
No 83
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=96.60 E-value=0.0038 Score=56.07 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=47.6
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHH
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~ 121 (227)
|.+=||||.+.|+++++||+.+.=..+- .++.|+ .||+ |.+||.|+..+.+.+|.+
T Consensus 15 ifVggL~w~T~~~~l~~yFeqfGeI~ea-vvitd~~t~rskGyGfVTf~d~~aa~rAc~ 72 (247)
T KOG0149|consen 15 IFVGGLAWETHKETLRRYFEQFGEIVEA-VVITDKNTGRSKGYGFVTFRDAEAATRACK 72 (247)
T ss_pred EEEcCcccccchHHHHHHHHHhCceEEE-EEEeccCCccccceeeEEeecHHHHHHHhc
Confidence 7888999999999999999998744443 455666 7775 699999999999999999
No 84
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.50 E-value=0.035 Score=49.45 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=92.6
Q ss_pred EEEeCCCCCCCHHHHHH----hcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIIN----LLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~----FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
++|+||.=-..|+|++. .|+-+. ..-+|.. -+... .|.|||.|++.+.+-.|++.+ | -.|.+++|.-..
T Consensus 12 lYInnLnekI~~~elkrsL~~LFsqfG-~ildI~a--~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 12 LYINNLNEKIKKDELKRSLYLLFSQFG-KILDISA--FKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred EeehhccccccHHHHHHHHHHHHHhhC-CeEEEEe--cCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 48899999999999998 998876 2223333 23334 579999999999999999944 3 222233331110
Q ss_pred c------c----------------------cccccc-CC------------C-----CcEEEEeccCCCCCHHHHHHccC
Q 027131 137 Q------S----------------------EWDIVM-PY------------N-----GKTVLLQNVPRIAVAEDVERFLS 170 (227)
Q Consensus 137 ~------~----------------------~~~~~~-~~------------~-----g~~V~LrgLPf~~tkeEI~~FFs 170 (227)
. . ..+... .+ . ..+..+.|+|-..+.|...+-|.
T Consensus 89 s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~ 168 (221)
T KOG4206|consen 89 SDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFE 168 (221)
T ss_pred CccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHh
Confidence 0 0 000000 00 1 23678999999999999998888
Q ss_pred CCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCc
Q 027131 171 GCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRG 214 (227)
Q Consensus 171 G~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~r 214 (227)
.|.= =..|.++-... |.|+|.|.+..+|..|...++.-
T Consensus 169 qf~g-~keir~i~~~~-----~iAfve~~~d~~a~~a~~~lq~~ 206 (221)
T KOG4206|consen 169 QFPG-FKEIRLIPPRS-----GIAFVEFLSDRQASAAQQALQGF 206 (221)
T ss_pred hCcc-cceeEeccCCC-----ceeEEecchhhhhHHHhhhhccc
Confidence 7731 13455554333 46999999999988888777653
No 85
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.44 E-value=0.0068 Score=53.98 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=62.9
Q ss_pred CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 145 PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 145 ~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
..+-+.|++-|+=|.+|.++|+.-|.+|. ..+.|++++|...|.|.|-|+|.|.+.+.+++|+..+...+-|-
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg-~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~ 170 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCG-GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGP 170 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccC-CccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccc
Confidence 35667899999999999999999999996 44668999988877899999999999999999999666555443
No 86
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=96.40 E-value=0.01 Score=49.87 Aligned_cols=69 Identities=9% Similarity=0.095 Sum_probs=57.6
Q ss_pred CccCCCCCCeEE-EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCC-cceEEEEeCCHHHHHHHHHH
Q 027131 53 LFLQTPTKGVFY-GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYM-PFAMMMQFPSFSAYDNAFRL 122 (227)
Q Consensus 53 ~~~~sp~~~~~y-v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~-~~eAfV~F~S~~d~~~AL~~ 122 (227)
.+.++-.+=+.| +.+-|+--.++.+||.+-|.++. .-..||+.+|| .|. -|.|+|+.++.+.++.|+.-
T Consensus 62 ~~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyG-eiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~ 133 (170)
T KOG0130|consen 62 MRPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYG-EIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDA 133 (170)
T ss_pred cCCCCccceeeEEEEEeccCcchhHHHHHHHHhhcc-cccceeeccccccccccceeeeehHhHHHHHHHHHh
Confidence 333344556778 88999999999999999998887 45789999999 565 58999999999999999983
No 87
>PLN03213 repressor of silencing 3; Provisional
Probab=96.23 E-value=0.015 Score=57.40 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=56.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCH--HHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSF--SAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~--~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
++|-||+|+++.+||...|..|. ...+|+|. ...| -|=|||+|.+. ++..+|+..+ | -+||-++|.+..
T Consensus 13 IYVGNLSydVTEDDLravFSeFG-sVkdVEIp-RETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 13 LHVGGLGESVGRDDLLKIFSPMG-TVDAVEFV-RTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEe-cccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 89999999999999999999996 56788887 2255 56899999988 7899999944 5 578888876553
No 88
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.21 E-value=0.007 Score=55.39 Aligned_cols=157 Identities=11% Similarity=-0.026 Sum_probs=103.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCC-CCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhCccceEEEEE--Eccccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTP-DDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIGRKGRLYRLE--RAEQSEWD 141 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~-d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg~~gRyv~i~--~~~~~~~~ 141 (227)
....++.|++...++.+|+.-..... ...-.+.+..-.-+...|.|.+.+.+..||...+.+.-+.... .++...-.
T Consensus 91 ~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~ 170 (285)
T KOG4210|consen 91 FFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGL 170 (285)
T ss_pred ccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccc
Confidence 45667777777777777775544432 2222222222224689999999999999999665422222211 01000000
Q ss_pred -cc-----c-CCCCcEEE-EeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC
Q 027131 142 -IV-----M-PYNGKTVL-LQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR 213 (227)
Q Consensus 142 -~~-----~-~~~g~~V~-LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~ 213 (227)
++ . ......++ +.||+|+.+.+||..+|..+.-+. .|.+..+...|.+.|-|+|.|.+...++.|+.- +.
T Consensus 171 ~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~-~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~ 248 (285)
T KOG4210|consen 171 RPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEIT-SVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT 248 (285)
T ss_pred cccchhcccccCccccceeecccccccchHHHhhhccCcCcce-eeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc
Confidence 00 0 11223566 999999999999998887775442 456666777788999999999999999999998 88
Q ss_pred cccCCceeEE
Q 027131 214 GFCLNNQVSV 223 (227)
Q Consensus 214 rf~gn~~v~l 223 (227)
+.|++..+.|
T Consensus 249 ~~~~~~~~~~ 258 (285)
T KOG4210|consen 249 RSIGGRPLRL 258 (285)
T ss_pred CcccCccccc
Confidence 9998865543
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.18 E-value=0.0063 Score=59.14 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=55.5
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCccc
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFC 216 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~ 216 (227)
.+.|+|-|+||++.-.|..+-|.---=.-.=+.|++|.. |++.|-|.|.|.++|-+.||+.+.|+-=+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 457999999999999999998864311112377889999 59999999999999999999999886433
No 90
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.16 E-value=0.084 Score=52.30 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=57.1
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRL 132 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i 132 (227)
+++.||-++.+..+++.-|+-+. .-+-|.+..|. .|++ |-+||+|...+++.+|+..+ | .-||.|+|
T Consensus 281 l~vgnLHfNite~~lr~ifepfg-~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFG-KIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred hhhcccccCchHHHHhhhccCcc-cceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEE
Confidence 57889999999999999999887 56778888886 7776 68999999999999999855 4 56888875
No 91
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.97 E-value=0.022 Score=51.40 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=50.4
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC-ccc
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR-GFC 216 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~-rf~ 216 (227)
+++.+-|||-++...||+.-|.+|.=.+.+.-=.++-++.-++=-|||.|.|+++|..|+..+|+ ||-
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD 103 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFD 103 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeec
Confidence 47889999999999999999887765544433233333212335799999999999999998876 443
No 92
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=95.97 E-value=0.014 Score=56.20 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCC-cccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGC-EYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~-~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
++..|+++|||++++..++..||..| +|.+++|-..- +++..+ ..|+|.|.+.+.+..|+..+ --++|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~-~~~~~~-~fgFV~f~~~~~~~~~i~As-p~~ig~~kl 359 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS-PGGKNP-CFGFVEFENAAAVQNAIEAS-PLEIGGRKL 359 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEec-cCCCcC-ceEEEEEeecchhhhhhhcC-ccccCCeeE
Confidence 34569999999999999999999998 46666676665 333345 89999999999999999887 444554443
No 93
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=95.81 E-value=0.022 Score=53.53 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=66.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+-+|+-|+||.-+.-|...-|.-|..+ .+|.|+++.+| ++|=.||.|.+.+||++|=.++++.-.--+.|.++.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~V-ldVEIIfNERG--SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKV-LDVEIIFNERG--SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCce-eeEEEEeccCC--CCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3569999999999999999999988866 57999998884 789999999999999999999999988877888764
No 94
>smart00361 RRM_1 RNA recognition motif.
Probab=95.65 E-value=0.045 Score=39.02 Aligned_cols=47 Identities=6% Similarity=-0.001 Sum_probs=34.9
Q ss_pred HHHHHHhcC----CCCCCCCCeE-EEecC-C--CCc-ceEEEEeCCHHHHHHHHHHh
Q 027131 76 KSDIINLLE----GCNLTPDDLK-VNYTR-N--YMP-FAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 76 K~DI~~FF~----g~~I~~d~I~-~~ydr-~--g~~-~eAfV~F~S~~d~~~AL~~l 123 (227)
.+||.+||+ -+. .-..|+ +..++ . +.+ |-+||.|.+.+|+.+|++.+
T Consensus 2 ~~~l~~~~~~~~~~fG-~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l 57 (70)
T smart00361 2 DEDFEREFSEEEEYFG-EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDL 57 (70)
T ss_pred chhHHHHHHHHHHhcC-CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 468899997 332 345564 66666 3 554 57999999999999999965
No 95
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=95.54 E-value=0.039 Score=48.79 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=43.6
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeE-EEecCCCC---c-ceEEEEeCCHHHHHHHHH
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLK-VNYTRNYM---P-FAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~-~~ydr~g~---~-~eAfV~F~S~~d~~~AL~ 121 (227)
.|.+ .+.-+|.-.-+.+|++||.... ..++ +-..|+.+ . +.|||+|+|++.++-|.+
T Consensus 49 ~g~~--~~~~~p~g~~e~~~~~~~~q~~---g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAE 110 (214)
T KOG4208|consen 49 EGVV--YVDHIPHGFFETEILNYFRQFG---GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAE 110 (214)
T ss_pred ccce--eecccccchhHHHHhhhhhhcC---CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHH
Confidence 4444 7788999999999999998876 2222 23444444 3 489999999999999999
No 96
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=95.49 E-value=0.017 Score=51.94 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=50.9
Q ss_pred EEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 151 VLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 151 V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
|.+=|||...++|+..++|..|.=+.+ ..++.|-..||+.|-.+|.|.+.+.|++|...-|
T Consensus 15 ifVggL~w~T~~~~l~~yFeqfGeI~e-avvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 15 IFVGGLAWETHKETLRRYFEQFGEIVE-AVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred EEEcCcccccchHHHHHHHHHhCceEE-EEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 899999999999999999999953333 3445565557999999999999999999986543
No 97
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=95.32 E-value=0.074 Score=49.54 Aligned_cols=58 Identities=7% Similarity=0.023 Sum_probs=52.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l 123 (227)
+.|--|+|.++..+|+.-|+-+. .-.-|+++.|. .|.+ |.|||+|+.+.|...|.+..
T Consensus 104 LFv~RLnydT~EskLrreF~~YG-~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~a 163 (335)
T KOG0113|consen 104 LFVARLNYDTSESKLRREFEKYG-PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDA 163 (335)
T ss_pred eeeeeccccccHHHHHHHHHhcC-cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhc
Confidence 77888999999999999999887 56789999998 8887 69999999999999999943
No 98
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=95.32 E-value=0.047 Score=45.57 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=60.0
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
.||++=||-|-+|+|.|..-|+-+.=+ ..|.|=.|--.-.|.|=-+|.|.|.++|..|++-.|+.=|-...|++
T Consensus 37 ~tvyVgNlSfyttEEqiyELFs~cG~i-rriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 37 CTVYVGNLSFYTTEEQIYELFSKCGDI-RRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred ceEEEeeeeeeecHHHHHHHHHhccch-heeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 489999999999999999999988522 23444444433469999999999999999999999988877766654
No 99
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=95.26 E-value=0.031 Score=49.80 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=52.7
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg 124 (227)
+++-|+-+.+|.++|..-|++|. ..+.|.+.+|+ .|.+ +-|||+|.+.+.+.+||..-|
T Consensus 104 v~v~nvd~~~t~~~~e~hf~~Cg-~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~g 164 (231)
T KOG4209|consen 104 VWVGNVDFLVTLTKIELHFESCG-GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDG 164 (231)
T ss_pred EEEeccccccccchhhheeeccC-CccceeeeccccCCCcceeEEEecccHhhhHHHhhcCC
Confidence 58899999999999999999999 77889999999 5555 589999999999999999444
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.26 E-value=0.043 Score=51.89 Aligned_cols=76 Identities=9% Similarity=0.063 Sum_probs=63.6
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCc-------eEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASS-------ISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~-------I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
..||+.|||-++|-+|+..+|+=|-|+-.+ |.|-.+.. |.+.|.|+.-|--.|.-.-|+...+..-+++.+|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 359999999999999999999999876555 45545555 6899999999999999999999998888887777
Q ss_pred EEEe
Q 027131 222 SVRV 225 (227)
Q Consensus 222 ~lrv 225 (227)
++.+
T Consensus 214 rVer 217 (382)
T KOG1548|consen 214 RVER 217 (382)
T ss_pred EEeh
Confidence 7654
No 101
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=95.21 E-value=0.051 Score=48.09 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=55.6
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEe---ecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFML---RQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~---d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+++++..+|+..-+.+|..||.-+. +.++.+. .-..|.+.|-|||.|.|++.|+-|-..-|.=.++-.-+-.+|
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~---g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFG---GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcC---CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 4899999999999999999999885 2333332 233467899999999999999988777665555443444444
Q ss_pred c
Q 027131 226 L 226 (227)
Q Consensus 226 l 226 (227)
|
T Consensus 127 m 127 (214)
T KOG4208|consen 127 M 127 (214)
T ss_pred e
Confidence 3
No 102
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.06 E-value=0.056 Score=39.19 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=41.4
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcc--cCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHH
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEY--EASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIR 210 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i--~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~ 210 (227)
.|+|||+ =+-+.+||..||..|-- .|..|.-+-|.. +-|.|.|.+.|.+||..
T Consensus 7 avhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-------cNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 7 AVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-------CNVVFKDEETAARALVA 61 (62)
T ss_pred eEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCCc-------EEEEECCHHHHHHHHHc
Confidence 5999998 56899999999999933 344444443432 99999999999999975
No 103
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=95.04 E-value=0.1 Score=48.62 Aligned_cols=136 Identities=14% Similarity=0.175 Sum_probs=96.8
Q ss_pred EEeCCCCCCCHHHHHHhcCCC-CCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHH-HhC--ccceEEEEEEccccccc
Q 027131 66 KLLGISRQTLKSDIINLLEGC-NLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFR-LIG--RKGRLYRLERAEQSEWD 141 (227)
Q Consensus 66 ~lrgLP~s~~K~DI~~FF~g~-~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~-~lg--~~gRyv~i~~~~~~~~~ 141 (227)
.+-|||-.++.++|+..|+-+ ++.|-||.=. .+||..+++.....|.+ ++| ..|--|.|+.+....
T Consensus 6 FIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs-- 75 (346)
T KOG0109|consen 6 FIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS-- 75 (346)
T ss_pred hccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC--
Confidence 467999999999999999764 5567776543 47999999999999999 444 334455566553221
Q ss_pred cccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 142 IVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 142 ~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
..+ ..+++=|+-+.||..|+..=|.-|. =.+-.|.-- +-|+|.|.--++|..|.+.++.+-..-.+.
T Consensus 76 ---k~s-tkl~vgNis~tctn~ElRa~fe~yg-----pviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 76 ---KAS-TKLHVGNISPTCTNQELRAKFEKYG-----PVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred ---CCc-cccccCCCCccccCHHHhhhhcccC-----Cceeeeeec----ceeEEEEeeccchHHHHhccccccccccee
Confidence 111 2488999999999999999998883 334444321 359999999999999996655543333344
Q ss_pred EEE
Q 027131 222 SVR 224 (227)
Q Consensus 222 ~lr 224 (227)
-++
T Consensus 143 ~vq 145 (346)
T KOG0109|consen 143 HVQ 145 (346)
T ss_pred eee
Confidence 443
No 104
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.02 E-value=0.12 Score=40.45 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=50.6
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCc---eEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCccc
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASS---ISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFC 216 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~---I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~ 216 (227)
+|-|||+|-..|.+++.+.+.-. .++. +.|++|...+...|=|+|-|.|++.|.+-...-+++-.
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~--~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEH--FKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHh--ccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 68999999999999887766433 3344 55556877667889999999999999988877766544
No 105
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=95.00 E-value=0.038 Score=51.08 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=48.6
Q ss_pred ccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC
Q 027131 155 NVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR 213 (227)
Q Consensus 155 gLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~ 213 (227)
=|--.-++||+.+-|..+... +..+++.+++ |.++|-|+|+|.|+.||..|.+.+.+
T Consensus 26 ml~kqq~e~dvrrlf~pfG~~-~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHg 82 (371)
T KOG0146|consen 26 MLNKQQSEDDVRRLFQPFGNI-EECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHG 82 (371)
T ss_pred hhcccccHHHHHHHhcccCCc-ceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcc
Confidence 345567899999999999754 5688888888 47999999999999999999998764
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=94.99 E-value=0.078 Score=35.79 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=28.0
Q ss_pred HHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 80 INLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 80 ~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
.++|+-+. .-..|++..+ . .+.|||+|.|.+|+++|++.+
T Consensus 2 ~~~f~~fG-~V~~i~~~~~--~-~~~a~V~f~~~~~A~~a~~~l 41 (56)
T PF13893_consen 2 YKLFSKFG-EVKKIKIFKK--K-RGFAFVEFASVEDAQKAIEQL 41 (56)
T ss_dssp HHHHTTTS--EEEEEEETT--S-TTEEEEEESSHHHHHHHHHHH
T ss_pred hHHhCCcc-cEEEEEEEeC--C-CCEEEEEECCHHHHHHHHHHh
Confidence 45565554 3344555433 2 689999999999999999955
No 107
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.70 E-value=0.075 Score=41.74 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=33.3
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEE-ecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVN-YTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~-ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
|++.|++-.|+.+||...|+.+. .|.+. |.+ | -.+|+|.|.+.+++++|+..+
T Consensus 4 l~~~g~~~~~~re~iK~~f~~~g----~V~yVD~~~-G-~~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQFG----EVAYVDFSR-G-DTEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-SS------EEEEE--T-T--SEEEEEESS---HHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHhcC----CcceEEecC-C-CCEEEEEECCcchHHHHHHHH
Confidence 89999999999999999999876 44443 332 1 238999999999999999955
No 108
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=94.70 E-value=0.11 Score=40.56 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=47.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCC----cceEEEEeCCHHHHHHHHH-HhCc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYM----PFAMMMQFPSFSAYDNAFR-LIGR 125 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~----~~eAfV~F~S~~d~~~AL~-~lg~ 125 (227)
|.|||+|-..+.+++++.++.. -.+...|.|=+ +.+ .|.|||-|.|.+++.+-.+ +.|+
T Consensus 4 vMirNIPn~~t~~~L~~~l~~~--~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 4 VMIRNIPNKYTQEMLIQILDEH--FKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred EEEecCCCCCCHHHHHHHHHHh--ccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 6899999999999999999664 36778888777 544 4799999999999776665 5555
No 109
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=94.66 E-value=0.1 Score=48.13 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=63.7
Q ss_pred EEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeE
Q 027131 151 VLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVS 222 (227)
Q Consensus 151 V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~ 222 (227)
|.+--|--.++.|+|..=|..|.=+ ++-.++.|...++++|-++|-|..++||++|...-|+-.+|.+.|+
T Consensus 65 vfvgdls~eI~~e~lr~aF~pFGev-S~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAFAPFGEV-SDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred EEehhcchhcchHHHHHHhcccccc-ccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 6677888889999999999999743 5678888888889999999999999999999999999999998886
No 110
>PLN03213 repressor of silencing 3; Provisional
Probab=94.65 E-value=0.1 Score=51.73 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=54.9
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCH--HHHHHHHHHhcC-cccCCceeEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQ--TQAMDAFIRKNR-GFCLNNQVSV 223 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~--e~A~~Al~~~n~-rf~gn~~v~l 223 (227)
+..|++-||+|++|.+||.+-|+.|-=+ .+|.|+ +.. | -|=|||.|.+. .++.+|+...|+ .+.|. +|.|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsV-kdVEIp-RET-G--RGFAFVEMssdddaEeeKAISaLNGAEWKGR-~LKV 82 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTV-DAVEFV-RTK-G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG-RLRL 82 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEe-ccc-C--CceEEEEecCCcHHHHHHHHHHhcCCeecCc-eeEE
Confidence 3469999999999999999999999644 578887 444 3 48999999987 789999986554 45555 5544
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.46 E-value=2.1 Score=41.36 Aligned_cols=158 Identities=14% Similarity=0.171 Sum_probs=103.6
Q ss_pred CCeEE-EEEeCCCCCCCHHH-HHHhcCCCCC-CCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC----ccceE-EE
Q 027131 60 KGVFY-GKLLGISRQTLKSD-IINLLEGCNL-TPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG----RKGRL-YR 131 (227)
Q Consensus 60 ~~~~y-v~lrgLP~s~~K~D-I~~FF~g~~I-~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg----~~gRy-v~ 131 (227)
.+..| +.++||--+-.-.| +-|.| |-- ....|+|.-+ .++.|+||+.+..++++|+.++. .-+++ ++
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~--ClYGNV~rvkFmkT---k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLF--CLYGNVERVKFMKT---KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhh--hhcCceeeEEEeec---ccceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 34455 78999876654444 22333 222 3478888765 47889999999999999999663 11222 33
Q ss_pred EEEccc---c-------------ccc-cc------------c--CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceE
Q 027131 132 LERAEQ---S-------------EWD-IV------------M--PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSIS 180 (227)
Q Consensus 132 i~~~~~---~-------------~~~-~~------------~--~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~ 180 (227)
+.+.+- . ++. .+ . ...-.+++.=|-|-.+|+|....-|.-.++.|.+|.
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 322111 0 000 00 0 011247889999999999999999999999999999
Q ss_pred EEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc----cCCceeEEE
Q 027131 181 FMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF----CLNNQVSVR 224 (227)
Q Consensus 181 l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf----~gn~~v~lr 224 (227)
++-.-. +-+-..+..|++.++|..|+-+.|--+ -|..+-.|.
T Consensus 439 vFp~ks--erSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilK 484 (494)
T KOG1456|consen 439 VFPLKS--ERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILK 484 (494)
T ss_pred eecccc--cccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeee
Confidence 886433 333446889999999999999988543 344444443
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.24 E-value=0.056 Score=47.66 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=47.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
.+.|++=|||-++...||++-|+-|.=+ -.|.|-..++ |..-|+|.|+...||+.|+--.+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i-~~ieLK~r~g---~ppfafVeFEd~RDAeDAiygRd 66 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRI-REIELKNRPG---PPPFAFVEFEDPRDAEDAIYGRD 66 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcce-EEEEeccCCC---CCCeeEEEecCccchhhhhhccc
Confidence 3579999999999999999999998533 1244444443 55689999999999999987554
No 113
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=93.81 E-value=0.14 Score=49.52 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=48.6
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCC-CCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHH
Q 027131 65 GKLLGISRQTLKSDIINLLEGCN-LTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~-I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~ 121 (227)
++++|||.+++..+|.++|..+. |.+++|-..- +++. +-.|||+|.+-++++.|+.
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~-~~~~~~~fgFV~f~~~~~~~~~i~ 348 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS-PGGKNPCFGFVEFENAAAVQNAIE 348 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEec-cCCCcCceEEEEEeecchhhhhhh
Confidence 89999999999999999998775 5789998865 4343 4799999999999999999
No 114
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.65 E-value=0.072 Score=50.29 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=60.0
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCC-------ceEEEeecCCCCcceeEEEEcCCHHHHHHHHHH-hcCcccCCce
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEAS-------SISFMLRQSLPDSIKWATVRFPSQTQAMDAFIR-KNRGFCLNNQ 220 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~-------~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~-~n~rf~gn~~ 220 (227)
-+|.++++|-+++..+|.+||.=|.++-- .|.|-.|-..++|+|+|+|.|.+..-|..|..- .++.||+| .
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn-~ 145 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN-T 145 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC-C
Confidence 47999999999999999999999987642 255555655578999999999999999999764 56779984 6
Q ss_pred eEE
Q 027131 221 VSV 223 (227)
Q Consensus 221 v~l 223 (227)
|.+
T Consensus 146 ikv 148 (351)
T KOG1995|consen 146 IKV 148 (351)
T ss_pred chh
Confidence 543
No 115
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=93.64 E-value=0.063 Score=47.70 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=48.0
Q ss_pred EEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCce
Q 027131 151 VLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQ 220 (227)
Q Consensus 151 V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~ 220 (227)
|++-+||+.+.++|+++||.||-=+ ..|-+..+ -++|.|.+..+|..|....|+.-++-..
T Consensus 4 v~vg~~~~~~~~~d~E~~f~~yg~~-~d~~mk~g--------f~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 4 VYIGRLPYRARERDVERFFKGYGKI-PDADMKNG--------FGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred eeecccCCccchhHHHHHHhhcccc-ccceeecc--------cceeccCchhhhhcccchhcCceeccee
Confidence 8899999999999999999999533 23333322 2599999999999999988877665533
No 116
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=93.27 E-value=0.089 Score=49.00 Aligned_cols=142 Identities=15% Similarity=0.056 Sum_probs=93.7
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCcc-eEEEEeCCHHHHHHHHH--HhCccceEEEEEEcccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMPF-AMMMQFPSFSAYDNAFR--LIGRKGRLYRLERAEQSEW 140 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~~-eAfV~F~S~~d~~~AL~--~lg~~gRyv~i~~~~~~~~ 140 (227)
|.+-|||.+++++|.+++|+-+. ...++-+-||. ..++. =+||.|.+++++++++. ++...++-+++.+....+.
T Consensus 100 iFvGG~~~~~~e~~~r~yfe~~g-~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 100 IFVGGLPPDTTEEDFKDYFEQFG-KVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred EEecCcCCCCchHHHhhhhhccc-eeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchhh
Confidence 56669999999999999999998 55556666666 66665 69999999999999999 5567778888876655442
Q ss_pred cccc-----CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEe------ecCCCCcceeEEEEcCCHHHHHHHHH
Q 027131 141 DIVM-----PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFML------RQSLPDSIKWATVRFPSQTQAMDAFI 209 (227)
Q Consensus 141 ~~~~-----~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~------d~~~g~ptGeA~V~F~S~e~A~~Al~ 209 (227)
.... ...+.+ +++...+.-..--+|.|+.... +.-.+ ..+...+.|.++..|.+......+..
T Consensus 179 ~~~~~~~~~~~~~~~----~~g~~~~~~~l~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 252 (311)
T KOG4205|consen 179 MQSTKSSVSTRGKGN----NLGNGRTGFFLKKYFKGYGPVG--MSDYGGRPVGRRYGPLFNGGSGYPEFGNSGLGFGYGN 252 (311)
T ss_pred ccccccccccccccc----cccccccccccchhccccCccc--cccccccccccccccccCCCccccccCcccccccccc
Confidence 2111 111222 5555555555556677774332 21111 11101256789999987777776666
Q ss_pred HhcC
Q 027131 210 RKNR 213 (227)
Q Consensus 210 ~~n~ 213 (227)
..++
T Consensus 253 ~~~~ 256 (311)
T KOG4205|consen 253 KLNR 256 (311)
T ss_pred ccCC
Confidence 5554
No 117
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=93.18 E-value=0.25 Score=44.06 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=53.3
Q ss_pred EEEEeccCCCCCHHHHHH----ccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 150 TVLLQNVPRIAVAEDVER----FLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~----FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
+++|+||+=...++|+.+ -|+-|.= ..+|..+-. ++-.|-|+|.|.+.+.|-+|++..++-+.--.++++
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~-ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGK-ILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCC-eEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 999999999999999999 8888841 123433322 456689999999999999999987765544445544
No 118
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=93.12 E-value=0.18 Score=39.20 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=39.2
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.+++.|||-+....-|..=+.-+.=.=.|=.+-. .+ |.|.|+|.|++.|.+|.....+--..-|.|+++
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-~~-----~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-SG-----GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---T-----T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-eC-----CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4789999999998888765553311111211111 12 359999999999999998876554444488876
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.92 E-value=0.14 Score=48.41 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=45.3
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
.+++|.||=-.++..||.++|+-|.=. .+|.++.+.+ =|||+|+|++.|++|..+.-
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGei-rsi~~~~~~~------CAFv~ftTR~aAE~Aae~~~ 285 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEI-RSIRILPRKG------CAFVTFTTREAAEKAAEKSF 285 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCe-eeEEeecccc------cceeeehhhHHHHHHHHhhc
Confidence 479999997799999999999999522 2455554443 49999999999999987743
No 120
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.34 E-value=0.044 Score=48.09 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=63.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
|-..|+|=||||.-|.-||.--|+-|. .+-+|.|..|-..|++.|=||.....+....-|+...|+--++-.-|
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyG-e~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYG-EIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccC-ceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeE
Confidence 345799999999999999999999997 44579999999889999999999999999988888877766655444
No 121
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=92.05 E-value=0.13 Score=50.06 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=50.8
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHH
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~ 121 (227)
.+-+. .+.-|++.|++.||+.-|+.+.+. +++.++-|.+|-. |-|||.|.+++.+..|++
T Consensus 123 ~e~KL--Fvg~lsK~~te~evr~iFs~fG~I-ed~~ilrd~~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 123 EERKL--FVGMLSKQCTENEVREIFSRFGHI-EDCYILRDPDGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred cchhh--hhhhccccccHHHHHHHHHhhCcc-chhhheecccccccceeEEEEehHHHHHHHHH
Confidence 34444 456699999999999999999854 5688888888876 589999999999999999
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=91.17 E-value=0.33 Score=44.50 Aligned_cols=122 Identities=14% Similarity=0.110 Sum_probs=74.0
Q ss_pred cCCCC-cceEEEEeCCHHHHHHHHH-----HhCccceEEEEEEcccccccccc--CCCCcEEEEeccCCC--CCHHHHHH
Q 027131 98 TRNYM-PFAMMMQFPSFSAYDNAFR-----LIGRKGRLYRLERAEQSEWDIVM--PYNGKTVLLQNVPRI--AVAEDVER 167 (227)
Q Consensus 98 dr~g~-~~eAfV~F~S~~d~~~AL~-----~lg~~gRyv~i~~~~~~~~~~~~--~~~g~~V~LrgLPf~--~tkeEI~~ 167 (227)
++.+. .+++|+.|+--....+|.. ++|. +-|++ ...+.|.-.. ..+.---+|++==++ ++.+=..+
T Consensus 134 ~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~--~~VR~--a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~r 209 (290)
T KOG0226|consen 134 DRPQPIRPEAFESFKASDALLKAETEKEKKKIGK--PPVRL--AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLAR 209 (290)
T ss_pred cCCCccCcccccCcchhhhhhhhccccccccccC--cceee--ccccccCCcccccCccccceeecccccccccHHHHHH
Confidence 44333 5799999998887777765 3332 22332 2222233111 011111233333333 55555555
Q ss_pred ccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 168 FLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 168 FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
=|.-|. .=.+-....|-..|+..|--||-|.+.+++.+||++-|+++.||.+|-||
T Consensus 210 af~Kfp-sf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 210 AFKKFP-SFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred HHHhcc-chhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 555442 11122333455667899999999999999999999999999999999887
No 123
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=90.43 E-value=0.34 Score=33.50 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=37.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHH
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAF 120 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL 120 (227)
.+|-+.|.|-+.. ++|+.+|+.|.= -.++.+ +..+..++|.|.++.++++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGe-I~~~~~----~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGE-IVDIYV----PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCC-EEEEEc----CCCCcEEEEEECCHHHHHhhC
Confidence 3578899997766 478888887651 122333 234568999999999999996
No 124
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=89.06 E-value=0.53 Score=45.09 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=56.5
Q ss_pred CCCeE-EEEEeCCCCCCCHHHHHHhcCCCCCC-CCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC
Q 027131 59 TKGVF-YGKLLGISRQTLKSDIINLLEGCNLT-PDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 59 ~~~~~-yv~lrgLP~s~~K~DI~~FF~g~~I~-~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg 124 (227)
++|+- |.++-||-|-+|.+|+.+=..-..+. --+|||.-|| +|.. |.|+|...|+..+++-++.+-
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP 145 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP 145 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc
Confidence 45554 49999999999999999999887775 4789999999 8875 699999999999999999664
No 125
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=88.51 E-value=0.92 Score=31.33 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=35.7
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHH
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAF 208 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al 208 (227)
.|-+.|.|.+.. ++|.++|+-| ..|.=.+-.. -+-.++|+|.++.+|++||
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~f----GeI~~~~~~~---~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASF----GEIVDIYVPE---STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhc----CCEEEEEcCC---CCcEEEEEECCHHHHHhhC
Confidence 578899997765 6677788766 2343333221 1236999999999999996
No 126
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=87.87 E-value=2.3 Score=39.94 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=59.4
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeE
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVS 222 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~ 222 (227)
+++.|=-|+|+.+..+|.+-|.-|-=+ ..|.|+.|.-.|+|.|=|||.|..+.+-..|+..-.+--.-...|.
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~I-krirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPI-KRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcc-eeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 579999999999999999999998644 3699999966689999999999999998888877654443333443
No 127
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=87.84 E-value=2.3 Score=41.16 Aligned_cols=144 Identities=10% Similarity=0.109 Sum_probs=103.2
Q ss_pred CeEE-EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCC-cceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEE
Q 027131 61 GVFY-GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYM-PFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLER 134 (227)
Q Consensus 61 ~~~y-v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~-~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~ 134 (227)
..+| |++-.+.|...++-|+.=|.-+. .-..|.+-+|. .+. -+=|||+.+=.+.++.||+.| | .-||-+++-.
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFG-PIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFG-PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCC-CcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 4577 99999999999999999998887 56788898888 666 578999999999999999965 3 4467776643
Q ss_pred ccccc-----ccc----ccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHH
Q 027131 135 AEQSE-----WDI----VMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAM 205 (227)
Q Consensus 135 ~~~~~-----~~~----~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~ 205 (227)
-.+-. .|. .+.|+ -||+-.+-.+-+.+||.--|.-|.=. -.-.|-.++.++.-.|-.++.|.+.+.-.
T Consensus 190 PsNmpQAQpiID~vqeeAk~fn--RiYVaSvHpDLSe~DiKSVFEAFG~I-~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFN--RIYVASVHPDLSETDIKSVFEAFGEI-VKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhh--eEEeeecCCCccHHHHHHHHHhhcce-eeEEeeccCCCCCccceeeEEeccccchH
Confidence 32211 111 12343 38899999999999999999988311 12233345665566788999997654333
Q ss_pred HHH
Q 027131 206 DAF 208 (227)
Q Consensus 206 ~Al 208 (227)
.|.
T Consensus 267 eAi 269 (544)
T KOG0124|consen 267 EAI 269 (544)
T ss_pred HHh
Confidence 333
No 128
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=87.77 E-value=2.9 Score=43.29 Aligned_cols=68 Identities=7% Similarity=0.048 Sum_probs=54.6
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC---CCC-cc-eEEEEeCCHHHHHHHHHHhCccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR---NYM-PF-AMMMQFPSFSAYDNAFRLIGRKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr---~g~-~~-eAfV~F~S~~d~~~AL~~lg~~gRyv~i~~~ 135 (227)
+++-||+-+++..++..=|..+. +.-+|++.|-| +.+ .. -+||-|-+..|+++|++.+ +|++|+-++.
T Consensus 177 lyv~Nlnpsv~E~~ll~tfGrfg-PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~l--qg~iv~~~e~ 249 (877)
T KOG0151|consen 177 LYVGNLNPSVDENFLLRTFGRFG-PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKEL--QGIIVMEYEM 249 (877)
T ss_pred eeeecCCccccHHHHHHHhcccC-cccceeeecccchhhhccccccceeeehhhhhHHHHHHHh--cceeeeeeee
Confidence 78999999999999999997776 67889999888 333 44 6999999999999999988 3355544433
No 129
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=87.44 E-value=0.22 Score=43.85 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=62.1
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEE
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLE 133 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~ 133 (227)
..+-.||++=||||..|.-||+--|+.+.- .-+|.+.-|. .|.+ |=||+-.+....--.|...+ | ..||-++|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe-~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGE-IVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCc-eEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 456789999999999999999999999874 3557777776 6665 67999999998887787744 3 678999987
Q ss_pred Ecc
Q 027131 134 RAE 136 (227)
Q Consensus 134 ~~~ 136 (227)
-+.
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 664
No 130
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=86.90 E-value=0.82 Score=43.35 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=48.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCC---C----CCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHH
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLT---P----DDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~---~----d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~ 121 (227)
|.+.+||-++++.+|..||.-|+|. + --|++-.|+ .+++ ++|.|-|.+...++.|..
T Consensus 69 i~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~ 134 (351)
T KOG1995|consen 69 IFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIE 134 (351)
T ss_pred ceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhh
Confidence 6889999999999999999999993 2 236666666 6776 699999999999999988
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=86.89 E-value=2.4 Score=30.72 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=37.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL 122 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~ 122 (227)
+||||+- +.+-+||++||.+.-=.....++..=. -..+=|.|.|.+.+.+||..
T Consensus 8 vhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWId---DtScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 8 VHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWID---DTSCNVVFKDEETAARALVA 61 (62)
T ss_pred EEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEec---CCcEEEEECCHHHHHHHHHc
Confidence 6999984 577889999999882111222222111 24688999999999999974
No 132
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=85.31 E-value=0.49 Score=43.12 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=32.0
Q ss_pred ecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 184 RQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 184 d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
+..+..-.|-++|+|.++|+|++|+...|.|+-.-.||-.
T Consensus 103 ~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~a 142 (260)
T KOG2202|consen 103 DNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHA 142 (260)
T ss_pred cccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCccee
Confidence 3333456688999999999999999999999887767643
No 133
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=83.89 E-value=3.2 Score=41.90 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=47.7
Q ss_pred CCeEE-EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC
Q 027131 60 KGVFY-GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 60 ~~~~y-v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg 124 (227)
..+.| |-||-+|=+.-.+||+..|++=+... =|-..|. ....+||.|+|+.|++.|.+++.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk-~iscefa---~N~nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPK-VISCEFA---HNDNWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCC-ceeeeee---ecCceEEEeecchhHHHHHHHHH
Confidence 66788 89999999999999999999866532 2333221 13469999999999999999664
No 134
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=80.75 E-value=5.8 Score=38.49 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=52.9
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg 124 (227)
.|..|-|..+|++..+..+.+-++..-.|++.-.+.-|+.+.++||++.+|+..||..+.
T Consensus 409 LHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~N 468 (494)
T KOG1456|consen 409 LHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLN 468 (494)
T ss_pred eEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhc
Confidence 588999999999999999988888888888877677778899999999999999998554
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=79.89 E-value=4.3 Score=38.77 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=43.9
Q ss_pred CCCCCeEE-EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHH
Q 027131 57 TPTKGVFY-GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 57 sp~~~~~y-v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~ 121 (227)
+|.+...= .+|.||-=.++..||.++|--|. .-.-|.+... -+=|||+|.|.++++.|..
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyG-eirsi~~~~~----~~CAFv~ftTR~aAE~Aae 282 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYG-EIRSIRILPR----KGCAFVTFTTREAAEKAAE 282 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcC-CeeeEEeecc----cccceeeehhhHHHHHHHH
Confidence 33333333 78889866999999999998876 2334444331 2379999999999999998
No 136
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=79.76 E-value=3 Score=32.77 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=43.1
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEE---------eecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFM---------LRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~---------~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
...|.+=|+|-. ....|.+.|+-|--+-+...++ -.+.+ ....-++|.|+.+|.+||++|+.-+.|+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~---~NWi~I~Y~~~~~A~rAL~~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG---GNWIHITYDNPLSAQRALQKNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CC---TTEEEEEESSHHHHHHHHTTTTEEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCC---CCEEEEECCCHHHHHHHHHhCCeEEcCc
Confidence 456888899988 5667888888874221111000 01122 2489999999999999999999887776
No 137
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=77.60 E-value=3.3 Score=36.43 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=52.7
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
+.+|++-||+-.+|++=+..-|--..=+ -.|++.-|.-...+-|=+||+|.++|||.=|..-.|.-=|=+.+|.+
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpV-v~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPV-VNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCce-eeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 5799999999999999998887655311 12444444322346678999999999999998877743333334433
No 138
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=77.50 E-value=1.8 Score=34.78 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=30.8
Q ss_pred EEEEeccCC---------CCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHH
Q 027131 150 TVLLQNVPR---------IAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQT 202 (227)
Q Consensus 150 ~V~LrgLPf---------~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e 202 (227)
+|-|.|+|- ..+.+++.+.|+.| .|..|..+++..+ .+|.|+|.|.+--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f--~p~kv~~l~~~~g--h~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEF--NPLKVKPLYGKQG--HTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH-----SEEEEEEETTE--EEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhc--CCceeEECcCCCC--CcEEEEEEECCCh
Confidence 355566644 35779999999995 8889999999883 7899999998753
No 139
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=77.17 E-value=4.4 Score=37.78 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=50.4
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCc
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRG 214 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~r 214 (227)
|+-+.|=.||-.-...|+.+-|..|.-+- +-.+++|.-...++--.+|-|.+...|..|...-|+=
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PFGhiv-SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGF 350 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPFGHIV-SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF 350 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhcccccee-eeeeeehhccccccceeeEecCCchhHHHHHHHhcch
Confidence 44488999999999999999999996432 3445555333445556799999999999998887764
No 140
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=76.16 E-value=6.8 Score=40.95 Aligned_cols=116 Identities=11% Similarity=0.142 Sum_probs=73.0
Q ss_pred CCCeEE---EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC---ccceEEEE
Q 027131 59 TKGVFY---GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG---RKGRLYRL 132 (227)
Q Consensus 59 ~~~~~y---v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg---~~gRyv~i 132 (227)
..-.+| +-|-+||.+++..|+.+.|+.|. ....|.+.-+ -+-|||.+.+.+|+.+||..|. -..+-|+|
T Consensus 415 d~isV~SrTLwvG~i~k~v~e~dL~~~feefG-eiqSi~li~~----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGIPKNVTEQDLANLFEEFG-EIQSIILIPP----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred cceeEeeeeeeeccccchhhHHHHHHHHHhcc-cceeEeeccC----CceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 566788 77789999999999999999998 4455655432 3579999999999999999663 11122322
Q ss_pred EE-cc---ccccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEE
Q 027131 133 ER-AE---QSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFM 182 (227)
Q Consensus 133 ~~-~~---~~~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~ 182 (227)
.= ++ +++| +..+| .-.-+-=+|+.--+.|.+.|+.|=.++..+.-..
T Consensus 490 ~Wa~g~G~kse~--k~~wD-~~lGVt~IP~~kLt~dl~~~~egam~d~~t~~p~ 540 (894)
T KOG0132|consen 490 AWAVGKGPKSEY--KDYWD-VELGVTYIPWEKLTDDLEAWCEGAMLDGTTGPPE 540 (894)
T ss_pred eeeccCCcchhh--hhhhh-cccCeeEeehHhcCHHHHHhhhhceecCccCCcc
Confidence 10 00 1111 11122 0011223577777777888888877665554443
No 141
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=75.18 E-value=24 Score=36.20 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=57.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC--CCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR--NYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQSE 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr--~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~~ 139 (227)
.-|.||+-.+..+|+++.|+.+. ..-|-++..|- -|.--..||.+.|-+++.+++.++ . ..||.|.|++..+..
T Consensus 408 lWVSGLSstTRAtDLKnlFSKyG-KVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp 486 (940)
T KOG4661|consen 408 LWVSGLSSTTRATDLKNLFSKYG-KVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEP 486 (940)
T ss_pred eeeeccccchhhhHHHHHHHHhc-ceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCc
Confidence 56789999999999999999887 44566666653 333338999999999999999955 2 678999998776543
No 142
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=74.29 E-value=4.8 Score=36.99 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=53.1
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEe-ecCCCCcceeEEEEcCCHHHHHHHHHHhc-CcccCC
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFML-RQSLPDSIKWATVRFPSQTQAMDAFIRKN-RGFCLN 218 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~-d~~~g~ptGeA~V~F~S~e~A~~Al~~~n-~rf~gn 218 (227)
..++++||+-.|+-|...+=|+-+- |.+-.+.+ |.. |+++|+-.|.|...-.|.+|+..-+ +.|.||
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg--~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~ 100 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFG--PIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGT 100 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcC--ccchheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccC
Confidence 4699999999999999999999773 33333333 555 5999999999999999999988764 556655
No 143
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=74.20 E-value=8 Score=39.17 Aligned_cols=130 Identities=20% Similarity=0.299 Sum_probs=77.8
Q ss_pred CCCCHHHHHHhcCCCCCCCCCeEEE-ecC-CCCcceEEEEe----CCHHHHHHHHHHhCccceEEEEEEccccccccccC
Q 027131 72 RQTLKSDIINLLEGCNLTPDDLKVN-YTR-NYMPFAMMMQF----PSFSAYDNAFRLIGRKGRLYRLERAEQSEWDIVMP 145 (227)
Q Consensus 72 ~s~~K~DI~~FF~g~~I~~d~I~~~-ydr-~g~~~eAfV~F----~S~~d~~~AL~~lg~~gRyv~i~~~~~~~~~~~~~ 145 (227)
+.++|+.+.-+|+.=||..|--.+. .|. .+.|--..-.| +.--|++.-++.+ +.--.|++++=+- -+.+
T Consensus 97 kq~lk~qlEy~fSreNlssD~YL~sQMDSDqyVPI~tva~~~~i~klttDvdLI~Evl-resp~VqvDekge----kVrp 171 (684)
T KOG2591|consen 97 KQLLKKQLEYYFSRENLSSDRYLISQMDSDQYVPINTVANFPEIMKLTTDVDLIVEVL-RESPNVQVDEKGE----KVRP 171 (684)
T ss_pred HHHHHHHHHHhhccccccchhhhhhhcccccccchhhhccchhhhhhccchHHHHHHH-hcCCCceeccCcc----cccc
Confidence 4477777778888888865443332 333 23332222222 2223333333333 1112333322211 1112
Q ss_pred CCCc-EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 146 YNGK-TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 146 ~~g~-~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
.-++ +|.||-+|=+...|+|.--|.|=+ -|.-|...+....+ =+|.|.|.+||..|+.-++
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~en-cPk~iscefa~N~n-----WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGEN-CPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCC-CCCceeeeeeecCc-----eEEEeecchhHHHHHHHHH
Confidence 2234 588999999999999999999965 45668888877654 7999999999998875443
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=71.34 E-value=8.4 Score=30.02 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=33.1
Q ss_pred EEEeCCCCCCCHHHHHHhcC----CCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 65 GKLLGISRQTLKSDIINLLE----GCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~----g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
+++.|||-+....-|.+-+. +|.= +++-- ..+.|.|.|.|.+.+++|++-|
T Consensus 5 L~V~NLP~~~d~~~I~~RL~qLsdNCGG-----kVl~v---~~~tAilrF~~~~~A~RA~KRm 59 (90)
T PF11608_consen 5 LYVSNLPTNKDPSSIKNRLRQLSDNCGG-----KVLSV---SGGTAILRFPNQEFAERAQKRM 59 (90)
T ss_dssp EEEES--TTS-HHHHHHHHHHHHHTTT-------EEE-----TT-EEEEESSHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHhhccCC-----EEEEE---eCCEEEEEeCCHHHHHHHHHhh
Confidence 68999999998888776554 6641 11110 1258999999999999999944
No 145
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=70.23 E-value=7.2 Score=30.59 Aligned_cols=66 Identities=6% Similarity=0.064 Sum_probs=40.7
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEec-------CCCC-cceEEEEeCCHHHHHHHHHHhCc
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYT-------RNYM-PFAMMMQFPSFSAYDNAFRLIGR 125 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~yd-------r~g~-~~eAfV~F~S~~d~~~AL~~lg~ 125 (227)
...+.+|-+.|.|-+ ....|++.|+.|.-..+....+-+ .... ..=.-|.|.|..++.+||+..|+
T Consensus 3 ~~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~ 76 (100)
T PF05172_consen 3 QDSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGT 76 (100)
T ss_dssp -GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTE
T ss_pred CcCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCe
Confidence 355678999999999 556999999998743222211111 1111 12478999999999999997663
No 146
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=69.74 E-value=9.7 Score=39.88 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=50.4
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
.++.|-+||-+++.+|+.+-|.-|.=+ .+|.+.-. -|-|||...++++|.+|+.+.+.--.+...|.+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGei-qSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEI-QSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccc-eeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 379999999999999999999999533 23443322 245999999999999999987644333334433
No 147
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=68.54 E-value=8.8 Score=38.18 Aligned_cols=59 Identities=15% Similarity=-0.006 Sum_probs=39.9
Q ss_pred HHHHHccCCCcccCCceEEEeecCC---CCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeE
Q 027131 163 EDVERFLSGCEYEASSISFMLRQSL---PDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVS 222 (227)
Q Consensus 163 eEI~~FFsG~~i~p~~I~l~~d~~~---g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~ 222 (227)
|||.+=+++|..+ .+|.+...... .-.+|..||+|.|-++|.+|+.+.++|=-.|+.|-
T Consensus 424 Edvr~ec~k~g~v-~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVv 485 (500)
T KOG0120|consen 424 EDVRTECAKFGAV-RSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVV 485 (500)
T ss_pred HHHHHHhcccCce-eEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEE
Confidence 4455556677543 23333333111 12458899999999999999999999988887663
No 148
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=67.55 E-value=12 Score=37.47 Aligned_cols=59 Identities=5% Similarity=0.117 Sum_probs=45.8
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL 122 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~ 122 (227)
....++-|-|||-+++.+|+..-|+-+. ...+|..+-++ -+-.||+|-+..+++.||+-
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yG-eir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~ 131 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYG-EIREIRETPNK---RGIVFVEFYDVRDAERALKA 131 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhc-chhhhhccccc---CceEEEEEeehHhHHHHHHH
Confidence 4556778999999999999999997664 22336554432 24689999999999999993
No 149
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=64.51 E-value=10 Score=30.51 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=36.3
Q ss_pred HHhcCCCCCC-CCCeEEEecCCCCcceEEEEeCCHHHHHHHHH
Q 027131 80 INLLEGCNLT-PDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 80 ~~FF~g~~I~-~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~ 121 (227)
++||.|.+=. .-+|+++-+++|.+|-|...|...+.+++--.
T Consensus 1 IQF~~Gi~E~~ip~VrLtRsrdg~~g~a~f~F~~p~al~~~~~ 43 (109)
T TIGR03047 1 IQFFRGIDEEVIPDVRLTRSRDGGTGTALFRFENPKALDKFNS 43 (109)
T ss_pred CccccCCCCCcCCceEEEEccCCCceEEEEEECCchhhhhccc
Confidence 4799998875 68999999999999999999999998776443
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=62.90 E-value=5.5 Score=41.82 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=49.1
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHH
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~ 121 (227)
|+.=|-++|.|+.+||++....+++..- +-+...+..+.|.| |-|+|.|.++.+..++..
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~ 795 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTVRAGKPKGKARVDYNTEADASRKVA 795 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCC-ccccchhhhhccccccceeccCCCcchhhhhcc
Confidence 3444678999999999999999988764 44444777788887 689999999999999887
No 151
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=61.72 E-value=11 Score=30.51 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=36.7
Q ss_pred HHhcCCCCCC-CCCeEEEecCCCCcceEEEEeCCHHHHHHHHH
Q 027131 80 INLLEGCNLT-PDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 80 ~~FF~g~~I~-~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~ 121 (227)
++||.|.+=. .-+|+++-+++|.+|-|...|+..+.+++-..
T Consensus 4 IQF~~Gi~E~~ip~VrLtRsrdg~~g~a~f~F~~p~al~~~~~ 46 (113)
T CHL00128 4 IQFIKGIDEEVIPDVRLTRSRDGSTGTATFRFKNPNILDKSTA 46 (113)
T ss_pred EEEecCCCCCcCCceEEEEccCCCceEEEEEECCchhhhhccc
Confidence 6899998875 68999999999999999999999998776443
No 152
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=60.61 E-value=30 Score=34.59 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=101.6
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCC------CCCCeEEEecC-CCCcceEEEEeCCHHHHHHHHHHhC--ccceEEEEEE-
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNL------TPDDLKVNYTR-NYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLYRLER- 134 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I------~~d~I~~~ydr-~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~- 134 (227)
+++-|+|+.+..+...+||..--. +..|=+|.... +--..-||++|.|.+++..|+.+.+ .+|+-.++.+
T Consensus 178 ~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~ 257 (500)
T KOG0120|consen 178 LYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRP 257 (500)
T ss_pred hcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCCceeccc
Confidence 578899999999999999965422 23333444333 4456789999999999999999555 4444333211
Q ss_pred ccccc-------------cccc--c--CC-CCcEEEEeccCCCCCHHH---HHHccCCCcccCCceEEEeecCCCCccee
Q 027131 135 AEQSE-------------WDIV--M--PY-NGKTVLLQNVPRIAVAED---VERFLSGCEYEASSISFMLRQSLPDSIKW 193 (227)
Q Consensus 135 ~~~~~-------------~~~~--~--~~-~g~~V~LrgLPf~~tkeE---I~~FFsG~~i~p~~I~l~~d~~~g~ptGe 193 (227)
..... .++. . .+ +..-+.+=|||...++.. +.+=|.+| .+..++.+...|-.+|-
T Consensus 258 ~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l----k~f~lv~d~~~g~skg~ 333 (500)
T KOG0120|consen 258 HDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL----KAFRLVKDSATGNSKGF 333 (500)
T ss_pred ccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc----hhheeecccccccccce
Confidence 11100 0000 0 11 223378888998888764 44555555 24555555444578899
Q ss_pred EEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 194 ATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 194 A~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
|+-.|.+...+..|..-.|+-=+|-+.+.+
T Consensus 334 af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 334 AFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred eeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 999999999999999988888777545444
No 153
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=59.90 E-value=13 Score=31.27 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=40.3
Q ss_pred HHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 164 DVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 164 EI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++.+-|+.|. .+. +.+.-++ .-.|.|.+-+.|.+|+.+++-..||. .+.+|+
T Consensus 52 ~ll~~~~~~G----evv-LvRfv~~----~mwVTF~dg~sALaals~dg~~v~g~-~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQYG----EVV-LVRFVGD----TMWVTFRDGQSALAALSLDGIQVNGR-TLKIRL 103 (146)
T ss_dssp HHHHHHHCCS-----EC-EEEEETT----CEEEEESSCHHHHHHHHGCCSEETTE-EEEEEE
T ss_pred HHHHHHHhCC----ceE-EEEEeCC----eEEEEECccHHHHHHHccCCcEECCE-EEEEEe
Confidence 6778887773 233 3343323 49999999999999999999999888 888876
No 154
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=59.74 E-value=7.8 Score=38.84 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=54.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
.-+++.|=|||..++.+|+.+-|.-|.=+- +|+...... |-.+|.|-+-.+|.+|+...|++=..+.++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir-~ir~t~~~~-----~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIR-EIRETPNKR-----GIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchh-hhhcccccC-----ceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 345899999999999999999999885332 355554433 359999999999999999999876655443
No 155
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=59.13 E-value=8.8 Score=36.21 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=25.4
Q ss_pred EEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 194 ATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 194 A~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
-||+|...++|.+|+...|+||.|-.-|
T Consensus 332 iFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 332 IFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred eeeeeccHHHHHHHHHhcCCceecceee
Confidence 5799999999999999999999998544
No 156
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=59.08 E-value=9.6 Score=30.87 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=35.9
Q ss_pred HHHhcCCCCCC-CCCeEEEecCCCCcceEEEEeCCHHHHHH
Q 027131 79 IINLLEGCNLT-PDDLKVNYTRNYMPFAMMMQFPSFSAYDN 118 (227)
Q Consensus 79 I~~FF~g~~I~-~d~I~~~ydr~g~~~eAfV~F~S~~d~~~ 118 (227)
-++||.|.+=. .-+|+++-+++|.+|-|...|+..+.+..
T Consensus 9 ~IQF~~Gi~E~~vp~VrLtRsrdG~tG~A~f~F~~p~~l~~ 49 (113)
T PRK13610 9 AIQFVKGENEKDQPEIRLFRNLDGKKGKAVYKFYKPKTITL 49 (113)
T ss_pred EEEEecCCCCCcCCceEEEEccCCCccEEEEEECCchhccc
Confidence 36899998875 68999999999999999999999998777
No 157
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=58.02 E-value=6 Score=36.30 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=19.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFML 183 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~ 183 (227)
+.-+++| |.+||.+||.|+++.+.||.-.-
T Consensus 211 ~~~~~~R------s~~ei~~~f~g~elvePGlv~~~ 240 (267)
T PF04672_consen 211 GSPGRPR------SREEIAAFFDGLELVEPGLVPVP 240 (267)
T ss_dssp CS----B-------HHHHHHCCTTSEE-TT-SEEGG
T ss_pred CCCceec------CHHHHHHHcCCCccCCCceeccc
Confidence 3345666 89999999999999999988764
No 158
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=58.00 E-value=17 Score=35.33 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=63.4
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeE
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVS 222 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~ 222 (227)
-||+-.+-|...++-|.+=|..|.=. .+|.+-+|+-.|+-+|-|||.++-+|.|.-|+.--|+-.+|-+-|-
T Consensus 115 RvYVGSIsfEl~EDtiR~AF~PFGPI-KSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiK 186 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRAFDPFGPI-KSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 186 (544)
T ss_pred heeeeeeEEEechHHHHhhccCCCCc-ceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccc
Confidence 48999999999999999999999644 4688888988888999999999999999999999999988876554
No 159
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.83 E-value=46 Score=33.00 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=54.1
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF 215 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf 215 (227)
+..+.|-.+|-..|.-|+.+|..-+.=.-..|.++.|... --=+++++|.++++|..=..+-|++-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~ 139 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQ 139 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCc
Confidence 5678899999999999999999977666667888875332 22489999999999999998877753
No 160
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=57.32 E-value=74 Score=24.69 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=40.7
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR 213 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~ 213 (227)
+++-+|. +|-.=...||.+-|+.| ..|++-.=.+. .|+|....+++|..|++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspf----G~I~VsWi~dT-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPF----GQIYVSWINDT-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCC----CCEEEEEECTT-----EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccC----CcEEEEEEcCC-----cEEEEeecHHHHHHHHHHhcc
Confidence 4566665 99999999999999999 45666653332 499999999999999887754
No 161
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=55.76 E-value=12 Score=30.18 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=35.5
Q ss_pred HHhcCCCCCC-CCCeEEEecCCCCcceEEEEeCCHHHHHHH
Q 027131 80 INLLEGCNLT-PDDLKVNYTRNYMPFAMMMQFPSFSAYDNA 119 (227)
Q Consensus 80 ~~FF~g~~I~-~d~I~~~ydr~g~~~eAfV~F~S~~d~~~A 119 (227)
++||.|.+=. .-+|+++-+++|.+|-|...|...+.++.-
T Consensus 3 IQF~~Gi~E~~vp~VrLtRsrdg~~g~a~f~F~~p~~l~~~ 43 (111)
T PLN00039 3 IQFIKGTDETTVPDVRLTRSRDGTNGTAIFVFDQPSVFDSS 43 (111)
T ss_pred EEEecCCCCCcCCceEEEEccCCCccEEEEEECCchhhccc
Confidence 6799998875 689999999999999999999999987763
No 162
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=54.30 E-value=95 Score=24.10 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=40.7
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg 124 (227)
++..+|+- +|..=...||.+.|+.|. +|++-.-. -..|||-+...+.++.|+..+.
T Consensus 8 RdHVFhlt---FPkeWK~~DI~qlFspfG----~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT---FPKEWKTSDIYQLFSPFG----QIYVSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE-----TT--HHHHHHHCCCCC----CEEEEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe---CchHhhhhhHHHHhccCC----cEEEEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 56666443 999999999999999874 66665431 3489999999999999999774
No 163
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=51.98 E-value=1.8 Score=34.42 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=56.6
Q ss_pred EEEeC---CCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh--CccceEEEEEEccccc
Q 027131 65 GKLLG---ISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI--GRKGRLYRLERAEQSE 139 (227)
Q Consensus 65 v~lrg---LP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l--g~~gRyv~i~~~~~~~ 139 (227)
+++.+ ++++..++++.+-..- ..++.+..= ..+-.+++|+|++|++++++.- -..+.++.+.+.....
T Consensus 21 g~~l~~~~~~~~~l~~~l~~~W~~----~~~~~i~~l---~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~ 93 (153)
T PF14111_consen 21 GRVLSPKPISLSALEQELAKIWKL----KGGVKIRDL---GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDF 93 (153)
T ss_pred EEECCCCCCCHHHHHHHHHHHhCC----CCcEEEEEe---CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccc
Confidence 66644 4455666666554421 235555432 1367899999999999998822 1333555555443211
Q ss_pred cccccCC--CCcEEEEeccCCCCCHHHHHHccC
Q 027131 140 WDIVMPY--NGKTVLLQNVPRIAVAEDVERFLS 170 (227)
Q Consensus 140 ~~~~~~~--~g~~V~LrgLPf~~tkeEI~~FFs 170 (227)
-...... -.-=|+|.|||..+-.+++..-..
T Consensus 94 ~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~ 126 (153)
T PF14111_consen 94 NPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIG 126 (153)
T ss_pred cccccceeccchhhhhccCCHHHhhhHHHHHHH
Confidence 0000011 111299999999998888765543
No 164
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=51.43 E-value=52 Score=25.26 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHhcCCCCCCC-CCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 69 GISRQTLKSDIINLLEGCNLTP-DDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 69 gLP~s~~K~DI~~FF~g~~I~~-d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
.+.+...++.|.+.| +|.. .++.+.|..+ -+-+|.+.|.+|+..|+...
T Consensus 24 d~~~~~L~~kI~~~f---~l~~~~~~~l~Y~De---dgd~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 24 DLNMDGLREKVEELF---SLSPDADLSLTYTDE---DGDVVTLVDDNDLTDAIQYF 73 (91)
T ss_pred CCCHHHHHHHHHHHh---CCCCCCcEEEEEECC---CCCEEEEccHHHHHHHHHHH
Confidence 578889999999999 4554 8888888764 44689999999999999964
No 165
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.90 E-value=14 Score=29.51 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=35.8
Q ss_pred CCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeC-CHHHHHHHHHHhC
Q 027131 74 TLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFP-SFSAYDNAFRLIG 124 (227)
Q Consensus 74 ~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~-S~~d~~~AL~~lg 124 (227)
++-+++++.|+++ .+..|+.+|++.|-.+-|.|+|. |-.-+..|+++++
T Consensus 29 ~~~~~l~~~l~~f--~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 29 MSNEELLDKLAEF--NPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp --SHHHHHHHHH-----SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc--CCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 3457888888884 45679999999999999999996 5678999999653
No 166
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=49.37 E-value=39 Score=33.47 Aligned_cols=54 Identities=13% Similarity=0.314 Sum_probs=42.8
Q ss_pred EEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc--ceEEEEeCCHHHHHHHHH
Q 027131 66 KLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP--FAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 66 ~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~--~eAfV~F~S~~d~~~AL~ 121 (227)
-+..+|-.++-.|+++|..-+.=.-.+|+++- +|.| --+++.|++.+|++.=..
T Consensus 78 cilaVP~~mt~~Dll~F~~~~~~~I~~irivR--d~~pnrymvLIkFr~q~da~~Fy~ 133 (493)
T KOG0804|consen 78 CILAVPAYMTSHDLLRFCASFIKQISDIRIVR--DGMPNRYMVLIKFRDQADADTFYE 133 (493)
T ss_pred EEEeccccccHHHHHHHHHHHhhhhheeEEee--cCCCceEEEEEEeccchhHHHHHH
Confidence 45568999999999999985544568888887 5554 479999999999777666
No 167
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=49.02 E-value=16 Score=29.18 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHH
Q 027131 80 INLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSA 115 (227)
Q Consensus 80 ~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d 115 (227)
++||+|.+=...+|+++-+++|.+|-|...|+..+.
T Consensus 4 IQF~~Gi~E~~p~VrLtRsrdg~~g~a~f~F~~~~~ 39 (104)
T PRK13611 4 IEFSPGIPEVPTQVRLLKSKTGKRGSAIFRFEDLKS 39 (104)
T ss_pred EEEecCCCCCCCceEEEEccCCCccEEEEEEcCCcc
Confidence 689999987778999999999999999999999765
No 168
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=48.94 E-value=13 Score=30.13 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=35.7
Q ss_pred HHHhcCCCCCC-CCCeEEEecCCCCcceEEEEeCCHHHHHH
Q 027131 79 IINLLEGCNLT-PDDLKVNYTRNYMPFAMMMQFPSFSAYDN 118 (227)
Q Consensus 79 I~~FF~g~~I~-~d~I~~~ydr~g~~~eAfV~F~S~~d~~~ 118 (227)
.++||.|.+=. .-+|+++-+++|.+|-|...|...+.+++
T Consensus 5 ~IQF~~Gi~E~~ip~VrLtRsrdg~~g~a~f~F~~p~al~~ 45 (113)
T PRK13612 5 AIQFSRGVDEPVVPDIRLTRSRDGRTGQATFYFEQPQALAP 45 (113)
T ss_pred eEEEecCCCCCcCCceEEEEccCCCeeEEEEEECCccccCc
Confidence 36899999876 58999999999999999999999998776
No 169
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=48.22 E-value=29 Score=27.45 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=53.2
Q ss_pred CCCCeEEEecCCCC---cceEEEEeCCHHHHHHHHHHhCccceEEEEEEc-ccccccccc---CCCCcEEEE---eccCC
Q 027131 89 TPDDLKVNYTRNYM---PFAMMMQFPSFSAYDNAFRLIGRKGRLYRLERA-EQSEWDIVM---PYNGKTVLL---QNVPR 158 (227)
Q Consensus 89 ~~d~I~~~ydr~g~---~~eAfV~F~S~~d~~~AL~~lg~~gRyv~i~~~-~~~~~~~~~---~~~g~~V~L---rgLPf 158 (227)
...++++-|.++.+ |.-++|+++.-++-++|-.++|. +..+..+. ++-.|.-.. --+| .|+. +|||-
T Consensus 8 ~ikgv~lsyrR~k~~q~P~~~liKi~gv~s~~eA~~y~gk--~v~yk~~~~G~Vi~G~V~R~HGnsG-aVrarF~~~LP~ 84 (100)
T COG2451 8 RIKGVVLSYRRSKRTQHPNVSLIKIEGVDSPEEAQFYLGK--RVCYKYRSSGRVIKGKVVRTHGNSG-AVRARFERNLPG 84 (100)
T ss_pred EEeeEEEEEEecccccCCceEEEEEecCCCHHHHHhhhcc--EEEEEeCCCCcEEEEEEEEecCCcc-eEEEEecCCCCc
Confidence 44688999988655 67999999999999999999998 65555554 222232111 1223 5554 58888
Q ss_pred CCCHHHHHHccCCC
Q 027131 159 IAVAEDVERFLSGC 172 (227)
Q Consensus 159 ~~tkeEI~~FFsG~ 172 (227)
++.-..+.=+.++-
T Consensus 85 qa~G~~v~v~ly~~ 98 (100)
T COG2451 85 QALGTSVEVKLYPS 98 (100)
T ss_pred hhcCcEEEEEEccC
Confidence 87766555444443
No 170
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.03 E-value=24 Score=32.24 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=54.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCc
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRG 214 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~r 214 (227)
.++++|+-||-=.++..=...=|-+|. +--+|.+++|+..++--|=|+|.|.-.|||..|+..-|.-
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFG-DI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes 75 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFG-DIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES 75 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcccccc-chhhcccccchhcccccceeEEEeeccchhHHHhhcCchh
Confidence 466899999988888888888887775 3346888888777777789999999999999999876654
No 171
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=48.03 E-value=63 Score=23.53 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=44.2
Q ss_pred CCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 159 IAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 159 ~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
+.+-+||.+=+..|.. ..++.|.. | =+|.|.+-+||++-+...+++...+..+-|
T Consensus 11 ~~~v~d~K~~Lr~y~~----~~I~~d~t-G-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW----DRIRDDRT-G-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc----ceEEecCC-E-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999943 44556666 4 899999999999999999999888766543
No 172
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=46.94 E-value=95 Score=22.07 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=39.8
Q ss_pred EEEe-CCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC
Q 027131 65 GKLL-GISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 65 v~lr-gLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg 124 (227)
+.+. +++|+-...-|.+-|. +..+.+.+-|.. ..|+ +|.+.|.+|+..|++...
T Consensus 15 ~~~~~~~s~~dL~~~i~~~~~---~~~~~~~l~Y~D--edgd-~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 15 LSVPRDISFEDLRSKVAKRFG---LDNQSFTLKYQD--EDGD-LVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEECCCCCHHHHHHHHHHHhC---CCCCCeEEEEEC--CCCC-EEEecCHHHHHHHHHHHH
Confidence 3443 6777777778888885 344788888874 2234 999999999999999664
No 173
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=45.45 E-value=37 Score=34.03 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=45.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCC-CCc-ceEEEEeCCHHHHHHHHH
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRN-YMP-FAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~-g~~-~eAfV~F~S~~d~~~AL~ 121 (227)
|.|=|||.-.+.+|+..+|+++==...=+-|..|.+ +.| |.+=|.|.+.++|.+|+.
T Consensus 373 VFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 373 VFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred EEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 578899999999999999997653444445566643 335 799999999999999987
No 174
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=43.15 E-value=81 Score=24.31 Aligned_cols=63 Identities=10% Similarity=0.201 Sum_probs=35.9
Q ss_pred EEEEeCCHHHHHHHHHHhCc----cce--EEEEEEccccc---cccccCCCCcEEEEeccCCCCCHHHHHHc
Q 027131 106 MMMQFPSFSAYDNAFRLIGR----KGR--LYRLERAEQSE---WDIVMPYNGKTVLLQNVPRIAVAEDVERF 168 (227)
Q Consensus 106 AfV~F~S~~d~~~AL~~lg~----~gR--yv~i~~~~~~~---~~~~~~~~g~~V~LrgLPf~~tkeEI~~F 168 (227)
|+|.|..++-+++-++.-.+ .+. -+++..+.... .......+.++|+|-|||=.-..|++.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheee
Confidence 78999999987776661111 011 12222221111 00111346789999999997788877754
No 175
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=42.99 E-value=11 Score=30.25 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=26.9
Q ss_pred HHhcCCCCCCCC-CeEEEecCCCCcceEEEEeCCHHHHHHHH
Q 027131 80 INLLEGCNLTPD-DLKVNYTRNYMPFAMMMQFPSFSAYDNAF 120 (227)
Q Consensus 80 ~~FF~g~~I~~d-~I~~~ydr~g~~~eAfV~F~S~~d~~~AL 120 (227)
++||.|.+=... +|+++-+++|..|-|...|+..+.+++--
T Consensus 1 IQF~~Gi~E~~~pdVrLtRsrdg~~g~a~f~F~~p~al~~~~ 42 (108)
T PF03912_consen 1 IQFIKGIDEEVVPDVRLTRSRDGGTGTATFYFENPKALEKFS 42 (108)
T ss_dssp EESSSS-------EEEEEE-TTS-SEEEEEEEES-GGGTSS-
T ss_pred CccccCCCCccCCCeEEEEccCCCceEEEEEECCCccccccc
Confidence 479999887666 99999999999999999999998755444
No 176
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=42.79 E-value=44 Score=32.45 Aligned_cols=57 Identities=11% Similarity=0.061 Sum_probs=41.4
Q ss_pred EEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh
Q 027131 66 KLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 66 ~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l 123 (227)
.+..|---++.+|+.--|+.+.-. .+--++-|+ .|.. -+|||+|++.++.++|.=.|
T Consensus 243 FVCKLNPVTtDeDLeiIFSrFG~i-~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKM 301 (479)
T KOG0415|consen 243 FVCKLNPVTTDEDLEIIFSRFGKI-VSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKM 301 (479)
T ss_pred EEEecCCcccccchhhHHhhcccc-eeeeEEecccccchhheeeeeecchhhHHHHHhhh
Confidence 355566667888999999888742 333344555 5554 38999999999999998755
No 177
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=42.39 E-value=47 Score=26.76 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=27.5
Q ss_pred HccCCCccc-CCceEEEeecCCCCcceeEEEEcCCHH
Q 027131 167 RFLSGCEYE-ASSISFMLRQSLPDSIKWATVRFPSQT 202 (227)
Q Consensus 167 ~FFsG~~i~-p~~I~l~~d~~~g~ptGeA~V~F~S~e 202 (227)
+||.|++=. -.+|.|....+| .+|.|+..|..+.
T Consensus 2 QF~~Gi~E~~ip~VrLtRsrdg--~~g~a~f~F~~p~ 36 (109)
T TIGR03047 2 QFFRGIDEEVIPDVRLTRSRDG--GTGTALFRFENPK 36 (109)
T ss_pred ccccCCCCCcCCceEEEEccCC--CceEEEEEECCch
Confidence 699999644 568999887774 5799999999983
No 178
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=42.39 E-value=14 Score=33.83 Aligned_cols=70 Identities=11% Similarity=-0.038 Sum_probs=47.0
Q ss_pred EEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHH--hCccceEEEEEEc
Q 027131 66 KLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRL--IGRKGRLYRLERA 135 (227)
Q Consensus 66 ~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~--lg~~gRyv~i~~~ 135 (227)
.+.||+++++++||..+|..|...-..=..++...+.. +-|+|.|.+..+...|+.. ...-+|...+++-
T Consensus 189 ~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 189 FVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEED 261 (285)
T ss_pred eecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccC
Confidence 37899999999999988888764322222223335554 5799999999999999983 2223354555433
No 179
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=42.17 E-value=45 Score=28.84 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=37.3
Q ss_pred CCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc---CcccCC
Q 027131 160 AVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN---RGFCLN 218 (227)
Q Consensus 160 ~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n---~rf~gn 218 (227)
..+++++++|.-++ +-+++.+=.+.+| ..|.|.+.++|.+|..... .-|+|+
T Consensus 7 ~~~~~l~~l~~~~~---~~~~~~~L~sFrR----i~v~f~~~~~A~~~r~~l~~~~~~~~g~ 61 (184)
T PF04847_consen 7 DNLAELEELFSTYD---PPVQFSPLKSFRR----IRVVFESPESAQRARQLLHWDGTSFNGK 61 (184)
T ss_dssp --HHHHHHHHHTT----SS-EEEEETTTTE----EEEE-SSTTHHHHHHHTST--TSEETTE
T ss_pred hhHHHHHHHHHhcC---CceEEEEcCCCCE----EEEEeCCHHHHHHHHHHhcccccccCCC
Confidence 35688999999885 3467777666555 9999999999999999977 345665
No 180
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.54 E-value=25 Score=25.24 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.9
Q ss_pred eEEEEcCCHHHHHHHHHHhcC
Q 027131 193 WATVRFPSQTQAMDAFIRKNR 213 (227)
Q Consensus 193 eA~V~F~S~e~A~~Al~~~n~ 213 (227)
+.++-|.|..+||+|....+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~ 23 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKK 23 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHH
Confidence 578999999999999986543
No 181
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=41.37 E-value=19 Score=33.34 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=38.1
Q ss_pred CCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhCccceEE--EEEEccccccc
Q 027131 73 QTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIGRKGRLY--RLERAEQSEWD 141 (227)
Q Consensus 73 s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg~~gRyv--~i~~~~~~~~~ 141 (227)
.++.+=.-.=|..+. +-.+-++.-|. .|.+ |..||-|.+..||-.|++-| .|+|| ++.+.-.++|.
T Consensus 201 evnd~vl~raf~Kfp-sf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem--~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 201 EVNDDVLARAFKKFP-SFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM--NGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred cccHHHHHHHHHhcc-chhhccccccccccccccceeeeecCHHHHHHHHHhh--cccccccchhHhhhhhHH
Confidence 355444444443332 22333444444 5554 68999999999999999966 23565 33344344554
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=41.01 E-value=46 Score=28.32 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=32.4
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCce--EEEe---e-cCC-CCcceeEEEEcCCHHHHHHHHHH
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSI--SFML---R-QSL-PDSIKWATVRFPSQTQAMDAFIR 210 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I--~l~~---d-~~~-g~ptGeA~V~F~S~e~A~~Al~~ 210 (227)
+.-|-||.||.+-|++|...=.+.. .++.+ ..+. + ... ..-.-.|+|.|.+.+++. .+..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~--l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~-~F~~ 73 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPW--LPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLL-EFRD 73 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS----SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHH-HHHH
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhh--cccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHH-HHHH
Confidence 3348899999999999977755552 23332 1221 1 000 112356999999998844 4443
No 183
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.59 E-value=46 Score=30.42 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=50.8
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC--CCCcceEEEEeCCHHHHHHHHHHhC---ccceEEEE
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR--NYMPFAMMMQFPSFSAYDNAFRLIG---RKGRLYRL 132 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr--~g~~~eAfV~F~S~~d~~~AL~~lg---~~gRyv~i 132 (227)
+..+.-+++-||-=.++..=+.+=|=-+. .-.+|.+-.|. ..--+=+||+|.-.+|+-.|+..|. ..||-++|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFG-DI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFG-DIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhcccccc-chhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 46666678889988888776666553332 12344444444 3335689999999999999999773 56787765
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=39.50 E-value=99 Score=24.57 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=36.4
Q ss_pred EeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcc--eEEEEeCCHHHHHHHHH-HhCc
Q 027131 67 LLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPF--AMMMQFPSFSAYDNAFR-LIGR 125 (227)
Q Consensus 67 lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~--eAfV~F~S~~d~~~AL~-~lg~ 125 (227)
|-..||...-.|+..|.+.+.=....+++ =|++.|. -++++|.+.++++.=.. +.|+
T Consensus 18 l~vp~~~~~~d~l~~f~~~~~~~i~~~ri--ird~~pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 18 LAVPPYMTPSDFLLFFGAPFREDIEHIRI--IRDGTPNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred EEeCcccccHHHHHHhhhcccccEEEEEE--eeCCCCceEEEEEEECCHHHHHHHHHHhCCC
Confidence 35677777777776665443322234444 3466664 69999999999777666 5564
No 185
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=38.67 E-value=74 Score=24.66 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=46.2
Q ss_pred CCeEEEecCCCC---cceEEEEeCCHHHHHHHHHHhCccceEEEEEEcccccccccc-CC-CCcEEEE---eccCCCC
Q 027131 91 DDLKVNYTRNYM---PFAMMMQFPSFSAYDNAFRLIGRKGRLYRLERAEQSEWDIVM-PY-NGKTVLL---QNVPRIA 160 (227)
Q Consensus 91 d~I~~~ydr~g~---~~eAfV~F~S~~d~~~AL~~lg~~gRyv~i~~~~~~~~~~~~-~~-~g~~V~L---rgLPf~~ 160 (227)
.+|.+-|.|+.+ +.-|+|..+--.+-+.|--++|. |...+++..+.-|--.. +. +.++|+- +|||-++
T Consensus 4 kgv~~gykRg~~nQ~~~~aLlkiegv~~~~~a~fylGK--rv~yvyk~grviwGKItR~HGnsGvVrAkF~~nLP~~a 79 (87)
T PRK04337 4 KGVILSYRRGKNTQYNRQVIIKPLGVDDREEAAKLIGR--KVIWKDPTGNKYVGKIVRVHGNRGEVRARFKPGLPGQA 79 (87)
T ss_pred eEEEEEeccccCccCCceEEEEEcCcCCHHHHHhhcCc--eEEEEeCCCCEEEEEEEeeeCCCceEEEEECCCCChHH
Confidence 578888988555 56899999888888889999999 65556665554554222 11 2235554 4888654
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=37.81 E-value=47 Score=28.26 Aligned_cols=56 Identities=5% Similarity=0.042 Sum_probs=33.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCC----CeEEEecC-CCC---cceEEEEeCCHHHHHHHHH
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPD----DLKVNYTR-NYM---PFAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d----~I~~~ydr-~g~---~~eAfV~F~S~~d~~~AL~ 121 (227)
|-||.||.+.++++...=.+.+ +.+. -++.-+++ ... .+.|+|.|.+.+++..=..
T Consensus 10 vVIR~LPP~LteeeF~~~i~~~-l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~ 73 (176)
T PF03467_consen 10 VVIRRLPPNLTEEEFWEQISPW-LPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRD 73 (176)
T ss_dssp EEEEEE-TTS-HHHHCCCCSS---SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHhhhh-cccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHH
Confidence 6899999999999877744321 2222 23333555 333 3589999999999555444
No 187
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=37.32 E-value=49 Score=33.86 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=53.6
Q ss_pred cEEEEeccCCCC-CHH-----HHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHh-cCcccCCcee
Q 027131 149 KTVLLQNVPRIA-VAE-----DVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK-NRGFCLNNQV 221 (227)
Q Consensus 149 ~~V~LrgLPf~~-tke-----EI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~-n~rf~gn~~v 221 (227)
.||-+-|.|-=- -+- =|-.-|+-+. ...++.++.+..|| ..|-+++.+.|..+|..|+... |.++..|-..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g-k~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAG-KIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhc-cccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 589999999632 222 2334466664 33456666677765 9999999999999999999765 5577777777
Q ss_pred EEEec
Q 027131 222 SVRVL 226 (227)
Q Consensus 222 ~lrvl 226 (227)
.+|.+
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 66653
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=36.21 E-value=1.9e+02 Score=22.96 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=36.4
Q ss_pred EeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCc-ceeEEEEcCCHHHHHHHHHHhcCccc
Q 027131 153 LQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDS-IKWATVRFPSQTQAMDAFIRKNRGFC 216 (227)
Q Consensus 153 LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~p-tGeA~V~F~S~e~A~~Al~~~n~rf~ 216 (227)
|=..|+-.+..++..|.+.+ ...|..+.=...+.| -=+++++|.+++.|..=...-|++.-
T Consensus 18 l~vp~~~~~~d~l~~f~~~~---~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 18 LAVPPYMTPSDFLLFFGAPF---REDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred EEeCcccccHHHHHHhhhcc---cccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 44455555555665554444 344543331111222 24899999999999998888776643
No 189
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=35.98 E-value=38 Score=27.84 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=31.7
Q ss_pred ccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 174 YEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 174 i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
|+-..-+.+++.+..-|.|.-++-|.++++|.+-..+++++-+.=.+|
T Consensus 97 Ida~~A~yV~gs~~~~pMg~~~~aF~~~~~A~~F~~~~GG~v~~f~ev 144 (149)
T PF05573_consen 97 IDAKKAYYVVGSDVRGPMGPDLIAFASKEDAEAFAKEHGGKVLTFDEV 144 (149)
T ss_dssp EEGGGSEEEEESSSS-TTS--EEEES-HHHHHHHHHHTEEEEEEGGG-
T ss_pred EEcceEEEEECCCcCCCCCCcccccCCHHHHHHHHHHcCCEEeeHHHC
Confidence 334456666665555588899999999999999999998766544444
No 190
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=35.50 E-value=54 Score=32.42 Aligned_cols=130 Identities=13% Similarity=0.064 Sum_probs=80.7
Q ss_pred HHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHH------HhC---ccceEEEEEEccccc--ccccc---
Q 027131 79 IINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFR------LIG---RKGRLYRLERAEQSE--WDIVM--- 144 (227)
Q Consensus 79 I~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~------~lg---~~gRyv~i~~~~~~~--~~~~~--- 144 (227)
|.-+|+|-+|-.|. |++..-.+..++||-.+-...+++--. .++ ++.+..+|.+-+++. ..+..
T Consensus 148 VEyyFSDenL~~d~--fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~ 225 (484)
T KOG1855|consen 148 VEYYFSDENLLKDA--FLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFD 225 (484)
T ss_pred hheeeccccccchH--HHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCcc
Confidence 44589999996654 333334455677777777776665332 111 222333443332221 01111
Q ss_pred --CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEe------ecCCCCcc--------eeEEEEcCCHHHHHHHH
Q 027131 145 --PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFML------RQSLPDSI--------KWATVRFPSQTQAMDAF 208 (227)
Q Consensus 145 --~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~------d~~~g~pt--------GeA~V~F~S~e~A~~Al 208 (227)
....++|..-|||-+-..|-|.+.|.-+..+ ..|.|+- +..+ .|. --|+|.|..-+.|.+|-
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~I-ksIRIckPgaip~d~r~-~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSI-KSIRICKPGAIPEDVRG-FPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccce-eeeeecCCCCCCccccc-CCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 1235789999999999999999999988644 3455543 2221 222 35999999999999998
Q ss_pred HHhc
Q 027131 209 IRKN 212 (227)
Q Consensus 209 ~~~n 212 (227)
.++|
T Consensus 304 e~~~ 307 (484)
T KOG1855|consen 304 ELLN 307 (484)
T ss_pred Hhhc
Confidence 8874
No 191
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=35.24 E-value=47 Score=26.60 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=29.3
Q ss_pred HHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHH
Q 027131 166 ERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQT 202 (227)
Q Consensus 166 ~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e 202 (227)
.+||.|++=.+.+|.|.....| .+|.|+..|....
T Consensus 4 IQF~~Gi~E~~p~VrLtRsrdg--~~g~a~f~F~~~~ 38 (104)
T PRK13611 4 IEFSPGIPEVPTQVRLLKSKTG--KRGSAIFRFEDLK 38 (104)
T ss_pred EEEecCCCCCCCceEEEEccCC--CccEEEEEEcCCc
Confidence 4799999877789999887774 6899999999854
No 192
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.67 E-value=1.3e+02 Score=21.44 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=44.8
Q ss_pred eEEEEeCCHHHHHHHHHHhCccceEEEEEEccccccccccCCC--CcEEEEeccCCCCCHHHHHHccCCCcccCCceE
Q 027131 105 AMMMQFPSFSAYDNAFRLIGRKGRLYRLERAEQSEWDIVMPYN--GKTVLLQNVPRIAVAEDVERFLSGCEYEASSIS 180 (227)
Q Consensus 105 eAfV~F~S~~d~~~AL~~lg~~gRyv~i~~~~~~~~~~~~~~~--g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~ 180 (227)
+.+|.|.|-.++.+|.+.++..|--+++...-+.- .. |-++++.. ...+.|.+++..-+|...+|.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i------~~~CG~al~~~~----~d~~~i~~~l~~~~i~~~~iy 70 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREI------SAGCGLALRFEP----EDLEKIKEILEENGIEYEGIY 70 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhc------cCCCCEEEEECh----hhHHHHHHHHHHCCCCeeEEE
Confidence 57899999999999999776544444554442111 22 33455432 678888889888888877775
No 193
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=32.13 E-value=1.2e+02 Score=23.24 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=39.9
Q ss_pred ccCCCCCHHHHHHccCCCcccC-CceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC
Q 027131 155 NVPRIAVAEDVERFLSGCEYEA-SSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR 213 (227)
Q Consensus 155 gLPf~~tkeEI~~FFsG~~i~p-~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~ 213 (227)
.+.|..-+++|.+.|. +.+ .++.|-|....| -.|.+.|.+|-..|+....+
T Consensus 24 d~~~~~L~~kI~~~f~---l~~~~~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~~~ 75 (91)
T cd06398 24 DLNMDGLREKVEELFS---LSPDADLSLTYTDEDG-----DVVTLVDDNDLTDAIQYFCS 75 (91)
T ss_pred CCCHHHHHHHHHHHhC---CCCCCcEEEEEECCCC-----CEEEEccHHHHHHHHHHHhc
Confidence 5677778899999994 444 678888843335 69999999999999998744
No 194
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=30.89 E-value=26 Score=32.18 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=22.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhCccceEEE
Q 027131 103 PFAMMMQFPSFSAYDNAFRLIGRKGRLYR 131 (227)
Q Consensus 103 ~~eAfV~F~S~~d~~~AL~~lg~~gRyv~ 131 (227)
.|-++|+|.+++++++|+..|.- ||+.
T Consensus 110 ~GNVYV~f~~Ee~ae~a~~~lnn--Rw~~ 136 (260)
T KOG2202|consen 110 VGNVYVKFRSEEDAEAALEDLNN--RWYN 136 (260)
T ss_pred hhhhhhhcccHHHHHHHHHHHcC--cccc
Confidence 47899999999999999998854 6653
No 195
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.60 E-value=1.2e+02 Score=20.57 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeC--CHHHHHHHHHHhCc
Q 027131 77 SDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFP--SFSAYDNAFRLIGR 125 (227)
Q Consensus 77 ~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~--S~~d~~~AL~~lg~ 125 (227)
.+|.++|..+++.-..+......+.......|.+. +.+++.++|+..|.
T Consensus 16 ~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~G~ 66 (72)
T cd04883 16 ADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRAGY 66 (72)
T ss_pred HHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHCCC
Confidence 47899999988887777654332322334556665 55566666665554
No 196
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=28.90 E-value=34 Score=22.82 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.2
Q ss_pred EeccCCCCCHHHHHHccCCC
Q 027131 153 LQNVPRIAVAEDVERFLSGC 172 (227)
Q Consensus 153 LrgLPf~~tkeEI~~FFsG~ 172 (227)
|.|+.|-++|+||.+.-..-
T Consensus 1 L~~~dyPa~k~~Lv~~A~~~ 20 (44)
T PF11387_consen 1 LKGVDYPADKDELVRHARRN 20 (44)
T ss_pred CCCCCCCCCHHHHHHHHHHc
Confidence 57899999999999875443
No 197
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=28.29 E-value=61 Score=23.08 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCcceEEEEeCCHHHHHHHHHHh
Q 027131 69 GISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 69 gLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
+.+|+.....|..-|... ..++.+.|-. +| -+|.+.|.+|+..|+...
T Consensus 21 ~~s~~~L~~~i~~~~~~~---~~~~~l~Y~D~dg----D~V~i~sd~Dl~~a~~~~ 69 (84)
T PF00564_consen 21 DVSFDDLRSKIREKFGLL---DEDFQLKYKDEDG----DLVTISSDEDLQEAIEQA 69 (84)
T ss_dssp TSHHHHHHHHHHHHHTTS---TSSEEEEEEETTS----SEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCC---CccEEEEeeCCCC----CEEEeCCHHHHHHHHHHH
Confidence 677777788888888654 7899999965 44 689999999999999966
No 198
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=28.06 E-value=82 Score=25.57 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=28.0
Q ss_pred HHccCCCccc-CCceEEEeecCCCCcceeEEEEcCCHH
Q 027131 166 ERFLSGCEYE-ASSISFMLRQSLPDSIKWATVRFPSQT 202 (227)
Q Consensus 166 ~~FFsG~~i~-p~~I~l~~d~~~g~ptGeA~V~F~S~e 202 (227)
.+||.|++=. -.+|.|....+| .+|.|+..|..+.
T Consensus 4 IQF~~Gi~E~~ip~VrLtRsrdg--~~g~a~f~F~~p~ 39 (113)
T CHL00128 4 IQFIKGIDEEVIPDVRLTRSRDG--STGTATFRFKNPN 39 (113)
T ss_pred EEEecCCCCCcCCceEEEEccCC--CceEEEEEECCch
Confidence 4799999644 568999887774 5799999999984
No 199
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=27.64 E-value=2.2e+02 Score=19.95 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=39.4
Q ss_pred eCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCcceEEEEeCCHHHHHHHHHHhC
Q 027131 68 LGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMPFAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 68 rgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~~eAfV~F~S~~d~~~AL~~lg 124 (227)
++..|.-.+.-|.+-|.... ..+.+.|-. +| .+|...|.+|+..|++...
T Consensus 19 ~~~s~~~L~~~i~~~~~~~~---~~~~l~y~D~e~----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 19 RSISFEDLRSKIAEKFGLDA---VSFKLKYPDEDG----DLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred CCCCHHHHHHHHHHHhCCCC---CcEEEEeeCCCC----CEEEeCCHHHHHHHHHHHh
Confidence 47788888888888886543 677887765 33 7899999999999999663
No 200
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=27.22 E-value=1.5e+02 Score=26.70 Aligned_cols=60 Identities=22% Similarity=0.368 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHhcCCCC---------CCCCC-eEEEecCCCCcceEEEEeC-----CHHHHHHHHHHhCccceEEEE
Q 027131 71 SRQTLKSDIINLLEGCN---------LTPDD-LKVNYTRNYMPFAMMMQFP-----SFSAYDNAFRLIGRKGRLYRL 132 (227)
Q Consensus 71 P~s~~K~DI~~FF~g~~---------I~~d~-I~~~ydr~g~~~eAfV~F~-----S~~d~~~AL~~lg~~gRyv~i 132 (227)
.-.++++.+++-+.|=. -++++ |.+-+...|.++ ++.|+ +.++...||+.|..++||.++
T Consensus 77 g~~v~~~~fl~vL~G~~~~~~~kvl~s~~~D~vfiy~~~HG~~~--~l~~~~~~~l~~~~L~~~L~~m~~~~~y~~l 151 (256)
T PF01650_consen 77 GEDVTPENFLNVLTGDKSVPSGKVLNSTENDNVFIYFTGHGGPG--FLKFPDGEELTADDLADALDKMHEKKRYKKL 151 (256)
T ss_pred ccccCHHHHHHHhcCCCCCCccccccCCCCCeEEEEEeccCCCC--cccCCCcccccHHHHHHHHHHHHhhCCcceE
Confidence 34778888887776433 24544 444455566666 88888 788999999988766676553
No 201
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.16 E-value=1.7e+02 Score=19.78 Aligned_cols=48 Identities=8% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 76 KSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 76 K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
-.+|.+.|+..++.-..+.....+++..+..-+.++..++.+++.+.+
T Consensus 15 L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 15 IAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 358999999999988777654433333455677787666666666644
No 202
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=25.67 E-value=87 Score=32.14 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=47.5
Q ss_pred CCeEEEEEeCCCCC------CCHHHHHHhcCCCCCCCCCeEEEecC-CCCcceEEEEeCCHHHHHHHHH-HhCc
Q 027131 60 KGVFYGKLLGISRQ------TLKSDIINLLEGCNLTPDDLKVNYTR-NYMPFAMMMQFPSFSAYDNAFR-LIGR 125 (227)
Q Consensus 60 ~~~~yv~lrgLP~s------~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~~eAfV~F~S~~d~~~AL~-~lg~ 125 (227)
.-.-||-+-|.|.= .+|.=|...|+.+. ...+..+-.+. +|.-|-+|+++.|..+++.|.+ +.|+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g-k~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAG-KIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhc-cccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence 44557899998863 34555666787776 55666666677 5545899999999999999999 3353
No 203
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=25.33 E-value=79 Score=24.08 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 69 GISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 69 gLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
++||+.+.+=|.+ .++|..+.|++-|-+. +++-+|.. |++|.+.|++..
T Consensus 20 ~~~y~~L~~ki~~---kLkl~~e~i~LsYkde--~s~~~v~l-~d~dle~aws~~ 68 (80)
T cd06406 20 GLSYATLLQKISS---KLELPAEHITLSYKSE--ASGEDVIL-SDTNMEDVWSQA 68 (80)
T ss_pred CCCHHHHHHHHHH---HhCCCchhcEEEeccC--CCCCccCc-ChHHHHHHHHhh
Confidence 6888877777765 5677789999999542 33445777 999999999966
No 204
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=24.14 E-value=94 Score=25.24 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=28.5
Q ss_pred HHccCCCccc-CCceEEEeecCCCCcceeEEEEcCCHHH
Q 027131 166 ERFLSGCEYE-ASSISFMLRQSLPDSIKWATVRFPSQTQ 203 (227)
Q Consensus 166 ~~FFsG~~i~-p~~I~l~~d~~~g~ptGeA~V~F~S~e~ 203 (227)
.+||.|++=. -.+|.|....+| .+|.|+..|..+..
T Consensus 10 IQF~~Gi~E~~vp~VrLtRsrdG--~tG~A~f~F~~p~~ 46 (113)
T PRK13610 10 IQFVKGENEKDQPEIRLFRNLDG--KKGKAVYKFYKPKT 46 (113)
T ss_pred EEEecCCCCCcCCceEEEEccCC--CccEEEEEECCchh
Confidence 4799999644 568999887774 58999999999854
No 205
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.48 E-value=39 Score=21.12 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=8.9
Q ss_pred CCCCHHHHHHccC
Q 027131 158 RIAVAEDVERFLS 170 (227)
Q Consensus 158 f~~tkeEI~~FFs 170 (227)
-+.|+|||..|+.
T Consensus 15 ~Gls~eeir~FL~ 27 (30)
T PF08671_consen 15 SGLSKEEIREFLE 27 (30)
T ss_dssp TT--HHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 3679999999974
No 206
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.17 E-value=2.4e+02 Score=18.76 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=39.4
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCC-CCc-ceEEEEeCCHHHHHHHHHHhC
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRN-YMP-FAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~-g~~-~eAfV~F~S~~d~~~AL~~lg 124 (227)
|+++..--..-.-.+|.+.|.++++.-..+......+ +.. ....+.-.+.++.+.+++.+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHH
Confidence 5566555555566799999999998887776543322 222 123344567888888888664
No 207
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.16 E-value=1.2e+02 Score=29.49 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=50.7
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
++.+=-|-.-.|.||.+-.|+-|..+ .+-.++.|...|...-.|||.|.+++..++|+=+-.
T Consensus 241 VLFVCKLNPVTtDeDLeiIFSrFG~i-~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd 302 (479)
T KOG0415|consen 241 VLFVCKLNPVTTDEDLEIIFSRFGKI-VSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD 302 (479)
T ss_pred eEEEEecCCcccccchhhHHhhcccc-eeeeEEecccccchhheeeeeecchhhHHHHHhhhc
Confidence 56677777888999999999999755 456677777777888899999999999999986543
No 208
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=22.67 E-value=1.4e+02 Score=21.12 Aligned_cols=31 Identities=16% Similarity=0.000 Sum_probs=21.8
Q ss_pred EEEeecCCCCcceeEEEEcCCHHHHHHHHHHh
Q 027131 180 SFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK 211 (227)
Q Consensus 180 ~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~ 211 (227)
..-++.- |.+-+.-...|.|.++|.+++.++
T Consensus 32 ~~~wGRi-G~~Gq~~~~~~~s~~~A~~~~~k~ 62 (74)
T cd07996 32 VRRWGRI-GTKGQSRTKTFDSEEEALKAAEKL 62 (74)
T ss_pred EEEECCC-CCCCceEEEECCCHHHHHHHHHHH
Confidence 3334433 344466788899999999998765
No 209
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=21.44 E-value=1.2e+02 Score=28.19 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=44.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF 215 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf 215 (227)
+|++++.-+|+|..+.+|. +|+..--.++..=.|-|++.+|.-+| .....++..++...=+||
T Consensus 20 ~G~VL~fP~l~F~l~~~E~-~fL~p~~~d~k~KNIs~~p~~~~l~G-----~~~~~~~~~~l~~m~~ry 82 (281)
T PF11004_consen 20 QGKVLYFPQLRFPLSPEER-AFLDPAIVDPKRKNISYRPNTGSLRG-----AAGDAEDQAQLRAMMRRY 82 (281)
T ss_pred CCCEEEeCCCCCCCChhHH-hhcChhhhCCCCCceeecCCCCceec-----ccCCHHHHHHHHHHHHHH
Confidence 5889999999999999999 79999877776666777777654444 232344455544443333
No 210
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=21.32 E-value=1.1e+02 Score=24.66 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=28.0
Q ss_pred HHccCCCccc-CCceEEEeecCCCCcceeEEEEcCCHH
Q 027131 166 ERFLSGCEYE-ASSISFMLRQSLPDSIKWATVRFPSQT 202 (227)
Q Consensus 166 ~~FFsG~~i~-p~~I~l~~d~~~g~ptGeA~V~F~S~e 202 (227)
.+||.|++=. -.+|.|.....| .+|.|+..|..+.
T Consensus 3 IQF~~Gi~E~~vp~VrLtRsrdg--~~g~a~f~F~~p~ 38 (111)
T PLN00039 3 IQFIKGTDETTVPDVRLTRSRDG--TNGTAIFVFDQPS 38 (111)
T ss_pred EEEecCCCCCcCCceEEEEccCC--CccEEEEEECCch
Confidence 4799999644 568999887774 6899999999984
No 211
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=20.59 E-value=2.5e+02 Score=20.76 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=25.2
Q ss_pred ccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHH
Q 027131 168 FLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAM 205 (227)
Q Consensus 168 FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~ 205 (227)
-|+|-+|.|..=.+.+.-+ | ..+.|.|..-.-
T Consensus 7 sFcG~~I~PGtG~m~Vr~D-g-----~v~~FcssKc~k 38 (66)
T COG2075 7 SFCGKKIEPGTGIMYVRND-G-----KVLRFCSSKCEK 38 (66)
T ss_pred cCcCCccCCCceEEEEecC-C-----eEEEEechhHHH
Confidence 4899999998888887766 4 789999875544
No 212
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=20.49 E-value=2.7e+02 Score=21.13 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCcceEEEEeCCHHHHHHHHHHhCccceEEEEE
Q 027131 70 ISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMPFAMMMQFPSFSAYDNAFRLIGRKGRLYRLE 133 (227)
Q Consensus 70 LP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~~eAfV~F~S~~d~~~AL~~lg~~gRyv~i~ 133 (227)
..|.-.+++|..-|. |. .|.+-|=+ ++. +|...|..|++.|++..-+.|+.+++.
T Consensus 22 ~~~~~L~~ev~~rf~---l~--~f~lKYlDde~e----~v~lssd~eLeE~~rl~~~~~~~l~~~ 77 (81)
T cd06396 22 TTWASVEAMVKVSFG---LN--DIQIKYVDEENE----EVSVNSQGEYEEALKSAVRQGNLLQMN 77 (81)
T ss_pred CCHHHHHHHHHHHhC---CC--cceeEEEcCCCC----EEEEEchhhHHHHHHHHHhCCCEEEEE
Confidence 456677888888773 33 66666654 544 688999999999999776777776654
No 213
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=20.40 E-value=1.1e+02 Score=24.77 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=28.5
Q ss_pred HHccCCCccc-CCceEEEeecCCCCcceeEEEEcCCHHH
Q 027131 166 ERFLSGCEYE-ASSISFMLRQSLPDSIKWATVRFPSQTQ 203 (227)
Q Consensus 166 ~~FFsG~~i~-p~~I~l~~d~~~g~ptGeA~V~F~S~e~ 203 (227)
.+||.|++=. -.+|.|....+| .+|.|+..|..+..
T Consensus 6 IQF~~Gi~E~~ip~VrLtRsrdg--~~g~a~f~F~~p~a 42 (113)
T PRK13612 6 IQFSRGVDEPVVPDIRLTRSRDG--RTGQATFYFEQPQA 42 (113)
T ss_pred EEEecCCCCCcCCceEEEEccCC--CeeEEEEEECCccc
Confidence 4799999744 368999887774 57999999998843
No 214
>KOG4638 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.36 E-value=1.4e+02 Score=28.89 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=34.7
Q ss_pred CcccccccC--CCccccCCCCCCC-CCCCCCCCCCccCCCCCCeEEEEEeCCCCCCCHHHHHH
Q 027131 22 SLPSLLRQS--PKHFSTETEAPPP-PPPNDASIDLFLQTPTKGVFYGKLLGISRQTLKSDIIN 81 (227)
Q Consensus 22 ~~~~~~~~~--~~~~s~~~~~~~~-~~~~~~~~~~~~~sp~~~~~yv~lrgLP~s~~K~DI~~ 81 (227)
+.+++|+++ +=.=|.++.|.|+ ....+-+++ +.-|+++++++++-++++-|.+.+.=.
T Consensus 32 a~rs~Lqhs~~~~tgss~~~~~Pqp~~ht~l~se--~~~~~s~ev~~~i~s~sk~~ae~a~~~ 92 (371)
T KOG4638|consen 32 ANRSQLQHSGPPGTGSSEAAPTPQPCVHTLLTSE--GSCPSSGEVHIQIISISKECAENAMSR 92 (371)
T ss_pred hhhhhhccCCCCCCCccCCCCCCCCCcccccccc--CCCCcCCceeEEEecccccchhhhhhh
Confidence 345555555 2223344444333 333332222 335689999999999999999887654
No 215
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=20.06 E-value=2.2e+02 Score=19.87 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.7
Q ss_pred CCcceeEEEEcCCHHHHHHHH
Q 027131 188 PDSIKWATVRFPSQTQAMDAF 208 (227)
Q Consensus 188 g~ptGeA~V~F~S~e~A~~Al 208 (227)
..+...++|+|.|.+.|.+-+
T Consensus 36 ~~~~~~viieFPs~~aa~~~~ 56 (65)
T PF07045_consen 36 WDPDRVVIIEFPSMEAAKAWY 56 (65)
T ss_dssp -SSSEEEEEEESSHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHH
Confidence 357789999999998887654
Done!