Query 027131
Match_columns 227
No_of_seqs 98 out of 100
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 99.9 1.4E-21 4.6E-26 153.4 16.0 157 65-225 3-163 (166)
2 1l3k_A Heterogeneous nuclear r 99.9 1.2E-21 4.2E-26 158.6 16.1 159 64-225 15-179 (196)
3 1fxl_A Paraneoplastic encephal 99.9 2.3E-21 7.7E-26 152.3 15.5 155 65-225 5-164 (167)
4 2qfj_A FBP-interacting repress 99.9 6.4E-21 2.2E-25 156.5 15.1 160 64-225 30-201 (216)
5 1b7f_A Protein (SXL-lethal pro 99.9 1.7E-20 5.7E-25 148.1 16.2 155 64-224 5-166 (168)
6 3nmr_A Cugbp ELAV-like family 99.8 2.5E-20 8.4E-25 147.7 15.1 155 64-224 5-172 (175)
7 2cjk_A Nuclear polyadenylated 99.8 3.2E-21 1.1E-25 152.5 9.5 154 65-225 6-162 (167)
8 1fje_B Nucleolin RBD12, protei 99.8 4.9E-20 1.7E-24 147.4 13.2 156 61-225 12-170 (175)
9 2g4b_A Splicing factor U2AF 65 99.8 4.6E-20 1.6E-24 146.5 12.4 154 65-224 7-169 (172)
10 2yh0_A Splicing factor U2AF 65 99.8 1.3E-19 4.3E-24 147.0 15.1 159 65-225 7-190 (198)
11 4f02_A Polyadenylate-binding p 99.8 9.9E-20 3.4E-24 152.5 14.5 154 65-224 18-176 (213)
12 3smz_A Protein raver-1, ribonu 99.8 4.3E-19 1.5E-23 152.9 18.4 158 64-225 97-260 (284)
13 2ghp_A U4/U6 snRNA-associated 99.8 1.8E-19 6.1E-24 155.8 12.5 151 62-225 41-193 (292)
14 2ghp_A U4/U6 snRNA-associated 99.8 3.3E-19 1.1E-23 154.2 13.0 160 64-225 119-287 (292)
15 3smz_A Protein raver-1, ribonu 99.8 3.4E-18 1.2E-22 147.2 15.8 145 64-225 24-171 (284)
16 3sde_A Paraspeckle component 1 99.8 1.3E-17 4.4E-22 143.9 17.7 148 61-225 21-175 (261)
17 1qm9_A Polypyrimidine tract-bi 99.7 1.3E-17 4.5E-22 136.2 12.3 152 64-224 5-192 (198)
18 2adc_A Polypyrimidine tract-bi 99.7 5.2E-17 1.8E-21 137.3 13.2 151 65-224 37-223 (229)
19 3tyt_A Heterogeneous nuclear r 99.7 1.7E-16 5.8E-21 134.0 14.5 155 65-225 7-203 (205)
20 3pgw_A U1-A; protein-RNA compl 99.7 2.6E-15 8.7E-20 129.1 17.5 152 64-224 11-278 (282)
21 2dnn_A RNA-binding protein 12; 99.5 3.8E-14 1.3E-18 109.6 8.2 79 61-141 15-96 (109)
22 2kn4_A Immunoglobulin G-bindin 99.5 2E-13 6.9E-18 108.7 12.5 132 92-225 2-146 (158)
23 1wez_A HnRNP H', FTP-3, hetero 99.5 2.1E-13 7.3E-18 103.2 9.3 75 146-224 13-87 (102)
24 2dnn_A RNA-binding protein 12; 99.5 1.5E-13 5.2E-18 106.2 8.7 74 148-225 16-89 (109)
25 2hgm_A HNRPF protein, heteroge 99.5 3.6E-14 1.2E-18 113.0 5.0 76 147-224 41-116 (126)
26 2dha_A FLJ20171 protein; RRM d 99.4 1.1E-13 3.6E-18 109.5 6.5 75 147-223 22-99 (123)
27 1wg5_A Heterogeneous nuclear r 99.4 2.2E-13 7.7E-18 102.6 7.2 76 147-224 14-89 (104)
28 1wg5_A Heterogeneous nuclear r 99.4 5.7E-13 2E-17 100.3 8.6 80 62-141 15-97 (104)
29 2cpy_A RNA-binding protein 12; 99.4 6.6E-13 2.3E-17 101.5 8.2 78 146-225 13-90 (114)
30 2hgm_A HNRPF protein, heteroge 99.4 1E-13 3.4E-18 110.4 3.7 79 61-139 41-122 (126)
31 2dha_A FLJ20171 protein; RRM d 99.4 3.1E-13 1.1E-17 106.8 6.3 81 60-140 21-107 (123)
32 2db1_A Heterogeneous nuclear r 99.4 1.2E-12 4.2E-17 101.1 9.2 77 147-225 16-94 (118)
33 2lmi_A GRSF-1, G-rich sequence 99.4 4.9E-13 1.7E-17 101.2 6.8 76 147-224 10-87 (107)
34 2dgw_A Probable RNA-binding pr 99.4 2.2E-12 7.6E-17 94.0 9.6 75 147-225 9-83 (91)
35 2hgl_A HNRPF protein, heteroge 99.4 1.6E-12 5.4E-17 104.4 9.4 77 147-225 43-121 (136)
36 2db1_A Heterogeneous nuclear r 99.4 3.1E-12 1.1E-16 98.8 9.4 80 60-139 15-99 (118)
37 1wez_A HnRNP H', FTP-3, hetero 99.4 3.4E-12 1.2E-16 96.6 9.4 75 63-139 16-93 (102)
38 2lmi_A GRSF-1, G-rich sequence 99.3 2.4E-12 8.1E-17 97.4 6.8 80 60-139 9-93 (107)
39 2hgl_A HNRPF protein, heteroge 99.3 6.5E-12 2.2E-16 100.8 9.7 81 59-139 41-126 (136)
40 1wel_A RNA-binding protein 12; 99.3 6.4E-12 2.2E-16 97.1 8.9 77 147-225 24-100 (124)
41 1wel_A RNA-binding protein 12; 99.3 9.1E-12 3.1E-16 96.3 9.7 87 53-139 16-105 (124)
42 2hgn_A Heterogeneous nuclear r 99.3 9.5E-13 3.3E-17 106.1 3.9 74 147-224 45-118 (139)
43 2cpy_A RNA-binding protein 12; 99.3 1.6E-11 5.4E-16 93.8 10.0 79 61-139 14-95 (114)
44 2ek1_A RNA-binding protein 12; 99.3 1.3E-11 4.5E-16 90.1 9.0 76 149-225 16-91 (95)
45 4fxv_A ELAV-like protein 1; RN 99.3 1.3E-11 4.3E-16 92.9 9.0 80 145-225 16-95 (99)
46 2la6_A RNA-binding protein FUS 99.3 3E-11 1E-15 89.4 10.7 80 146-225 11-97 (99)
47 2lxi_A RNA-binding protein 10; 99.3 2.5E-12 8.6E-17 95.1 4.7 76 149-224 2-78 (91)
48 2dgw_A Probable RNA-binding pr 99.3 3.3E-11 1.1E-15 87.7 10.5 75 60-136 8-85 (91)
49 2cqp_A RNA-binding protein 12; 99.3 2.7E-11 9.4E-16 89.1 9.5 77 148-225 15-91 (98)
50 2fc8_A NCL protein; structure 99.2 4E-11 1.4E-15 88.8 9.9 76 146-225 13-88 (102)
51 2dng_A Eukaryotic translation 99.2 2.8E-11 9.6E-16 90.1 9.0 76 147-225 14-89 (103)
52 2cpe_A RNA-binding protein EWS 99.2 3.4E-11 1.2E-15 90.9 8.6 80 146-225 13-99 (113)
53 1x5t_A Splicing factor 3B subu 99.2 4E-11 1.4E-15 87.7 8.6 79 147-225 4-82 (96)
54 3bs9_A Nucleolysin TIA-1 isofo 99.2 4.2E-11 1.4E-15 85.9 8.3 78 147-225 5-82 (87)
55 4f25_A Polyadenylate-binding p 99.2 2E-11 6.7E-16 93.6 6.8 98 65-163 8-112 (115)
56 3s7r_A Heterogeneous nuclear r 99.2 3.6E-11 1.2E-15 86.6 7.7 77 146-224 9-85 (87)
57 3md1_A Nuclear and cytoplasmic 99.2 6.1E-11 2.1E-15 84.3 8.8 75 150-225 3-77 (83)
58 2cqc_A Arginine/serine-rich sp 99.2 5.4E-11 1.8E-15 86.6 7.8 77 148-225 15-91 (95)
59 3p5t_L Cleavage and polyadenyl 99.2 4.4E-11 1.5E-15 87.4 7.3 76 150-225 3-79 (90)
60 3mdf_A Peptidyl-prolyl CIS-tra 99.2 4.7E-11 1.6E-15 85.3 7.2 78 147-225 6-83 (85)
61 2do4_A Squamous cell carcinoma 99.2 1.8E-10 6.1E-15 85.1 10.1 78 146-225 15-92 (100)
62 3ucg_A Polyadenylate-binding p 99.2 6.8E-11 2.3E-15 85.1 7.5 76 148-225 6-81 (89)
63 2dnz_A Probable RNA-binding pr 99.2 1.5E-10 5.2E-15 84.4 9.5 78 147-225 4-81 (95)
64 1uaw_A Mouse-musashi-1; RNP-ty 99.2 6.3E-11 2.1E-15 83.2 7.1 74 150-225 2-75 (77)
65 1wi8_A EIF-4B, eukaryotic tran 99.2 5.6E-11 1.9E-15 88.6 7.0 75 148-225 15-90 (104)
66 2cq0_A Eukaryotic translation 99.2 1.6E-10 5.4E-15 85.9 9.4 79 146-225 13-91 (103)
67 3ulh_A THO complex subunit 4; 99.2 1E-10 3.4E-15 87.3 8.3 77 147-225 28-104 (107)
68 2lkz_A RNA-binding protein 5; 99.2 7.3E-11 2.5E-15 88.9 7.4 76 149-224 10-90 (95)
69 2e5h_A Zinc finger CCHC-type a 99.1 9.5E-11 3.3E-15 85.4 7.7 78 147-225 15-92 (94)
70 1p27_B RNA-binding protein 8A; 99.1 1.5E-10 5.1E-15 86.2 8.9 79 146-225 21-99 (106)
71 2cqb_A Peptidyl-prolyl CIS-tra 99.1 1E-10 3.6E-15 86.5 7.8 78 147-225 11-88 (102)
72 2dgo_A Cytotoxic granule-assoc 99.1 1.2E-10 4.2E-15 88.1 8.4 79 146-225 13-91 (115)
73 2ywk_A Putative RNA-binding pr 99.1 8.7E-11 3E-15 85.7 7.3 77 147-225 15-91 (95)
74 1p1t_A Cleavage stimulation fa 99.1 1.7E-10 5.8E-15 85.5 8.7 76 149-225 9-84 (104)
75 1x5s_A Cold-inducible RNA-bind 99.1 1.1E-10 3.9E-15 86.3 7.6 78 147-225 11-88 (102)
76 2fc9_A NCL protein; structure 99.1 1.9E-10 6.5E-15 85.2 8.7 74 147-225 14-87 (101)
77 1whw_A Hypothetical protein ri 99.1 1.2E-10 4E-15 85.8 7.4 78 147-225 7-84 (99)
78 2jrs_A RNA-binding protein 39; 99.1 2.9E-10 9.9E-15 86.4 9.6 78 147-225 25-102 (108)
79 2hgn_A Heterogeneous nuclear r 99.1 2.2E-11 7.4E-16 98.2 3.1 75 63-139 47-124 (139)
80 2i2y_A Fusion protein consists 99.1 3.5E-10 1.2E-14 89.6 10.0 116 103-225 13-144 (150)
81 2dnh_A Bruno-like 5, RNA bindi 99.1 4.1E-10 1.4E-14 83.7 9.6 77 147-225 14-93 (105)
82 2d9p_A Polyadenylate-binding p 99.1 4.2E-10 1.4E-14 83.5 9.7 77 146-225 13-89 (103)
83 2cpz_A CUG triplet repeat RNA- 99.1 2.6E-10 9E-15 86.4 8.7 78 147-225 24-101 (115)
84 2mss_A Protein (musashi1); RNA 99.1 9.7E-11 3.3E-15 82.2 5.8 72 151-224 2-73 (75)
85 2do0_A HnRNP M, heterogeneous 99.1 3.3E-10 1.1E-14 85.4 9.1 76 148-225 15-90 (114)
86 2j76_E EIF-4B, EIF4B, eukaryot 99.1 5.9E-11 2E-15 88.5 4.9 77 146-225 17-94 (100)
87 1iqt_A AUF1, heterogeneous nuc 99.1 2.7E-11 9.1E-16 84.9 2.8 74 150-225 1-74 (75)
88 2div_A TRNA selenocysteine ass 99.1 1.8E-10 6E-15 84.9 7.4 73 148-220 9-81 (99)
89 2cpf_A RNA binding motif prote 99.1 1.9E-10 6.3E-15 84.6 7.4 78 147-225 4-84 (98)
90 1x4h_A RNA-binding protein 28; 99.1 1.7E-10 5.8E-15 86.4 7.2 78 147-225 14-97 (111)
91 2dnm_A SRP46 splicing factor; 99.1 1.4E-10 4.8E-15 86.2 6.5 78 147-225 12-89 (103)
92 1s79_A Lupus LA protein; RRM, 99.1 1.7E-10 5.8E-15 87.7 6.9 77 145-224 8-84 (103)
93 2x1f_A MRNA 3'-END-processing 99.1 2E-10 6.9E-15 84.4 7.0 76 149-225 3-78 (96)
94 2dgs_A DAZ-associated protein 99.1 4.3E-10 1.5E-14 82.9 8.7 77 147-225 9-85 (99)
95 2fy1_A RNA-binding motif prote 99.1 5.3E-10 1.8E-14 85.9 9.1 77 147-225 6-82 (116)
96 4a8x_A RNA-binding protein wit 99.1 2.1E-10 7.2E-15 82.2 6.4 77 148-225 4-81 (88)
97 1rk8_A CG8781-PA, CG8781-PA pr 99.1 4E-10 1.4E-14 91.1 8.7 117 108-225 11-148 (165)
98 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.1 1.8E-10 6.1E-15 89.3 6.2 78 147-225 62-139 (140)
99 2jwn_A Embryonic polyadenylate 99.1 4.2E-10 1.5E-14 86.1 8.2 76 148-225 36-111 (124)
100 1oo0_B CG8781-PA, drosophila Y 99.1 3.3E-10 1.1E-14 85.1 7.4 79 146-225 24-102 (110)
101 1x5u_A Splicing factor 3B subu 99.1 3E-10 1E-14 84.4 7.1 78 147-225 14-91 (105)
102 2cph_A RNA binding motif prote 99.1 3.9E-10 1.3E-14 83.9 7.6 78 147-225 14-93 (107)
103 2khc_A Testis-specific RNP-typ 99.1 2.3E-10 8E-15 86.9 6.5 78 147-225 39-116 (118)
104 2cq4_A RNA binding motif prote 99.1 2.8E-10 9.6E-15 86.1 6.7 76 148-225 25-100 (114)
105 2dgv_A HnRNP M, heterogeneous 99.0 5.6E-10 1.9E-14 80.9 7.9 76 147-225 7-82 (92)
106 2dng_A Eukaryotic translation 99.0 1.9E-09 6.4E-14 80.1 11.0 74 60-135 13-90 (103)
107 2cqd_A RNA-binding region cont 99.0 2.9E-10 9.8E-15 86.3 6.5 77 147-225 16-92 (116)
108 3ex7_B RNA-binding protein 8A; 99.0 4.9E-10 1.7E-14 86.0 7.8 79 146-225 20-98 (126)
109 2dhg_A TRNA selenocysteine ass 99.0 3.3E-10 1.1E-14 84.0 6.6 76 147-224 8-85 (104)
110 2kxn_B Transformer-2 protein h 99.0 3.6E-10 1.2E-14 88.9 7.1 78 147-225 45-122 (129)
111 2kt5_A RNA and export factor-b 99.0 8.1E-10 2.8E-14 84.9 8.9 76 148-225 35-110 (124)
112 2cq3_A RNA-binding protein 9; 99.0 8.9E-10 3E-14 81.8 8.8 76 147-225 14-89 (103)
113 1wi8_A EIF-4B, eukaryotic tran 99.0 1.8E-09 6.1E-14 80.4 10.4 74 61-136 14-92 (104)
114 3s8s_A Histone-lysine N-methyl 99.0 1.1E-09 3.9E-14 83.9 9.3 77 148-225 6-82 (110)
115 2rs2_A Musashi-1, RNA-binding 99.0 3.5E-10 1.2E-14 85.9 6.3 78 146-225 23-100 (109)
116 1x4b_A Heterogeneous nuclear r 99.0 7.9E-10 2.7E-14 83.9 8.2 76 148-225 27-102 (116)
117 1x5o_A RNA binding motif, sing 99.0 1.9E-09 6.4E-14 81.4 10.1 77 147-225 24-108 (114)
118 1u6f_A Tcubp1, RNA-binding pro 99.0 5.8E-10 2E-14 86.9 7.5 77 148-225 42-118 (139)
119 1h2v_Z 20 kDa nuclear CAP bind 99.0 9.1E-10 3.1E-14 87.8 8.8 78 147-225 38-115 (156)
120 2cqp_A RNA-binding protein 12; 99.0 4.8E-09 1.6E-13 76.9 12.0 75 60-135 13-92 (98)
121 2lxi_A RNA-binding protein 10; 99.0 3.3E-10 1.1E-14 83.6 5.6 71 65-135 4-80 (91)
122 1fxl_A Paraneoplastic encephal 99.0 1E-09 3.5E-14 85.4 8.7 77 148-225 2-78 (167)
123 2cqg_A TDP-43, TAR DNA-binding 99.0 1.1E-09 3.8E-14 81.3 8.2 76 147-225 14-89 (103)
124 2dgp_A Bruno-like 4, RNA bindi 99.0 6.4E-10 2.2E-14 82.8 6.7 79 146-225 11-92 (106)
125 2lea_A Serine/arginine-rich sp 99.0 3.9E-10 1.3E-14 89.1 5.8 115 105-225 6-123 (135)
126 2dh8_A DAZ-associated protein 99.0 3.4E-10 1.2E-14 84.3 5.1 76 147-224 15-90 (105)
127 3n9u_C Cleavage and polyadenyl 99.0 7.6E-10 2.6E-14 90.0 7.5 78 148-225 55-133 (156)
128 2ki2_A SS-DNA binding protein 99.0 3E-10 1E-14 82.3 4.5 75 149-225 2-76 (90)
129 1x4e_A RNA binding motif, sing 99.0 5.5E-10 1.9E-14 80.0 5.8 71 147-218 4-74 (85)
130 1wg1_A KIAA1579 protein, homol 99.0 2.3E-09 7.8E-14 77.9 8.9 71 147-225 4-74 (88)
131 3md3_A Nuclear and cytoplasmic 99.0 9.1E-10 3.1E-14 85.7 7.2 75 149-225 1-75 (166)
132 1fjc_A Nucleolin RBD2, protein 99.0 7.5E-10 2.6E-14 81.0 6.1 73 147-225 15-87 (96)
133 2m2b_A RNA-binding protein 10; 99.0 4.9E-10 1.7E-14 87.4 5.4 77 148-225 23-104 (131)
134 3ns6_A Eukaryotic translation 99.0 6.9E-10 2.4E-14 82.9 5.5 77 148-225 6-89 (100)
135 2la6_A RNA-binding protein FUS 99.0 4.4E-09 1.5E-13 77.6 9.7 71 63-133 14-96 (99)
136 1b7f_A Protein (SXL-lethal pro 98.9 1.3E-09 4.6E-14 85.3 7.1 76 148-224 3-78 (168)
137 2err_A Ataxin-2-binding protei 98.9 2.2E-09 7.6E-14 81.3 8.0 76 147-225 28-103 (109)
138 2cpe_A RNA-binding protein EWS 98.9 8.3E-09 2.8E-13 77.7 10.9 73 63-135 16-100 (113)
139 2e5j_A Methenyltetrahydrofolat 98.9 2.8E-09 9.6E-14 78.6 8.0 72 148-225 19-90 (97)
140 1l3k_A Heterogeneous nuclear r 98.9 2.1E-09 7.2E-14 86.4 7.8 76 147-224 12-87 (196)
141 2j76_E EIF-4B, EIF4B, eukaryot 98.9 7.4E-10 2.5E-14 82.4 4.6 72 62-135 19-95 (100)
142 2ek1_A RNA-binding protein 12; 98.9 6.5E-09 2.2E-13 75.6 9.5 72 63-135 16-92 (95)
143 2cqi_A Nucleolysin TIAR; RNA r 98.9 2.2E-09 7.5E-14 79.6 7.0 76 147-225 14-89 (103)
144 1fj7_A Nucleolin RBD1, protein 98.9 3.5E-10 1.2E-14 83.7 2.6 76 147-225 16-91 (101)
145 3n9u_C Cleavage and polyadenyl 98.9 2.3E-09 7.7E-14 87.2 7.5 74 63-136 56-135 (156)
146 1x4a_A Splicing factor, argini 98.9 4.7E-09 1.6E-13 78.7 8.7 75 147-225 21-95 (109)
147 4f25_A Polyadenylate-binding p 98.9 2.7E-09 9.1E-14 81.6 7.4 74 149-225 6-79 (115)
148 2do4_A Squamous cell carcinoma 98.9 8.5E-09 2.9E-13 76.0 9.9 70 65-135 20-93 (100)
149 2lkz_A RNA-binding protein 5; 98.9 3.3E-09 1.1E-13 79.8 7.7 69 65-133 12-90 (95)
150 3lqv_A PRE-mRNA branch site pr 98.9 4.1E-09 1.4E-13 79.6 8.2 75 147-225 7-81 (115)
151 2err_A Ataxin-2-binding protei 98.9 6.6E-09 2.3E-13 78.7 9.1 73 62-135 29-104 (109)
152 2dnl_A Cytoplasmic polyadenyla 98.9 2.8E-09 9.7E-14 81.2 7.1 62 148-211 8-72 (114)
153 2cpx_A Hypothetical protein FL 98.9 3.2E-09 1.1E-13 80.0 7.2 77 148-225 25-101 (115)
154 3p5t_L Cleavage and polyadenyl 98.9 3.7E-09 1.3E-13 77.0 7.3 71 65-135 4-80 (90)
155 2lcw_A RNA-binding protein FUS 98.4 1.8E-10 6.1E-15 87.7 0.0 78 147-224 6-90 (116)
156 2qfj_A FBP-interacting repress 98.9 2.7E-09 9.3E-14 87.0 7.0 75 148-223 28-102 (216)
157 2cq3_A RNA-binding protein 9; 98.9 2.2E-08 7.7E-13 74.1 11.1 73 63-136 16-91 (103)
158 2f3j_A RNA and export factor b 98.9 3.4E-09 1.2E-13 87.6 7.3 76 148-225 88-163 (177)
159 3nmr_A Cugbp ELAV-like family 98.9 6.4E-09 2.2E-13 81.7 8.5 69 147-216 2-72 (175)
160 2krb_A Eukaryotic translation 98.9 2.7E-09 9.2E-14 76.2 5.8 71 149-222 2-79 (81)
161 2fc8_A NCL protein; structure 98.9 1.4E-08 4.9E-13 74.9 9.9 67 65-135 18-89 (102)
162 2cqc_A Arginine/serine-rich sp 98.9 9.5E-09 3.2E-13 74.6 8.7 71 63-134 16-91 (95)
163 2dis_A Unnamed protein product 98.9 2.1E-09 7.3E-14 80.3 5.2 78 146-225 6-88 (109)
164 2khc_A Testis-specific RNP-typ 98.9 1.4E-08 4.9E-13 76.9 10.0 71 61-132 39-114 (118)
165 2dgo_A Cytotoxic granule-assoc 98.9 2.3E-08 7.7E-13 75.5 10.8 76 60-136 13-93 (115)
166 2cpi_A CCR4-NOT transcription 98.9 1E-08 3.5E-13 77.7 8.7 78 146-224 13-96 (111)
167 2dnh_A Bruno-like 5, RNA bindi 98.9 1.8E-08 6.3E-13 74.6 10.0 72 63-135 16-94 (105)
168 3q2s_C Cleavage and polyadenyl 98.9 3.4E-09 1.1E-13 91.0 6.7 78 148-225 68-146 (229)
169 4f02_A Polyadenylate-binding p 98.9 6.7E-09 2.3E-13 86.5 8.4 76 148-224 15-90 (213)
170 1x4c_A Splicing factor, argini 98.9 5E-09 1.7E-13 78.9 6.9 70 147-224 14-88 (108)
171 3s7r_A Heterogeneous nuclear r 98.8 8.7E-09 3E-13 74.0 7.9 69 64-133 13-85 (87)
172 2dgs_A DAZ-associated protein 98.8 1.8E-08 6.3E-13 74.0 9.8 73 63-136 11-87 (99)
173 2hzc_A Splicing factor U2AF 65 98.8 8.8E-09 3E-13 73.6 7.8 70 148-224 6-85 (87)
174 2jvr_A Nucleolar protein 3; RN 98.8 3.4E-09 1.2E-13 82.1 5.7 75 147-225 27-101 (111)
175 2rs2_A Musashi-1, RNA-binding 98.8 8.6E-09 2.9E-13 78.2 7.7 71 64-135 27-101 (109)
176 1x4h_A RNA-binding protein 28; 98.8 2.1E-08 7.2E-13 74.9 9.3 71 64-135 17-98 (111)
177 2cq4_A RNA binding motif prote 98.8 8E-09 2.7E-13 78.0 7.0 72 63-135 26-101 (114)
178 3bs9_A Nucleolysin TIA-1 isofo 98.8 1.4E-08 4.9E-13 72.5 8.0 73 62-135 6-83 (87)
179 3md1_A Nuclear and cytoplasmic 98.8 2.1E-08 7.2E-13 71.0 8.8 70 65-135 4-78 (83)
180 2ywk_A Putative RNA-binding pr 98.8 7.8E-09 2.7E-13 75.2 6.7 71 62-133 16-90 (95)
181 2cqg_A TDP-43, TAR DNA-binding 98.8 2.1E-08 7.3E-13 74.2 9.1 70 65-135 18-90 (103)
182 2voo_A Lupus LA protein; RNA-b 98.8 9.5E-09 3.3E-13 85.9 7.9 74 148-224 109-182 (193)
183 2xs2_A Deleted in azoospermia- 98.8 3E-09 1E-13 78.8 4.3 72 148-223 9-80 (102)
184 2cpz_A CUG triplet repeat RNA- 98.8 4.1E-08 1.4E-12 74.2 10.6 71 64-135 27-102 (115)
185 3egn_A RNA-binding protein 40; 98.8 1.8E-08 6.2E-13 79.1 8.9 75 148-225 45-126 (143)
186 4fxv_A ELAV-like protein 1; RN 98.8 1.4E-08 4.9E-13 76.1 7.9 69 65-134 22-95 (99)
187 2mss_A Protein (musashi1); RNA 98.8 6.6E-09 2.3E-13 72.6 5.7 67 65-132 2-72 (75)
188 2cqh_A IGF-II mRNA-binding pro 98.8 9E-09 3.1E-13 74.9 6.6 71 148-225 8-79 (93)
189 2kt5_A RNA and export factor-b 98.8 1.1E-07 3.7E-12 72.9 12.8 75 61-136 34-112 (124)
190 1x4b_A Heterogeneous nuclear r 98.8 2.9E-08 1E-12 75.1 9.5 73 63-136 28-104 (116)
191 1x5u_A Splicing factor 3B subu 98.8 2.4E-08 8.3E-13 74.0 8.8 72 64-136 17-93 (105)
192 2dh8_A DAZ-associated protein 98.8 1.1E-08 3.7E-13 76.0 7.0 72 63-135 17-92 (105)
193 1uaw_A Mouse-musashi-1; RNP-ty 98.8 1.4E-08 4.8E-13 71.0 7.1 68 65-133 3-74 (77)
194 2hvz_A Splicing factor, argini 98.8 7.6E-09 2.6E-13 76.4 6.0 70 150-225 2-71 (101)
195 2cqi_A Nucleolysin TIAR; RNA r 98.8 4E-08 1.4E-12 72.7 9.8 74 62-136 15-91 (103)
196 2fc9_A NCL protein; structure 98.8 8.1E-08 2.8E-12 70.8 11.4 70 63-136 16-89 (101)
197 2cq0_A Eukaryotic translation 98.8 5.9E-08 2E-12 71.8 10.7 73 62-135 15-92 (103)
198 2e5h_A Zinc finger CCHC-type a 98.8 2.5E-08 8.7E-13 72.3 8.5 68 65-133 19-91 (94)
199 2cpj_A Non-POU domain-containi 98.8 3E-08 1E-12 73.0 9.0 72 147-225 14-85 (99)
200 1nu4_A U1A RNA binding domain; 98.8 8.3E-09 2.8E-13 75.3 5.8 74 147-224 7-84 (97)
201 2d9p_A Polyadenylate-binding p 98.8 5.8E-08 2E-12 71.8 10.4 71 63-135 16-90 (103)
202 2cph_A RNA binding motif prote 98.8 3.1E-08 1.1E-12 73.5 8.9 71 65-136 18-95 (107)
203 2yh0_A Splicing factor U2AF 65 98.8 2.5E-09 8.6E-14 86.1 3.1 74 148-224 4-83 (198)
204 1x5t_A Splicing factor 3B subu 98.8 4.4E-08 1.5E-12 71.3 9.5 73 63-136 6-84 (96)
205 2dgx_A KIAA0430 protein; RRM d 98.8 8.5E-09 2.9E-13 76.1 5.6 75 147-225 8-86 (96)
206 3ulh_A THO complex subunit 4; 98.8 3.4E-08 1.2E-12 73.4 8.9 73 61-134 28-104 (107)
207 3ucg_A Polyadenylate-binding p 98.8 1.5E-08 5.3E-13 72.6 6.7 71 64-135 8-82 (89)
208 2dnz_A Probable RNA-binding pr 98.8 5.4E-08 1.8E-12 70.7 9.6 71 64-135 7-82 (95)
209 3mdf_A Peptidyl-prolyl CIS-tra 98.8 1.2E-08 4.2E-13 72.6 6.0 70 63-133 8-82 (85)
210 1whw_A Hypothetical protein ri 98.7 4.5E-08 1.5E-12 71.8 9.0 75 62-137 8-87 (99)
211 3lqv_A PRE-mRNA branch site pr 98.7 6.7E-09 2.3E-13 78.4 4.6 99 64-176 10-111 (115)
212 3q2s_C Cleavage and polyadenyl 98.7 8.8E-09 3E-13 88.4 5.9 72 64-135 70-147 (229)
213 2la4_A Nuclear and cytoplasmic 98.7 2.1E-08 7.2E-13 74.0 7.1 71 147-224 26-96 (101)
214 2dnm_A SRP46 splicing factor; 98.7 2.5E-08 8.4E-13 73.9 7.5 73 63-136 14-91 (103)
215 2dnq_A RNA-binding protein 4B; 98.7 3.3E-08 1.1E-12 71.6 8.0 70 147-225 7-76 (90)
216 3beg_B Splicing factor, argini 98.7 1E-08 3.5E-13 78.4 5.5 66 147-220 15-80 (115)
217 2cqb_A Peptidyl-prolyl CIS-tra 98.7 7.6E-08 2.6E-12 70.9 10.0 71 64-135 14-89 (102)
218 2g4b_A Splicing factor U2AF 65 98.7 4.8E-09 1.6E-13 82.6 3.7 73 148-224 4-83 (172)
219 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.7 4.6E-08 1.6E-12 75.5 9.2 70 63-133 64-138 (140)
220 2nlw_A Eukaryotic translation 98.7 8.5E-09 2.9E-13 77.4 4.8 75 148-225 15-96 (105)
221 2do0_A HnRNP M, heterogeneous 98.7 6.3E-08 2.2E-12 72.7 9.6 71 64-135 17-91 (114)
222 2jvo_A Nucleolar protein 3; nu 98.7 4.1E-08 1.4E-12 74.5 8.6 69 147-224 30-98 (108)
223 2kvi_A Nuclear polyadenylated 98.7 3.8E-08 1.3E-12 72.4 8.2 70 147-225 9-79 (96)
224 1x4c_A Splicing factor, argini 98.7 4.9E-08 1.7E-12 73.4 8.9 70 62-137 15-92 (108)
225 1x5s_A Cold-inducible RNA-bind 98.7 4.2E-08 1.4E-12 72.3 8.3 72 63-135 13-89 (102)
226 2jrs_A RNA-binding protein 39; 98.7 6.9E-08 2.4E-12 73.1 9.5 72 63-135 27-103 (108)
227 2e44_A Insulin-like growth fac 98.7 1.1E-08 3.8E-13 74.7 4.9 73 148-225 15-88 (96)
228 1why_A Hypothetical protein ri 98.7 2.4E-08 8.2E-13 73.3 6.5 71 148-225 17-89 (97)
229 2xnq_A Nuclear polyadenylated 98.7 3.6E-08 1.2E-12 73.3 7.4 71 146-225 20-91 (97)
230 2m2b_A RNA-binding protein 10; 98.7 2.2E-08 7.6E-13 77.9 6.6 70 65-135 26-105 (131)
231 2cpd_A Apobec-1 stimulating pr 98.7 6.5E-08 2.2E-12 71.2 8.4 72 147-225 14-85 (99)
232 2dgt_A RNA-binding protein 30; 98.7 5.1E-08 1.7E-12 70.9 7.7 70 147-225 9-78 (92)
233 1iqt_A AUF1, heterogeneous nuc 98.7 7.4E-09 2.5E-13 72.2 3.0 59 65-124 2-62 (75)
234 1x4g_A Nucleolysin TIAR; struc 98.7 2.3E-08 7.8E-13 75.1 5.8 73 146-225 23-95 (109)
235 1x4e_A RNA binding motif, sing 98.7 5.6E-08 1.9E-12 69.4 7.5 68 63-131 6-78 (85)
236 1s79_A Lupus LA protein; RRM, 98.7 2.4E-08 8.1E-13 75.8 5.8 68 65-133 14-84 (103)
237 1fje_B Nucleolin RBD12, protei 98.7 5.5E-09 1.9E-13 82.9 2.3 76 146-224 11-86 (175)
238 2ytc_A PRE-mRNA-splicing facto 98.7 3.1E-08 1.1E-12 70.6 6.0 71 147-224 11-82 (85)
239 2div_A TRNA selenocysteine ass 98.7 5.5E-08 1.9E-12 71.3 7.3 61 63-123 10-72 (99)
240 2cjk_A Nuclear polyadenylated 98.7 1.6E-08 5.3E-13 79.3 4.6 62 148-210 3-64 (167)
241 1p1t_A Cleavage stimulation fa 98.7 7.9E-08 2.7E-12 70.9 8.1 71 65-136 11-86 (104)
242 2cqd_A RNA-binding region cont 98.7 6.6E-08 2.3E-12 73.1 7.9 72 63-135 18-93 (116)
243 2jwn_A Embryonic polyadenylate 98.7 3.4E-08 1.2E-12 75.4 6.2 71 64-135 38-112 (124)
244 1u6f_A Tcubp1, RNA-binding pro 98.7 1.3E-07 4.3E-12 73.6 9.6 73 63-136 43-120 (139)
245 3pgw_S U1-70K; protein-RNA com 98.7 4E-08 1.4E-12 92.0 7.9 77 148-225 102-178 (437)
246 2dgp_A Bruno-like 4, RNA bindi 98.7 1.3E-07 4.3E-12 70.2 9.1 73 63-136 14-94 (106)
247 2dgv_A HnRNP M, heterogeneous 98.7 5.4E-08 1.9E-12 70.3 6.8 71 62-134 8-82 (92)
248 2jvr_A Nucleolar protein 3; RN 98.6 5.6E-08 1.9E-12 75.2 7.2 71 63-135 29-102 (111)
249 1wg1_A KIAA1579 protein, homol 98.6 2.2E-07 7.6E-12 67.2 10.0 65 65-135 8-75 (88)
250 2cpf_A RNA binding motif prote 98.6 6.1E-08 2.1E-12 70.9 7.0 70 65-135 8-85 (98)
251 2fy1_A RNA-binding motif prote 98.6 1.4E-07 4.8E-12 72.3 9.2 72 64-136 9-84 (116)
252 1wex_A Hypothetical protein (r 98.6 5.3E-08 1.8E-12 74.3 6.7 70 148-224 15-86 (104)
253 2dnl_A Cytoplasmic polyadenyla 98.6 1.1E-07 3.8E-12 72.3 8.5 66 65-132 11-82 (114)
254 3s8s_A Histone-lysine N-methyl 98.6 9.4E-08 3.2E-12 73.1 7.9 70 65-135 9-83 (110)
255 2ad9_A Polypyrimidine tract-bi 98.6 1.2E-07 4.3E-12 74.6 8.8 69 148-224 31-102 (119)
256 2x1f_A MRNA 3'-END-processing 98.6 7.7E-08 2.6E-12 70.5 7.1 73 64-137 4-81 (96)
257 1wf1_A RNA-binding protein RAL 98.6 5.8E-08 2E-12 73.0 6.4 69 148-225 27-96 (110)
258 2kxn_B Transformer-2 protein h 98.6 1E-07 3.6E-12 74.7 8.1 70 63-133 47-121 (129)
259 1p27_B RNA-binding protein 8A; 98.6 1.3E-07 4.5E-12 70.1 8.2 71 63-134 24-99 (106)
260 1whx_A Hypothetical protein ri 98.6 4.6E-08 1.6E-12 74.4 5.8 70 148-224 10-79 (111)
261 2e5g_A U6 snRNA-specific termi 98.6 7.3E-08 2.5E-12 70.5 6.6 70 148-224 8-77 (94)
262 2dnp_A RNA-binding protein 14; 98.6 4.4E-08 1.5E-12 70.9 5.3 70 147-225 8-77 (90)
263 2dgu_A Heterogeneous nuclear r 98.6 3.9E-08 1.3E-12 73.1 5.0 69 148-225 11-79 (103)
264 2dgx_A KIAA0430 protein; RRM d 98.6 1.3E-07 4.3E-12 69.7 7.7 72 62-135 9-87 (96)
265 2jvo_A Nucleolar protein 3; nu 98.6 1.1E-07 3.9E-12 72.1 7.5 64 63-133 32-98 (108)
266 2e44_A Insulin-like growth fac 98.6 5.1E-08 1.7E-12 71.1 5.3 70 64-136 17-90 (96)
267 2dhg_A TRNA selenocysteine ass 98.6 7.2E-08 2.5E-12 71.3 6.2 71 64-135 11-87 (104)
268 4a8x_A RNA-binding protein wit 98.6 5.8E-08 2E-12 69.3 5.4 70 65-135 7-82 (88)
269 2e5j_A Methenyltetrahydrofolat 98.6 3.8E-07 1.3E-11 67.0 9.9 68 64-135 21-91 (97)
270 1oo0_B CG8781-PA, drosophila Y 98.6 1.3E-07 4.3E-12 70.8 7.4 71 63-134 27-102 (110)
271 2cq1_A PTB-like protein L; RRM 98.6 1.8E-07 6.2E-12 71.0 8.3 70 148-224 15-86 (101)
272 1x4a_A Splicing factor, argini 98.6 2.4E-07 8.2E-12 69.3 8.5 70 63-135 23-96 (109)
273 1fjc_A Nucleolin RBD2, protein 98.6 1.5E-07 5.2E-12 68.6 7.1 69 62-135 16-88 (96)
274 2cq1_A PTB-like protein L; RRM 98.6 4.6E-07 1.6E-11 68.7 9.8 68 64-136 17-89 (101)
275 3ex7_B RNA-binding protein 8A; 98.6 1.5E-07 5.2E-12 72.0 7.2 73 62-135 22-99 (126)
276 3r27_A HnRNP L, heterogeneous 98.6 9.8E-08 3.4E-12 73.3 6.1 70 148-224 21-92 (100)
277 2la4_A Nuclear and cytoplasmic 98.6 7.5E-08 2.6E-12 71.0 5.2 56 63-123 28-83 (101)
278 2a3j_A U1 small nuclear ribonu 98.5 1.8E-07 6.2E-12 73.8 7.7 73 148-224 29-105 (127)
279 1h2v_Z 20 kDa nuclear CAP bind 98.5 1.4E-07 4.9E-12 74.9 7.1 72 63-135 40-116 (156)
280 2xs2_A Deleted in azoospermia- 98.5 6.4E-08 2.2E-12 71.5 4.6 70 63-134 10-82 (102)
281 2hzc_A Splicing factor U2AF 65 98.5 5.5E-08 1.9E-12 69.4 4.0 67 63-133 7-85 (87)
282 3beg_B Splicing factor, argini 98.5 5.4E-08 1.9E-12 74.4 4.1 67 65-137 19-93 (115)
283 1qm9_A Polypyrimidine tract-bi 98.5 9.4E-08 3.2E-12 77.5 5.7 73 147-225 2-75 (198)
284 1fj7_A Nucleolin RBD1, protein 98.5 8.2E-08 2.8E-12 70.8 4.7 71 63-135 18-92 (101)
285 1x4f_A Matrin 3; structural ge 98.5 1.5E-06 5E-11 67.8 11.9 67 64-135 27-99 (112)
286 2kn4_A Immunoglobulin G-bindin 98.5 1.9E-07 6.5E-12 73.9 7.0 73 63-136 71-148 (158)
287 1x4d_A Matrin 3; structural ge 98.5 1.2E-07 4.1E-12 72.5 5.6 70 147-224 14-87 (102)
288 1x5o_A RNA binding motif, sing 98.5 5.9E-07 2E-11 67.5 8.9 59 64-123 27-86 (114)
289 1x4f_A Matrin 3; structural ge 98.5 3.9E-07 1.3E-11 71.0 8.0 69 148-224 25-97 (112)
290 1wex_A Hypothetical protein (r 98.5 8.6E-07 2.9E-11 67.5 9.8 68 64-136 17-89 (104)
291 2cpi_A CCR4-NOT transcription 98.5 4.3E-07 1.5E-11 68.6 8.0 71 65-136 18-99 (111)
292 2dgt_A RNA-binding protein 30; 98.5 1.7E-06 5.7E-11 62.7 10.8 66 63-135 11-79 (92)
293 1x4d_A Matrin 3; structural ge 98.5 4.8E-07 1.6E-11 69.1 8.1 68 64-136 17-90 (102)
294 1sjq_A Polypyrimidine tract-bi 98.5 1.2E-07 4E-12 73.4 4.6 60 146-212 14-73 (105)
295 2cpj_A Non-POU domain-containi 98.5 1.4E-06 4.8E-11 64.0 10.2 67 64-135 17-86 (99)
296 3pgw_A U1-A; protein-RNA compl 98.5 6.7E-07 2.3E-11 76.4 9.6 74 148-225 9-86 (282)
297 2hvz_A Splicing factor, argini 98.5 2.8E-07 9.6E-12 67.9 6.3 68 65-136 3-73 (101)
298 2voo_A Lupus LA protein; RNA-b 98.5 3.5E-07 1.2E-11 76.3 7.6 69 64-133 111-182 (193)
299 3sde_A Paraspeckle component 1 98.5 3.4E-07 1.2E-11 78.5 7.6 72 147-225 21-92 (261)
300 2ad9_A Polypyrimidine tract-bi 98.4 5.2E-07 1.8E-11 71.0 7.9 68 65-137 34-106 (119)
301 2f3j_A RNA and export factor b 98.4 1.3E-06 4.5E-11 72.0 10.7 74 62-136 88-165 (177)
302 2dnq_A RNA-binding protein 4B; 98.4 1.1E-06 3.9E-11 63.4 9.1 66 63-135 9-77 (90)
303 2pe8_A Splicing factor 45; RRM 98.4 7.8E-07 2.7E-11 67.8 8.3 77 148-225 8-90 (105)
304 2cqh_A IGF-II mRNA-binding pro 98.4 7.4E-07 2.5E-11 64.6 7.8 66 65-135 11-80 (93)
305 3ns6_A Eukaryotic translation 98.4 1.7E-07 5.8E-12 69.8 4.5 72 63-135 7-90 (100)
306 2adc_A Polypyrimidine tract-bi 98.4 2.5E-07 8.6E-12 77.7 5.8 73 146-224 32-105 (229)
307 2cpx_A Hypothetical protein FL 98.4 2.1E-06 7.1E-11 64.4 10.2 72 63-135 26-102 (115)
308 2diu_A KIAA0430 protein; struc 98.4 4.4E-07 1.5E-11 69.8 6.4 63 150-224 11-79 (96)
309 2dis_A Unnamed protein product 98.4 3.8E-07 1.3E-11 67.9 5.9 74 63-136 9-90 (109)
310 1wf0_A TDP-43, TAR DNA-binding 98.4 4.7E-07 1.6E-11 65.2 6.0 54 148-207 5-58 (88)
311 2lea_A Serine/arginine-rich sp 98.4 2.6E-07 9E-12 72.8 5.0 70 65-135 50-124 (135)
312 2ki2_A SS-DNA binding protein 98.4 1.6E-07 5.5E-12 67.6 3.3 70 65-136 4-78 (90)
313 2e5g_A U6 snRNA-specific termi 98.4 4.6E-07 1.6E-11 66.1 5.5 67 64-135 10-79 (94)
314 1why_A Hypothetical protein ri 98.4 9.3E-07 3.2E-11 64.7 7.0 66 65-135 20-90 (97)
315 2ytc_A PRE-mRNA-splicing facto 98.4 8.1E-07 2.8E-11 63.1 6.4 54 65-123 15-68 (85)
316 2cpd_A Apobec-1 stimulating pr 98.4 8.2E-06 2.8E-10 59.8 11.9 67 63-135 16-86 (99)
317 2xnq_A Nuclear polyadenylated 98.4 9.5E-07 3.3E-11 65.4 6.9 63 65-134 25-91 (97)
318 3zzy_A Polypyrimidine tract-bi 98.3 1.1E-06 3.8E-11 70.4 7.4 71 150-225 30-100 (130)
319 1x5p_A Negative elongation fac 98.3 2.2E-06 7.5E-11 62.8 8.3 71 146-225 13-83 (97)
320 1rk8_A CG8781-PA, CG8781-PA pr 98.3 1.4E-06 4.7E-11 70.2 7.8 70 64-134 74-148 (165)
321 1wf0_A TDP-43, TAR DNA-binding 98.3 1.1E-06 3.8E-11 63.2 6.4 67 65-135 8-75 (88)
322 3r27_A HnRNP L, heterogeneous 98.3 1.3E-06 4.6E-11 66.9 7.2 67 65-136 24-95 (100)
323 2lcw_A RNA-binding protein FUS 97.7 7.3E-08 2.5E-12 73.1 0.0 72 64-135 9-92 (116)
324 1x4g_A Nucleolysin TIAR; struc 98.3 1.1E-06 3.6E-11 65.9 6.3 68 63-135 26-96 (109)
325 2e5i_A Heterogeneous nuclear r 98.3 2.2E-06 7.5E-11 67.8 8.1 60 151-217 28-88 (124)
326 3tyt_A Heterogeneous nuclear r 98.3 2.8E-06 9.5E-11 71.3 9.0 72 147-224 3-75 (205)
327 1sjr_A Polypyrimidine tract-bi 98.3 8.3E-07 2.8E-11 73.8 5.7 69 150-223 48-118 (164)
328 2dnp_A RNA-binding protein 14; 98.2 1.4E-06 4.9E-11 62.9 5.5 64 65-135 12-78 (90)
329 1wf1_A RNA-binding protein RAL 98.2 8.7E-06 3E-10 60.9 9.9 65 64-135 29-97 (110)
330 2wbr_A GW182, gawky, LD47780P; 98.2 1.2E-06 4.1E-11 66.4 4.7 70 149-225 8-77 (89)
331 3d2w_A TAR DNA-binding protein 98.2 2.2E-06 7.6E-11 62.7 6.0 54 147-206 10-63 (89)
332 1sjq_A Polypyrimidine tract-bi 98.2 1.1E-06 3.6E-11 68.0 4.0 66 65-135 19-89 (105)
333 3egn_A RNA-binding protein 40; 98.2 3E-06 1E-10 66.2 6.7 70 64-135 47-127 (143)
334 2dgu_A Heterogeneous nuclear r 98.2 3.2E-06 1.1E-10 62.6 6.5 64 65-135 14-80 (103)
335 1whx_A Hypothetical protein ri 98.2 2.3E-06 7.8E-11 65.0 5.7 68 63-135 11-81 (111)
336 3d2w_A TAR DNA-binding protein 98.2 2.5E-06 8.4E-11 62.5 5.5 67 65-135 14-81 (89)
337 2kvi_A Nuclear polyadenylated 98.2 5.5E-06 1.9E-10 60.7 7.2 63 64-133 12-78 (96)
338 2dit_A HIV TAT specific factor 98.1 6.2E-06 2.1E-10 62.4 7.5 74 147-225 14-98 (112)
339 2j8a_A Histone-lysine N-methyl 98.1 4.1E-06 1.4E-10 68.0 6.8 75 150-225 4-92 (136)
340 2krb_A Eukaryotic translation 98.1 2.3E-06 7.7E-11 60.8 4.4 58 64-123 3-67 (81)
341 3v4m_A Splicing factor U2AF 65 98.1 1.5E-06 5.2E-11 66.1 3.6 76 149-225 6-93 (105)
342 2bz2_A Negative elongation fac 98.1 1.6E-05 5.6E-10 61.4 9.5 70 147-225 38-107 (121)
343 3pgw_S U1-70K; protein-RNA com 98.1 5.1E-06 1.8E-10 77.7 7.6 71 64-135 104-179 (437)
344 1jmt_A Splicing factor U2AF 35 98.1 6.8E-07 2.3E-11 67.8 1.3 69 154-224 21-101 (104)
345 2nlw_A Eukaryotic translation 98.1 4.5E-06 1.5E-10 62.3 5.6 70 64-135 17-97 (105)
346 2i2y_A Fusion protein consists 98.1 5.4E-06 1.8E-10 65.3 6.0 68 63-134 74-144 (150)
347 1nu4_A U1A RNA binding domain; 98.0 3.6E-06 1.2E-10 61.1 3.6 69 64-135 10-86 (97)
348 2a3j_A U1 small nuclear ribonu 98.0 1E-05 3.6E-10 63.6 6.5 68 65-135 32-107 (127)
349 1owx_A Lupus LA protein, SS-B, 98.0 4.1E-05 1.4E-09 60.7 9.9 72 147-226 17-93 (121)
350 2e5i_A Heterogeneous nuclear r 98.0 2.5E-05 8.5E-10 61.7 8.6 71 60-135 23-99 (124)
351 3ue2_A Poly(U)-binding-splicin 98.0 1.8E-05 6E-10 61.7 7.5 77 148-225 20-105 (118)
352 2cq2_A Hypothetical protein LO 98.0 3.8E-06 1.3E-10 65.8 3.7 61 148-215 25-87 (114)
353 2wbr_A GW182, gawky, LD47780P; 98.0 6.8E-06 2.3E-10 62.2 4.5 58 61-123 6-63 (89)
354 3zzy_A Polypyrimidine tract-bi 97.9 4.6E-05 1.6E-09 60.9 9.1 73 59-135 25-103 (130)
355 1sjr_A Polypyrimidine tract-bi 97.9 3.5E-05 1.2E-09 64.0 7.8 71 63-136 47-122 (164)
356 1x5p_A Negative elongation fac 97.8 0.00019 6.5E-09 52.3 10.3 64 65-135 18-84 (97)
357 2diu_A KIAA0430 protein; struc 97.8 5.7E-05 1.9E-09 58.0 7.6 61 64-134 11-80 (96)
358 2cq2_A Hypothetical protein LO 97.7 4.3E-05 1.5E-09 59.7 4.9 56 65-125 28-86 (114)
359 3u1l_A PRE-mRNA-splicing facto 97.7 6E-05 2.1E-09 65.9 6.4 71 147-224 133-224 (240)
360 2dit_A HIV TAT specific factor 97.5 0.0012 4E-08 49.7 11.3 70 63-135 16-99 (112)
361 2j8a_A Histone-lysine N-methyl 97.5 0.00021 7.3E-09 58.0 7.0 56 65-121 5-74 (136)
362 2d9o_A DNAJ (HSP40) homolog, s 97.4 0.00028 9.7E-09 53.4 6.4 60 158-225 27-86 (100)
363 2bz2_A Negative elongation fac 97.4 0.00066 2.3E-08 52.3 8.4 64 65-135 42-108 (121)
364 1jmt_A Splicing factor U2AF 35 97.4 3.4E-05 1.2E-09 58.3 0.8 65 67-132 20-100 (104)
365 2pe8_A Splicing factor 45; RRM 97.2 0.00075 2.6E-08 51.1 7.0 73 64-137 10-93 (105)
366 3s6e_A RNA-binding protein 39; 97.2 0.00095 3.2E-08 51.6 6.8 73 148-225 7-89 (114)
367 1owx_A Lupus LA protein, SS-B, 97.0 0.0023 7.9E-08 50.5 7.9 53 65-123 21-76 (121)
368 2d9o_A DNAJ (HSP40) homolog, s 97.0 0.0016 5.6E-08 49.1 6.5 58 73-134 28-86 (100)
369 3tht_A Alkylated DNA repair pr 97.0 0.00044 1.5E-08 63.3 3.8 62 148-216 18-81 (345)
370 2dhx_A Poly (ADP-ribose) polym 96.7 0.0073 2.5E-07 46.9 8.1 93 59-161 5-99 (104)
371 3v4m_A Splicing factor U2AF 65 96.6 0.0012 4.1E-08 49.9 3.0 72 64-136 7-95 (105)
372 3dxb_A Thioredoxin N-terminall 96.5 0.0057 1.9E-07 50.7 7.2 65 160-225 141-209 (222)
373 3u1l_A PRE-mRNA-splicing facto 96.4 0.0026 9E-08 55.4 4.5 54 65-123 137-199 (240)
374 3tht_A Alkylated DNA repair pr 96.3 0.0026 9.1E-08 58.2 4.0 54 65-123 21-76 (345)
375 3ue2_A Poly(U)-binding-splicin 95.9 0.013 4.3E-07 45.4 5.8 72 64-136 22-107 (118)
376 3s6e_A RNA-binding protein 39; 95.3 0.035 1.2E-06 42.6 6.2 72 64-138 9-93 (114)
377 2dhx_A Poly (ADP-ribose) polym 95.2 0.071 2.4E-06 41.3 7.5 72 146-224 6-79 (104)
378 1whv_A Poly(A)-specific ribonu 93.8 0.16 5.3E-06 39.2 6.4 59 148-216 16-76 (100)
379 2dnr_A Synaptojanin-1; RRM dom 93.5 0.078 2.7E-06 40.0 4.3 68 148-225 7-82 (91)
380 2l9w_A U4/U6 snRNA-associated- 93.5 0.11 3.8E-06 41.0 5.3 64 147-216 20-88 (117)
381 1ufw_A Synaptojanin 2; RNP dom 92.7 0.085 2.9E-06 40.2 3.4 68 148-225 15-91 (95)
382 3ctr_A Poly(A)-specific ribonu 91.8 0.25 8.7E-06 38.0 5.2 59 148-216 6-66 (101)
383 1whv_A Poly(A)-specific ribonu 91.4 0.93 3.2E-05 34.8 7.9 56 59-124 15-70 (100)
384 2dnr_A Synaptojanin-1; RRM dom 91.0 0.7 2.4E-05 34.8 6.8 74 59-140 6-87 (91)
385 1wwh_A Nucleoporin 35, nucleop 90.7 0.26 8.9E-06 38.9 4.3 61 59-125 21-81 (119)
386 1wwh_A Nucleoporin 35, nucleop 90.6 0.48 1.6E-05 37.3 5.8 68 146-221 22-89 (119)
387 1ufw_A Synaptojanin 2; RNP dom 90.4 0.2 6.8E-06 38.1 3.3 68 59-133 14-90 (95)
388 3dxb_A Thioredoxin N-terminall 86.4 1.1 3.6E-05 36.7 5.5 62 74-136 141-211 (222)
389 3ctr_A Poly(A)-specific ribonu 82.1 1.4 4.8E-05 33.9 4.0 52 65-124 9-60 (101)
390 2l9w_A U4/U6 snRNA-associated- 81.3 3.4 0.00012 32.5 6.0 72 60-133 19-95 (117)
391 1uw4_A UPF3X; nonsense mediate 78.3 8.5 0.00029 28.5 7.2 55 151-209 4-63 (91)
392 4e8u_A Putative uncharacterize 76.6 4.1 0.00014 33.9 5.5 49 150-202 14-73 (172)
393 1uw4_A UPF3X; nonsense mediate 75.8 4.6 0.00016 30.0 5.1 60 65-125 4-68 (91)
394 2l08_A Regulator of nonsense t 70.1 6.5 0.00022 29.7 4.8 55 151-209 12-71 (97)
395 3p3d_A Nucleoporin 53; structu 64.5 2.9 9.9E-05 33.5 1.9 27 192-218 63-89 (132)
396 2l08_A Regulator of nonsense t 52.0 14 0.00047 27.9 3.7 52 66-121 13-71 (97)
397 3giw_A Protein of unknown func 50.9 8.1 0.00028 34.1 2.6 29 155-183 221-250 (277)
398 3p3d_A Nucleoporin 53; structu 48.5 11 0.00039 30.0 2.9 65 60-125 5-84 (132)
399 2eo2_A Adult MALE hypothalamus 43.9 6.5 0.00022 28.3 0.7 24 156-180 46-69 (71)
400 2kvo_A Photosystem II reaction 43.8 8.3 0.00028 30.4 1.3 40 80-119 4-44 (120)
401 3d45_A Poly(A)-specific ribonu 37.2 50 0.0017 31.1 5.8 54 151-214 442-496 (507)
402 2kkc_A Sequestosome-1; P62, PB 32.9 1.6E+02 0.0053 22.1 7.5 49 157-212 43-91 (102)
403 1wey_A Calcipressin 1; structu 29.0 74 0.0025 24.2 4.5 62 150-218 7-74 (104)
404 2kkc_A Sequestosome-1; P62, PB 28.3 1.2E+02 0.0041 22.8 5.6 49 70-124 42-91 (102)
405 3d45_A Poly(A)-specific ribonu 27.4 1.1E+02 0.0036 28.9 6.3 49 69-124 446-494 (507)
406 2hpu_A NOSL protein; alpha bet 23.9 52 0.0018 26.9 3.1 89 107-221 46-140 (175)
407 1j8c_A Ubiquitin-like protein 23.9 1.7E+02 0.0058 22.0 5.9 38 61-98 31-77 (125)
408 4eyt_A Telomerase associated p 23.0 2.2E+02 0.0075 21.6 6.2 53 148-211 12-66 (129)
409 2ktr_A Sequestosome-1; autopha 21.3 2.8E+02 0.0097 21.3 7.5 48 158-212 59-106 (117)
410 4e8u_A Putative uncharacterize 20.7 53 0.0018 27.2 2.5 57 65-123 15-83 (172)
411 2xzm_P RPS24E; ribosome, trans 20.7 51 0.0017 26.7 2.3 47 158-205 31-81 (149)
412 3u5c_Y RP50, 40S ribosomal pro 20.1 1.1E+02 0.0038 24.3 4.2 46 159-205 34-83 (135)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.4e-21 Score=153.40 Aligned_cols=157 Identities=11% Similarity=0.049 Sum_probs=126.9
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQSEW 140 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~~~ 140 (227)
+++.|||++++++||.++|+.+. ....|++..++++.. +.|||+|.+.+++.+|++.+ | ..|+.+.+........
T Consensus 3 l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 3 LYVGNLDKAITEDILKQYFQVGG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp EEEEEEETTCCHHHHHHHHGGGS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred EEECCCCCcCCHHHHHHHHHhcC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 68999999999999999999886 456788988886665 68999999999999999743 4 4456666655432221
Q ss_pred ccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCce
Q 027131 141 DIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQ 220 (227)
Q Consensus 141 ~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~ 220 (227)
.......+|++.|||+++|.+||.++|+.|.-+ ..+.+..+...|++.|.|+|+|.+.++|.+|+...|+..++.++
T Consensus 82 --~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 82 --SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSY-LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp --CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTE-EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred --CCCCCCceEEECCCCCCCCHHHHHHHHhccCCe-eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 122345689999999999999999999999543 36788888666789999999999999999999988888888888
Q ss_pred eEEEe
Q 027131 221 VSVRV 225 (227)
Q Consensus 221 v~lrv 225 (227)
|.+..
T Consensus 159 i~v~~ 163 (166)
T 3md3_A 159 LRINW 163 (166)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 88764
No 2
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.88 E-value=1.2e-21 Score=158.58 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=123.3
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEccccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQSE 139 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~~~ 139 (227)
-|+|.|||++++++||.++|+.|. ....|++..++ .|.+ |.|||+|.+.+++++|+...+ ..||.+.+.......
T Consensus 15 ~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~ 93 (196)
T 1l3k_A 15 KLFIGGLSFETTDESLRSHFEQWG-TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRE 93 (196)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC--
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcc
Confidence 478999999999999999999986 34678888887 5665 689999999999999999654 456777776553322
Q ss_pred cccc--cCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccC
Q 027131 140 WDIV--MPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCL 217 (227)
Q Consensus 140 ~~~~--~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~g 217 (227)
.... ......+|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|+|.+.++|.+|+..++. .++
T Consensus 94 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~-~~~ 171 (196)
T 1l3k_A 94 DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI-EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH-TVN 171 (196)
T ss_dssp ---------CCSEEEEECCTTTCCHHHHHHHHTTTSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCC-EET
T ss_pred cccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCe-EEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCc-EEC
Confidence 1111 12234689999999999999999999999533 3578888865578999999999999999999998654 444
Q ss_pred CceeEEEe
Q 027131 218 NNQVSVRV 225 (227)
Q Consensus 218 n~~v~lrv 225 (227)
...|.++.
T Consensus 172 G~~i~v~~ 179 (196)
T 1l3k_A 172 GHNCEVRK 179 (196)
T ss_dssp TEECEEEE
T ss_pred CEEEEEEe
Confidence 55888764
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.87 E-value=2.3e-21 Score=152.26 Aligned_cols=155 Identities=11% Similarity=0.087 Sum_probs=123.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERAEQSE 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~~~~~ 139 (227)
+++.|||++++++||.++|+.+. ...+|++..++ .|.+ +.|||+|.+.+++++|++. .| ..|+.+++.......
T Consensus 5 l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 83 (167)
T 1fxl_A 5 LIVNYLPQNMTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 83 (167)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEcCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Confidence 68899999999999999999986 45678888888 7775 6899999999999999984 34 345666665442211
Q ss_pred cccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCc
Q 027131 140 WDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNN 219 (227)
Q Consensus 140 ~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~ 219 (227)
....+.+|+++|||++++.+||.++|+.|.-+ ..|.+..+...|++.|.|+|+|.+.++|.+|+...|++.++.+
T Consensus 84 ----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 84 ----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRI-ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp ----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred ----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCE-eEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 12345689999999999999999999988533 2577888775578999999999999999999998777777765
Q ss_pred eeEEEe
Q 027131 220 QVSVRV 225 (227)
Q Consensus 220 ~v~lrv 225 (227)
.+.|+|
T Consensus 159 ~~~i~v 164 (167)
T 1fxl_A 159 TEPITV 164 (167)
T ss_dssp SSCCEE
T ss_pred ccceEE
Confidence 544443
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.86 E-value=6.4e-21 Score=156.55 Aligned_cols=160 Identities=9% Similarity=0.009 Sum_probs=125.2
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQS 138 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~ 138 (227)
-|+|.|||++++++||.++|+.|. ....|++..++ .|+. +.|||+|.+.+++++|++.+ | ..||.+.|......
T Consensus 30 ~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 30 RVYVGSIYYELGEDTIRQAFAPFG-PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGS-CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhCC-CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 378999999999999999999986 34568888877 6664 68999999999999999943 4 45666677544332
Q ss_pred ccccc-------cCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHh
Q 027131 139 EWDIV-------MPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK 211 (227)
Q Consensus 139 ~~~~~-------~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~ 211 (227)
.+... ......+|+++|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|.|+|+|.+.++|.+|+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 109 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp GGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCe-eEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 21110 11335689999999999999999999999633 35778877655789999999999999999999988
Q ss_pred cCcccCCceeEEEe
Q 027131 212 NRGFCLNNQVSVRV 225 (227)
Q Consensus 212 n~rf~gn~~v~lrv 225 (227)
|+..++...|.++.
T Consensus 188 ~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 188 NLFDLGGQYLRVGK 201 (216)
T ss_dssp TTCBCSSSBCEEEE
T ss_pred cCCEeCCcEEEEEE
Confidence 88888888888763
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.86 E-value=1.7e-20 Score=148.13 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=122.8
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEcccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERAEQS 138 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~~~~ 138 (227)
.+++.|||++++++||.++|+.+. ....|++..++ .|++ |.|||+|.+++++++|++. .| ..|+.+.+......
T Consensus 5 ~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 5 NLIVNYLPQDMTDRELYALFRAIG-PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 378999999999999999999986 34677777776 6664 6899999999999999984 34 34666666544221
Q ss_pred ccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccC-
Q 027131 139 EWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCL- 217 (227)
Q Consensus 139 ~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~g- 217 (227)
. ......+|+++|||++++.+||.++|+.|.-+ ..|.+..+...|++.|.|+|+|.+.++|.+|+...|+..+.
T Consensus 84 ~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 84 G----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSI-VQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp S----STTTTCEEEEESCCTTCCHHHHHHHHTSSSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred c----ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcE-EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 1 12345689999999999999999999998533 35777777644689999999999999999999988887773
Q ss_pred -CceeEEE
Q 027131 218 -NNQVSVR 224 (227)
Q Consensus 218 -n~~v~lr 224 (227)
+.+|.++
T Consensus 159 ~~~~l~V~ 166 (168)
T 1b7f_A 159 GSQPLSVR 166 (168)
T ss_dssp CSSCCEEE
T ss_pred CCeEEEEE
Confidence 3677665
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.85 E-value=2.5e-20 Score=147.72 Aligned_cols=155 Identities=12% Similarity=0.098 Sum_probs=120.4
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCC---Cc-ceEEEEeCCHHHHHHHHHHh-Cc-----cceEEEEE
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNY---MP-FAMMMQFPSFSAYDNAFRLI-GR-----KGRLYRLE 133 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g---~~-~eAfV~F~S~~d~~~AL~~l-g~-----~gRyv~i~ 133 (227)
-+++.|||++++++||.++|+.+. ....|++..++.+ +. +.|||+|.+.+++++|++.+ |. .++.+.+.
T Consensus 5 ~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~ 83 (175)
T 3nmr_A 5 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 83 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEc
Confidence 379999999999999999999986 4578899998843 43 68999999999999999844 32 13333443
Q ss_pred EccccccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC
Q 027131 134 RAEQSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR 213 (227)
Q Consensus 134 ~~~~~~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~ 213 (227)
...... .......+|+++|||+++|.+||.++|+.|.-+ ..|.+..+.. |++.|.|+|+|.+.++|.+|+...|+
T Consensus 84 ~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 84 PADSEK---NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQI-EECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp ECGGGC---CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccccc---cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCE-EEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 332111 112245689999999999999999999998533 3688888877 68999999999999999999988887
Q ss_pred cccC---CceeEEE
Q 027131 214 GFCL---NNQVSVR 224 (227)
Q Consensus 214 rf~g---n~~v~lr 224 (227)
..+. +.+|.++
T Consensus 159 ~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 159 AQTMEGCSSPMVVK 172 (175)
T ss_dssp SCCCTTCSSCCEEE
T ss_pred CcccCCCCCCeEEE
Confidence 6444 3677765
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.85 E-value=3.2e-21 Score=152.47 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=120.6
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-CccceEEEEEEccccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-GRKGRLYRLERAEQSEWD 141 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g~~gRyv~i~~~~~~~~~ 141 (227)
|++.|||++++++||.++|+.|. ....|++..++ .|++ |.|||+|.+.+++++|+... ...||.+.+........
T Consensus 6 l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~- 83 (167)
T 2cjk_A 6 MFIGGLNWDTTEDNLREYFGKYG-TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE- 83 (167)
T ss_dssp EEECSCCTTCCHHHHHHHHTTTC-CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHH-
T ss_pred EEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhh-
Confidence 68999999999999999999986 45678888886 5665 68999999999999999942 24456555544322111
Q ss_pred cccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 142 IVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 142 ~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
.....+|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|.|+|.|.+.++|.+|+.. ++..++.++|
T Consensus 84 ---~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i 158 (167)
T 2cjk_A 84 ---QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTI-IDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN-KFIDFKDRKI 158 (167)
T ss_dssp ---HHHCEEEEEEEECTTCCHHHHHHHHHTTSCC-SEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHC-SEECSSSSCE
T ss_pred ---ccCCCeEEECCCCCCCCHHHHHHHHHhCccE-EEEEEEEcCCCCccceEEEEEECCHHHHHHHHhC-CCEEeCCeEE
Confidence 1224589999999999999999999999533 3577777765578999999999999999999984 5555566688
Q ss_pred EEEe
Q 027131 222 SVRV 225 (227)
Q Consensus 222 ~lrv 225 (227)
.++.
T Consensus 159 ~V~~ 162 (167)
T 2cjk_A 159 EIKR 162 (167)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8764
No 8
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=4.9e-20 Score=147.37 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=118.8
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEccc
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQ 137 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~ 137 (227)
...-+++.|||++++++||.++|+.+.-... +.+.....|. .+.|||+|.+++++++|+++.| ..||.++|.....
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence 3445899999999999999998887643222 2222223444 4799999999999999998555 4577777765532
Q ss_pred cccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccC
Q 027131 138 SEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCL 217 (227)
Q Consensus 138 ~~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~g 217 (227)
.. ........+|+++|||+++|.+||.++|+.| ..|.+. +.. |++.|.|+|.|.+.++|.+|+...|+..++
T Consensus 91 ~~--~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~-~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 1fje_B 91 RD--SKKVRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-SQD-GKSKGIAYIEFKSEADAEKNLEEKQGAEID 162 (175)
T ss_dssp SS--CSTTGGGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEE-CSS-SSCCSEEEEECSSHHHHHHHHHHHTEEEET
T ss_pred cc--ccccccCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEe-cCC-CCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 22 1112235689999999999999999999998 367777 444 589999999999999999999988877777
Q ss_pred CceeEEEe
Q 027131 218 NNQVSVRV 225 (227)
Q Consensus 218 n~~v~lrv 225 (227)
.++|.++.
T Consensus 163 g~~i~v~~ 170 (175)
T 1fje_B 163 GRSVSLYY 170 (175)
T ss_dssp TEEEEEEE
T ss_pred CeEEEEEe
Confidence 77887764
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.83 E-value=4.6e-20 Score=146.46 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=117.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCC----CCC-CC--CeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGC----NLT-PD--DLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~----~I~-~d--~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
+++.|||++++++||.++|+.+ .+. .. .|.-... +...+.|||+|.+.+++++|+.+.| ..||-+++...
T Consensus 7 l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 85 (172)
T 2g4b_A 7 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRP 85 (172)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECC
T ss_pred EEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCC
Confidence 6899999999999999999987 442 11 2221111 2225799999999999999996445 34666666543
Q ss_pred cccccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc
Q 027131 136 EQSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF 215 (227)
Q Consensus 136 ~~~~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf 215 (227)
.... ......+|+++|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|.|+|+|.+.++|.+|+...|+..
T Consensus 86 ~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 86 HDYQ----PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp SSCC----CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCE-EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred cccC----CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCc-eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 2111 12235689999999999999999999998533 467888886557899999999999999999999888888
Q ss_pred cCCceeEEE
Q 027131 216 CLNNQVSVR 224 (227)
Q Consensus 216 ~gn~~v~lr 224 (227)
++.++|.++
T Consensus 161 ~~g~~l~V~ 169 (172)
T 2g4b_A 161 LGDKKLLVQ 169 (172)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEE
Confidence 877788775
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.83 E-value=1.3e-19 Score=146.96 Aligned_cols=159 Identities=13% Similarity=0.134 Sum_probs=120.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCC----CCC--C-CCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGC----NLT--P-DDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~----~I~--~-d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
|+|.|||++++++||.+||+.+ .+. + +.|.-... +...+.|||+|.+++++++|+.+.| ..||.++|...
T Consensus 7 l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~ 85 (198)
T 2yh0_A 7 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRP 85 (198)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECC
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCC
Confidence 6899999999999999999976 432 1 12222221 2235799999999999999996555 46788887654
Q ss_pred ccccccc----------------ccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcC
Q 027131 136 EQSEWDI----------------VMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFP 199 (227)
Q Consensus 136 ~~~~~~~----------------~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~ 199 (227)
....... .......+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|.|+|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~afV~f~ 164 (198)
T 2yh0_A 86 HDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVKDSATGLSKGYAFCEYV 164 (198)
T ss_dssp CCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCE-EEEEEEECTTTCSEEEEEEEEES
T ss_pred CCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCc-cEEEEeecCCCCCcceEEEEEEC
Confidence 3321000 001235689999999999999999999999533 46888888655789999999999
Q ss_pred CHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 200 SQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 200 S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+.++|.+|+...|+..++...|.++.
T Consensus 165 ~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 165 DINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 99999999998777777777887763
No 11
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.82 E-value=9.9e-20 Score=152.51 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=123.3
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQSE 139 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~~ 139 (227)
++|.|||++++++||.++|+.|. ....|++..|+ .|++ +.|||+|.+.+++++|++.+ | ..||.+++.......
T Consensus 18 lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 18 LYVGDLHPDVTEAMLYEKFSPAG-PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred EEEeCCCCCCCHHHHHHHHHhhC-CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 68899999999999999999886 34678898888 5775 68999999999999999854 3 446666665443222
Q ss_pred cccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCc
Q 027131 140 WDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNN 219 (227)
Q Consensus 140 ~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~ 219 (227)
.. .....+.|++.|||+++|.+||.++|+.|.-+ ..+.++.|.+ .+.|-|+|.|.++++|.+|+...|+..++.+
T Consensus 97 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 97 SL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp HH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cc--cccccccceECCcccccHHHHHHHHHhhcCCe-EEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 11 11234579999999999999999999999633 3678888865 4789999999999999999998888888887
Q ss_pred eeEEE
Q 027131 220 QVSVR 224 (227)
Q Consensus 220 ~v~lr 224 (227)
+|.+.
T Consensus 172 ~i~V~ 176 (213)
T 4f02_A 172 KVFVG 176 (213)
T ss_dssp ECEEE
T ss_pred EEEEE
Confidence 88775
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.82 E-value=4.3e-19 Score=152.86 Aligned_cols=158 Identities=9% Similarity=0.025 Sum_probs=128.3
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQS 138 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~ 138 (227)
.+++.|||++++++||.++|+.+.- ...|++..++ .|.+ |.|||+|.+.+++.+|+..+ | ..||.+.+......
T Consensus 97 ~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 97 LLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred EEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 4789999999999999999998763 5678888887 6775 68999999999999999743 4 45677777655433
Q ss_pred ccccccCCCCcEEEEeccCCC-CCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccC
Q 027131 139 EWDIVMPYNGKTVLLQNVPRI-AVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCL 217 (227)
Q Consensus 139 ~~~~~~~~~g~~V~LrgLPf~-~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~g 217 (227)
... .....+.+|+++|||++ ++++||.++|+.|.-+ ..|.+..+.. |++.|.|+|.|.+.++|.+|+...|+..++
T Consensus 176 ~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i-~~v~i~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 176 QLT-PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSP-TFCQLACGQD-GQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp GCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCC-SEEEEEECSS-CCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCC-cccCCccEEEEecCCcccCCHHHHHHHhhCCCCe-EEEEEEECCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 321 12244678999999999 5999999999999743 4688888886 689999999999999999999988888888
Q ss_pred CceeEEEe
Q 027131 218 NNQVSVRV 225 (227)
Q Consensus 218 n~~v~lrv 225 (227)
..+|.+..
T Consensus 253 g~~l~v~~ 260 (284)
T 3smz_A 253 GSHLRVSF 260 (284)
T ss_dssp TEECEEEE
T ss_pred CeEEEEEE
Confidence 87887764
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.81 E-value=1.8e-19 Score=155.83 Aligned_cols=151 Identities=11% Similarity=0.050 Sum_probs=119.4
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEccccc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQSE 139 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~~~ 139 (227)
...|+|.|||++++++||.+||+.|. ....|++..++++..+.|||+|.+.+++++|++..| ..||.+.+...
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~---- 115 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCG-PIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL---- 115 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGS-CEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC----
Confidence 34489999999999999999999986 456788888887767899999999999999997444 34455555432
Q ss_pred cccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCc
Q 027131 140 WDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNN 219 (227)
Q Consensus 140 ~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~ 219 (227)
...+|+++|||++++.+||.++|+.|.+.-..|.+..+.. |++.|-|+|.|.+.++|.+|+...|+..+...
T Consensus 116 -------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 187 (292)
T 2ghp_A 116 -------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY 187 (292)
T ss_dssp -------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred -------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3568999999999999999999999864445788888776 57899999999999999999997777777777
Q ss_pred eeEEEe
Q 027131 220 QVSVRV 225 (227)
Q Consensus 220 ~v~lrv 225 (227)
+|.++.
T Consensus 188 ~l~v~~ 193 (292)
T 2ghp_A 188 TLVTKV 193 (292)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 777753
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.80 E-value=3.3e-19 Score=154.20 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=122.0
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHH-HhC--ccceEEEEEEccccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFR-LIG--RKGRLYRLERAEQSE 139 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~-~lg--~~gRyv~i~~~~~~~ 139 (227)
.+++.|||++++++||.++|+.+.+....|++..++.|. .+.|||+|.+.+++.+|++ +.| ..||.+.|.......
T Consensus 119 ~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 119 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 468899999999999999999998777889998888665 4689999999999999999 445 456767775543322
Q ss_pred ccc---ccCCCCcEEEEeccCCC-CCHHHHHHccCCCcccCCceEEEeecC-CCCcceeEEEEcCCHHHHHHHHHHhcCc
Q 027131 140 WDI---VMPYNGKTVLLQNVPRI-AVAEDVERFLSGCEYEASSISFMLRQS-LPDSIKWATVRFPSQTQAMDAFIRKNRG 214 (227)
Q Consensus 140 ~~~---~~~~~g~~V~LrgLPf~-~tkeEI~~FFsG~~i~p~~I~l~~d~~-~g~ptGeA~V~F~S~e~A~~Al~~~n~r 214 (227)
... .....+.+|+++|||++ +|.+||.++|+.|.-+. .|.+..+.. -|++.|.|+|+|.++++|.+|+ ..|+.
T Consensus 199 ~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~ 276 (292)
T 2ghp_A 199 KSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE-KINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS 276 (292)
T ss_dssp --------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE-EEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE
T ss_pred ccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCee-EEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC
Confidence 111 11234578999999999 99999999999995332 466666665 1479999999999999999999 88888
Q ss_pred ccCCceeEEEe
Q 027131 215 FCLNNQVSVRV 225 (227)
Q Consensus 215 f~gn~~v~lrv 225 (227)
.++..+|.+..
T Consensus 277 ~~~g~~i~V~~ 287 (292)
T 2ghp_A 277 LLGNREISVSL 287 (292)
T ss_dssp EETTEEEEEEE
T ss_pred EECCcEEEEEE
Confidence 88888888764
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.78 E-value=3.4e-18 Score=147.22 Aligned_cols=145 Identities=9% Similarity=0.013 Sum_probs=115.8
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcccccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQSEW 140 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~~~ 140 (227)
-|+|+|||++++++||.++|+.+. ...+++ +...|.|||+|.+.+++.+|++.+ | ..|+.+++...
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~~G--i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~----- 92 (284)
T 3smz_A 24 KILIRGLPGDVTNQEVHDLLSDYE--LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ----- 92 (284)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSC--EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-----
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcC--CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec-----
Confidence 478999999999999999999996 223333 233569999999999999999844 4 34555555432
Q ss_pred ccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCce
Q 027131 141 DIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQ 220 (227)
Q Consensus 141 ~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~ 220 (227)
..+.+|+++|||+++|.+||.++|+.|.-+ .+|.+..+...|++.|-|+|+|.+.++|.+|+...|+..++...
T Consensus 93 -----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 166 (284)
T 3smz_A 93 -----PTDALLCVANLPPSLTQQQFEELVRPFGSL-ERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 166 (284)
T ss_dssp -----CCSCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred -----CCCCEEEEcCCCCcCCHHHHHHHHHhcCCe-eEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 234689999999999999999999998543 35777777655789999999999999999999888877777778
Q ss_pred eEEEe
Q 027131 221 VSVRV 225 (227)
Q Consensus 221 v~lrv 225 (227)
|.+..
T Consensus 167 i~v~~ 171 (284)
T 3smz_A 167 LYVHW 171 (284)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 77653
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.77 E-value=1.3e-17 Score=143.89 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=117.5
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEccc
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQ 137 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~ 137 (227)
...-|+|.|||++++++||.++|+.|.- ...|++.-+ .|-|||+|.+.+++.+|+..+ | ..||.++|...
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a-- 93 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGE-PSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA-- 93 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCC-CSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCC-EEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec--
Confidence 3344789999999999999999999863 345666322 468999999999999999843 4 34555555443
Q ss_pred cccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHh-cCccc
Q 027131 138 SEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK-NRGFC 216 (227)
Q Consensus 138 ~~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~-n~rf~ 216 (227)
.++.+|++.|||+++|.+||.++|+.|.-+ ..|.+..+.. |++.|.|+|.|.+.++|.+|+... ++.++
T Consensus 94 --------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~v~i~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 94 --------THGAALTVKNLSPVVSNELLEQAFSQFGPV-EKAVVVVDDR-GRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp --------CCSSEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEETT-SCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred --------ccCCcccccCCCCCCCHHHHHHHHHhcCCe-EEEEeeeCCC-CCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 235689999999999999999999998533 4688888866 689999999999999999999997 66676
Q ss_pred C---CceeEEEe
Q 027131 217 L---NNQVSVRV 225 (227)
Q Consensus 217 g---n~~v~lrv 225 (227)
. ..+|.+..
T Consensus 164 ~~~~~r~i~v~~ 175 (261)
T 3sde_A 164 LTTTPRPVIVEP 175 (261)
T ss_dssp SSSSCCBCEEEE
T ss_pred ecCCCceEEEee
Confidence 4 55666653
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=136.23 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=114.5
Q ss_pred EEEEeCCCC-CCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHH-HhC--ccceEEEEEEccccc
Q 027131 64 YGKLLGISR-QTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFR-LIG--RKGRLYRLERAEQSE 139 (227)
Q Consensus 64 yv~lrgLP~-s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~-~lg--~~gRyv~i~~~~~~~ 139 (227)
.|++.|||+ +++++||.++|+.+.- ...|++..++ .+-|||+|.+.+++++|++ +.| ..||.++|.......
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~G~-i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVYGD-VQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTTCC-CSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCC-EEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 368899999 9999999999999863 5567777665 4579999999999999998 334 456767765442210
Q ss_pred cc-cc-------------------------c-----CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCC
Q 027131 140 WD-IV-------------------------M-----PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLP 188 (227)
Q Consensus 140 ~~-~~-------------------------~-----~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g 188 (227)
.. ++ . .....+|+++|||.+++.+||.++|+.|.+....|.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~---- 156 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---- 156 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----
Confidence 00 00 0 0114689999999999999999999988534445666433
Q ss_pred CcceeEEEEcCCHHHHHHHHHHhcCcccC-CceeEEE
Q 027131 189 DSIKWATVRFPSQTQAMDAFIRKNRGFCL-NNQVSVR 224 (227)
Q Consensus 189 ~ptGeA~V~F~S~e~A~~Al~~~n~rf~g-n~~v~lr 224 (227)
..|.|+|+|.+.++|.+|+...|+..++ .++|.+.
T Consensus 157 -~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 157 -DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp -TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred -CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 2468999999999999999988887777 7777765
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.72 E-value=5.2e-17 Score=137.35 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=112.5
Q ss_pred EEEeCCCC-CCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEcccccc
Q 027131 65 GKLLGISR-QTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERAEQSEW 140 (227)
Q Consensus 65 v~lrgLP~-s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~~~~~~ 140 (227)
|++.|||+ +++++||.++|+.|.- ...|++..++ .+.|||+|.+.+++++|++. .| ..||.++|........
T Consensus 37 l~V~nLp~~~~te~~L~~~F~~~G~-i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 112 (229)
T 2adc_A 37 LLVSNLNPERVTPQSLFILFGVYGD-VQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 112 (229)
T ss_dssp EEEESCCTTTCCHHHHHHHHHHHTC-EEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCC
T ss_pred EEEeCCCcccCCHHHHHHHHHhCCC-eEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccc
Confidence 57899999 9999999999998852 4567777665 45799999999999999983 34 4567777653321100
Q ss_pred c-cc---------------------c---------CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCC
Q 027131 141 D-IV---------------------M---------PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPD 189 (227)
Q Consensus 141 ~-~~---------------------~---------~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ 189 (227)
. .+ . .....+|+++|||++++.+||.++|+.|.+....|.+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----- 187 (229)
T 2adc_A 113 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----- 187 (229)
T ss_dssp CCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----
T ss_pred cCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----
Confidence 0 00 0 0114689999999999999999999998533334555432
Q ss_pred cceeEEEEcCCHHHHHHHHHHhcCcccC-CceeEEE
Q 027131 190 SIKWATVRFPSQTQAMDAFIRKNRGFCL-NNQVSVR 224 (227)
Q Consensus 190 ptGeA~V~F~S~e~A~~Al~~~n~rf~g-n~~v~lr 224 (227)
..|.|+|+|.+.++|.+|+...|+..++ +.+|.+.
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 2467999999999999999988888777 7788775
No 19
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.71 E-value=1.7e-16 Score=134.04 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=116.4
Q ss_pred EEEeCCC-CCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEccccc-
Q 027131 65 GKLLGIS-RQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQSE- 139 (227)
Q Consensus 65 v~lrgLP-~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~~~- 139 (227)
+++.||| ++++.+|+.++|+.+. ....|++..++ .|-|||+|.+.+++++|++.| | ..||-++|.......
T Consensus 7 l~V~nL~~~~~~~~~L~~~F~~~G-~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 7 LMVYGLDQSKMNCDRVFNVFCLYG-NVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp EEEECCCTTTCCHHHHHHHHTTTS-CEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred EEEeCCCcccCCHHHHHHHHHhcC-CeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 6899999 9999999999999886 33567776543 468999999999999999954 4 456766665432110
Q ss_pred --cc--------c--c-------cC-------------CCCcEEEEeccCCCCCHHHHHHccCCCccc-CCceEEEeecC
Q 027131 140 --WD--------I--V-------MP-------------YNGKTVLLQNVPRIAVAEDVERFLSGCEYE-ASSISFMLRQS 186 (227)
Q Consensus 140 --~~--------~--~-------~~-------------~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~-p~~I~l~~d~~ 186 (227)
+. + + .. ...++|++.|||+++|.+||.++|+.|.-+ +.+|.++.+.+
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 00 0 0 00 013479999999999999999999988644 46788876653
Q ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCcccCCc----eeEEEe
Q 027131 187 LPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNN----QVSVRV 225 (227)
Q Consensus 187 ~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~----~v~lrv 225 (227)
+++|.|+|+|.+.++|.+|+...|+.-+... ++.|++
T Consensus 163 --~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 163 --ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp --SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred --CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 4679999999999999999998888655433 566654
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=2.6e-15 Score=129.11 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=109.9
Q ss_pred EEEEeCCCCCCCHHHHH----HhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDII----NLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~----~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
-|+|.|||++++++||+ ++|+.|. ....|++.. .|+. +.|||+|.+.+++++|++.+ | ..||.++|...
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G-~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFG-QILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 87 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccC-CeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence 37899999999999977 8999886 223455543 5554 69999999999999999743 4 35676666432
Q ss_pred ccccc---------c--c--------------------------------------------------------------
Q 027131 136 EQSEW---------D--I-------------------------------------------------------------- 142 (227)
Q Consensus 136 ~~~~~---------~--~-------------------------------------------------------------- 142 (227)
..... . .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p 167 (282)
T 3pgw_A 88 KTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPP 167 (282)
T ss_pred ccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCC
Confidence 11100 0 0
Q ss_pred ----------------------------------ccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCC
Q 027131 143 ----------------------------------VMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLP 188 (227)
Q Consensus 143 ----------------------------------~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g 188 (227)
.......+|+++|||+++|.+||.++|+.|.-+ ..|.+..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i-~~v~~~~~~--- 243 (282)
T 3pgw_A 168 GMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGF-KEVRLVPGR--- 243 (282)
T ss_pred CCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCe-EEEEEecCC---
Confidence 000123579999999999999999999998533 245555332
Q ss_pred CcceeEEEEcCCHHHHHHHHHHhcCcccC-CceeEEE
Q 027131 189 DSIKWATVRFPSQTQAMDAFIRKNRGFCL-NNQVSVR 224 (227)
Q Consensus 189 ~ptGeA~V~F~S~e~A~~Al~~~n~rf~g-n~~v~lr 224 (227)
.|.|+|+|.+.++|.+|+...|+..++ .+.|.+.
T Consensus 244 --~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 244 --HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred --CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 368999999999999999988887776 6677764
No 21
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.8e-14 Score=109.64 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=68.2
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEccc
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQ 137 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~ 137 (227)
....|+|+||||+++++||++||+.|. ..+|++.+|++|++ |.|||+|.+++|+++|+...| ..||+++|.....
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~~--v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGLR--VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTSC--CCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCC--eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 345689999999999999999999994 47999999998775 699999999999999998555 5689999988876
Q ss_pred cccc
Q 027131 138 SEWD 141 (227)
Q Consensus 138 ~~~~ 141 (227)
.+|.
T Consensus 93 ~~~~ 96 (109)
T 2dnn_A 93 RQWV 96 (109)
T ss_dssp HHHH
T ss_pred cchh
Confidence 6664
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.50 E-value=2e-13 Score=108.70 Aligned_cols=132 Identities=11% Similarity=0.108 Sum_probs=94.6
Q ss_pred CeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C---ccceEEEEEEcccc---------ccccccCCCCcEEEEeccCC
Q 027131 92 DLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G---RKGRLYRLERAEQS---------EWDIVMPYNGKTVLLQNVPR 158 (227)
Q Consensus 92 ~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g---~~gRyv~i~~~~~~---------~~~~~~~~~g~~V~LrgLPf 158 (227)
++++.+|...--|.|||+|.+.+++++|++.+ + ..+.+. +...... ...........+|++.|||+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWT-YDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEE-EETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCccc-ccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 35677776543579999999999999999832 1 222222 1111000 00011122356899999999
Q ss_pred CCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 159 IAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 159 ~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++|.+||.++|+.|.-+ ..|.+..|...|++.|-|+|.|.+.++|.+|+...|+..++..+|.++.
T Consensus 81 ~~~~~~l~~~F~~~G~v-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 81 RTSPDTLRRVFEKYGRV-GDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp TCCHHHHHHHHHHHSCE-EEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCHHHHHHHHHhcCCe-EEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 99999999999998633 3577777765578999999999999999999998777777777887764
No 23
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.1e-13 Score=103.23 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=65.8
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
....+|+++|||+++|++||.+||+.|.++ .|.|.+|.. |++.|.|+|.|.++++|.+|+. +|+..++...|.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPD-GRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEESSS-SCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 445689999999999999999999999855 899999985 6999999999999999999995 57777777777764
No 24
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=106.23 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=65.7
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+.+|+|+||||++|.+||.+||++|.| .+|.|.+|.. |++.|.|+|.|.++++|.+|+ ++|+..++.+.|.+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~~v--~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTSCC--CEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCe--eEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 458999999999999999999999955 5899999987 699999999999999999999 6777888887877643
No 25
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.46 E-value=3.6e-14 Score=113.00 Aligned_cols=76 Identities=24% Similarity=0.218 Sum_probs=67.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
+..+|+++||||++|++||.+||+.|+|++++|.|.+|.. |++.|.|+|.|.++++|.+|+.+++ ..++...|.+.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~-~~l~gR~I~V~ 116 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHK-ERIGHRYIEVF 116 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTT-CCBTTBCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCC-CEECCEEEEEE
Confidence 4568999999999999999999999998877999999988 7999999999999999999999866 56666576654
No 26
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=109.47 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=65.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCccc---CCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYE---ASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~---p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
+..+|+|+||||++|++||.+||+.|..+ ..+|.|+++.. |+++|.|+|.|.++++|.+|+.+ |+..++.+.|.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~-gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD-GRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT-SCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 45689999999999999999999998644 47899999976 69999999999999999999997 667778776655
No 27
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.2e-13 Score=102.58 Aligned_cols=76 Identities=22% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
+..+|+++|||+++|++||.+||..|..+.+.|.|.++.. |++.|.|+|.|.++++|.+|+.. ++..++.+.|.+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~-g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSS-SCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCC-CCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 4568999999999999999999999988877799988855 68999999999999999999998 7778888787764
No 28
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.7e-13 Score=100.34 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=68.6
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEcccc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQS 138 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~~ 138 (227)
...|++.||||+++++||++||+.|....+.|++.++..|++ |.|||+|.+++++++|+...| ..||+++|......
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHH
Confidence 345899999999999999999999987777799999887775 699999999999999999654 56789999888766
Q ss_pred ccc
Q 027131 139 EWD 141 (227)
Q Consensus 139 ~~~ 141 (227)
++.
T Consensus 95 ~~~ 97 (104)
T 1wg5_A 95 EVR 97 (104)
T ss_dssp TSC
T ss_pred HHH
Confidence 654
No 29
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.6e-13 Score=101.51 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+..+|+|.|||+++|++||.+||+.|.+++.+|.|++|.. |++.|.|+|.|.++++|.+|+.. |+..++...|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNN-GQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTT-SSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCC-CCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 34568999999999999999999999998878899999985 68999999999999999999998 66666666887764
No 30
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.40 E-value=1e-13 Score=110.41 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=67.9
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEccc
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQ 137 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~ 137 (227)
...+|+|+||||+++++||++||+.|.|.+++|++.+|++|++ |.|||+|.+++++++|++..+ ..||+++|....+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCH
Confidence 3455899999999999999999999987767999999998875 699999999999999999665 4589998887765
Q ss_pred cc
Q 027131 138 SE 139 (227)
Q Consensus 138 ~~ 139 (227)
.+
T Consensus 121 ~e 122 (126)
T 2hgm_A 121 EE 122 (126)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 31
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=106.78 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=68.1
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCC-C--CCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEE
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNL-T--PDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLE 133 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I-~--~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~ 133 (227)
.....|+|+||||+++++||++||+.+.. . .++|++.+|+.|++ |.|||+|.+++++++|++..+ ..+|+|+|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456899999999999999999999753 2 58999999998886 699999999999999999654 557999998
Q ss_pred Ecccccc
Q 027131 134 RAEQSEW 140 (227)
Q Consensus 134 ~~~~~~~ 140 (227)
.....++
T Consensus 101 ~a~~~e~ 107 (123)
T 2dha_A 101 RSTAAEV 107 (123)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 8766554
No 32
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=1.2e-12 Score=101.10 Aligned_cols=77 Identities=25% Similarity=0.314 Sum_probs=67.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCccc--CCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYE--ASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~--p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
+..+|+++|||+++|++||.+||+.|... -.+|.|.++.. |++.|.|+|.|.++++|.+|+. +|+..++.+.|.+.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45689999999999999999999999763 25899999988 7999999999999999999999 66677777787765
Q ss_pred e
Q 027131 225 V 225 (227)
Q Consensus 225 v 225 (227)
.
T Consensus 94 ~ 94 (118)
T 2db1_A 94 K 94 (118)
T ss_dssp E
T ss_pred E
Confidence 3
No 33
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.39 E-value=4.9e-13 Score=101.20 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=66.7
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCccc--CCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYE--ASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~--p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
++.+|+++|||+++|++||.+||+.|... ..+|.|.++.. |++.|.|+|.|.++++|.+|+. +|+..++.+.|.+.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 46689999999999999999999998763 36899999988 7999999999999999999999 67777777777664
No 34
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.2e-12 Score=93.98 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=66.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|++||.+||+.| ....|.+..+.. |++.|.|+|.|.++++|.+|+. .|+..++.+.|.++.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAH-GNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEECTT-SCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 45689999999999999999999999 445899999955 6899999999999999999999 888777777887764
No 35
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.38 E-value=1.6e-12 Score=104.38 Aligned_cols=77 Identities=26% Similarity=0.322 Sum_probs=68.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCccc--CCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYE--ASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~--p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
++.+|+++|||+++|++||.+||+.|..+ ..+|.|.+|.. |++.|.|+|.|.++++|.+|+. +|+..++.+.|.+.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45689999999999999999999999864 46899999988 7999999999999999999999 67777777788775
Q ss_pred e
Q 027131 225 V 225 (227)
Q Consensus 225 v 225 (227)
.
T Consensus 121 ~ 121 (136)
T 2hgl_A 121 K 121 (136)
T ss_dssp E
T ss_pred E
Confidence 3
No 36
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=3.1e-12 Score=98.80 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=68.4
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCC--CCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEE
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLT--PDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLER 134 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~--~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~ 134 (227)
.....|+|.||||+++++||++||+.|... ...|++.+|++|++ |.|||+|.+++++++|+++.| ..||+++|..
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 444558999999999999999999999864 48999999998885 699999999999999999555 5689999987
Q ss_pred ccccc
Q 027131 135 AEQSE 139 (227)
Q Consensus 135 ~~~~~ 139 (227)
....+
T Consensus 95 a~~~~ 99 (118)
T 2db1_A 95 SHRTE 99 (118)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 76554
No 37
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.4e-12 Score=96.57 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=64.0
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEccccc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQSE 139 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~~~ 139 (227)
..|+|.||||+++++||++||+.|.+. .|++.+|+.|++ +.|||+|.+++++++|++..+ ..+|+++|......+
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence 457899999999999999999999954 999999998886 689999999999999998554 457888887765433
No 38
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=97.38 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=66.9
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCC--CCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEE
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLT--PDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLER 134 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~--~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~ 134 (227)
.....++|.||||+++++||.+||+.|... ...|++.+|++|++ |.|||+|.+.+++++|+...| ..||+++|..
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE 88 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEE
Confidence 344558999999999999999999999863 58999999998775 699999999999999999544 4578888877
Q ss_pred ccccc
Q 027131 135 AEQSE 139 (227)
Q Consensus 135 ~~~~~ 139 (227)
....+
T Consensus 89 a~~~~ 93 (107)
T 2lmi_A 89 INNED 93 (107)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 75544
No 39
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.32 E-value=6.5e-12 Score=100.77 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCC--CCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEE
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLT--PDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLE 133 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~--~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~ 133 (227)
......|+|.||||+++++||++||+.|... ...|++.+|++|++ |.|||+|.|++++++|++..| ..||+++|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 3444558999999999999999999999874 68999999998886 699999999999999999444 568999998
Q ss_pred Eccccc
Q 027131 134 RAEQSE 139 (227)
Q Consensus 134 ~~~~~~ 139 (227)
.....+
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 776544
No 40
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=6.4e-12 Score=97.13 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++.+|++.|||+++|++||.+||+.|..+.+.+.+..+.. |++.|.|+|.|.++++|.+|+. +|+..++.+.|.+..
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPN-GKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTT-SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCC-CCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4568999999999999999999999988877677766665 6899999999999999999999 677777777887754
No 41
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=9.1e-12 Score=96.26 Aligned_cols=87 Identities=14% Similarity=0.203 Sum_probs=71.9
Q ss_pred CccCCCCCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceE
Q 027131 53 LFLQTPTKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRL 129 (227)
Q Consensus 53 ~~~~sp~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRy 129 (227)
++..+|......|+|.||||+++++||.+||+.|....+-+.+..+..|++ |.|||+|.+++++++|+.+.| ..||.
T Consensus 16 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 16 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp CCCSSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 344455666677999999999999999999999998777777777778875 699999999999999999444 56788
Q ss_pred EEEEEccccc
Q 027131 130 YRLERAEQSE 139 (227)
Q Consensus 130 v~i~~~~~~~ 139 (227)
++|......+
T Consensus 96 i~V~~a~~~~ 105 (124)
T 1wel_A 96 IQVHPITKKG 105 (124)
T ss_dssp BEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 8888776544
No 42
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.30 E-value=9.5e-13 Score=106.11 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=65.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.+.+|+|+|||+++|++||.+||+.|.++ +|.|.+|.. |++.|.|+|.|.++++|.+|+ ++|+..++...|.+.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~Gi~--~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCCCS--EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe--EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 45689999999999999999999999854 899999988 799999999999999999999 667777777676553
No 43
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.6e-11 Score=93.81 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=67.9
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEccc
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQ 137 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~ 137 (227)
...+|+|.||||+++++||.+||+.|.+.+..|++.+|+.|++ +.|||+|.+++++++|++..| ..||.++|.....
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCH
Confidence 3456899999999999999999999988778999999997775 699999999999999999755 5678888877754
Q ss_pred cc
Q 027131 138 SE 139 (227)
Q Consensus 138 ~~ 139 (227)
.+
T Consensus 94 ~~ 95 (114)
T 2cpy_A 94 ED 95 (114)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 44
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.29 E-value=1.3e-11 Score=90.13 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=64.1
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+|++.|||+++|++||.+||..|..+.+ +.++.+...|++.|.|+|+|.++++|.+|+...|+..+...+|.+..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPG-SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTT-CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccc-eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 57999999999999999999999976654 55556555578999999999999999999998777777777877753
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=92.94 Aligned_cols=80 Identities=13% Similarity=0.190 Sum_probs=68.0
Q ss_pred CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 145 PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 145 ~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.++|..|++.|||+++|.+||.++|+.|.-+ .+|.+..|...|++.|-|+|.|.++++|.+|+...|+..++.++|.+.
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEV-ESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4678889999999999999999999999422 368888887667899999999999999999999877777777787765
Q ss_pred e
Q 027131 225 V 225 (227)
Q Consensus 225 v 225 (227)
.
T Consensus 95 ~ 95 (99)
T 4fxv_A 95 Y 95 (99)
T ss_dssp E
T ss_pred E
Confidence 3
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.28 E-value=3e-11 Score=89.38 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=68.0
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCc-------eEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASS-------ISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~-------I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
....+|++.|||+++|++||.+||+.|.-+.+. |.+..+...|++.|-|+|.|.+.++|.+|+...|+.-++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 446789999999999999999999999766542 8898886667899999999999999999999766666666
Q ss_pred ceeEEEe
Q 027131 219 NQVSVRV 225 (227)
Q Consensus 219 ~~v~lrv 225 (227)
+.|.++.
T Consensus 91 ~~l~V~~ 97 (99)
T 2la6_A 91 NPIKVSF 97 (99)
T ss_dssp SBCEEEE
T ss_pred cEEEEEe
Confidence 6888765
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.28 E-value=2.5e-12 Score=95.12 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=62.7
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCc-ccCCceeEEE
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRG-FCLNNQVSVR 224 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~r-f~gn~~v~lr 224 (227)
.+|+|+|||+++|++||.++|+.|.....+|.+..|...|++.|-|+|.|.++++|.+|+..++.+ .++.++|.+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~ 78 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMH 78 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEE
Confidence 379999999999999999999977533457888888776789999999999999999999876443 4555577765
No 48
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=3.3e-11 Score=87.72 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEcc
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAE 136 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~ 136 (227)
.....+++.|||++++++||++||+.| ....|++..+..|++ +.|||+|.+.+++++|+++.| ..||.++|....
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 344558999999999999999999999 667899999987775 699999999999999999434 567888886653
No 49
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=2.7e-11 Score=89.08 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=64.6
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||++++++||.+||..|..+.+ +.++.+...|++.|.|+|.|.++++|.+|+...|+..++.+.|.++.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPG-SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTT-TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccc-eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 357999999999999999999999987654 44555544468999999999999999999988887777777888765
No 50
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=4e-11 Score=88.80 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=65.0
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
....+|++.|||+++|++||.++|+++ ..|.++.+...|++.|-|+|.|.++++|.+|+...|+.-+....|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC----SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC----eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999999999999999999988 2688888865578999999999999999999997777666666777764
No 51
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=2.8e-11 Score=90.14 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||++++++||.+||+.|.|. .|.+..+...|++.|-|+|.|.++++|.+|+ ..|+..+..+.|.+..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~gi~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLSIR--SVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSCEE--EEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCce--EEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 35689999999999999999999999744 6889988766789999999999999999999 6666666666777754
No 52
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.4e-11 Score=90.91 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=68.2
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCC-------ceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEAS-------SISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~-------~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
.+..+|++.|||+++|++||.++|+.|.-+.+ .|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 34578999999999999999999999977754 68888885557899999999999999999999766666666
Q ss_pred ceeEEEe
Q 027131 219 NQVSVRV 225 (227)
Q Consensus 219 ~~v~lrv 225 (227)
..|.++.
T Consensus 93 ~~l~V~~ 99 (113)
T 2cpe_A 93 SKLKVSL 99 (113)
T ss_dssp EECEEEC
T ss_pred CEEEEEE
Confidence 6877764
No 53
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4e-11 Score=87.71 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=66.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+.+|++.|||+++|++||.++|+.|.-+.+-+.+..+...|++.|-|+|.|.++++|.+|+...|+..+....|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4568999999999999999999999975543328888855578999999999999999999997777777777887764
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.22 E-value=4.2e-11 Score=85.93 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=66.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||++++.+||.++|+.|.-+ .+|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++.+.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35689999999999999999999998533 4688888865578999999999999999999998777777777887764
No 55
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.21 E-value=2e-11 Score=93.56 Aligned_cols=98 Identities=11% Similarity=-0.007 Sum_probs=58.9
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEccccccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERAEQSEWD 141 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~~~~~~~ 141 (227)
++|.|||++++++||.++|+.|. ....|++..|+++..|-|||+|.+.+++++|++. .| ..||.+.|.........
T Consensus 8 lfV~nLp~~~te~~L~~~F~~~G-~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~ 86 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 86 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-
T ss_pred EEECCCCCCCCHHHHHHHHhccC-CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccc
Confidence 58899999999999999999886 3467888888765457899999999999999984 34 45777777654322211
Q ss_pred cc----cCCCCcEEEEeccCCCCCHH
Q 027131 142 IV----MPYNGKTVLLQNVPRIAVAE 163 (227)
Q Consensus 142 ~~----~~~~g~~V~LrgLPf~~tke 163 (227)
.. .......|+++|||+++|++
T Consensus 87 ~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 87 EAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp --------------------------
T ss_pred ccccccccCCCCceEeCCCCCCcccc
Confidence 00 01112359999999999976
No 56
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.21 E-value=3.6e-11 Score=86.64 Aligned_cols=77 Identities=5% Similarity=0.082 Sum_probs=63.8
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.+..+|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+..++.. +....|.++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~-~~g~~i~v~ 85 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEV-VDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHR-LDGRVIDPK 85 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCE-EEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEE-ETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCE-ECCEEEEEE
Confidence 345689999999999999999999999532 36888888766789999999999999999999886665 444477765
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.21 E-value=6.1e-11 Score=84.33 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=65.2
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.|++.|||++++.+||.++|+.|.-+ .+|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++.++|.++.
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSY-LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTE-EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 69999999999999999999999532 4678888866678999999999999999999998887777777887764
No 58
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=5.4e-11 Score=86.65 Aligned_cols=77 Identities=17% Similarity=0.075 Sum_probs=66.6
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPI-ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCE-EEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCe-eEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4689999999999999999999999533 3688888877678999999999999999999998888777777887764
No 59
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.18 E-value=4.4e-11 Score=87.37 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=62.8
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcc-cCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEY-EASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i-~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+|++.|||+++|.+||.++|+.|.. .-.+|.+..+...|++.|-|+|.|.+.++|.+|+...|+.-+..++|.++.
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~ 79 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 79 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEE
Confidence 6899999999999999999999963 345899999876679999999999999999999987666555556777653
No 60
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.18 E-value=4.7e-11 Score=85.27 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=66.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++.++|.++.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCE-EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCE-EEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999998522 3677777766678999999999999999999988777777777887764
No 61
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-10 Score=85.14 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=66.6
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+..+|++.|||+++|.+||.++|+.|.-+ ..|.+..+.. |++.|-|+|.|.+.++|.+|+...|+..++...|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTV-KDLRLVTNRA-GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEEECCC-CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999633 4688888874 68999999999999999999988777777777888764
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.17 E-value=6.8e-11 Score=85.15 Aligned_cols=76 Identities=16% Similarity=0.280 Sum_probs=63.6
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.++|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+ ..|+..+....|.++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSV-NRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCE-EEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEE
Confidence 4689999999999999999999999533 36888888655789999999999999999999 6666666666887753
No 63
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-10 Score=84.40 Aligned_cols=78 Identities=10% Similarity=0.019 Sum_probs=66.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||++++++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+..++|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKI-DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34689999999999999999999999533 3577777766578999999999999999999998777777777888765
No 64
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=6.3e-11 Score=83.16 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=63.5
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+|++.|||++++.+||.++|+.+.-+ ..|.+..+...|++.|-|+|.|.++++|.+|+...| ..+...+|.++.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEV-KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCC-CCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 58999999999999999999999644 468888887667899999999999999999999999 444445887764
No 65
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=5.6e-11 Score=88.63 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=63.3
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCC-CCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSL-PDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~-g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||+++|++||.+||..|.| ..|.+..+... |++.|-|+|.|.+.++|.+|+ ..|+..+....|.++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~Gi--~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLNI--SAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSCE--EEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCCc--eEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 468999999999999999999999973 46777777654 688999999999999999999 6666666666887764
No 66
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.6e-10 Score=85.87 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=66.5
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+..+|++.|||++++++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSI-SRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCE-EEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 345689999999999999999999999533 3588888765578999999999999999999998777777777877764
No 67
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.16 E-value=1e-10 Score=87.33 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=66.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||+++|.+||.++|+.|.-+ ..|.+..+.. |++.|.|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVHYDRS-GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35689999999999999999999999533 4788888885 68999999999999999999998777777777888765
No 68
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.15 E-value=7.3e-11 Score=88.91 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=64.8
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCc-ccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc----cCCceeEE
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCE-YEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF----CLNNQVSV 223 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~-i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf----~gn~~v~l 223 (227)
.+|+++|||+++|+|||.++|+.|. +...+|.+..|...|++.|-|+|.|.++++|.+|+...|+.. +...+|.+
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 4899999999999999999999985 345689999988778999999999999999999999888752 34456666
Q ss_pred E
Q 027131 224 R 224 (227)
Q Consensus 224 r 224 (227)
.
T Consensus 90 ~ 90 (95)
T 2lkz_A 90 D 90 (95)
T ss_dssp E
T ss_pred E
Confidence 4
No 69
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=9.5e-11 Score=85.35 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=65.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.++++|.+|+...|+..+..++|.++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKV-VKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCE-EEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45689999999999999999999999533 3577777766678899999999999999999988777777777887764
No 70
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.5e-10 Score=86.22 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=66.8
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.++.+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++...|.++.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEI-KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCe-EEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 456789999999999999999999999533 3678888876678999999999999999999998777777777887764
No 71
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1e-10 Score=86.53 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=66.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+..+.|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCC-CCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCE-EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45689999999999999999999999543 3588888766578999999999999999999988787777777888764
No 72
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.15 E-value=1.2e-10 Score=88.09 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=67.1
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+..+|+|.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.++++|.+|+...|+..++.+.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 346689999999999999999999999533 3688888865578999999999999999999998777777777887764
No 73
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.14 E-value=8.7e-11 Score=85.71 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=65.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||++++.+||.++|+.|.-+ ..|.+..+.. |++.|-|+|.|.+.++|.+|+...|+..+..+.|.++.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i-~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPL-TKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 35689999999999999999999999533 2588888887 68999999999999999999997777767776887764
No 74
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.7e-10 Score=85.46 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=64.9
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++...|.++.
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPV-VSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCC-SEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCe-eEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 579999999999999999999999533 4688888865578999999999999999999987777666666887764
No 75
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.1e-10 Score=86.31 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=65.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.++++|.+|+...|+..+...+|.+..
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQI-SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCC-CEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45689999999999999999999998533 4688888766678999999999999999999987777766667887764
No 76
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.9e-10 Score=85.15 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=63.4
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|.+||.++|+.| ..|.+..+.. |++.|-|+|.|.++++|.+|+...|+..+....|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKA----TFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSC----SEEECCBCSS-SCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC----CEEEEEECCC-CCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 45689999999999999999999998 3577777755 68999999999999999999998777777676877764
No 77
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.13 E-value=1.2e-10 Score=85.80 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=65.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPL-SELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999533 3577777764578999999999999999999988887777777887764
No 78
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.12 E-value=2.9e-10 Score=86.39 Aligned_cols=78 Identities=12% Similarity=0.044 Sum_probs=66.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+...|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++.+.|.++.
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCE-EEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999533 3688888866678999999999999999999997777777777888764
No 79
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.12 E-value=2.2e-11 Score=98.15 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=63.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEccccc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQSE 139 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~~~ 139 (227)
..|+|.||||+++++||++||+.|.|. .|++.+|++|++ +.|||+|.+++|+++|+...+ ..+|+++|......+
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~Gi~--~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCCCS--EEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe--EEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCC
Confidence 347999999999999999999999953 899999998775 699999999999999997544 567888887775544
No 80
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.11 E-value=3.5e-10 Score=89.64 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=83.3
Q ss_pred cceEEEEeCCHHHHHHHHHHh--C--ccceEEEEEEccccc------------cccccCCCCcEEEEeccCCCCCHHHHH
Q 027131 103 PFAMMMQFPSFSAYDNAFRLI--G--RKGRLYRLERAEQSE------------WDIVMPYNGKTVLLQNVPRIAVAEDVE 166 (227)
Q Consensus 103 ~~eAfV~F~S~~d~~~AL~~l--g--~~gRyv~i~~~~~~~------------~~~~~~~~g~~V~LrgLPf~~tkeEI~ 166 (227)
-|.++|+|.+.+++++|++.+ | ..| -+.+....... ..........+|++.|||+++|.+||.
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 91 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELE 91 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHH
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 478999999999999999733 2 344 44444332211 001112235689999999999999999
Q ss_pred HccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 167 RFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 167 ~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++|+.|.-+ .+|.+..+ +.|-|+|.|.+.++|.+|+...|+..++.++|.++.
T Consensus 92 ~~F~~~G~i-~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 92 RAFGYYGPL-RSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp HHHHHHSCE-EEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred HHHHhhCCE-EEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 999988422 24555444 457899999999999999997777766677888764
No 81
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.11 E-value=4.1e-10 Score=83.72 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=64.4
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC---ceeEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN---NQVSV 223 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn---~~v~l 223 (227)
...+|++.|||++++.+||.++|+.|.-+ ..|.+..+.. |++.|-|+|.|.+.++|.+|+...|+..+.. ..|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVI-DECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECSS-SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECCC-CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 35689999999999999999999999533 3688888876 6899999999999999999999777765544 67777
Q ss_pred Ee
Q 027131 224 RV 225 (227)
Q Consensus 224 rv 225 (227)
+.
T Consensus 92 ~~ 93 (105)
T 2dnh_A 92 KF 93 (105)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 82
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=4.2e-10 Score=83.54 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=65.3
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+..+|++.|||+++|.+||.++|+.|.-+ ..|.+..+ . |++.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~-~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTI-TSAKVMME-G-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCE-EEEEEEEC-S-SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEcC-C-CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456789999999999999999999999533 35788888 4 58999999999999999999998777767777888764
No 83
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.11 E-value=2.6e-10 Score=86.40 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=66.4
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNV-VSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCC-SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34689999999999999999999998533 4688888875578999999999999999999988777777777877764
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.11 E-value=9.7e-11 Score=82.15 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=59.4
Q ss_pred EEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 151 VLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 151 V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
|++.|||+++|++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.++++|.+|+..++..+.| ++|.++
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g-~~l~v~ 73 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKV-DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN-KMVECK 73 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCC-SEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSS-CCCEEE
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCE-EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECC-EEEEEE
Confidence 7899999999999999999999543 36777777655789999999999999999999855555544 477765
No 85
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.3e-10 Score=85.41 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=65.2
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||++++.+||.++|..|.-+ ..|.+..+.. |++.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVV-VRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4689999999999999999999999533 3578888876 68999999999999999999998777777777887764
No 86
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.10 E-value=5.9e-11 Score=88.46 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=61.0
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeec-CCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQ-SLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~-~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
....+|++.|||++++++||.+||+.|. ..+|.+..+. ..|++.|-|+|.|.+.++|.+|+ ..|+..++...|.++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 3467899999999999999999999997 2367777775 34689999999999999999999 555555555577665
Q ss_pred e
Q 027131 225 V 225 (227)
Q Consensus 225 v 225 (227)
.
T Consensus 94 ~ 94 (100)
T 2j76_E 94 V 94 (100)
T ss_dssp E
T ss_pred e
Confidence 3
No 87
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.10 E-value=2.7e-11 Score=84.87 Aligned_cols=74 Identities=11% Similarity=0.237 Sum_probs=61.8
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+|++.|||+++|++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+..++..+.|. +|.+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~-~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLS-KCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCC-SEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTB-CCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCE-EEEEEE
Confidence 47899999999999999999998643 467777776667899999999999999999999866665555 777764
No 88
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.8e-10 Score=84.85 Aligned_cols=73 Identities=8% Similarity=0.040 Sum_probs=62.6
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCce
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQ 220 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~ 220 (227)
..+|++.|||++++++||.++|+.|.-+..+|.+..+...|++.|-|+|.|.++++|.+|+...|+..+..+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 9 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 4689999999999999999999999755447889988766789999999999999999999976666555556
No 89
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=1.9e-10 Score=84.58 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=64.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecC---CCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQS---LPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~---~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
+..+|++.|||+++|++||.++|+.|.-+ ..|.+..+.. .|++.|-|+|.|.+.++|.+|+...|+..+....|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAI-KSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45689999999999999999999999533 3677777654 3478899999999999999999987777777778777
Q ss_pred Ee
Q 027131 224 RV 225 (227)
Q Consensus 224 rv 225 (227)
+.
T Consensus 83 ~~ 84 (98)
T 2cpf_A 83 RI 84 (98)
T ss_dssp EC
T ss_pred EE
Confidence 64
No 90
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=1.7e-10 Score=86.40 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=65.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc------CcccCCce
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN------RGFCLNNQ 220 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n------~rf~gn~~ 220 (227)
...+|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...| +..+....
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDL-KYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 35689999999999999999999999533 357777776657899999999999999999999988 66666767
Q ss_pred eEEEe
Q 027131 221 VSVRV 225 (227)
Q Consensus 221 v~lrv 225 (227)
|.++.
T Consensus 93 l~v~~ 97 (111)
T 1x4h_A 93 LKVDL 97 (111)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77764
No 91
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=1.4e-10 Score=86.16 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=64.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.++++|.+|+...|+..+....|.++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRV-GDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45689999999999999999999999533 2566777766568999999999999999999997777666667887764
No 92
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.7e-10 Score=87.72 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=64.4
Q ss_pred CCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 145 PYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 145 ~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
..+.++|++.|||+++|.+||.+||+.|.-+ .+|.|..+.. |++.|-|+|.|.++++|.+|+..++..+.|. +|.+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v-~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr-~l~V~ 84 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQV-LNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKET-DLLIL 84 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCE-EEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTT-TCEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCE-EEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCE-EEEEE
Confidence 3445789999999999999999999999633 4688888887 7899999999999999999999655566554 77664
No 93
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.09 E-value=2e-10 Score=84.42 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=63.7
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++.+.|.++.
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPV-INLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 579999999999999999999999532 2466777765578999999999999999999988777766667877764
No 94
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=4.3e-10 Score=82.93 Aligned_cols=77 Identities=6% Similarity=0.160 Sum_probs=62.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||++++++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+.. |+..+....|.++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVV-TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKR 85 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCE-EEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHH-CCCBSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHh-CCCEECCeEEEEEE
Confidence 35689999999999999999999999533 3577777765578999999999999999999995 55455555777764
No 95
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.07 E-value=5.3e-10 Score=85.93 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=66.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|++||.++|+.|.-+ .+|.+..+.. |++.|-|+|.|.+.++|.+|+...|+..+..+.|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~-g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPI-SEVLLIKDRT-SKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCC-SEEEEECSTT-TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEECCC-CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34689999999999999999999999644 4688888874 68999999999999999999998777777777887764
No 96
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.07 E-value=2.1e-10 Score=82.19 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=63.0
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCC-CcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLP-DSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g-~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||+++|.+||.++|+.|.-+ ..|.+..+...+ ++.|-|+|.|.+.++|.+|+...|+..++.+.|.+..
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKI-KMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4589999999999999999999999533 357777765433 3889999999999999999998777777777887764
No 97
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.07 E-value=4e-10 Score=91.12 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=66.1
Q ss_pred EEeCCHHHHHHHHHHh-----CccceEEEEEEcccc---ccc-------------cccCCCCcEEEEeccCCCCCHHHHH
Q 027131 108 MQFPSFSAYDNAFRLI-----GRKGRLYRLERAEQS---EWD-------------IVMPYNGKTVLLQNVPRIAVAEDVE 166 (227)
Q Consensus 108 V~F~S~~d~~~AL~~l-----g~~gRyv~i~~~~~~---~~~-------------~~~~~~g~~V~LrgLPf~~tkeEI~ 166 (227)
.+|..++|.+.|...+ +.+||........+. .|+ +.....+.+|+|.|||+++|.+||.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788888888887733 244554433221110 111 1122345689999999999999999
Q ss_pred HccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 167 RFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 167 ~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++|+.|.-+ ..|.|..+...|.+.|-|+|.|.+.++|.+|+...|+..++...|.+..
T Consensus 91 ~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 91 EKFCDYGEI-KNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp HHHGGGSCE-EEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHhhcCCCE-EEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 999999533 3577877765578999999999999999999998777766666777653
No 98
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.06 E-value=1.8e-10 Score=89.25 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=65.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+...|++.|||+++|++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++.+.|.++.
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCE-EEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35689999999999999999999999533 2466767755578999999999999999999988887777777887763
No 99
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.06 E-value=4.2e-10 Score=86.14 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=63.1
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||+++|++||.+||+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+ +.|+..++.+.|.+..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSI-NRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCE-EEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 4689999999999999999999999533 36888888655789999999999999999999 5666666666777653
No 100
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.06 E-value=3.3e-10 Score=85.08 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.++.+|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++...|.+..
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEI-KNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 456789999999999999999999999533 3566767765578999999999999999999997777766666777653
No 101
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=3e-10 Score=84.42 Aligned_cols=78 Identities=10% Similarity=-0.027 Sum_probs=65.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPV-VNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45689999999999999999999999532 3566777765578999999999999999999998777777777888764
No 102
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.06 E-value=3.9e-10 Score=83.93 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=63.4
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEee-cCCCCcceeEEEEcCCHHHHHHHHHHh-cCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLR-QSLPDSIKWATVRFPSQTQAMDAFIRK-NRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d-~~~g~ptGeA~V~F~S~e~A~~Al~~~-n~rf~gn~~v~lr 224 (227)
...+|++.|||+++|.+||.++|+.|.-+ ..|.+..+ ...|++.|-|+|.|.+.++|.+|+... |+..+....|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGEL-KTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCe-EEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 45689999999999999999999999522 24666666 344689999999999999999999987 6666666688776
Q ss_pred e
Q 027131 225 V 225 (227)
Q Consensus 225 v 225 (227)
.
T Consensus 93 ~ 93 (107)
T 2cph_A 93 W 93 (107)
T ss_dssp E
T ss_pred e
Confidence 4
No 103
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.06 E-value=2.3e-10 Score=86.88 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=65.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||++++++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++.+.|.++.
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNV-ISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEE-EEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35689999999999999999999999533 2577777755578999999999999999999998888777777877764
No 104
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=2.8e-10 Score=86.14 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=62.6
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+ ..|+..++.+.|.++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKV-RDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCE-eEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3589999999999999999999999533 35777777765688999999999999999999 6666666666777653
No 105
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.05 E-value=5.6e-10 Score=80.90 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=61.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||++++.+||.++|+.|.-+ ..|.+..+ . |++.|-|+|.|.+.++|.+|+...|+..+..++|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~~~i~~~-~-g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHV-LYADIKME-N-GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCE-EEEEEEES-S-SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEcc-C-CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999533 25677664 3 57899999999999999999997666666666776654
No 106
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.05 E-value=1.9e-09 Score=80.15 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=60.9
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
.....++|.|||++++++||.++|+.|. ...|++..++ .|++ +.|||+|.+.+++++|+.+.| ..||.++|...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC--ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 3445589999999999999999999995 6678999988 5665 689999999999999996445 45677777655
No 107
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=2.9e-10 Score=86.32 Aligned_cols=77 Identities=10% Similarity=0.147 Sum_probs=64.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||+++|++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|. .+....|.++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDI-EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCE-EEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCe-eEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45689999999999999999999999432 3577777765568999999999999999999999998 55556887764
No 108
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.04 E-value=4.9e-10 Score=86.04 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=66.0
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.++.+|+|.|||+++|.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+....|.|..
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEI-KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 456789999999999999999999998533 3577777765578999999999999999999987777777777887754
No 109
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.3e-10 Score=84.05 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=64.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCC-CcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc-cCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSG-CEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF-CLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG-~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf-~gn~~v~lr 224 (227)
...+|++.|||+++|.+||.++|+. |.-+ ..|.+..+.. |++.|-|+|.|.+.++|.+|+...|+.. +....|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v-~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSC-RGGKVVLDQT-GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTE-EEEEEEECTT-CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCe-EEEEEEECCC-CCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 3468999999999999999999998 7633 4688888884 6899999999999999999999888766 666676654
No 110
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.04 E-value=3.6e-10 Score=88.85 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=66.4
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||++++++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPI-ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCE-EEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35689999999999999999999999533 3678888866678999999999999999999998777777777887753
No 111
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.04 E-value=8.1e-10 Score=84.90 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=65.5
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+.+|++.|||++++++||.++|+.|.-+ ..|.+..+.. |++.|-|+|.|.+.++|.+|+...|+..+..+.|.++.
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYDRS-GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCC-SEEEEECCSS-SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEECCC-CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4589999999999999999999999533 4788888874 68999999999999999999997777777777887764
No 112
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=8.9e-10 Score=81.77 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|.+||.++|+.|.-+ ..|.+..+.+ .+.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCE-EEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45689999999999999999999999533 2577777765 3789999999999999999998777777777887764
No 113
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.8e-09 Score=80.42 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=60.2
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCC--CCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRN--YMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~--g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
....|+|.|||++++++||.+||+.+. ...|++..++. |++ +-|||+|.+.+++++|+.+.| ..||.++|...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 335589999999999999999999997 56788888873 665 689999999999999996445 45677777655
Q ss_pred c
Q 027131 136 E 136 (227)
Q Consensus 136 ~ 136 (227)
.
T Consensus 92 ~ 92 (104)
T 1wi8_A 92 D 92 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 114
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.03 E-value=1.1e-09 Score=83.89 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=66.4
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...|++.|||++++++|+.++|+-|--+ .+|.+.+|...|++.|-|+|.|.+.++|.+|+...|+.-+..+.|.+..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i-~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEV-EEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCe-eEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4589999999999999999999999643 3688888887679999999999999999999998777766666887754
No 115
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.02 E-value=3.5e-10 Score=85.92 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=63.0
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.++.+|++.|||+++|++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+..++..+.| ..|.++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g-~~l~V~~ 100 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEV-KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS-KTIDPKV 100 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETT-EEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCe-EEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCC-EEEEEEE
Confidence 345689999999999999999999999533 35777777665789999999999999999999998754444 4777764
No 116
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=7.9e-10 Score=83.85 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=64.1
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||+++|++||.++|..|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+.. |+..+....|.++.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKL-TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCC-SEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 3589999999999999999999999533 4688888866678999999999999999999999 65556666777653
No 117
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=1.9e-09 Score=81.36 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=63.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCccc--------CC
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFC--------LN 218 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~--------gn 218 (227)
+...|++.|||+++|.+||.++|+.|.-+ ..|.+..+.. |++.|-|+|.|.+.++|.+|+...|+..+ ..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQV-ISTRILRDSS-GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCE-EEEEEEECSS-SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEECCC-CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45689999999999999999999999422 3588888874 68999999999999999999998888777 34
Q ss_pred ceeEEEe
Q 027131 219 NQVSVRV 225 (227)
Q Consensus 219 ~~v~lrv 225 (227)
.++.++.
T Consensus 102 ~~l~v~~ 108 (114)
T 1x5o_A 102 EPLLCKF 108 (114)
T ss_dssp SCBEEEE
T ss_pred CceeEEc
Confidence 4566553
No 118
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.02 E-value=5.8e-10 Score=86.94 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=66.3
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.++|++.|||++++++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..++...|.+..
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPI-ESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCE-EEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4689999999999999999999998533 3588888876678999999999999999999998777777777887764
No 119
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.02 E-value=9.1e-10 Score=87.77 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=66.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|+|.|||+++|.+||.++|+.|--+ ..|.|..+...+++.|-|+|.|.+.++|.+|+...|+..+..+.|.+..
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDI-KKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45689999999999999999999999433 2688888876678999999999999999999998777766777877754
No 120
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.02 E-value=4.8e-09 Score=76.93 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=58.2
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEE
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLER 134 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~ 134 (227)
.....+++.|||++++++||++||+.+....+ +++..++ .|++ +.|||+|.+.+++++|++.+ | ..||.++|..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPG-SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTT-TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccc-eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 33455899999999999999999999986554 4444444 6775 69999999999999999744 4 4577777765
Q ss_pred c
Q 027131 135 A 135 (227)
Q Consensus 135 ~ 135 (227)
.
T Consensus 92 a 92 (98)
T 2cqp_A 92 G 92 (98)
T ss_dssp S
T ss_pred c
Confidence 4
No 121
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.01 E-value=3.3e-10 Score=83.59 Aligned_cols=71 Identities=8% Similarity=0.083 Sum_probs=59.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh--C--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI--G--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l--g--~~gRyv~i~~~ 135 (227)
|.|+|||++++++||+++|+.+.....+|++..|+ .|.+ |-|||+|.|.+++++|++.+ + ..||.++|.-.
T Consensus 4 i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 4 VMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp EEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999887666788898888 5665 68999999999999999843 2 45788887644
No 122
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.01 E-value=1e-09 Score=85.45 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=64.6
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||++++++||.++|+.|.-+ .+|.+..+...|++.|-|+|+|.++++|.+|+...|+..++.++|.+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEI-ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCe-EEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 3579999999999999999999999633 3678888774578999999999999999999997777777766777653
No 123
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.1e-09 Score=81.25 Aligned_cols=76 Identities=9% Similarity=0.149 Sum_probs=61.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||++++++||.++|..|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+.. +. -+....|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~-~~~g~~l~v~~ 89 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEV-LMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RH-MIDGRWCDCKL 89 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCE-EEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CE-EETTEEEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCe-EEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CC-eeCCeEEEEEe
Confidence 35679999999999999999999999533 2578888866578999999999999999999984 33 34444777654
No 124
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.00 E-value=6.4e-10 Score=82.76 Aligned_cols=79 Identities=10% Similarity=0.118 Sum_probs=64.8
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCccc---CCceeE
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFC---LNNQVS 222 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~---gn~~v~ 222 (227)
.+..+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+..+ ....|.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKI-YELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCC-CEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 345689999999999999999999988522 3678888766678999999999999999999997777654 556777
Q ss_pred EEe
Q 027131 223 VRV 225 (227)
Q Consensus 223 lrv 225 (227)
++.
T Consensus 90 v~~ 92 (106)
T 2dgp_A 90 VKP 92 (106)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 125
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.00 E-value=3.9e-10 Score=89.11 Aligned_cols=115 Identities=12% Similarity=0.085 Sum_probs=67.4
Q ss_pred eEEEEeCCHHHHHHHHHHh-Cc--cceEEEEEEccccccccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEE
Q 027131 105 AMMMQFPSFSAYDNAFRLI-GR--KGRLYRLERAEQSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISF 181 (227)
Q Consensus 105 eAfV~F~S~~d~~~AL~~l-g~--~gRyv~i~~~~~~~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l 181 (227)
-+|.+++.+..+..|+..+ |. .|+- ..+... .+....+..+|++.|||+++|.+||.++|+.|.-+ ..|.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~----~~~~~~-~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i 79 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG----SMSYGR-PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRV-GDVYI 79 (135)
T ss_dssp ---------------------------------CCSCC-SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCC-SEEEC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC----CCCcCC-CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEE
Confidence 4677777777777787744 21 1110 010000 01112335679999999999999999999999633 46777
Q ss_pred EeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 182 MLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 182 ~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+...|++.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 77765578999999999999999999998777777777888764
No 126
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=3.4e-10 Score=84.34 Aligned_cols=76 Identities=8% Similarity=0.063 Sum_probs=62.4
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
+..+|++.|||++++++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+.. |+..+....|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEV-VDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCE-EEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 45689999999999999999999999533 3578888866578999999999999999999999 5555555566554
No 127
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.99 E-value=7.6e-10 Score=89.98 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=66.2
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcc-cCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEY-EASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i-~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||+++|.+||.++|+.|.. .-.+|.+..|...|++.|-|+|.|.+.++|.+|+...|+.-++...|.++.
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 358999999999999999999998862 334788888866679999999999999999999999777777777887764
No 128
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.99 E-value=3e-10 Score=82.25 Aligned_cols=75 Identities=11% Similarity=0.188 Sum_probs=63.8
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++|++.|||++++.+||.++|+.|.-+ .+|.+..+...|++.|-|+|.|.+.+ |.+|+...|+..++.+.|.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKV-FNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCC-SEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCE-EEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 469999999999999999999998533 36888887766789999999999999 9999998888777777877653
No 129
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=5.5e-10 Score=80.03 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=58.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
...+|++.|||++++.+||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+...|+.-+..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKI-VSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCE-EEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 45689999999999999999999999532 357777776557899999999999999999999666554443
No 130
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.98 E-value=2.3e-09 Score=77.88 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=59.4
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+...|++.|||++++++||.++|+.|+ -..+.+. ++.|-|+|.|.++++|.+|+...|+.-++.++|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~~--v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDYD--LKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSSC--CCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCC--eEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 345799999999999999999999994 3456662 5678999999999999999998888777777887754
No 131
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.98 E-value=9.1e-10 Score=85.69 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=63.7
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++|++.|||+++|++||.++|+.|.-+ .+|.+..+.. |++.|-|+|+|.+.++|.+|+...|+..+..+.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPI-ANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW 75 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCE-EEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCe-EEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEE
Confidence 479999999999999999999988533 3688888877 57899999999999999999988888777777887754
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.97 E-value=7.5e-10 Score=81.01 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=60.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||+++|.+||.++|+.|. .|.+. ... |++.|-|+|.|.+.++|.+|+...|+.-++...|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g----~v~~~-~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDAL----EIRLV-SQD-GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEE----EECCE-EET-TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCC----cEEEe-CCC-CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999999983 45444 444 58899999999999999999997777666666777754
No 133
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.97 E-value=4.9e-10 Score=87.38 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=65.1
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCc-ccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCc----ccCCceeE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCE-YEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRG----FCLNNQVS 222 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~-i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~r----f~gn~~v~ 222 (227)
...|++.|||+++|++||.++|..|. |...+|.|.+|...|++.|-|||.|.+. +|.+|+...|+. -+....|.
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~ 101 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTIN 101 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEE
Confidence 45899999999999999999999994 4444599999886678999999999999 999999999987 55555776
Q ss_pred EEe
Q 027131 223 VRV 225 (227)
Q Consensus 223 lrv 225 (227)
++.
T Consensus 102 V~~ 104 (131)
T 2m2b_A 102 VEF 104 (131)
T ss_dssp CEE
T ss_pred EEE
Confidence 653
No 134
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.96 E-value=6.9e-10 Score=82.91 Aligned_cols=77 Identities=9% Similarity=0.141 Sum_probs=64.5
Q ss_pred CcEEEEeccCC------CCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc-CcccCCce
Q 027131 148 GKTVLLQNVPR------IAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN-RGFCLNNQ 220 (227)
Q Consensus 148 g~~V~LrgLPf------~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n-~rf~gn~~ 220 (227)
+.+|++.|||+ ++++++|.++|+.|.-+ .+|.++++...|++.|-|+|.|.+.++|.+|+...| ..+.|+++
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i-~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKV-VNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCE-EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCE-eEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 46899999999 99999999999999633 368888888767899999999999999999997555 55555578
Q ss_pred eEEEe
Q 027131 221 VSVRV 225 (227)
Q Consensus 221 v~lrv 225 (227)
|.+..
T Consensus 85 l~V~~ 89 (100)
T 3ns6_A 85 LFLYT 89 (100)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 88764
No 135
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.95 E-value=4.4e-09 Score=77.59 Aligned_cols=71 Identities=8% Similarity=0.041 Sum_probs=57.3
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCC-------CeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPD-------DLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLY 130 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d-------~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv 130 (227)
..+++.|||++++++||.++|+.+.-..+ .|++..|+ .|+. |.|||+|.+.+++++|++. .| ..||.+
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 93 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 93 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 44789999999999999999999975433 19999997 5775 6899999999999999984 44 446655
Q ss_pred EEE
Q 027131 131 RLE 133 (227)
Q Consensus 131 ~i~ 133 (227)
+|.
T Consensus 94 ~V~ 96 (99)
T 2la6_A 94 KVS 96 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 136
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.95 E-value=1.3e-09 Score=85.31 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=63.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
..+|++.|||++++++||.++|+.|.-+ .+|.+..+...|++.|-|+|+|.++++|.+|+...++..++.+.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPI-NTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 78 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEE
Confidence 4689999999999999999999998532 356666676557899999999999999999999777777777777765
No 137
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=2.2e-09 Score=81.31 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=64.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|++||.++|+.|.-+ ..|.+..+.+ .+.|-|+|.|.+.++|.+|+...|+..++.+.|.++.
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCC-SCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCE-EEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999999999999999999999633 3588887764 4789999999999999999998777777776887764
No 138
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=8.3e-09 Score=77.66 Aligned_cols=73 Identities=11% Similarity=0.159 Sum_probs=59.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCC-------CeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPD-------DLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLY 130 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d-------~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv 130 (227)
..|+|.|||++++++||.++|+.+.-... .|++..|+ .|++ +.|||+|.+.+++++|++. .| ..||.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (113)
T 2cpe_A 16 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKL 95 (113)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEE
Confidence 45789999999999999999999976543 79999996 6775 6999999999999999994 44 456766
Q ss_pred EEEEc
Q 027131 131 RLERA 135 (227)
Q Consensus 131 ~i~~~ 135 (227)
+|...
T Consensus 96 ~V~~a 100 (113)
T 2cpe_A 96 KVSLA 100 (113)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 66544
No 139
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.8e-09 Score=78.55 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=59.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||+++|.+||.++|+.|.-+. +.+.++ ++.|-|+|.|.+.++|.+|+...|+.-+..+.|.++.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~--~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP--LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC--SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE--EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45899999999999999999999997664 566654 5668999999999999999988666666666887764
No 140
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.93 E-value=2.1e-09 Score=86.40 Aligned_cols=76 Identities=8% Similarity=0.037 Sum_probs=62.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
+..+|++.|||+++|++||.++|+.|.-+ ..|.+..+...|++.|-|+|.|.+.++|.+|+..++..+.|. .|.+.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~-~l~v~ 87 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTL-TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGR-VVEPK 87 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTE-ECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCE-Eeeee
Confidence 35689999999999999999999999533 367888887667899999999999999999999865555544 66654
No 141
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.93 E-value=7.4e-10 Score=82.43 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=56.9
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC--CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR--NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr--~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
..-+++.|||++++++||.+||+.+. ...|++..++ .|++ |.|||+|.+.+++++|+.+.| ..||.++|...
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 34478999999999999999999998 5678888776 4664 699999999999999996445 44665555443
No 142
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.92 E-value=6.5e-09 Score=75.64 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=56.6
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
..|++.|||++++++||++||+.+....+ +++..++ .|++ +.|||+|.+.+++++|++. .| ..||.++|+..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPG-SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTT-CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccc-eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45899999999999999999999975444 4444544 6665 6899999999999999994 44 45677776543
No 143
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=2.2e-09 Score=79.62 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=62.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||++++.+||.++|+.|.-+ ..|.+..+.+ ...|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCE-EEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCE-eEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35689999999999999999999998533 2577777755 3579999999999999999997777777777887764
No 144
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.92 E-value=3.5e-10 Score=83.69 Aligned_cols=76 Identities=11% Similarity=0.053 Sum_probs=59.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||+++|.+||.++|+.|.-+.+ .++.+...|++.|-|+|.|.+.++|.+|+. .|+..+....|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 4568999999999999999999999875555 333443335788999999999999999999 444444455777753
No 145
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.91 E-value=2.3e-09 Score=87.16 Aligned_cols=74 Identities=16% Similarity=0.099 Sum_probs=63.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCC-CCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNL-TPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I-~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
..|+|.||||+++++||.++|+.|.. ....|++..|+ .|++ |-|||+|.+.+++++|+..+ | ..||.++|....
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 44899999999999999999999985 66889999998 7775 68999999999999999964 4 567877776553
No 146
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=4.7e-09 Score=78.71 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=59.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|.+||.++|+.|.-+ ..|.+..+ +++.|-|+|.|.+.++|.+|+...|+..+..+.|.++.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAI-RDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999999999999999999999533 13444332 46789999999999999999988777777776777754
No 147
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.91 E-value=2.7e-09 Score=81.58 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=62.4
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..|++.|||+++|++||.++|+.|.-+ .+|.+..|.+ .+.|-|+|.|.++++|.+|+...|+..+...+|.+..
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v-~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCE-EEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 369999999999999999999998533 3678888865 4789999999999999999998777777777777653
No 148
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=8.5e-09 Score=76.01 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=58.7
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
|+|.|||++++++||.++|+.+. ....|++..++.|++ +-|||+|.+.+++++|++.+ | ..||.++|...
T Consensus 20 l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 20 LFISGLPFSCTKEELEEICKAHG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 68899999999999999999986 346789999887775 68999999999999999743 4 55777777554
No 149
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.91 E-value=3.3e-09 Score=79.78 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=58.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCC-CCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-Cc------cceEEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGCN-LTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-GR------KGRLYRLE 133 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~-I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g~------~gRyv~i~ 133 (227)
+.|+|||+++|++||+++|+.+. |...+|++..|+ .|++ |-|||+|.+.+++++|++.+ |. .||-+.|.
T Consensus 12 lfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~ 90 (95)
T 2lkz_A 12 IILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVD 90 (95)
T ss_dssp EEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEE
T ss_pred EEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEE
Confidence 78999999999999999999986 467899999998 6776 68999999999999999954 43 36666654
No 150
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.91 E-value=4.1e-09 Score=79.60 Aligned_cols=75 Identities=16% Similarity=0.075 Sum_probs=60.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||+++|.+||.++|+.|.-+ .+|.+..+ +++.|-|+|.|.+.++|.+|+...|+..++...|.+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPI-RQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35689999999999999999999999643 25666654 35678999999999999999997666666666877754
No 151
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=6.6e-09 Score=78.66 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=59.7
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
...+++.|||++++++||.++|+.+. ....|++..++++..+-|||+|.+.+++++|++. .| ..||.++|...
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFG-KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTC-CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcC-CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34478999999999999999999986 4567999888766567999999999999999994 44 45676666544
No 152
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.8e-09 Score=81.16 Aligned_cols=62 Identities=6% Similarity=0.062 Sum_probs=52.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCC---CCcceeEEEEcCCHHHHHHHHHHh
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSL---PDSIKWATVRFPSQTQAMDAFIRK 211 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~---g~ptGeA~V~F~S~e~A~~Al~~~ 211 (227)
.+.|++.|||+++|++||.++|+.|.-+. +.++.+... |++.|-|+|.|.++++|.+|+...
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 45799999999999999999999996553 556555543 588999999999999999999876
No 153
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3.2e-09 Score=80.02 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=60.1
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||+++|.+||.++|+.|.-+.+- .+.++...|++.|-|+|.|.+.++|.+|+...|+..+..+.|.+..
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~-~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGP-PIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSS-CCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccce-EEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4689999999999999999999998544322 2222211357889999999999999999998777666666887753
No 154
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.89 E-value=3.7e-09 Score=77.04 Aligned_cols=71 Identities=11% Similarity=0.024 Sum_probs=59.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCC-CCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNL-TPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I-~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
+++.|||++++++||.++|+.+.. ...+|++..|+ .|++ |-|||+|.+.+++++|++.+ | ..||.++|...
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 789999999999999999999985 57899999998 7775 68999999999999999843 4 55777766544
No 155
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.41 E-value=1.8e-10 Score=87.66 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=64.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCc-------eEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCc
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASS-------ISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNN 219 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~-------I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~ 219 (227)
+..+|++.|||++++++||.++|+.|.-+.+. |.+..+...|++.|-|+|.|.+.++|.+|+...|+..+..+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 34579999999999999999999999755432 77888765568999999999999999999997666655555
Q ss_pred eeEEE
Q 027131 220 QVSVR 224 (227)
Q Consensus 220 ~v~lr 224 (227)
.|.++
T Consensus 86 ~l~V~ 90 (116)
T 2lcw_A 86 PIKVS 90 (116)
Confidence 77665
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.88 E-value=2.7e-09 Score=87.00 Aligned_cols=75 Identities=12% Similarity=0.022 Sum_probs=60.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
..+|+++|||+++|++||.+||+.|.-+ .+|.+..+...|++.|-|+|+|.+.++|.+|+...|+..++...|.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCE-EEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 3579999999999999999999998532 25777777645689999999999999999999977777777767766
No 157
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.2e-08 Score=74.09 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=59.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEcc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERAE 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~~ 136 (227)
..|+|.|||++++++||.++|+.+. ....|++..++++..+-|||+|.+.+++++|+.. .| ..||.++|....
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFG-KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTS-CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 3478999999999999999999986 3457888888766557999999999999999994 34 456777776553
No 158
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.87 E-value=3.4e-09 Score=87.65 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=65.9
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+.+|++.|||++++.+||.++|+.|.-+ ..|.+.++.. |++.|-|+|.|.+.++|.+|+...|+..+....|.+.+
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~-g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYDRS-GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCC-SEEEECCCTT-SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECCC-CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4589999999999999999999998533 4788888874 68999999999999999999998777777777888765
No 159
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.87 E-value=6.4e-09 Score=81.71 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCC--CcceeEEEEcCCHHHHHHHHHHhcCccc
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLP--DSIKWATVRFPSQTQAMDAFIRKNRGFC 216 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g--~ptGeA~V~F~S~e~A~~Al~~~n~rf~ 216 (227)
+...|+++|||+++|.+||.++|+.|.-+ .+|.+..+..+| ++.|-|+|.|.+.++|.+|+...|+..+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 72 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAV-YEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKV 72 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEE
Confidence 34679999999999999999999999533 368888887765 7899999999999999999987766443
No 160
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.87 E-value=2.7e-09 Score=76.19 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=56.8
Q ss_pred cEEEEeccCCCC------CHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCc-ee
Q 027131 149 KTVLLQNVPRIA------VAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNN-QV 221 (227)
Q Consensus 149 ~~V~LrgLPf~~------tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~-~v 221 (227)
.+|++.|||+++ |++||.++|+.|.-+. +|.+. +.. |++.|-|+|.|.++++|.+|+...|+..+..+ +|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~-~v~i~-~~~-g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-EED-GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE-EEECC-CBT-TBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE-EEEec-CCC-CcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 579999999999 8899999999996432 34444 333 58999999999999999999997776666655 55
Q ss_pred E
Q 027131 222 S 222 (227)
Q Consensus 222 ~ 222 (227)
.
T Consensus 79 ~ 79 (81)
T 2krb_A 79 R 79 (81)
T ss_dssp C
T ss_pred E
Confidence 4
No 161
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=1.4e-08 Score=74.89 Aligned_cols=67 Identities=16% Similarity=0.082 Sum_probs=55.4
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
++|.|||++++++||.++|+++ ..|++..++ .+++ +.|||+|.+.+++++|++. .| ..||.++|...
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 18 LFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp EEEECCCTTCCHHHHHHTSTTC----SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEeCCCCccCHHHHHHHhcCC----eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 6889999999999999999976 378898887 6665 6899999999999999994 34 44666666544
No 162
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=9.5e-09 Score=74.59 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=57.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLER 134 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~ 134 (227)
..+++.|||++++++||.++|+.+. ....|++..++ .+++ +.|||+|.+.+++++|+..+ | ..||.++|.-
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHHTTS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3478899999999999999999986 34678888887 4665 58999999999999999944 4 4466666643
No 163
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.1e-09 Score=80.28 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=60.8
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCc--ccCCceEEE-eecCCCCcceeEEEEcCCHHHHHHHHHHhc--CcccCCce
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCE--YEASSISFM-LRQSLPDSIKWATVRFPSQTQAMDAFIRKN--RGFCLNNQ 220 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~--i~p~~I~l~-~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n--~rf~gn~~ 220 (227)
.+...|++.|||+++|.+||.++|..|. |. .|.+. .+...|++.|-|+|.|.++++|.+|+...+ +..+....
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~--~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVL--DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEE--EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCce--EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3456899999999999999999999883 33 46665 455546889999999999999999999864 34444457
Q ss_pred eEEEe
Q 027131 221 VSVRV 225 (227)
Q Consensus 221 v~lrv 225 (227)
|.+..
T Consensus 84 l~V~~ 88 (109)
T 2dis_A 84 IAVDW 88 (109)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 76653
No 164
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.86 E-value=1.4e-08 Score=76.88 Aligned_cols=71 Identities=8% Similarity=0.051 Sum_probs=55.9
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEE
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRL 132 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i 132 (227)
....++|.|||++++++||.++|+.|. ....|++..++ .|++ +-|||+|.+.+++++|++.+ | ..||.++|
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFG-NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSC-EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344589999999999999999999886 34568888886 5664 69999999999999999954 4 33454444
No 165
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.86 E-value=2.3e-08 Score=75.47 Aligned_cols=76 Identities=18% Similarity=0.070 Sum_probs=61.4
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEE
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLER 134 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~ 134 (227)
.....|+|.|||++++++||.++|+.|.- ...|++..++ .+.+ +.|||+|.+.+++++|++.+ | ..||.++|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGR-ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44455899999999999999999998852 4678888887 6775 68999999999999999844 4 4567777765
Q ss_pred cc
Q 027131 135 AE 136 (227)
Q Consensus 135 ~~ 136 (227)
..
T Consensus 92 a~ 93 (115)
T 2dgo_A 92 AT 93 (115)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 166
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=1e-08 Score=77.71 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=62.9
Q ss_pred CCCcEEEEeccCCCCCHHHHH---HccCCCcccCCceEEEeecCC---CCcceeEEEEcCCHHHHHHHHHHhcCcccCCc
Q 027131 146 YNGKTVLLQNVPRIAVAEDVE---RFLSGCEYEASSISFMLRQSL---PDSIKWATVRFPSQTQAMDAFIRKNRGFCLNN 219 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~---~FFsG~~i~p~~I~l~~d~~~---g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~ 219 (227)
....+|++.|||++++.+||. ++|+.|.-+ ..|.+..+.+. +++.|-|+|.|.++++|.+|+...|+..+..+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i-~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKI-HKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCE-EEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCE-EEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 345689999999999999999 999999633 24667666542 35679999999999999999999777777776
Q ss_pred eeEEE
Q 027131 220 QVSVR 224 (227)
Q Consensus 220 ~v~lr 224 (227)
.|.+.
T Consensus 92 ~l~V~ 96 (111)
T 2cpi_A 92 TLKAS 96 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77765
No 167
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.85 E-value=1.8e-08 Score=74.64 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=58.3
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccc---eEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKG---RLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~g---Ryv~i~~~ 135 (227)
..++|.|||++++++||.++|+.+. ....|++..++.|.+ +-|||+|.+.+++++|++.+ | ..| |.++|...
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 3478999999999999999999886 356788888887775 68999999999999999843 4 234 66666544
No 168
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.85 E-value=3.4e-09 Score=90.99 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=65.9
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcc-cCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEY-EASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i-~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|+|.|||+++|++||.++|+.|-+ .-..|.|.+|...|++.|-|||.|.+.++|.+|+...|+.-+....|.|+.
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457999999999999999999999863 234788999865679999999999999999999997776666666888764
No 169
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.85 E-value=6.7e-09 Score=86.50 Aligned_cols=76 Identities=14% Similarity=0.030 Sum_probs=65.7
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
..+|++.|||+++|++||.++|+-|.-+ .+|.|..|...|++.|-|+|.|.+.++|.+|+...|+..+....+.+.
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPI-LSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCE-EEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 4589999999999999999999988422 368888887667899999999999999999999999988888777654
No 170
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=5e-09 Score=78.89 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=55.7
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC-----cee
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN-----NQV 221 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn-----~~v 221 (227)
...+|++.|||+++|.+||.++|+.|.-+ ..|.+..+ |-|+|.|.++++|.+|+...|+..+.. ..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDV-CYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCE-EEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999988422 24555544 579999999999999999877766655 566
Q ss_pred EEE
Q 027131 222 SVR 224 (227)
Q Consensus 222 ~lr 224 (227)
.+.
T Consensus 86 ~V~ 88 (108)
T 1x4c_A 86 RVK 88 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 171
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.85 E-value=8.7e-09 Score=73.98 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=57.4
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEE
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLE 133 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~ 133 (227)
.+++.|||++++++||.++|+.+. ....|++..++ .|++ +-|||+|.+.+++++|++.++ ..||.++|.
T Consensus 13 ~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 13 KMFVGGLSWDTSKKDLKDYFTKFG-EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 468999999999999999999986 44678898887 5775 589999999999999999655 456666654
No 172
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=1.8e-08 Score=74.05 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=58.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEcc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAE 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~ 136 (227)
..+++.|||++++++||.++|+.+. ....|++..++ .+++ +-|||+|.+.+++++|+++.| ..||.++|....
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFKKFG-VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHSSSS-CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3478999999999999999999986 44678888886 5664 689999999999999999444 456767765543
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.85 E-value=8.8e-09 Score=73.62 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=52.5
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCC----c--ccCC----ceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccC
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGC----E--YEAS----SISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCL 217 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~----~--i~p~----~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~g 217 (227)
..+|++.|||+++|.+||.++|+.| . ..+. ++.+. +..|-|+|.|.++++|.+|+ ..|+..+.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~------~~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC------SSSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec------CCCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4589999999999999999999955 2 2221 22222 33578999999999999999 66666666
Q ss_pred CceeEEE
Q 027131 218 NNQVSVR 224 (227)
Q Consensus 218 n~~v~lr 224 (227)
.++|.++
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 6577664
No 174
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.84 E-value=3.4e-09 Score=82.09 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=58.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+..|++.|||+++|.+|+.++|+.|...-..+.+.. +++.|-|+|.|.++++|.+|+...|+.-+...+|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457999999999999999999997742112333322 25778999999999999999998888777777887754
No 175
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.83 E-value=8.6e-09 Score=78.17 Aligned_cols=71 Identities=11% Similarity=-0.017 Sum_probs=58.7
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
.+++.|||++++++||.++|+.|. ....|++..++ .|++ |-|||+|.+.+++++|++.++ ..||.++|...
T Consensus 27 ~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 27 KMFIGGLSWQTTQEGLREYFGQFG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTS-CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHccC-CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 378999999999999999999986 34678888887 4665 699999999999999999665 45677777654
No 176
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.82 E-value=2.1e-08 Score=74.88 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=58.0
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-------C--ccceEEEE
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-------G--RKGRLYRL 132 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-------g--~~gRyv~i 132 (227)
.++|.|||++++++||.++|+.+. ....|++..|+ .|.+ +-|||+|.+.+++++|+..+ | ..||.+.|
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v 95 (111)
T 1x4h_A 17 TVFIRNLSFDSEEEALGEVLQQFG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKV 95 (111)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEE
Confidence 378999999999999999999886 34678888887 5664 68999999999999999955 4 45677776
Q ss_pred EEc
Q 027131 133 ERA 135 (227)
Q Consensus 133 ~~~ 135 (227)
...
T Consensus 96 ~~a 98 (111)
T 1x4h_A 96 DLA 98 (111)
T ss_dssp ECC
T ss_pred EEC
Confidence 544
No 177
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=8e-09 Score=78.04 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=58.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
..|+|.|||++++++||.++|+.|. ....|++..|+ .|.+ +-|||+|.+.+++++|+.+.| ..||.++|...
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCC-CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 3489999999999999999999986 44678888888 4665 689999999999999996445 45777777654
No 178
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.81 E-value=1.4e-08 Score=72.49 Aligned_cols=73 Identities=18% Similarity=0.067 Sum_probs=58.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
...+++.|||++++++||.++|+.+. ....|++..++ .|.+ +.|||+|.|.+++++|++.+ | ..||.++|.-.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34589999999999999999999886 34678888887 6665 68999999999999999944 4 44566555443
No 179
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.81 E-value=2.1e-08 Score=71.01 Aligned_cols=70 Identities=16% Similarity=0.044 Sum_probs=57.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
+++.|||++++++||.++|+.+. ....|++..++ .|++ +-|||+|.+.+++++|+.. .| ..||.++|.-.
T Consensus 4 l~V~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFKDFP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHTTST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 78999999999999999999886 44678888886 6665 6899999999999999994 34 44666666543
No 180
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.81 E-value=7.8e-09 Score=75.22 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=57.7
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEE
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLE 133 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~ 133 (227)
...+++.|||++++++||.++|+.|. ....|++..+++|.+ +-|||+|.+.+++++|++. .| ..||.++|.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34578999999999999999999986 345689999887775 6899999999999999994 44 345655554
No 181
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=2.1e-08 Score=74.22 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=57.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-CccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-GRKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g~~gRyv~i~~~ 135 (227)
|++.|||++++++||.++|+.|. ....|++..++ .|.+ +-|||+|.+.+++++|+... ...||.+.|...
T Consensus 18 l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 18 LIVLGLPWKTTEQDLKEYFSTFG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLP 90 (103)
T ss_dssp EEEESCCSSCCHHHHHHHHGGGS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECC
T ss_pred EEEEcCCCcCCHHHHHHHHHhcC-CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEec
Confidence 78999999999999999999986 34578888987 5775 58999999999999999931 245677777554
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.81 E-value=9.5e-09 Score=85.90 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=63.5
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.++|++.|||+++|.+||.+||+.|.-+ ..|.+..+.. |++.|-|+|.|.++++|.+|+...+..+.|. +|.++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr-~l~V~ 182 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQV-LNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKET-DLLIL 182 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCE-EEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTE-ECEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCE-EEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCE-EEEEE
Confidence 4689999999999999999999999533 3588888877 6899999999999999999999888877666 66654
No 183
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.81 E-value=3e-09 Score=78.75 Aligned_cols=72 Identities=8% Similarity=0.106 Sum_probs=58.4
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
.++|++.|||++++.+||.++|+.|.-+ ..|.+..+.. |++.|-|+|.|.+.++|.+|+. ++.-+....|.+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~-g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSV-KEVKIITDRT-GVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECTT-SCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEEECCC-CCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 3579999999999999999999999533 4688888874 6899999999999999999999 333333335543
No 184
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.80 E-value=4.1e-08 Score=74.21 Aligned_cols=71 Identities=7% Similarity=0.065 Sum_probs=58.0
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
.|+|.|||++++++||.++|+.|. ....|++..++ .+++ +-|||+|.+.+++++|++.+ | ..||.++|...
T Consensus 27 ~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFMPFG-NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGS-CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 378999999999999999999886 34678999988 6775 58999999999999999744 4 44666666544
No 185
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.80 E-value=1.8e-08 Score=79.07 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=60.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCc-------eEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCce
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASS-------ISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQ 220 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~-------I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~ 220 (227)
..+|++.|||+++|.+||.++|+.|.-+.+- |.+. .. |++.|-|+|.|.+.++|.+|+...|+..+....
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~-g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KE-GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EE-TTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cC-CCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4589999999999999999999999644332 3333 23 578899999999999999999987777777778
Q ss_pred eEEEe
Q 027131 221 VSVRV 225 (227)
Q Consensus 221 v~lrv 225 (227)
|.+..
T Consensus 122 l~V~~ 126 (143)
T 3egn_A 122 MVVQF 126 (143)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 77754
No 186
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.80 E-value=1.4e-08 Score=76.09 Aligned_cols=69 Identities=6% Similarity=0.065 Sum_probs=56.9
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLER 134 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~ 134 (227)
+++.|||++++++||.++|+.|. ....|++..|+ .|++ |-|||+|.+.+++++|++.+ | ..||-++|..
T Consensus 22 lfV~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 22 LIVNYLPQNMTQDELRSLFSSIG-EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 78999999999999999999985 34678888888 6776 58999999999999999843 5 4466666643
No 187
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.80 E-value=6.6e-09 Score=72.65 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=53.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRL 132 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i 132 (227)
+++.|||++++++||.++|+.+. ....|++..++ .|++ +-|||+|.|++++++|++..| ..||.+++
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v 72 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFG-KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 72 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTS-CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEE
T ss_pred EEEecCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEE
Confidence 57899999999999999999986 34678888887 5665 689999999999999998444 34554444
No 188
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=9e-09 Score=74.92 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=56.7
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC-cccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR-GFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~-rf~gn~~v~lrv 225 (227)
...|++.|||+++|.+||.++|+.|.-+-..+.+. +.|-|+|.|.++++|.+|+...|+ ..+...+|.++.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 35799999999999999999999987533444442 346799999999999999998777 555666777754
No 189
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.79 E-value=1.1e-07 Score=72.92 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=61.7
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEcc
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERAE 136 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~~ 136 (227)
....++|.|||++++++||.++|+.|. ....|++..++.|++ +-|||+|.+.+++++|++. .| ..||.++|.-..
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 334589999999999999999999986 447899999886664 6999999999999999993 44 567777776553
No 190
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=2.9e-08 Score=75.12 Aligned_cols=73 Identities=21% Similarity=0.097 Sum_probs=59.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEcc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERAE 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~ 136 (227)
..|+|.|||++++++||.++|+.|. ....|++..++ .|.+ +.|||+|.+.+++++|++..| ..||.++|....
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWG-KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSC-CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 3478999999999999999999986 34678898887 5665 699999999999999998643 456777776553
No 191
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=2.4e-08 Score=73.99 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=58.5
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
.|+|.|||++++++||.++|+.+. ....|++..++ .+.+ +-|||+|.+.+++++|++.+ | ..||.++|....
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 17 TVYVGGLDEKVSEPLLWELFLQAG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 468899999999999999999986 34668888887 6665 58999999999999999954 4 456777776553
No 192
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1.1e-08 Score=76.05 Aligned_cols=72 Identities=8% Similarity=-0.043 Sum_probs=58.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
..|+|.|||++++++||.++|+.+. ....|++..++ .+++ +.|||+|.+.+++++|+...| ..||.++|...
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYG-EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTS-CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 4478999999999999999999986 44678888887 5665 689999999999999999644 44666666544
No 193
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.79 E-value=1.4e-08 Score=70.98 Aligned_cols=68 Identities=10% Similarity=-0.010 Sum_probs=55.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLE 133 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~ 133 (227)
+++.|||++++++||.++|+.+. ....|++..++ .|++ |-|||+|.|.+++++|++.+. ..||.+++.
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~ 74 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 74 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTS-CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEE
Confidence 67899999999999999999986 34778998887 5665 699999999999999999553 445555543
No 194
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.79 E-value=7.6e-09 Score=76.39 Aligned_cols=70 Identities=20% Similarity=0.133 Sum_probs=56.5
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+|++.|||+++|++||.++|+.|.-+ .+|.+..+ +.|-|+|.|.+.++|.+|+...|+..+..+.|.++.
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPL-RTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCC-SEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence 68999999999999999999988532 46777766 457899999999999999997555555555777654
No 195
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=4e-08 Score=72.73 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=59.8
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
...++|.|||++++++||.++|+.+. ....|++..++++..+-|||+|.+.+++++|+..+ | ..||.++|....
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIG-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHS-CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcC-CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34478999999999999999999886 34578888887655679999999999999999943 4 457777776553
No 196
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=8.1e-08 Score=70.82 Aligned_cols=70 Identities=21% Similarity=0.184 Sum_probs=57.0
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
..|+|.|||++++++||.++|+.+. .|++..+..+++ +.|||+|.+.+++++|+..+ | ..||.++|.-..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g----~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKAT----FIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSCS----EEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCC----EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 3478999999999999999999873 677777766664 69999999999999999944 4 457777776553
No 197
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=5.9e-08 Score=71.79 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=59.1
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
...++|.|||++++++||.++|+.|. ....|++..++ .+.+ +-|||+|.+.+++++|+..+ | ..||.++|...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFG-SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTC-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 34478999999999999999999986 34668888887 6665 58999999999999999944 4 45666666544
No 198
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.5e-08 Score=72.32 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=54.6
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLE 133 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~ 133 (227)
+++.|||++++++||.++|+.+. ....|++..++ .+.+ +.|||+|.+.+++++|++.+ | ..||.++|.
T Consensus 19 l~V~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 19 VYVSNLPFSLTNNDLYRIFSKYG-KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp EEEESCCTTSCHHHHHHHTTTTS-CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 57899999999999999999986 34568888877 4665 68999999999999999844 4 345655553
No 199
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.78 E-value=3e-08 Score=73.04 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=58.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|.+||.++|+.|.-+ ..|.+.. ..|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKA-GEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCC-SEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCe-EEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 45689999999999999999999999633 3455542 246899999999999999988777766667887764
No 200
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.78 E-value=8.3e-09 Score=75.34 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=57.6
Q ss_pred CCcEEEEeccCCCCCHHHHH----HccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeE
Q 027131 147 NGKTVLLQNVPRIAVAEDVE----RFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVS 222 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~----~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~ 222 (227)
...+|++.|||++++.+||. ++|+.|.-+. .|.+. .. |++.|-|+|.|.+.++|.+|+...|+..++.++|.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~-~v~i~--~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL-DILVS--RS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE-EEECC--HH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE-EEEEE--cC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 35689999999999999999 9999985221 23332 12 46778999999999999999998776666666777
Q ss_pred EE
Q 027131 223 VR 224 (227)
Q Consensus 223 lr 224 (227)
+.
T Consensus 83 v~ 84 (97)
T 1nu4_A 83 IQ 84 (97)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 201
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=5.8e-08 Score=71.82 Aligned_cols=71 Identities=11% Similarity=-0.075 Sum_probs=57.3
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
..++|.|||++++++||.++|+.+. ....|++..+ .|.+ +-|||+|.+.+++++|+.. .| ..|+.+.|.-.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSPFG-TITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTTTS-CEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3478999999999999999999886 3456888887 6664 6899999999999999994 34 45666666544
No 202
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.77 E-value=3.1e-08 Score=73.49 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=57.4
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEec-C-CCCc-ceEEEEeCCHHHHHHHHHHh--C--ccceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYT-R-NYMP-FAMMMQFPSFSAYDNAFRLI--G--RKGRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~yd-r-~g~~-~eAfV~F~S~~d~~~AL~~l--g--~~gRyv~i~~~~ 136 (227)
++|.|||++++++||.++|+.+. ....|++..+ + .+.+ +-|||+|.+.+++++|+..+ | ..||.+.|....
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~ 95 (107)
T 2cph_A 18 ILVRNIPFQANQREIRELFSTFG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95 (107)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred EEEeCCCCcCCHHHHHHHHHccC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCC
Confidence 78999999999999999999986 3456777777 3 5664 68999999999999999965 4 456766665553
No 203
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.77 E-value=2.5e-09 Score=86.09 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=55.1
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCC----c--ccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGC----E--YEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~----~--i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
.+.|++.|||+++|++||.+||+.| . +.|.....-... +++.|-|+|.|.+.++|.+|+ ..|+..+...+|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 3589999999999999999999965 3 233211111111 356789999999999999999 666666666677
Q ss_pred EEE
Q 027131 222 SVR 224 (227)
Q Consensus 222 ~lr 224 (227)
.+.
T Consensus 81 ~v~ 83 (198)
T 2yh0_A 81 KIR 83 (198)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 204
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=4.4e-08 Score=71.30 Aligned_cols=73 Identities=14% Similarity=-0.008 Sum_probs=58.3
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCe-EEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEcc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDL-KVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERAE 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I-~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~~ 136 (227)
..++|.|||++++++||.++|+.+.- ...| ++..|+ .+.+ +.|||+|.|.+++++|+.. .| ..||.++|.-..
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSC-BSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 34789999999999999999999874 3456 888885 6664 6999999999999999994 34 456766665543
No 205
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=8.5e-09 Score=76.08 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=61.4
Q ss_pred CCcEEEEeccCCCCCHHHHH----HccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeE
Q 027131 147 NGKTVLLQNVPRIAVAEDVE----RFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVS 222 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~----~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~ 222 (227)
++..|++.|||++++.+||. ++|+.|.-+ ..|.+..+... .|-|+|.|.++++|.+|+...|+.-+..+.|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v-~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKV-KSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCE-EEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcE-EEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 46689999999999999999 999988532 25777777653 57899999999999999998887777776777
Q ss_pred EEe
Q 027131 223 VRV 225 (227)
Q Consensus 223 lrv 225 (227)
+..
T Consensus 84 V~~ 86 (96)
T 2dgx_A 84 VSL 86 (96)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 206
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.76 E-value=3.4e-08 Score=73.41 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=59.2
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEE
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLER 134 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~ 134 (227)
....++|.|||++++++||.++|+.+. ....|++..++.|.+ +.|||+|.+.+++++|++. .| ..||.++|.-
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345589999999999999999999885 336889999987775 6899999999999999994 44 4456655543
No 207
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.76 E-value=1.5e-08 Score=72.62 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=58.2
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
.+++.|||++++++||.++|+.+. ....|++..++ .|++ +-|||+|.+.+++++|+.+.| ..||.++|...
T Consensus 8 ~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 8 SIYVGNVDYGATAEELEAHFHGCG-SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPK 82 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGC-CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEc
Confidence 378999999999999999999885 34678888887 6665 689999999999999996445 45677776654
No 208
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=5.4e-08 Score=70.71 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=58.1
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
.+++.|||++++++||.++|+.+. ....|++..++ .+.+ +.|||+|.+.+++++|++. .| ..||-++|...
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFEPFG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 468899999999999999999986 45678888887 4665 6999999999999999994 34 45676776554
No 209
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.76 E-value=1.2e-08 Score=72.56 Aligned_cols=70 Identities=10% Similarity=-0.021 Sum_probs=55.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLE 133 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~ 133 (227)
..+++.|||++++++||.++|+.+. ....|++..++ .+++ +-|||+|.+.+++++|++. .| ..||.++|.
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGGGS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHhccC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4479999999999999999999986 44678888886 6654 6899999999999999974 34 345544443
No 210
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=4.5e-08 Score=71.82 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=60.3
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
..-++|.|||++++++||.++|+.|. ....|++..++ .+.+ +-|||+|.+.+++++|+..+ | ..||.++|....
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34478999999999999999999986 34668888887 6665 68999999999999999743 4 457777776554
Q ss_pred c
Q 027131 137 Q 137 (227)
Q Consensus 137 ~ 137 (227)
.
T Consensus 87 ~ 87 (99)
T 1whw_A 87 I 87 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 211
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.75 E-value=6.7e-09 Score=78.41 Aligned_cols=99 Identities=9% Similarity=0.079 Sum_probs=73.5
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHH-HhC--ccceEEEEEEcccccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFR-LIG--RKGRLYRLERAEQSEW 140 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~-~lg--~~gRyv~i~~~~~~~~ 140 (227)
.+++.|||++++++||.++|+.+.- ...|++..+.. ..+-|||+|.+.+++.+|+. +.| ..||.+.|.-......
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~-v~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 10 ILYIRNLPYKITAEEMYDIFGKYGP-IRQIRVGNTPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSC-EEEEEEECSTT-TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCC-eEEEEEeeCCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 4689999999999999999999862 34577765432 25789999999999999999 445 4566666654421111
Q ss_pred ccccCCCCcEEEEeccCCCCCHHHHHHccCCCcccC
Q 027131 141 DIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEA 176 (227)
Q Consensus 141 ~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p 176 (227)
. ++++...+++++.++|.-+.+..
T Consensus 88 -----~-------~~~~~~~~~~~l~~~~~~~g~~~ 111 (115)
T 3lqv_A 88 -----F-------QKMDTKKKEEQLKLLKEKYGINT 111 (115)
T ss_dssp -----T-------TTSCHHHHHHHHHHHHHHHCCCC
T ss_pred -----h-------hhhhHhHhHHHHHHHHHHhCCCC
Confidence 1 67788889999999998776543
No 212
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.75 E-value=8.8e-09 Score=88.37 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=61.6
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCC-CCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNL-TPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I-~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
.|+|.||||+++++||+++|+.|.+ ....|+|.+|+ .|++ +-|||+|.+.+++++|++.+ | ..||.++|...
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 3899999999999999999999986 56789999997 7775 68999999999999999943 4 56787777654
No 213
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.1e-08 Score=73.99 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=57.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
+..+|++.|||++++.+||.++|+.|.-+ .+|.+. ++.|-|+|.|.+.++|.+|+...|+..++...|.++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFI-LDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCC-SEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCE-EEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35689999999999999999999999644 245554 345789999999999999998877776666566543
No 214
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=2.5e-08 Score=73.88 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=58.3
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEcc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERAE 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~~ 136 (227)
..|+|.|||++++++||.++|+.+. ....|++..++ .+.+ +-|||+|.+.+++++|+.. .| ..||.++|....
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 14 ITLKVDNLTYRTSPDSLRRVFEKYG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 3478999999999999999999986 34567888877 4665 6899999999999999994 44 456766665553
No 215
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=3.3e-08 Score=71.64 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=55.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|.+||.++|+.|.-+ ..|.+. .|-|+|.|.+.++|.+|+...|+..+...+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKV-LECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCE-EEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 34679999999999999999999999532 234443 35799999999999999987777666666887764
No 216
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.74 E-value=1e-08 Score=78.41 Aligned_cols=66 Identities=9% Similarity=0.076 Sum_probs=51.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCce
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQ 220 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~ 220 (227)
.+..|++.|||+++|++||.+||+.|.-+ ..|.+..+ |-|+|.|.++++|.+|+...|+.-+...+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDV-CYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCE-EEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34579999999999999999999988411 13444433 67999999999999999977766655556
No 217
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=7.6e-08 Score=70.92 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=57.9
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
.++|.|||++++++||.++|+.+. ....|++..++ .+.+ +-|||+|.+.+++++|++.+ | ..||.++|...
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHTTTS-CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHhhccC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 368999999999999999999986 44668888886 5664 68999999999999999843 4 45677777554
No 218
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.74 E-value=4.8e-09 Score=82.62 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=54.0
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCC----ccc--CC-ceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCce
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGC----EYE--AS-SISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQ 220 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~----~i~--p~-~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~ 220 (227)
.+.|++.|||+++|.+||.++|+.| .+. +. .|.-..- +++.|-|+|.|.++++|.+|+ ..|+..+..++
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE---ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe---cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 4589999999999999999999976 322 11 2222211 245689999999999999999 66666666667
Q ss_pred eEEE
Q 027131 221 VSVR 224 (227)
Q Consensus 221 v~lr 224 (227)
|.++
T Consensus 80 i~v~ 83 (172)
T 2g4b_A 80 LKIR 83 (172)
T ss_dssp CEEE
T ss_pred eeec
Confidence 7665
No 219
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.74 E-value=4.6e-08 Score=75.53 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=55.6
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLE 133 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~ 133 (227)
.-++|.|||++++++||.++|+.+. ....|++..++ .|++ +.|||+|.+.+++++|++.+ | ..||.++|.
T Consensus 64 ~~l~v~nlp~~~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 64 RVLYVGGLAEEVDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CEEEEECCCTTCCHHHHHHHHGGGS-CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred cEEEEEeCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3478999999999999999999986 34568888886 5664 68999999999999999844 3 346666553
No 220
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.74 E-value=8.5e-09 Score=77.42 Aligned_cols=75 Identities=12% Similarity=0.203 Sum_probs=60.4
Q ss_pred CcEEEEeccCCCC------CHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCc-e
Q 027131 148 GKTVLLQNVPRIA------VAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNN-Q 220 (227)
Q Consensus 148 g~~V~LrgLPf~~------tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~-~ 220 (227)
..+|++.|||+++ |++||.++|+.|.-+. +|.+. +.. |++.|-|+|.|.+.++|.+|+...|+..++.+ .
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~-~v~i~-~~~-g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-EED-GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE-EEECC-CBT-TBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE-EEEee-CCC-CCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 4689999999999 8999999999985332 34544 434 58899999999999999999998777766665 7
Q ss_pred eEEEe
Q 027131 221 VSVRV 225 (227)
Q Consensus 221 v~lrv 225 (227)
|.+..
T Consensus 92 l~V~~ 96 (105)
T 2nlw_A 92 FRVNL 96 (105)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77754
No 221
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=6.3e-08 Score=72.73 Aligned_cols=71 Identities=6% Similarity=-0.072 Sum_probs=58.6
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
.|+|.|||++++++||.++|+.|. ....|++..+++|.+ +-|||+|.+.+++++|+..+ | ..||.++|...
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSMAG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 368899999999999999999986 346688889887775 68999999999999999943 4 45676776554
No 222
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.73 E-value=4.1e-08 Score=74.54 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=56.6
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
+..+|++.|||+++|++||.++|+.|.-+ ..|.+. .|-|+|.|.+.++|.+|+...|+..++.+.|.+.
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPM-KEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCC-CEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45689999999999999999999999633 345555 3579999999999999999877666666677665
No 223
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.73 E-value=3.8e-08 Score=72.41 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=56.5
Q ss_pred CCcEEEEeccCC-CCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPR-IAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf-~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||+ ++|.+||.++|+.|.-+. .|.+ +.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~-~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINI--------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC-EEEE--------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEE--------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 456899999999 999999999999995332 3444 246799999999999999998777766666777654
No 224
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.73 E-value=4.9e-08 Score=73.42 Aligned_cols=70 Identities=10% Similarity=-0.001 Sum_probs=55.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccc-----eEEEEE
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKG-----RLYRLE 133 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~g-----Ryv~i~ 133 (227)
...|+|.|||++++++||.++|+.|. ....|++..| +-|||+|.+.+++++|++.+ | ..| |.++|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGS-CEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 34589999999999999999999886 3345666554 89999999999999999944 4 345 777776
Q ss_pred Eccc
Q 027131 134 RAEQ 137 (227)
Q Consensus 134 ~~~~ 137 (227)
....
T Consensus 89 ~a~~ 92 (108)
T 1x4c_A 89 VDGP 92 (108)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 6543
No 225
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=4.2e-08 Score=72.35 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=58.2
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
..++|.|||++++++||.++|+.|. ....|++..++ .+.+ +.|||+|.+.+++++|++.+ | ..||.++|...
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHS-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999886 45678888887 5655 69999999999999999743 4 45676666554
No 226
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.72 E-value=6.9e-08 Score=73.14 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=58.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
.-+++.|||++++++||.++|+.|. ....|++..++ .|++ |-|||+|.+.+++.+|++. .| ..||.++|...
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFEPFG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHTTTS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4478999999999999999999986 44678888887 5665 6899999999999999984 34 45666666543
No 227
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.1e-08 Score=74.70 Aligned_cols=73 Identities=18% Similarity=0.096 Sum_probs=57.4
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCce-EEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSI-SFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I-~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||+++|.+||.++|+.|.-+. .| .+..+. .+|.|+|.|.++++|.+|+...|+..++.+.|.+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~i~~~~----~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVE-SCEQVNTDS----ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEE-EEEEECCSS----SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeE-EEEEeecCC----CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45799999999999999999999885331 34 344443 345599999999999999997777777777887764
No 228
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.71 E-value=2.4e-08 Score=73.33 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=55.7
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccC--CceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCL--NNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~g--n~~v~lrv 225 (227)
..+|++.|||+++|.+||.++|+.|.-+ ..|.+..+ .|-|+|.|.+.++|.+|+...|+..+. ...|.++.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSI-RTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCE-EEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4579999999999999999999999533 22333322 467999999999999999976666665 66777764
No 229
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.71 E-value=3.6e-08 Score=73.26 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=56.9
Q ss_pred CCCcEEEEeccCC-CCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 146 YNGKTVLLQNVPR-IAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 146 ~~g~~V~LrgLPf-~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.+..+|++.|||+ +++++||.++|+.|.-+. .|.+ +.|-|+|.|.+.++|.+|+...|+..++.+.|.+.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~-~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEE-EEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3467899999999 999999999999984221 2333 24689999999999999999888877766687775
Q ss_pred e
Q 027131 225 V 225 (227)
Q Consensus 225 v 225 (227)
.
T Consensus 91 ~ 91 (97)
T 2xnq_A 91 V 91 (97)
T ss_dssp E
T ss_pred e
Confidence 4
No 230
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.71 E-value=2.2e-08 Score=77.92 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=58.1
Q ss_pred EEEeCCCCCCCHHHHHHhcCCC-CCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-Cc------cceEEEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGC-NLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-GR------KGRLYRLER 134 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~-~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g~------~gRyv~i~~ 134 (227)
++|.||||+++++||.++|+.| .|...+|++..|+ .|++ |-|||+|.+. ++.+|+..+ |. .||-++|..
T Consensus 26 lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~ 104 (131)
T 2m2b_A 26 IILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEF 104 (131)
T ss_dssp EEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEE
Confidence 6899999999999999999999 4555679999999 7775 6899999999 999999944 43 567666654
Q ss_pred c
Q 027131 135 A 135 (227)
Q Consensus 135 ~ 135 (227)
.
T Consensus 105 a 105 (131)
T 2m2b_A 105 A 105 (131)
T ss_dssp C
T ss_pred C
Confidence 4
No 231
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=6.5e-08 Score=71.25 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=56.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||+++|.+||.++|+.|. +..|.-.. .+.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g--~g~v~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIK--PGAVERVK-----KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTS--TTCEEEEE-----ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcC--CcceEEEE-----EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346899999999999999999999982 12233222 2346899999999999999997777777776777653
No 232
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=5.1e-08 Score=70.90 Aligned_cols=70 Identities=9% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||+++|.+||.++|+.|.-+ ..|.+. .+-|+|.|.++++|.+|+...|+.-+....|.++.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPV-IECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCC-CEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45689999999999999999999999532 244443 23699999999999999988777766666887764
No 233
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.69 E-value=7.4e-09 Score=72.22 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=50.1
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg 124 (227)
+++.|||++++++||.++|+.+. ....|++..++ .|.+ +.|||+|.+.+++++|++..+
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 62 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFG-EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHS-CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC
Confidence 57899999999999999999986 34677887877 4664 689999999999999999544
No 234
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=2.3e-08 Score=75.09 Aligned_cols=73 Identities=15% Similarity=0.066 Sum_probs=58.0
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
....+|++.|||++++.+||.++|+.|.-+ ..|.+..+ .|-|+|.|.+.++|.+|+...|+..+..+.|.++.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i-~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQI-MEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCE-EEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345689999999999999999999988522 24555544 36799999999999999988777766666777653
No 235
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=5.6e-08 Score=69.40 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=54.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYR 131 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~ 131 (227)
..+++.|||++++++||.++|+.+. ....|++..++ .|.+ +-|||+|.+.+++++|++.+ | ..||.++
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYG-KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTS-CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 3578999999999999999999886 44678888886 5665 68999999999999999943 4 4455443
No 236
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=2.4e-08 Score=75.75 Aligned_cols=68 Identities=15% Similarity=0.074 Sum_probs=56.6
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLE 133 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~ 133 (227)
+++.|||++++.+||..+|+.+. ....|.+..|+.|++ |-|||+|.+++++++|+...| ..||.+.|.
T Consensus 14 lfV~~Lp~~~te~~L~~~F~~~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 14 VYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 84 (103)
T ss_dssp EEEECCCTTCCHHHHHHHHHTSS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEE
T ss_pred EEEECCCCCCCHHHHHHHHhhcC-CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEE
Confidence 67899999999999999999986 447789988887765 689999999999999999434 456666654
No 237
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.67 E-value=5.5e-09 Score=82.90 Aligned_cols=76 Identities=11% Similarity=0.082 Sum_probs=56.9
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.+..+|++.|||+++|.+||.++|+.+--+.. +.+ .+...|++.|-|+|.|.+.++|.+|+. .|+..++.++|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~-~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAV-VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCC-CEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEE-EECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 34668999999999999999999987743333 222 222225788999999999999999996 55555555577765
No 238
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=3.1e-08 Score=70.56 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=55.4
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHh-cCcccCCceeEEE
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK-NRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~-n~rf~gn~~v~lr 224 (227)
...+|++.|||.+++.+||.++|+.|.-+ ..|.+.. +.|-|+|.|.+.++|.+|+... |+..+..+.|.++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i-~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEI-RTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCE-EEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCE-eEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34689999999999999999999998532 2355543 3468999999999999999975 6655555576665
No 239
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=5.5e-08 Score=71.32 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=52.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l 123 (227)
..+++.|||++++++||.++|+.+.-....|++..|+ .|++ +-|||+|.+.+++++|+..+
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 72 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI 72 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH
Confidence 4478999999999999999999987434489999998 6665 68999999999999999943
No 240
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.67 E-value=1.6e-08 Score=79.31 Aligned_cols=62 Identities=5% Similarity=0.120 Sum_probs=53.1
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHH
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIR 210 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~ 210 (227)
...|++.|||+++|++||.++|+.|.-+ .+|.+..+...|++.|-|+|.|.+.++|.+|+..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTV-TDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCE-EEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 3579999999999999999999999522 3566777765578999999999999999999985
No 241
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=7.9e-08 Score=70.92 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=58.7
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
+++.|||++++++||.++|+.+. ....|++..++ .|.+ +-|||+|.+.+++++|++.+ | ..||.++|....
T Consensus 11 l~V~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 11 VFVGNIPYEATEEQLKDIFSEVG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHHTTS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred EEEeCCCCcCCHHHHHHHHHhcC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 78999999999999999999986 45679999987 6665 68999999999999999843 4 456766766543
No 242
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=6.6e-08 Score=73.13 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=58.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
.-|+|.|||++++++||.++|+.|. ....|++..++ .+.+ +-|||+|.+.+++++|++.+. ..||.++|...
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGFG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 3478999999999999999999885 34678888887 5665 589999999999999999553 45677777655
No 243
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.66 E-value=3.4e-08 Score=75.44 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=58.4
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
-++|.|||++++++||.++|+.|. ....|++..++ .|.+ +.|||+|.+.+++++|+.+.| ..||.++|...
T Consensus 38 ~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFSSCG-SINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPK 112 (124)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTS-CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEES
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 478999999999999999999986 44678899986 6665 699999999999999996445 45666666544
No 244
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.66 E-value=1.3e-07 Score=73.56 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=59.6
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
..|+|.|||++++++||.++|+.|. ....|++..++ .|++ +-|||+|.+.+++.+|++.+ | ..||.++|.-..
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERYG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3478899999999999999999986 34678898887 5664 68999999999999999943 4 557777776553
No 245
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.66 E-value=4e-08 Score=92.00 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=66.5
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|+|.|||+++|.++|.+||+.|.-+ ..|.|+++...|.+.|-|||.|.+.++|.+|+...|+..++...|.|.+
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPI-KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCe-eEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3589999999999999999999999544 3588888865578999999999999999999998888877777888764
No 246
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.65 E-value=1.3e-07 Score=70.18 Aligned_cols=73 Identities=18% Similarity=0.079 Sum_probs=59.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHH-HhCc-----cceEEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFR-LIGR-----KGRLYRLER 134 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~-~lg~-----~gRyv~i~~ 134 (227)
..++|.|||++++++||.++|+.|. ....|++..|+ .|.+ +-|||+|.+.+++++|++ +.|. .||.++|..
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEFG-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHHS-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 4478999999999999999999886 45678888887 4665 689999999999999998 3342 567777755
Q ss_pred cc
Q 027131 135 AE 136 (227)
Q Consensus 135 ~~ 136 (227)
..
T Consensus 93 a~ 94 (106)
T 2dgp_A 93 AD 94 (106)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 247
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.65 E-value=5.4e-08 Score=70.30 Aligned_cols=71 Identities=13% Similarity=0.065 Sum_probs=54.6
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEE
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLER 134 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~ 134 (227)
...+++.|||++++++||.++|+.+. ....|++..+ .|. .+-|||+|.+.+++++|++.+ | ..||.++|..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECG-HVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTS-CEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34579999999999999999999985 3346777764 455 468999999999999999943 4 4455555443
No 248
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.65 E-value=5.6e-08 Score=75.23 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=54.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
.-+++.||||+++++||+++|+.|......+.+.. +...|-|||+|.+++++++|++.+ | ..||.++|+..
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34899999999999999999998863333444422 223468999999999999999854 5 56888888765
No 249
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.65 E-value=2.2e-07 Score=67.19 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=52.9
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
+++.|||++++++||.++|+.+ ....|++. ...+-|||+|.+.+++++|++.+ | ..||.++|...
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~--~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 8 ILVKNLPQDSNCQEVHDLLKDY--DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp EEEESCCSSCCHHHHHHHTCSS--CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHhhC--CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 6889999999999999999999 55667763 22468999999999999999944 4 45777777654
No 250
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.64 E-value=6.1e-08 Score=70.94 Aligned_cols=70 Identities=7% Similarity=0.099 Sum_probs=55.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCC--C--Cc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRN--Y--MP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~--g--~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
++|.|||++++++||.++|+.|. ....|++..+++ | .+ +-|||+|.+.+++++|+..+ | ..||.++|...
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 8 LFIKNLNFSTTEETLKGVFSKVG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTS-CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 68899999999999999999886 336778887764 3 43 68999999999999999954 4 44666666544
No 251
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.64 E-value=1.4e-07 Score=72.27 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
.|+|.|||++++++||.++|+.|.- ...|++..++.|.+ +-|||+|.|.+++++|++.+ | ..|+-+.|....
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFGKHGP-ISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHHTSSC-CSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4688999999999999999999963 57799999886665 69999999999999999944 4 556777776554
No 252
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.64 E-value=5.3e-08 Score=74.26 Aligned_cols=70 Identities=14% Similarity=0.074 Sum_probs=53.4
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCc--ccCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRG--FCLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~r--f~gn~~v~lr 224 (227)
.++|+++|||+++|.+|+.++|+.|.-+. .|.+..+ .|-|+|.|.+.++|.+|+...+.. .+...+|.+.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~-~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTIC-YVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46899999999999999999999996443 2544422 367999999999999999875433 2444466654
No 253
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.1e-07 Score=72.26 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=53.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-C---CCc-ceEEEEeCCHHHHHHHHHHh-CccceEEEE
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-N---YMP-FAMMMQFPSFSAYDNAFRLI-GRKGRLYRL 132 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~---g~~-~eAfV~F~S~~d~~~AL~~l-g~~gRyv~i 132 (227)
+++.|||++++++||.++|+.|.-.. +++..++ . |++ +-|||+|.+++++++|++.+ +..|+.+.+
T Consensus 11 lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~ 82 (114)
T 2dnl_A 11 VFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLC 82 (114)
T ss_dssp EEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEE
T ss_pred EEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEe
Confidence 68899999999999999999987444 7777776 3 565 68999999999999999955 455665544
No 254
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.63 E-value=9.4e-08 Score=73.09 Aligned_cols=70 Identities=4% Similarity=0.014 Sum_probs=58.7
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
+++.|||++++++||.++|+.|. ....|++.+|+ .|++ |-|||+|.+.+++++|++.+ | ..||.++|+-.
T Consensus 9 lfV~nL~~~~te~~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 9 VTFARLNDNVRETFLKDMCRKYG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEECCCCCCCHHHHHHHHHhcC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 58899999999999999999886 34678999998 4776 58999999999999999944 5 46777777554
No 255
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=1.2e-07 Score=74.59 Aligned_cols=69 Identities=6% Similarity=0.016 Sum_probs=55.0
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC---cccCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR---GFCLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~---rf~gn~~v~lr 224 (227)
.++|+++|||+++|++||.++|+.|.-+ .+|.++.+ .|-|||.|.+.++|.+|+...+. .+.| .+|.+.
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V-~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G-r~l~V~ 102 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKV-TNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG-QPIYIQ 102 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCC-CEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT-BCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC-eEEEEE
Confidence 5689999999999999999999999644 35666644 36799999999999999987653 3444 466654
No 256
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.63 E-value=7.7e-08 Score=70.45 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=58.5
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEccc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAEQ 137 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~~ 137 (227)
.+++.|||++++++||.++|+.+. ....|++..++ .|++ +-|||+|.+.+++.+|++.+ | ..||.++|.-...
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVG-PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 368899999999999999999986 34568888887 5664 68999999999999999843 4 4567777765543
No 257
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.62 E-value=5.8e-08 Score=72.96 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=55.7
Q ss_pred CcEEEEeccCCC-CCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRI-AVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~-~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||++ +|++||.++|+.|.-+ ..|.+ +.|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v-~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRV-AGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCC-SEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCe-EEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 468999999999 9999999999998533 23444 346799999999999999987777666666776653
No 258
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.62 E-value=1e-07 Score=74.66 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=56.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLE 133 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~ 133 (227)
..|+|.|||++++++||.++|+.|. ....|++..|+ .|++ +-|||+|.+.+++++|++.+ | ..||.++|.
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTS-CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3468899999999999999999986 34678888887 5664 68999999999999999944 4 445655554
No 259
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=1.3e-07 Score=70.10 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=57.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLER 134 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~ 134 (227)
..+++.|||++++++||.++|+.+. ....|++..++ .|.+ +-|||+|.+.+++++|+.. .| ..|+.+.|..
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 4478999999999999999999986 34678888887 4665 6899999999999999994 44 4466555543
No 260
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.62 E-value=4.6e-08 Score=74.45 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=55.0
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
..+|++.|||+++|.+||.++|+.|.-+ ..|.+. +..|-|+|.|.++++|.+|+...|+.-+...+|.+.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSL-GRVLLP------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECC------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEe------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4589999999999999999999999533 123322 234679999999999999999877776666677764
No 261
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=7.3e-08 Score=70.47 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=53.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
-+.|++.|||+++|.+||.++|+.|.-+. .| .++...|+ -|+|.|.++++|.+|+. .|+..++...|.++
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVA-SV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEE-EE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeE-EE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 35799999999999999999999986443 23 55544343 89999999999999999 55555555566554
No 262
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=4.4e-08 Score=70.94 Aligned_cols=70 Identities=13% Similarity=0.179 Sum_probs=55.5
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|||+++|.+||.++|+.|.-+ ..|.+. .|-|+|.|.+.++|.+|+...|+..+..+.|.++.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRV-IECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCE-EEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCE-EEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999988532 123333 12699999999999999998777766666887764
No 263
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.61 E-value=3.9e-08 Score=73.09 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=55.2
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
..+|++.|||+++|.+||.++|+.|.-+. .|.+. .|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLE-RVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEE-EEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 35799999999999999999999884321 23332 24699999999999999998777777777887764
No 264
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.3e-07 Score=69.74 Aligned_cols=72 Identities=7% Similarity=0.037 Sum_probs=58.7
Q ss_pred eEEEEEeCCCCCCCHHHHH----HhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEE
Q 027131 62 VFYGKLLGISRQTLKSDII----NLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLER 134 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~----~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~ 134 (227)
..-+++.|||++++++||. ++|+.+. ....|++..|+++ .+-|||+|.+.+++++|++. .| ..||-++|..
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G-~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHG-KVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHS-CEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccC-cEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3448999999999999999 9999876 3456888888765 56899999999999999994 45 4678777765
Q ss_pred c
Q 027131 135 A 135 (227)
Q Consensus 135 ~ 135 (227)
.
T Consensus 87 a 87 (96)
T 2dgx_A 87 A 87 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 265
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.59 E-value=1.1e-07 Score=72.05 Aligned_cols=64 Identities=8% Similarity=0.037 Sum_probs=51.2
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLE 133 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~ 133 (227)
..+++.|||++++++||.++|+.+. ....|++. .+-|||+|.+.+++++|+..+ | ..||-+.|.
T Consensus 32 ~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 32 TRLFVRPFPLDVQESELNEIFGPFG-PMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp SEEEECSSCTTCCHHHHHHHHTTTS-CCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcC-CEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3478999999999999999999986 34566665 568999999999999999943 4 345655554
No 266
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=5.1e-08 Score=71.13 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=52.7
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCe-EEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEcc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDL-KVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERAE 136 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I-~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~~ 136 (227)
-+++.|||++++++||.++|+.+. ....| ++..++ .++.|||+|.+.+++++|++. .| ..||.++|....
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~i~~~~--~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQYG-VVESCEQVNTDS--ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHS-CEEEEEEECCSS--SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred EEEEEcCCCCCCHHHHHHHHHhcC-CeEEEEEeecCC--CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 378999999999999999999876 22345 355544 233399999999999999983 34 457777776554
No 267
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=7.2e-08 Score=71.27 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=57.9
Q ss_pred EEEEeCCCCCCCHHHHHHhcCC-CCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C---ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEG-CNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G---RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g-~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g---~~gRyv~i~~~ 135 (227)
.++|.|||++++++||.++|+. +. ....|++..|+.|.+ +-|||+|.+.+++++|++.+ | ..||.++|...
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 11 SLFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 3789999999999999999998 86 336788999887775 68999999999999999943 4 34666665444
No 268
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.59 E-value=5.8e-08 Score=69.26 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=56.3
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC--CC-CcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR--NY-MPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr--~g-~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
+++.|||++++++||.++|+.+. ....|++..++ ++ ..+.|||+|.+.+++++|+.. .| ..||.++|...
T Consensus 7 l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 7 VHIGRLTRNVTKDHIMEIFSTYG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 68999999999999999999986 33568887777 33 357999999999999999994 45 45666666544
No 269
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=3.8e-07 Score=66.99 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=52.7
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
-+++.|||++++++||.++|+.|.-.. +.+..+ ...+-|||+|.+.+++++|++.+ | ..||-++|...
T Consensus 21 ~l~V~nL~~~~t~~~l~~~F~~~G~v~--~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 21 DVYVGNLPRDARVSDLKRALRELGSVP--LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCC--SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred EEEEeCCCCcCcHHHHHHHHHhcCCEE--EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 478999999999999999999987543 455554 23468999999999999999843 4 45666666544
No 270
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.58 E-value=1.3e-07 Score=70.80 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=56.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLER 134 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~ 134 (227)
..++|.|||++++++||.++|+.|. ....|++..++ .|.+ +-|||+|.+.+++++|+.. .| ..||-+.|..
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFCDYG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGS-CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4589999999999999999999986 34567787776 5664 6899999999999999994 45 3466555543
No 271
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1.8e-07 Score=71.00 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=53.2
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc--CcccCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN--RGFCLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n--~rf~gn~~v~lr 224 (227)
.++|+++|||+++|.+|+.++|+.|.-+. .|.+..+ .|-|+|.|.+.++|.+|+...+ ...+...+|.+.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~-~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVT-NILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46899999999999999999999996442 3444432 3679999999999999998643 333444466654
No 272
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=2.4e-07 Score=69.29 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=52.3
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
..++|.|||++++++||.++|+.|. ....|++.. ++. .+-|||+|.+.+++++|++.+ | ..||.++|.-.
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYG-AIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3478999999999999999999986 223455533 444 468999999999999999744 4 44666666443
No 273
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.56 E-value=1.5e-07 Score=68.57 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=53.7
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
...+++.|||++++++||.++|+.|. .|... ...+.+ +-|||+|.+.+++++|+..+ | ..||-++|...
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g----~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDAL----EIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEE----EECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCC----cEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34578999999999999999999973 44444 445554 68999999999999999944 4 45676776554
No 274
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=4.6e-07 Score=68.75 Aligned_cols=68 Identities=4% Similarity=-0.011 Sum_probs=52.8
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh---C--ccceEEEEEEcc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI---G--RKGRLYRLERAE 136 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l---g--~~gRyv~i~~~~ 136 (227)
.++|+||||+++++||+++|+.+.- ...|.+..+ -+-|||+|.+.+++.+|++.+ + ..||-+.|.-..
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~-v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 17 VLHIRKLPGEVTETEVIALGLPFGK-VTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSC-EEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 3688999999999999999999873 345555433 468999999999999999954 2 457766665543
No 275
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.55 E-value=1.5e-07 Score=71.97 Aligned_cols=73 Identities=11% Similarity=0.168 Sum_probs=58.6
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
...|+|.|||++++++||.++|+.+. ....|++..++ .+.+ +-|||+|.+.+++++|++. .| ..|+.+.|.-.
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34589999999999999999999886 44678888887 6664 6999999999999999984 44 45666666543
No 276
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.55 E-value=9.8e-08 Score=73.28 Aligned_cols=70 Identities=17% Similarity=0.066 Sum_probs=54.3
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc--cCCceeEEE
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF--CLNNQVSVR 224 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf--~gn~~v~lr 224 (227)
.++|+++|||+++|++|+.+.|+.|.-+ .+|.++ +..|-|+|.|.+.++|.+|+...|+.. ++..+|.+.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V-~~v~i~------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPI-SYVVVM------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEE------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCE-EEEEEE------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4689999999999999999999998533 234443 123689999999999999999877653 445566553
No 277
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=7.5e-08 Score=71.00 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=46.0
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
.-+++.|||++++++||.++|+.+.- ...|++. ...+-|||+|.+.+++.+|+..+
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~-i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l 83 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGF-ILDFKHY----PEKGCCFIKYDTHEQAAVCIVAL 83 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSC-CSEEEEE----TTTTEEEEECSSHHHHHHHHHHH
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCC-EEEEEEe----cCCCEEEEEECCHHHHHHHHHHh
Confidence 34789999999999999999999863 3456665 22468999999999999999844
No 278
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.55 E-value=1.8e-07 Score=73.85 Aligned_cols=73 Identities=18% Similarity=0.084 Sum_probs=57.4
Q ss_pred CcEEEEeccCCCCCHHHHH----HccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 148 GKTVLLQNVPRIAVAEDVE----RFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~----~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
..+|++.|||++++.+|+. ++|+.|.-+. +|.+ ... |++.|-|+|.|.+.++|.+|+...|+..+...+|.+
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~-~v~i--~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDIL-DIVV--DLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEE--CCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE-EEEe--ccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 5689999999999999865 6899885331 2333 333 578899999999999999999887777666668776
Q ss_pred E
Q 027131 224 R 224 (227)
Q Consensus 224 r 224 (227)
.
T Consensus 105 ~ 105 (127)
T 2a3j_A 105 T 105 (127)
T ss_dssp E
T ss_pred E
Confidence 5
No 279
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.55 E-value=1.4e-07 Score=74.91 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=58.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
..|+|.|||++++++||.++|+.|. ....|++..++ .+.+ +-|||+|.+.+++++|+..+ | ..|+-++|.-.
T Consensus 40 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 40 CTLYVGNLSFYTTEEQIYELFSKSG-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999986 34578999988 5665 68999999999999999944 4 45666666554
No 280
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.54 E-value=6.4e-08 Score=71.48 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=56.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLER 134 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~ 134 (227)
.-+++.|||++++++||.++|+.|. ....|++..++.|.+ |-|||+|.+.+++++|+. .| ..|+.+.|..
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYG-SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3489999999999999999999986 346788999887765 689999999999999999 32 3456665543
No 281
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.53 E-value=5.5e-08 Score=69.39 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=49.0
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCC----CCC------CCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC--ccceEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGC----NLT------PDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLY 130 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~----~I~------~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv 130 (227)
..+++.|||++++++||.++|+.+ .+. ...|++..+ .+-|||+|.|.+++++|+.+.| ..||.+
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 347899999999999999999977 541 223333322 4789999999999999995445 345555
Q ss_pred EEE
Q 027131 131 RLE 133 (227)
Q Consensus 131 ~i~ 133 (227)
+|.
T Consensus 83 ~V~ 85 (87)
T 2hzc_A 83 KIR 85 (87)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 282
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.53 E-value=5.4e-08 Score=74.36 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=51.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccce-----EEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGR-----LYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gR-----yv~i~~~~ 136 (227)
|+|.|||++++++||.+||+.|. ....|++..+ +-|||+|.+.+++++|++.+ | ..|| |+++....
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G-~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAG-DVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGS-CEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 78999999999999999999885 3344555443 88999999999999999933 3 2343 46666554
Q ss_pred c
Q 027131 137 Q 137 (227)
Q Consensus 137 ~ 137 (227)
.
T Consensus 93 ~ 93 (115)
T 3beg_B 93 P 93 (115)
T ss_dssp -
T ss_pred C
Confidence 3
No 283
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.53 E-value=9.4e-08 Score=77.50 Aligned_cols=73 Identities=11% Similarity=0.101 Sum_probs=58.4
Q ss_pred CCcEEEEeccCC-CCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPR-IAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf-~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
++.+|++.|||+ +++.+||.++|+.|.-+ ..|.+..+. .|-|+|.|.+.++|.+|+...|+..++.++|.+..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i-~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDV-QRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCC-SEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCE-EEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 456899999999 99999999999998533 345555543 35699999999999999997666666666887753
No 284
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.52 E-value=8.2e-08 Score=70.77 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=53.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
..+++.|||++++++||.++|+.+.-..+ ++..++ .|++ +-|||+|.+.+++++|+++.| ..||.++|...
T Consensus 18 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 18 FNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 45899999999999999999998864333 233333 4554 689999999999999999444 45666666544
No 285
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.51 E-value=1.5e-06 Score=67.78 Aligned_cols=67 Identities=9% Similarity=0.059 Sum_probs=52.9
Q ss_pred EEEEeCCCCC-CCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh---C--ccceEEEEEEc
Q 027131 64 YGKLLGISRQ-TLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI---G--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s-~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l---g--~~gRyv~i~~~ 135 (227)
-++|+||||+ ++++||.++|+.+. ....|.+.-+ .+-|||+|.+.+++.+|++.+ + ..||-++|...
T Consensus 27 ~l~V~NLp~~~~te~~L~~lF~~fG-~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 27 VIHLSNLPHSGYSDSAVLKLAEPYG-KIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp EEEEESCCCSSCCSHHHHTTTTTTS-CCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred EEEEeCCCCccCCHHHHHHHHHhcC-CEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 3789999998 99999999999987 4456766422 368999999999999999943 2 46776666554
No 286
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.51 E-value=1.9e-07 Score=73.89 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=59.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
..++|.|||++++++||.++|+.|. ....|++..|+ .|++ |.|||+|.+.+++++|++.+ | ..||.++|....
T Consensus 71 ~~l~v~nl~~~~~~~~l~~~F~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 71 TSLKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHS-CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4478999999999999999999887 44678888886 6665 68999999999999999843 4 567877776553
No 287
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.51 E-value=1.2e-07 Score=72.49 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=53.5
Q ss_pred CCcEEEEeccCC-CCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCc---ccCCceeE
Q 027131 147 NGKTVLLQNVPR-IAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRG---FCLNNQVS 222 (227)
Q Consensus 147 ~g~~V~LrgLPf-~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~r---f~gn~~v~ 222 (227)
..++|+++|||+ ++|++||.++|+.|.-+ .+|.++.+. |-|||.|.++++|.+|+...|.. +.|. +|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V-~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr-~l~ 85 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVI-SNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGK-PVR 85 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCE-EEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTE-ECE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCE-EEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCc-EEE
Confidence 356899999999 99999999999999533 245554332 56999999999999999976643 4444 665
Q ss_pred EE
Q 027131 223 VR 224 (227)
Q Consensus 223 lr 224 (227)
+.
T Consensus 86 V~ 87 (102)
T 1x4d_A 86 VH 87 (102)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 288
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=5.9e-07 Score=67.47 Aligned_cols=59 Identities=5% Similarity=-0.050 Sum_probs=51.4
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l 123 (227)
-+++.|||++++++||.++|+.|. ....|++..++.|.+ +-|||+|.+.+++++|+..+
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 86 (114)
T 1x5o_A 27 NLYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 86 (114)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 478999999999999999999986 346688888887775 68999999999999999944
No 289
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=3.9e-07 Score=71.01 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=53.5
Q ss_pred CcEEEEeccCCC-CCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcC---cccCCceeEE
Q 027131 148 GKTVLLQNVPRI-AVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNR---GFCLNNQVSV 223 (227)
Q Consensus 148 g~~V~LrgLPf~-~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~---rf~gn~~v~l 223 (227)
..+|+++|||++ +|.+||.++|+.|.=+ .+|.|. +..|-|||.|.+.++|.+|+...|. .+.|. +|.+
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V-~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr-~l~V 96 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKI-KNYILM------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR-CVKV 96 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCC-SEEEEE------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS-CCEE
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCE-EEEEEe------cCCCEEEEEECCHHHHHHHHHHhccCCceECCE-EEEE
Confidence 568999999998 9999999999999633 245553 2347899999999999999987542 24444 6665
Q ss_pred E
Q 027131 224 R 224 (227)
Q Consensus 224 r 224 (227)
.
T Consensus 97 ~ 97 (112)
T 1x4f_A 97 D 97 (112)
T ss_dssp E
T ss_pred E
Confidence 4
No 290
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=8.6e-07 Score=67.46 Aligned_cols=68 Identities=10% Similarity=0.137 Sum_probs=52.8
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C----ccceEEEEEEcc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G----RKGRLYRLERAE 136 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g----~~gRyv~i~~~~ 136 (227)
.++|+|||++++++||+++|+.+. ....|.+..+ -+-|||+|.+++++.+|++.+ + ..||-++|.-..
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG-~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 17 VVHVRGLCESVVEADLVEALEKFG-TICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHHTTTS-CEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 368899999999999999999987 3334666543 368999999999999999943 2 457766665553
No 291
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=4.3e-07 Score=68.62 Aligned_cols=71 Identities=10% Similarity=0.169 Sum_probs=55.9
Q ss_pred EEEeCCCCCCCHHHHH---HhcCCCCCCCCCeEEEecCC-C---Cc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEE
Q 027131 65 GKLLGISRQTLKSDII---NLLEGCNLTPDDLKVNYTRN-Y---MP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLE 133 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~---~FF~g~~I~~d~I~~~ydr~-g---~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~ 133 (227)
|++.|||++++++||. ++|+.+. ....|++..+++ + ++ +-|||+|.+.+++++|++.+ | ..||.++|.
T Consensus 18 l~V~nLp~~~~~~~l~~~~~~F~~~G-~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 96 (111)
T 2cpi_A 18 VFVVGLSQRLADPEVLKRPEYFGKFG-KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 96 (111)
T ss_dssp EEEEEECTTTCCHHHHHSTTTTTTTS-CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHhhccC-CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEE
Confidence 6889999999999999 9999986 345677777663 2 22 58999999999999999954 4 457777776
Q ss_pred Ecc
Q 027131 134 RAE 136 (227)
Q Consensus 134 ~~~ 136 (227)
-..
T Consensus 97 ~a~ 99 (111)
T 2cpi_A 97 LGT 99 (111)
T ss_dssp SCC
T ss_pred ecc
Confidence 543
No 292
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=1.7e-06 Score=62.73 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=52.6
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
..+++.|||++++++||.++|+.+. ....|++.. +-|||+|.+.+++++|++.+ | ..||.++|...
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G-~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYG-PVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTS-CCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4478999999999999999999986 345566642 28999999999999999843 4 45677777655
No 293
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.47 E-value=4.8e-07 Score=69.14 Aligned_cols=68 Identities=10% Similarity=0.157 Sum_probs=54.0
Q ss_pred EEEEeCCCC-CCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C----ccceEEEEEEcc
Q 027131 64 YGKLLGISR-QTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G----RKGRLYRLERAE 136 (227)
Q Consensus 64 yv~lrgLP~-s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g----~~gRyv~i~~~~ 136 (227)
-++|.|||| +++++||.++|+.+. ....|.+..++ +-|||+|.+++++.+|++.+ + ..||-++|....
T Consensus 17 ~l~V~nLp~~~~te~dL~~lF~~fG-~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 17 VVHIMDFQRGKNLRYQLLQLVEPFG-VISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp EEEEESCCCSSSHHHHHHTTTGGGS-CEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred EEEEeCCCCCcCCHHHHHHHHHhcC-CEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 368999999 999999999999886 34566766544 46999999999999999944 2 467877776553
No 294
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=1.2e-07 Score=73.39 Aligned_cols=60 Identities=7% Similarity=0.016 Sum_probs=48.9
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
....+|+++|||+++|++||.++|+.|.-+ .+|.+..+ .|-|||.|.+.++|.+|+...+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V-~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKV-TNLLMLKG------KNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCE-EEEEEETT------TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEcC------CCEEEEEECCHHHHHHHHHHhc
Confidence 345689999999999999999999999533 24555543 3679999999999999999654
No 295
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=1.4e-06 Score=63.98 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=52.9
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
-+++.|||++++++||.++|+.|. ....|++..+ .+-|||+|.+.+++++|++.+ | ..||-++|...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYG-KAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTC-CCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcC-CeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 368899999999999999999987 3466777543 368999999999999999843 4 45666666544
No 296
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.46 E-value=6.7e-07 Score=76.43 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=59.2
Q ss_pred CcEEEEeccCCCCCHHHHH----HccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 148 GKTVLLQNVPRIAVAEDVE----RFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~----~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
.++|++.|||+++|.+||. ++|+.|.-+. .|.+.. . |+..|-|+|.|.+.++|.+|+...|+..+..+.|.+
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~-~v~~~~--~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQIL-DILVSR--S-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeE-EEEEcC--C-CCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 4689999999999999966 8999985332 344443 3 578899999999999999999887777777778877
Q ss_pred Ee
Q 027131 224 RV 225 (227)
Q Consensus 224 rv 225 (227)
..
T Consensus 85 ~~ 86 (282)
T 3pgw_A 85 QY 86 (282)
T ss_pred EE
Confidence 53
No 297
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.46 E-value=2.8e-07 Score=67.85 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=54.9
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~~ 136 (227)
+++.|||++++++||.++|+.+. ....|++..+ ..+-|||+|.+.+++++|++. .| ..|+-++|....
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYG-PLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHC-CCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 68899999999999999999886 4467887766 446899999999999999994 33 456767765543
No 298
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.46 E-value=3.5e-07 Score=76.35 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=57.6
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHhC--ccceEEEEE
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLIG--RKGRLYRLE 133 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~ 133 (227)
.|++.|||++++.+||..||+.|. ....|.+..+.+|++ |-|||+|.+++++++|+..++ ..||.+.|.
T Consensus 111 ~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~ 182 (193)
T 2voo_A 111 SVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 182 (193)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSC-CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEE
T ss_pred EEEecCCCCcCCHHHHHHHHhcCC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 378999999999999999999986 346788888887775 689999999999999999654 456666664
No 299
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.45 E-value=3.4e-07 Score=78.47 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=58.9
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
+..+|++.|||+++|.+||.++|+.|.-+ ..|.+. +..|-|+|.|.+.++|.+|+...|+..+....|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEP-SEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCC-SEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34589999999999999999999999644 245542 3457899999999999999998888877777887753
No 300
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=5.2e-07 Score=71.02 Aligned_cols=68 Identities=7% Similarity=0.057 Sum_probs=55.1
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C----ccceEEEEEEccc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G----RKGRLYRLERAEQ 137 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g----~~gRyv~i~~~~~ 137 (227)
++|.||||+++++||+.+|+.+. ....|.+..+ -+-|||+|.+.+++.+|++.+ + ..||-++|.-...
T Consensus 34 LfVgNLp~~vte~dL~~lF~~fG-~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 34 IHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTS-CCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 58899999999999999999987 4466777655 368999999999999999944 1 5678777765543
No 301
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.45 E-value=1.3e-06 Score=72.00 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=60.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 62 VFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 62 ~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
...|+|.|||++++++||.++|+.+. ....|++.+++.|.+ +-|||+|.+.+++.+|++.+ | ..|+.+.|.-+.
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTS-CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34589999999999999999999886 347899999886664 68999999999999999943 4 456767765543
No 302
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=1.1e-06 Score=63.37 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=51.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
.-+++.|||++++++||.++|+.+. ....|++. .+-|||+|.+.+++++|+..+ | ..||-++|...
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYG-KVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSS-CEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCC-CEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 4478999999999999999999986 33455554 358999999999999999843 4 45666666544
No 303
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.43 E-value=7.8e-07 Score=67.82 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=61.8
Q ss_pred CcEEEEeccCC-----CCCHHHHHHccCCCcccCCceEEEeecC-CCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 148 GKTVLLQNVPR-----IAVAEDVERFLSGCEYEASSISFMLRQS-LPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 148 g~~V~LrgLPf-----~~tkeEI~~FFsG~~i~p~~I~l~~d~~-~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
.+||.|+||.- +-+++||.+.|+.|--+ .+|.+..+.. .|++.|-|+|.|.+.++|.+|+...|++.++.+.|
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V-~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKV-GKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCE-EEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCE-EEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 46999999973 34899999999999643 3577777653 25788999999999999999999988888888788
Q ss_pred EEEe
Q 027131 222 SVRV 225 (227)
Q Consensus 222 ~lrv 225 (227)
.+..
T Consensus 87 ~v~~ 90 (105)
T 2pe8_A 87 KACF 90 (105)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 304
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=7.4e-07 Score=64.64 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=51.8
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC---ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG---RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg---~~gRyv~i~~~ 135 (227)
+++.|||++++++||.++|+.+.-....+.+. ..+-|||+|.+.+++++|+.. .| ..||-++|...
T Consensus 11 l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 11 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 68899999999999999999988534455542 235899999999999999984 45 45676666554
No 305
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.43 E-value=1.7e-07 Score=69.77 Aligned_cols=72 Identities=11% Similarity=0.043 Sum_probs=59.0
Q ss_pred EEEEEeCCCC------CCCHHHHHHhcCCCCCCCCCeEEEecCC-CCc-ceEEEEeCCHHHHHHHHHH-hC--ccc-eEE
Q 027131 63 FYGKLLGISR------QTLKSDIINLLEGCNLTPDDLKVNYTRN-YMP-FAMMMQFPSFSAYDNAFRL-IG--RKG-RLY 130 (227)
Q Consensus 63 ~yv~lrgLP~------s~~K~DI~~FF~g~~I~~d~I~~~ydr~-g~~-~eAfV~F~S~~d~~~AL~~-lg--~~g-Ryv 130 (227)
.+|.+.|||+ +++++||.++|+.|. ....|++.+|+. |++ |-|||+|.+.+++++|++. .| ..| |-+
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAG-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcC-CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 4589999999 999999999999987 456889999984 775 6899999999999999984 34 445 666
Q ss_pred EEEEc
Q 027131 131 RLERA 135 (227)
Q Consensus 131 ~i~~~ 135 (227)
+|...
T Consensus 86 ~V~~a 90 (100)
T 3ns6_A 86 FLYTM 90 (100)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 66544
No 306
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.42 E-value=2.5e-07 Score=77.70 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=57.4
Q ss_pred CCCcEEEEeccCC-CCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 146 YNGKTVLLQNVPR-IAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 146 ~~g~~V~LrgLPf-~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
.+..+|++.|||+ +++++||.+||+.|.-+ .+|.+..+. .|-|+|.|.+.++|.+|+...|+..+..++|.+.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i-~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDV-QRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCE-EEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCe-EEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456899999999 99999999999988432 245565553 3569999999999999998666666666687775
No 307
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=2.1e-06 Score=64.41 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=52.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCC-CCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLT-PDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~-~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
..++|.|||++++++||.++|+.+.-. .-.|.+... .|. .+-|||+|.+.+++++|+..+ | ..|+.++|.-.
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 26 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 347899999999999999999988532 222333332 555 479999999999999999843 4 45666666544
No 308
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=4.4e-07 Score=69.79 Aligned_cols=63 Identities=24% Similarity=0.274 Sum_probs=51.9
Q ss_pred EEEEeccCCCCCHHH----HHHccCCC--cccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 150 TVLLQNVPRIAVAED----VERFLSGC--EYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 150 ~V~LrgLPf~~tkeE----I~~FFsG~--~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
+|+++|||+++++++ +.+.|+.| +|. +| - | |-|+|+|.+.++|.+|+...|+..+..++|.+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl--~V------t-g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL--SI------T-G---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE--EC------C-T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE--EE------e-c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 499999999999888 55899999 344 23 1 1 56999999999999999988888887778887
Q ss_pred E
Q 027131 224 R 224 (227)
Q Consensus 224 r 224 (227)
.
T Consensus 79 ~ 79 (96)
T 2diu_A 79 S 79 (96)
T ss_dssp E
T ss_pred E
Confidence 4
No 309
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=3.8e-07 Score=67.89 Aligned_cols=74 Identities=16% Similarity=0.077 Sum_probs=56.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEE-ecC-CCCc-ceEEEEeCCHHHHHHHHHHh---C--ccceEEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVN-YTR-NYMP-FAMMMQFPSFSAYDNAFRLI---G--RKGRLYRLER 134 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~-ydr-~g~~-~eAfV~F~S~~d~~~AL~~l---g--~~gRyv~i~~ 134 (227)
.-+++.|||++++++||.++|+.+.-....|++. .++ .|++ +-|||+|.+.+++.+|++.+ + ..||-++|..
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~ 88 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW 88 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEE
Confidence 4478999999999999999999885324456665 455 4454 68999999999999999954 2 4577777755
Q ss_pred cc
Q 027131 135 AE 136 (227)
Q Consensus 135 ~~ 136 (227)
..
T Consensus 89 a~ 90 (109)
T 2dis_A 89 AE 90 (109)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 310
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=4.7e-07 Score=65.18 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=43.9
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHH
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDA 207 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~A 207 (227)
.+.|++.|||+++|++||.++|+.|.-+ ..|.+..+ +.|-|+|.|.++++|.+|
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~-----~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDV-MDVFIPKP-----FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCC-CEEECCSS-----CCSCCEEECSCHHHHHHT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCe-eEEEEecC-----CCCEEEEEECCHHHHHHH
Confidence 4689999999999999999999999533 24555443 457899999999999865
No 311
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.39 E-value=2.6e-07 Score=72.76 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=57.0
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
|+|.|||++++++||.++|+.+. ....|++..++ .+.+ +-|||+|.+.+++++|++.+ | ..||.++|.-.
T Consensus 50 l~V~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 50 LKVDNLTYRTSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp EEEECCCSSCHHHHHHHHHGGGS-CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 78999999999999999999987 45678888887 5665 68999999999999999843 4 45666666543
No 312
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.38 E-value=1.6e-07 Score=67.65 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=56.1
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
+++.|||++++++||.++|+.+. ....|++..++ .|++ +-|||+|.+.+ +.+|+..+ | ..||-++|....
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQFG-KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHHHT-CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred EEECCCCCCCCHHHHHHHHHhcC-CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 78999999999999999999886 45678888887 4665 68999999999 99999944 3 456666665543
No 313
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=4.6e-07 Score=66.14 Aligned_cols=67 Identities=7% Similarity=0.065 Sum_probs=51.4
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCcceEEEEeCCHHHHHHHHHHhC--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv~i~~~ 135 (227)
-+++.|||++++++||.++|+.|.-.. .| .+++ .|+ -|||+|.+.+++++|+.+.| ..||.++|...
T Consensus 10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v--~~~~~~g~--~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 10 SVFVSGFPRGVDSAQLSEYFLAFGPVA-SV--VMDKDKGV--FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp EEEEECCCTTCCHHHHHHHGGGTSCEE-EE--EECSSSCC--EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeE-EE--EEcCCCCc--EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 468899999999999999999886432 24 5555 444 99999999999999999334 44666666533
No 314
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.36 E-value=9.3e-07 Score=64.72 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=50.3
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--cc--ceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RK--GRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~--gRyv~i~~~ 135 (227)
+++.|||++++++||.++|+.+.- ...|++..+ .+-|||+|.+.+++++|++. .| .. ||.++|.-.
T Consensus 20 l~V~nlp~~~t~~~l~~~F~~~G~-v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 20 LWVGGLGPNTSLAALAREFDRFGS-IRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSC-EEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 678999999999999999999872 344555432 45899999999999999994 34 33 566665543
No 315
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=8.1e-07 Score=63.12 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=45.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
+++.|||++++++||.++|+.+.- ...|++..+ .+-|||+|.+.+++++|++.+
T Consensus 15 l~V~~l~~~~t~~~l~~~f~~~G~-i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 15 LYVGGLGDTITETDLRNHFYQFGE-IRTITVVQR----QQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp EEEECCTTTSCHHHHHHHHHTTSC-EEEEEEEGG----GTEEEEEESSHHHHHHHHHTT
T ss_pred EEEcCCCCCCCHHHHHHHHHhCCC-EeEEEEECC----CCEEEEEECCHHHHHHHHHHh
Confidence 688999999999999999998862 345666543 368999999999999999944
No 316
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=8.2e-06 Score=59.80 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=49.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCC-CCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNL-TPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I-~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
..++|.|||++++++||.++|+.+.- ....|++ ..+-|||+|.+.+++.+|+..+ | ..||-++|...
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 16 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34789999999999999999999842 1122322 1348999999999999999944 4 45676666544
No 317
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.35 E-value=9.5e-07 Score=65.43 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=48.7
Q ss_pred EEEeCCCC-CCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEE
Q 027131 65 GKLLGISR-QTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLER 134 (227)
Q Consensus 65 v~lrgLP~-s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~ 134 (227)
+++.|||+ +++++||.++|+.+.- ...|++ ..+-|||+|.+.+++++|+..+ | ..||-++|.-
T Consensus 25 l~V~nLp~~~~t~~~L~~~F~~~G~-v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 25 LFIGNLPLKNVSKEDLFRIFSPYGH-IMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp EEEESCCSSCCCHHHHHHHHGGGSC-EEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCC-EEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 57899999 9999999999998852 233444 1468999999999999999944 4 3466666644
No 318
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.33 E-value=1.1e-06 Score=70.38 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=54.6
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.|++.||||.+|.+++.+.|+.|-=+ ..|.+..+.. -+.|+|+|.+.++|.+|+...|+.-+.+..-.|||
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V-~~V~i~~~~~----gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTV-LKIITFTKNN----QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCE-EEEEEEEETT----EEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCE-EEEEEEcCCC----CcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 37799999999999999999999644 3566654422 13499999999999999998888766553344554
No 319
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=2.2e-06 Score=62.82 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=55.4
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
....+|++.|| ++|++||.++|+.|.-+ ..|.+ . ++.|-|+|.|.+.++|.+|+...|+..+....|.+..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i-~~v~i--~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNI-IDLSM--D----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCE-EEEEE--E----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCE-EEEEe--c----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568999995 99999999999999432 13333 2 4667899999999999999988777776666777653
No 320
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.32 E-value=1.4e-06 Score=70.17 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=57.3
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEE
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLER 134 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~ 134 (227)
.|+|.|||++++.+||..+|+.|. ....|++..++ .|.+ +.|||+|.+.+++.+|+.. .| ..|+-+.|.-
T Consensus 74 ~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 74 ILFVTSIHEEAQEDEIQEKFCDYG-EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGS-CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 389999999999999999999986 44678888886 6665 6899999999999999984 34 4566666543
No 321
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=1.1e-06 Score=63.20 Aligned_cols=67 Identities=7% Similarity=-0.032 Sum_probs=49.4
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hCccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IGRKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg~~gRyv~i~~~ 135 (227)
+++.|||++++++||.++|+.+.- ...|++..+ ..+-|||+|.+.+++++|... +...|+-+++...
T Consensus 8 l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 8 VFVGRCTGDMTEDELREFFSQYGD-VMDVFIPKP---FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNA 75 (88)
T ss_dssp EEEESCCSSSCHHHHHHHSTTTSC-CCEEECCSS---CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCC-eeEEEEecC---CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEec
Confidence 688999999999999999999862 345666543 346899999999999876552 1124566666544
No 322
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.32 E-value=1.3e-06 Score=66.92 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=52.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C----ccceEEEEEEcc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G----RKGRLYRLERAE 136 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g----~~gRyv~i~~~~ 136 (227)
++++|||++++++||...|+.+. ....|.+.-+ -+-|||+|++.+++.+|++.+ | ..||-++|.-+.
T Consensus 24 l~V~NLp~~~te~~L~~lF~~fG-~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 24 VHIRGLIDGVVEADLVEALQEFG-PISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGS-CEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred EEEeCCCCCCCHHHHHHHHhccC-CEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 68999999999999999999886 3345666532 258999999999999999955 3 247777775543
No 323
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.65 E-value=7.3e-08 Score=73.05 Aligned_cols=72 Identities=10% Similarity=0.074 Sum_probs=56.8
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCC-------CeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEE
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPD-------DLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYR 131 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d-------~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~ 131 (227)
.|+|.|||++++++||.++|+.|.-..+ .|++..|+ .|++ +.|||+|.+.+++++|++.+ | ..||.++
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (116)
T 2lcw_A 9 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIK 88 (116)
Confidence 4789999999999999999999975433 18888886 5665 68999999999999999943 4 4466666
Q ss_pred EEEc
Q 027131 132 LERA 135 (227)
Q Consensus 132 i~~~ 135 (227)
|...
T Consensus 89 V~~a 92 (116)
T 2lcw_A 89 VSFA 92 (116)
Confidence 6444
No 324
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=1.1e-06 Score=65.86 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=52.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
.-+++.|||++++++||.++|+.+. ....|++..+ .+-|||+|.+.+++.+|+..+ | ..|+-++|.-.
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFG-QIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHS-CEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 3478899999999999999999886 3456666654 468999999999999999743 4 34565565443
No 325
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.29 E-value=2.2e-06 Score=67.78 Aligned_cols=60 Identities=18% Similarity=-0.011 Sum_probs=48.1
Q ss_pred EEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcce-eEEEEcCCHHHHHHHHHHhcCcccC
Q 027131 151 VLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIK-WATVRFPSQTQAMDAFIRKNRGFCL 217 (227)
Q Consensus 151 V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptG-eA~V~F~S~e~A~~Al~~~n~rf~g 217 (227)
|++.|||+.+|++++.+.|+.|.=+ ..|.+... .| .|+|+|.+.++|.+|+..+|+.-+.
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V-~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~ 88 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKV-QRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIY 88 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCE-EEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCB
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCE-EEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 6689999999999999999999644 24555322 27 5999999999999999977766543
No 326
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.28 E-value=2.8e-06 Score=71.26 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=57.7
Q ss_pred CCcEEEEeccC-CCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEE
Q 027131 147 NGKTVLLQNVP-RIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVR 224 (227)
Q Consensus 147 ~g~~V~LrgLP-f~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lr 224 (227)
++.+|++.||| ++++.+|+.+.|+.|.-+ .+|.+..+ ..|-|+|+|.+.++|.+|+...|+..+..++|.+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v-~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNV-EKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCE-EEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCe-EEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45689999999 899999999999999533 24555443 23679999999999999999777777776677765
No 327
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.28 E-value=8.3e-07 Score=73.82 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=54.2
Q ss_pred EEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC--ceeEE
Q 027131 150 TVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN--NQVSV 223 (227)
Q Consensus 150 ~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn--~~v~l 223 (227)
.|++.|||+++|++|+.+.|+.|.-+ ..|.+..+ ++.|-|||+|.+.++|.+|+...|++-+.. ..|.+
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~fG~V-~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKFGTV-LKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHHSCE-EEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred EEEEeCcCCCCCHHHHHHHHHhcCCE-EEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 37799999999999999999999644 24555433 345789999999999999999877776633 45544
No 328
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.24 E-value=1.4e-06 Score=62.88 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=50.0
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
+++.|||++++++||.++|+.+.- ...|++. .+-|||+|.+.+++++|+..+ | ..||-++|...
T Consensus 12 l~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 12 IFVGNVSAACTSQELRSLFERRGR-VIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSC-EEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred EEEeCCCCCCCHHHHHHHHHcCCC-EEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 689999999999999999998762 3445553 228999999999999999944 4 45666666554
No 329
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.23 E-value=8.7e-06 Score=60.89 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=51.1
Q ss_pred EEEEeCCCCC-CCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 64 YGKLLGISRQ-TLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s-~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
-++|.|||++ ++++||.++|+.+. ....|++ ..+-|||+|.+.+++++|++.+ | ..|+-++|...
T Consensus 29 ~l~V~nl~~~~~t~~~l~~~F~~~G-~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 29 RVFIGNLNTALVKKSDVETIFSKYG-RVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp EEEECSCCCSSCCHHHHHHHHGGGS-CCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCC-CeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999 99999999999886 3445666 2468999999999999999743 4 44666666544
No 330
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.21 E-value=1.2e-06 Score=66.41 Aligned_cols=70 Identities=13% Similarity=0.041 Sum_probs=57.7
Q ss_pred cEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 149 KTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 149 ~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.-++++||++++|++++.+.|.-+.=+- ++.+. .+.|=|+|.|.+++||.+|+...|..-++++.|.+..
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~-~~~l~------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLV-SFHPY------LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEE-EEEEE------TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEE-EEEEc------CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 3589999999999999999999884221 24442 2567899999999999999999999999988888753
No 331
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.20 E-value=2.2e-06 Score=62.68 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=43.0
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHH
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMD 206 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~ 206 (227)
...+|++.|||+++|.+||.++|+.|.-+ .+|.+..+ +.|-|+|.|.++++|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i-~~v~i~~~-----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEV-VDVFIPKP-----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEECCSS-----CCSEEEEEESCHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCE-EEEEEeeC-----CCCEEEEEECCHHHHHH
Confidence 34689999999999999999999999532 23444443 55789999999999984
No 332
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=1.1e-06 Score=67.97 Aligned_cols=66 Identities=8% Similarity=0.048 Sum_probs=52.2
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C----ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G----RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g----~~gRyv~i~~~ 135 (227)
++|.||||+++++||+++|+.+. ....|.+..+ .+-|||+|.+++++.+|++.+ + ..||-++|...
T Consensus 19 LfV~nLp~~vte~dL~~lF~~fG-~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 19 IHIRKLPIDVTEGEVISLGLPFG-KVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp EEECSCCTTSCHHHHHHHHHHHC-CEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC-CEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 68899999999999999999886 3456666654 368999999999999999954 2 34665555444
No 333
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.18 E-value=3e-06 Score=66.24 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=52.9
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCC-------CeEEEecCCCC-cceEEEEeCCHHHHHHHHHH-hC--ccceEEEE
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPD-------DLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRL 132 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d-------~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i 132 (227)
.++|.|||++++.+||..+|+.+.-... +|++. ..|+ .|-|||+|.+.+++.+|+.. .| ..||.+.|
T Consensus 47 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp EEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4799999999999999999999863322 23333 3455 46999999999999999994 45 45676666
Q ss_pred EEc
Q 027131 133 ERA 135 (227)
Q Consensus 133 ~~~ 135 (227)
.-.
T Consensus 125 ~~a 127 (143)
T 3egn_A 125 QFA 127 (143)
T ss_dssp EEC
T ss_pred EEC
Confidence 544
No 334
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.18 E-value=3.2e-06 Score=62.56 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=50.1
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
++|.|||++++++||.++|+.+.- ...|++. .+-|||+|.+.+++++|+.. .| ..|+.++|...
T Consensus 14 l~V~nl~~~~t~~~l~~~F~~~G~-i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 14 LFVRNLANTVTEEILEKAFSQFGK-LERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHSC-EEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 688999999999999999998752 2334443 23899999999999999994 34 45777777554
No 335
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.18 E-value=2.3e-06 Score=64.96 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=50.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
.-+++.|||++++++||.++|+.|.- ...|.+..+ .+-|||+|.+.+++++|+..+ | ..||-+.|.-.
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGS-LGRVLLPEG----GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSC-EEEEECCSS----SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44899999999999999999999862 233444322 246999999999999999943 4 45666665443
No 336
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.17 E-value=2.5e-06 Score=62.45 Aligned_cols=67 Identities=7% Similarity=-0.025 Sum_probs=48.3
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hCccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IGRKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg~~gRyv~i~~~ 135 (227)
+++.||||+++++||.++|+.+. ....|++..+ ..|-|||+|.+.++++++... +.-.||-+.+...
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G-~i~~v~i~~~---srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYG-EVVDVFIPKP---FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNA 81 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTS-CEEEEECCSS---CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHhccC-CEEEEEEeeC---CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEc
Confidence 58899999999999999999986 2344555543 346899999999998854431 1123566666544
No 337
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=5.5e-06 Score=60.67 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=49.1
Q ss_pred EEEEeCCCC-CCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEE
Q 027131 64 YGKLLGISR-QTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLE 133 (227)
Q Consensus 64 yv~lrgLP~-s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~ 133 (227)
-+++.|||+ +++++||.++|+.+. ....|++- .+-|||+|.+.+++++|+..+ | ..||.++|.
T Consensus 12 ~l~V~nlp~~~~t~~~l~~~F~~~G-~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 12 RLFIGNLPLKNVSKEDLFRIFSPYG-HIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp EEEEESSTTSCCCHHHHHHHHTTTC-CCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcC-CEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 368899999 999999999999986 23446652 468999999999999999943 4 345655543
No 338
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=6.2e-06 Score=62.40 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=57.5
Q ss_pred CCcEEEEeccCCCC-----------CHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc
Q 027131 147 NGKTVLLQNVPRIA-----------VAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF 215 (227)
Q Consensus 147 ~g~~V~LrgLPf~~-----------tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf 215 (227)
..+||.|+||.... +++||.++|+.|.-+. .|.+ .+. .+.|-|+|.|.++++|.+|+...|++.
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~-~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIR-KLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCS-EEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEe-EEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 45699999994433 2689999999996442 4544 442 477999999999999999999888888
Q ss_pred cCCceeEEEe
Q 027131 216 CLNNQVSVRV 225 (227)
Q Consensus 216 ~gn~~v~lrv 225 (227)
+...+|.+..
T Consensus 89 ~~gr~l~v~~ 98 (112)
T 2dit_A 89 FGGRQITAQA 98 (112)
T ss_dssp ETTEECEEEE
T ss_pred ECCcEEEEEE
Confidence 8887887764
No 339
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.14 E-value=4.1e-06 Score=68.05 Aligned_cols=75 Identities=9% Similarity=0.122 Sum_probs=60.0
Q ss_pred EEEEecc----CCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCC----HHH----HHHHHH--HhcCcc
Q 027131 150 TVLLQNV----PRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPS----QTQ----AMDAFI--RKNRGF 215 (227)
Q Consensus 150 ~V~LrgL----Pf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S----~e~----A~~Al~--~~n~rf 215 (227)
-|++.|| |+.++.++|..+|+-|. .-..+.+.+|+..|+|.|=|+|.|.+ +++ |.+|+. .+|+..
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fG-eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKKYG-EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHTTS-CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 5899999 99999999999999996 44689999999999999999999996 434 788877 445544
Q ss_pred cCCceeEEEe
Q 027131 216 CLNNQVSVRV 225 (227)
Q Consensus 216 ~gn~~v~lrv 225 (227)
.+.+.|.+.+
T Consensus 83 I~Gr~irV~l 92 (136)
T 2j8a_A 83 IMGFKFEVIL 92 (136)
T ss_dssp ETTEEEEEEE
T ss_pred ecCcEEEEEE
Confidence 4444766653
No 340
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.12 E-value=2.3e-06 Score=60.77 Aligned_cols=58 Identities=9% Similarity=-0.033 Sum_probs=46.5
Q ss_pred EEEEeCCCCCC------CHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh
Q 027131 64 YGKLLGISRQT------LKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 64 yv~lrgLP~s~------~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l 123 (227)
.+++.|||+++ +++||.++|+.+.- ...|++. ...|++ |-|||+|.+.+++++|++.+
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~-i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~l 67 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK-ITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNA 67 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCC-EEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTS
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCC-eEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHh
Confidence 36899999999 78999999999873 3345554 335554 68999999999999999944
No 341
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.12 E-value=1.5e-06 Score=66.10 Aligned_cols=76 Identities=20% Similarity=0.079 Sum_probs=59.6
Q ss_pred cEEEEecc--CCC--------CCHHHHHHccCCCcccCCceEEEeecCC--CCcceeEEEEcCCHHHHHHHHHHhcCccc
Q 027131 149 KTVLLQNV--PRI--------AVAEDVERFLSGCEYEASSISFMLRQSL--PDSIKWATVRFPSQTQAMDAFIRKNRGFC 216 (227)
Q Consensus 149 ~~V~LrgL--Pf~--------~tkeEI~~FFsG~~i~p~~I~l~~d~~~--g~ptGeA~V~F~S~e~A~~Al~~~n~rf~ 216 (227)
+||.|+|+ |-. .+++||.+-|+.|--+ .+|.+..+..+ +++.|-|+|.|.+.++|.+|+...|++..
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V-~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLV-KSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCE-EEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCE-EEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 58899998 433 3568999999988644 35666666543 35789999999999999999999999999
Q ss_pred CCceeEEEe
Q 027131 217 LNNQVSVRV 225 (227)
Q Consensus 217 gn~~v~lrv 225 (227)
+.++|.+..
T Consensus 85 ~GR~i~v~~ 93 (105)
T 3v4m_A 85 ANRVVVTKY 93 (105)
T ss_dssp TTEECEEEE
T ss_pred CCCEEEEEE
Confidence 888888754
No 342
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.11 E-value=1.6e-05 Score=61.45 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=54.8
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
...+|++.|+ ++|.+||.++|+.|.-+ ..|.+. ++.|-|+|.|.+.++|.+|+...|+.-+....|.+..
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I-~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNI-IDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCC-SCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCE-EEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4568999995 79999999999999543 245553 4567899999999999999987666655666777653
No 343
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.10 E-value=5.1e-06 Score=77.70 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=58.5
Q ss_pred EEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
.|+|.|||++++++||..||+.|. ....|+|.+|+ .|.+ +-|||+|.+.+++.+|+..| | ..|+.+.|.-.
T Consensus 104 ~lfV~nL~~~~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 104 TLFVARVNYDTTESKLRREFEVYG-PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcC-CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 489999999999999999999986 34568888887 6664 69999999999999999844 4 45677776544
No 344
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.10 E-value=6.8e-07 Score=67.84 Aligned_cols=69 Identities=9% Similarity=0.083 Sum_probs=53.9
Q ss_pred eccCCCCCHHHHHHcc------------CCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 154 QNVPRIAVAEDVERFL------------SGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 154 rgLPf~~tkeEI~~FF------------sG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
-|||++++.+||.+.| +.|.-+ .+|.+..+.. |++.|-|+|.|.++++|.+|+...|++.++.++|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V-~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEV-EEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCce-EEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 4677778888777666 777533 2467776766 5899999999999999999999888887777677
Q ss_pred EEE
Q 027131 222 SVR 224 (227)
Q Consensus 222 ~lr 224 (227)
.+.
T Consensus 99 ~v~ 101 (104)
T 1jmt_A 99 HAE 101 (104)
T ss_dssp CEE
T ss_pred EEE
Confidence 654
No 345
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.08 E-value=4.5e-06 Score=62.34 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=53.9
Q ss_pred EEEEeCCCCCC------CHHHHHHhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccce-EEEE
Q 027131 64 YGKLLGISRQT------LKSDIINLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGR-LYRL 132 (227)
Q Consensus 64 yv~lrgLP~s~------~K~DI~~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gR-yv~i 132 (227)
.+++.|||+++ +++||..+|+.+.- ...|++. ...|++ |-|||+|.+.+++.+|+..+ | ..|| -++|
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~-v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK-ITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSC-EEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCC-EEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 47899999999 88999999998862 3345555 335664 68999999999999999954 4 4566 6666
Q ss_pred EEc
Q 027131 133 ERA 135 (227)
Q Consensus 133 ~~~ 135 (227)
...
T Consensus 95 ~~a 97 (105)
T 2nlw_A 95 NLF 97 (105)
T ss_dssp ECS
T ss_pred EEc
Confidence 544
No 346
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.06 E-value=5.4e-06 Score=65.31 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=52.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEE
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLER 134 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~ 134 (227)
.-+++.|||++++++||.++|+.+. ....|++..+ ..+-|||+|.+.+++++|+.. .| ..||-++|.-
T Consensus 74 ~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 74 CKVYVGNLGNNGNKTELERAFGYYG-PLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp CEEEEESCCSCCSCHHHHHHHHHHS-CEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhC-CEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3478999999999999999999885 3355666554 346899999999999999994 35 3466555543
No 347
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.01 E-value=3.6e-06 Score=61.13 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=51.2
Q ss_pred EEEEeCCCCCCCHHHHH----HhcCCCCCCCCCeEEEecCCCC-cceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 64 YGKLLGISRQTLKSDII----NLLEGCNLTPDDLKVNYTRNYM-PFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~----~FF~g~~I~~d~I~~~ydr~g~-~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
.+++.|||++++++||. ++|+.+. ....|++. +.|. .+-|||+|.|.+++.+|++. .| ..||.++|...
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G-~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFG-QILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGS-CEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCC-CEEEEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36889999999999999 9999886 22334443 2334 36899999999999999994 45 34666666544
No 348
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.00 E-value=1e-05 Score=63.63 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=50.4
Q ss_pred EEEeCCCCCCCHHHHH----HhcCCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDII----NLLEGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~----~FF~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
+++.||||+++++|++ .+|+.+.-. .+|.+ .+++++ |-|||+|.+.+++.+|++.+ | ..||-++|.-.
T Consensus 32 LfV~nL~~~~~e~~L~~~L~~~F~~~G~I-~~v~i--~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 32 VLITNINPEVPKEKLQALLYALASSQGDI-LDIVV--DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCE-EEEEE--CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhccCCCe-EEEEe--ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 6889999999999876 689888622 23443 445554 68999999999999999844 4 45676666543
No 349
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=4.1e-05 Score=60.67 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=55.3
Q ss_pred CCcEEEEeccCCC-CCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCC-HHHHHHHHHHhc---CcccCCcee
Q 027131 147 NGKTVLLQNVPRI-AVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPS-QTQAMDAFIRKN---RGFCLNNQV 221 (227)
Q Consensus 147 ~g~~V~LrgLPf~-~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S-~e~A~~Al~~~n---~rf~gn~~v 221 (227)
.|.+|++.|||.+ ++.+||..+|+.|. .|.-+ +..-|+. +|+|+|.+ .++|.+|+...| -..++ ..+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G----~V~~V-d~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g-~~~ 88 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHG----EIKWI-DFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRN-KEV 88 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSC----CEEEE-ECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTS-SSE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcC----CEEEE-EEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeC-cEE
Confidence 4778999999999 99999999999983 34333 2222333 69999999 899999999863 33555 689
Q ss_pred EEEec
Q 027131 222 SVRVL 226 (227)
Q Consensus 222 ~lrvl 226 (227)
++++|
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99987
No 350
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.99 E-value=2.5e-05 Score=61.69 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=54.6
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcc-eEEEEeCCHHHHHHHHHHh-Cc--cc--eEEEEE
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPF-AMMMQFPSFSAYDNAFRLI-GR--KG--RLYRLE 133 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~-eAfV~F~S~~d~~~AL~~l-g~--~g--Ryv~i~ 133 (227)
....+|++.||||+++++||.+.|+.+. ....|++ +++ .| .|||+|.+.+++.+|++.| |. .| +-++|.
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG-~V~~v~i-~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVG-KVQRIVI-FKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTS-CEEEEEE-EES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcC-CEEEEEE-EeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 4556689999999999999999999986 3456666 333 37 5999999999999999944 63 23 466665
Q ss_pred Ec
Q 027131 134 RA 135 (227)
Q Consensus 134 ~~ 135 (227)
..
T Consensus 98 ~A 99 (124)
T 2e5i_A 98 YA 99 (124)
T ss_dssp CC
T ss_pred Ee
Confidence 44
No 351
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.99 E-value=1.8e-05 Score=61.74 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=61.2
Q ss_pred CcEEEEeccC-----CCCCHHHHHHccCCCcccCCceEEEeecC----CCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 148 GKTVLLQNVP-----RIAVAEDVERFLSGCEYEASSISFMLRQS----LPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 148 g~~V~LrgLP-----f~~tkeEI~~FFsG~~i~p~~I~l~~d~~----~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
.+||.|+|+- .+-.++||...|+-|--+ .+|.+..+.. .+++.|-|+|.|.+.++|.+|+...|+|..+.
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V-~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAV-NRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCE-EEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCE-eEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4699999994 233578999999988644 3577777643 24567999999999999999999999999888
Q ss_pred ceeEEEe
Q 027131 219 NQVSVRV 225 (227)
Q Consensus 219 ~~v~lrv 225 (227)
++|.+..
T Consensus 99 R~i~v~~ 105 (118)
T 3ue2_A 99 RKVVAEV 105 (118)
T ss_dssp EECEEEE
T ss_pred cEEEEEE
Confidence 8887754
No 352
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=3.8e-06 Score=65.77 Aligned_cols=61 Identities=8% Similarity=0.173 Sum_probs=48.6
Q ss_pred CcEEEEe--ccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcc
Q 027131 148 GKTVLLQ--NVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGF 215 (227)
Q Consensus 148 g~~V~Lr--gLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf 215 (227)
...+++. |||+++|.+|+.+.|+.|.-+ ..|.+..+ .|=|+|.|.++++|.+|+...|++-
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v-~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLV-DALLMPPN------KPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCE-EEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCe-EEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 4579995 499999999999999988644 23444322 2679999999999999999888763
No 353
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.96 E-value=6.8e-06 Score=62.24 Aligned_cols=58 Identities=9% Similarity=-0.017 Sum_probs=47.2
Q ss_pred CeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 61 GVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 61 ~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
+..++.++||++.+++++++.+|..+. +...+++.. .-|-|||+|.+++++++|++.|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G-~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHG-PLVSFHPYL----NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHS-CEEEEEEET----TTTEEEEEESSHHHHHHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhC-CEEEEEEcC----CCcEEEEEECCHHHHHHHHHHh
Confidence 345678999999999999999998765 334466643 2478999999999999999955
No 354
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.93 E-value=4.6e-05 Score=60.91 Aligned_cols=73 Identities=10% Similarity=0.018 Sum_probs=54.9
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcc-eEEEEeCCHHHHHHHHHHh-Cc--cc--eEEEE
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPF-AMMMQFPSFSAYDNAFRLI-GR--KG--RLYRL 132 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~-eAfV~F~S~~d~~~AL~~l-g~--~g--Ryv~i 132 (227)
.+....|++.||||+++++|+.+.|+.+. ....|++..+ . .+ .|||+|.+.+++++|++.| |. .| +-++|
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG-~V~~V~i~~~-~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFG-TVLKIITFTK-N--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSS-CEEEEEEEEE-T--TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcC-CEEEEEEEcC-C--CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 35667799999999999999999999987 3455655432 2 34 5999999999999999955 53 22 45566
Q ss_pred EEc
Q 027131 133 ERA 135 (227)
Q Consensus 133 ~~~ 135 (227)
+-.
T Consensus 101 ~~a 103 (130)
T 3zzy_A 101 DFS 103 (130)
T ss_dssp EEC
T ss_pred Eec
Confidence 544
No 355
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.88 E-value=3.5e-05 Score=64.02 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=53.0
Q ss_pred EEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-Cc----cceEEEEEEcc
Q 027131 63 FYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-GR----KGRLYRLERAE 136 (227)
Q Consensus 63 ~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g~----~gRyv~i~~~~ 136 (227)
.-++|.||||+++++||.+.|+.+. ....|++. ++. ..+-|||+|.+.+++.+|++.| |. .+|-++|+...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG-~V~~V~i~-~k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFG-TVLKIITF-TKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHS-CEEEEEEE-ESS-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcC-CEEEEEEE-eCC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 3389999999999999999999885 33556653 222 2357999999999999999954 53 22667776553
No 356
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=0.00019 Score=52.31 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=47.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~ 135 (227)
+++.|| +++++||.++|+.+. ....|++. ...+-|||+|.+.+++.+|+..+ | ..||-++|...
T Consensus 18 l~V~n~--~~t~~~l~~~F~~~G-~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 18 LYVYGE--DMTPTLLRGAFSPFG-NIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp EEEECS--SCCHHHHHHHHTTTS-CEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred EEEcCC--CCCHHHHHHHHhhCC-CEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 567784 999999999999986 23455552 22358999999999999999844 4 45666666544
No 357
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=5.7e-05 Score=57.99 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=47.0
Q ss_pred EEEEeCCCCCCCHHHHH----HhcCCCC--CCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEE
Q 027131 64 YGKLLGISRQTLKSDII----NLLEGCN--LTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLER 134 (227)
Q Consensus 64 yv~lrgLP~s~~K~DI~----~FF~g~~--I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~ 134 (227)
.++++||||++++++|. ++|+.|. |.+ | .| |-|||+|.+.+++.+|++.| | ..||-++|.-
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~--V------tg--G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS--I------TG--CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE--C------CT--TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE--E------ec--CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 47899999999988755 7999994 421 1 12 89999999999999999955 5 4567777643
No 358
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=4.3e-05 Score=59.75 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=44.3
Q ss_pred EEE--eCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-Cc
Q 027131 65 GKL--LGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-GR 125 (227)
Q Consensus 65 v~l--rgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g~ 125 (227)
+++ -||||+++++|+.++|+.+. ....|.+..+ .+-|||+|.+.+|+++|+..| |+
T Consensus 28 L~V~Ng~L~~~~te~~L~~~F~~fG-~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 28 LVVANGGLGNGVSRNQLLPVLEKCG-LVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp EEEETCTGGGTCCHHHHHHHHHHHS-CEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTC
T ss_pred EEEECCCCCCCCCHHHHHHHHHhcC-CeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCC
Confidence 456 55999999999999999988 3345665422 258999999999999999944 54
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.67 E-value=6e-05 Score=65.86 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=57.1
Q ss_pred CCcEEEEeccCCCC---------CHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCccc-
Q 027131 147 NGKTVLLQNVPRIA---------VAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFC- 216 (227)
Q Consensus 147 ~g~~V~LrgLPf~~---------tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~- 216 (227)
...+|++.|||+++ ++++|.+.|+.|.=+ .+|.++. ..|-|||.|.++++|.+|+...++..+
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I-~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDI-DRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCE-EEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCE-EEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 35689999999998 899999999999533 2455553 346799999999999999998888777
Q ss_pred -----------CCceeEEE
Q 027131 217 -----------LNNQVSVR 224 (227)
Q Consensus 217 -----------gn~~v~lr 224 (227)
....|.++
T Consensus 206 ~~~~~e~~~~~~gr~L~V~ 224 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVK 224 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEE
T ss_pred ccccccccccCCCCEEEEE
Confidence 55577765
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=0.0012 Score=49.66 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=50.9
Q ss_pred EEEEEeCCCCCCC-----------HHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccce
Q 027131 63 FYGKLLGISRQTL-----------KSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGR 128 (227)
Q Consensus 63 ~yv~lrgLP~s~~-----------K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gR 128 (227)
.++.|+||..... ++||..+|+.+. ....|.+ +++. ..|-|||+|.+.+++++|+..+ | ..||
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G-~v~~v~i-~~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG-QIRKLLL-FDRH-PDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS-CCSEEEE-ETTC-TTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC-CEeEEEE-ecCC-CCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4579999955443 689999999887 4455654 5543 3468999999999999999844 4 3566
Q ss_pred EEEEEEc
Q 027131 129 LYRLERA 135 (227)
Q Consensus 129 yv~i~~~ 135 (227)
-+.+.-.
T Consensus 93 ~l~v~~a 99 (112)
T 2dit_A 93 QITAQAW 99 (112)
T ss_dssp ECEEEEC
T ss_pred EEEEEEe
Confidence 6666544
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00021 Score=57.97 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=46.8
Q ss_pred EEEeCC----CCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCc-ceEEEEeCC----H-HH---HHHHHH
Q 027131 65 GKLLGI----SRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMP-FAMMMQFPS----F-SA---YDNAFR 121 (227)
Q Consensus 65 v~lrgL----P~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~-~eAfV~F~S----~-~d---~~~AL~ 121 (227)
+.+.|| ||+++..+|++||+.+. ....+.+.+|+ .|++ |-+||+|.+ + ++ +.+|+.
T Consensus 5 I~VgnL~~~~~~~tte~~Lk~~Fs~fG-eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 5 IVVYPAQDSTTTNIQDISIKNYFKKYG-EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp EEEEESSSSCCCCCCHHHHHHHHHTTS-CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhcC-CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 578999 99999999999999887 67999999999 8887 589999996 3 33 666666
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.00028 Score=53.39 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=45.4
Q ss_pred CCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 158 RIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 158 f~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
.+++++||.++|+.|.=+ ..|.+. +++.|-|+|.|.++++|.+|+... ..+.++ +|.+..
T Consensus 27 ~~~te~~L~~~F~~~G~V-~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~-~l~V~~ 86 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEV-LNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDN-PLKISW 86 (100)
T ss_dssp CSCCHHHHHHHHHTTSCE-EEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSS-BCEEEC
T ss_pred CCCCHHHHHHHHHhcCCE-EEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCC-eEEEEE
Confidence 568999999999999532 234444 367899999999999999999984 445554 666653
No 363
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.41 E-value=0.00066 Score=52.29 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=47.7
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH-hC--ccceEEEEEEc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL-IG--RKGRLYRLERA 135 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~-lg--~~gRyv~i~~~ 135 (227)
+++.| ++++++||..+|+.|. ....|.+. ...+-|||+|.+.+++++|+.. .| ..||-++|.-.
T Consensus 42 lfVgn--l~~te~~L~~~F~~~G-~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 42 LYVYG--EDMTPTLLRGAFSPFG-NIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp EEEEC--SSCCHHHHHHHHSTTC-CCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred EEEcC--CCCCHHHHHHHHHccC-CEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 56778 4799999999999986 33456663 2235899999999999999974 34 45666666544
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.38 E-value=3.4e-05 Score=58.33 Aligned_cols=65 Identities=9% Similarity=0.041 Sum_probs=48.5
Q ss_pred EeCCCCCCCHHHHHHhc------------CCCCCCCCCeEEEecCCCCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEE
Q 027131 67 LLGISRQTLKSDIINLL------------EGCNLTPDDLKVNYTRNYMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLY 130 (227)
Q Consensus 67 lrgLP~s~~K~DI~~FF------------~g~~I~~d~I~~~ydr~g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv 130 (227)
.-||||.++.+||++.| +.+. ....|++..++++++ |-|||+|.+.+++++|++.+ | ..||-+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G-~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG-EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC-ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 35799999998888777 7665 446688877776665 68999999999999999944 5 345544
Q ss_pred EE
Q 027131 131 RL 132 (227)
Q Consensus 131 ~i 132 (227)
.+
T Consensus 99 ~v 100 (104)
T 1jmt_A 99 HA 100 (104)
T ss_dssp CE
T ss_pred EE
Confidence 43
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.25 E-value=0.00075 Score=51.08 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=54.9
Q ss_pred EEEEeCCCC-----CCCHHHHHHhcCCCCCCCCCeEEEecCC--CCc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEE
Q 027131 64 YGKLLGISR-----QTLKSDIINLLEGCNLTPDDLKVNYTRN--YMP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRL 132 (227)
Q Consensus 64 yv~lrgLP~-----s~~K~DI~~FF~g~~I~~d~I~~~ydr~--g~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i 132 (227)
++.|+||.. .-+++||...|+.+. ....|++..+++ +++ |-|||+|.+.+++.+|+..| | ..||-+.+
T Consensus 10 ~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G-~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v 88 (105)
T 2pe8_A 10 VVLLRNMVGAGEVDEDLEVETKEECEKYG-KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 88 (105)
T ss_dssp EEEEESSSCSCCC---CHHHHHHHGGGGS-CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred EEEEEcCCChHHhhHHHHHHHHHHHHhcC-CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 578999862 347899999999876 456788888762 454 68999999999999999944 5 45776666
Q ss_pred EEccc
Q 027131 133 ERAEQ 137 (227)
Q Consensus 133 ~~~~~ 137 (227)
.-...
T Consensus 89 ~~a~~ 93 (105)
T 2pe8_A 89 CFYNL 93 (105)
T ss_dssp EECCH
T ss_pred EEcCH
Confidence 55543
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.16 E-value=0.00095 Score=51.59 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=55.4
Q ss_pred CcEEEEeccCC----------CCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccC
Q 027131 148 GKTVLLQNVPR----------IAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCL 217 (227)
Q Consensus 148 g~~V~LrgLPf----------~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~g 217 (227)
-+||.|+|+=- +-.++||...|+-|.-+. +|.+..+ .+.|-|+|.|.+.++|.+|+...|++..+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~-~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVI-HIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCS-EEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEE-EEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45899999832 223568899999987553 4555322 24688999999999999999999999888
Q ss_pred CceeEEEe
Q 027131 218 NNQVSVRV 225 (227)
Q Consensus 218 n~~v~lrv 225 (227)
.++|.+..
T Consensus 82 GR~i~v~~ 89 (114)
T 3s6e_A 82 GKMITAAY 89 (114)
T ss_dssp TEECEEEE
T ss_pred CEEEEEEE
Confidence 88887754
No 367
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.0023 Score=50.53 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=42.6
Q ss_pred EEEeCCCCC-CCHHHHHHhcCCCCCCCCCeEEE-ecCCCCcceEEEEeCC-HHHHHHHHHHh
Q 027131 65 GKLLGISRQ-TLKSDIINLLEGCNLTPDDLKVN-YTRNYMPFAMMMQFPS-FSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrgLP~s-~~K~DI~~FF~g~~I~~d~I~~~-ydr~g~~~eAfV~F~S-~~d~~~AL~~l 123 (227)
|++.||+++ ++++||+.+|+.+. .|... |.++.. +|||.|++ ++++..|++.+
T Consensus 21 l~v~~l~~~~~sredLke~F~~~G----~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 21 LKFSGDLDDQTCREDLHILFSNHG----EIKWIDFVRGAK--EGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp EEEEESCCSSCCHHHHHHHTCSSC----CEEEEECCTTCS--EEEEEESSCHHHHHHHHHHT
T ss_pred EEEecCCCCcCCHHHHHHHHHhcC----CEEEEEEecCCC--EEEEEECCChHHHHHHHHHh
Confidence 899999999 99999999999864 34433 433222 69999999 89999999965
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.0016 Score=49.12 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=43.3
Q ss_pred CCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-CccceEEEEEE
Q 027131 73 QTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-GRKGRLYRLER 134 (227)
Q Consensus 73 s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g~~gRyv~i~~ 134 (227)
.++++||..+|+.+. ....|++. +...|-|||+|.+.+++.+|++.+ +..+|-+.|.-
T Consensus 28 ~~te~~L~~~F~~~G-~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~ 86 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYG-EVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISW 86 (100)
T ss_dssp SCCHHHHHHHHHTTS-CEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEEC
T ss_pred CCCHHHHHHHHHhcC-CEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEE
Confidence 468999999999987 33456665 223468999999999999999953 55666666643
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.97 E-value=0.00044 Score=63.34 Aligned_cols=62 Identities=10% Similarity=0.211 Sum_probs=49.8
Q ss_pred CcEEEEec--cCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCccc
Q 027131 148 GKTVLLQN--VPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFC 216 (227)
Q Consensus 148 g~~V~Lrg--LPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~ 216 (227)
...+++-| |++++|++||.+.|+-|.=+ .+|.+ ..+ .|=|||+|.+.++|.+|+...|+.-+
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V-~~v~~--~~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLV-DALLM--PPN----KPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCE-EEEEC--CTT----CSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCe-EEEEE--eCC----CCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 45899988 78999999999999999533 23433 222 37899999999999999999888755
No 370
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.68 E-value=0.0073 Score=46.90 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=64.6
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHH--hCccceEEEEEEcc
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRL--IGRKGRLYRLERAE 136 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~--lg~~gRyv~i~~~~ 136 (227)
+....+|+++|||-.+..+-+.-||++-...-.|---.....+ ..|+|.|...+++++-|+. |-.++--+.|...
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~- 81 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLSLRPA- 81 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC-
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC-
Confidence 3567789999999999999999999997754444333332222 8899999999999999984 2222222222221
Q ss_pred ccccccccCCCCcEEEEeccCCCCC
Q 027131 137 QSEWDIVMPYNGKTVLLQNVPRIAV 161 (227)
Q Consensus 137 ~~~~~~~~~~~g~~V~LrgLPf~~t 161 (227)
..-+..+++|+|||-+.+
T Consensus 82 -------~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 82 -------PPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp -------CCCCCCCCCCCSCCCCCC
T ss_pred -------CCCCcceEeeecCCCCCC
Confidence 123445899999998865
No 371
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.59 E-value=0.0012 Score=49.88 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=52.5
Q ss_pred EEEEeCC--CCCC--------CHHHHHHhcCCCCCCCCCeEEEecCCC---C-cceEEEEeCCHHHHHHHHHHh-C--cc
Q 027131 64 YGKLLGI--SRQT--------LKSDIINLLEGCNLTPDDLKVNYTRNY---M-PFAMMMQFPSFSAYDNAFRLI-G--RK 126 (227)
Q Consensus 64 yv~lrgL--P~s~--------~K~DI~~FF~g~~I~~d~I~~~ydr~g---~-~~eAfV~F~S~~d~~~AL~~l-g--~~ 126 (227)
+|.|+|+ |... +++||+..|+.+. ....|++..++++ + .|-|||+|.+.+++.+|++.| | ..
T Consensus 7 vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G-~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~ 85 (105)
T 3v4m_A 7 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG-LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA 85 (105)
T ss_dssp EEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS-CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEECCCCHHHccChHHHHHHHHHHHHHHHccC-CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 5788886 4333 4679999999876 4567777776643 3 368999999999999999954 5 44
Q ss_pred ceEEEEEEcc
Q 027131 127 GRLYRLERAE 136 (227)
Q Consensus 127 gRyv~i~~~~ 136 (227)
||.+.+.-++
T Consensus 86 GR~i~v~~~~ 95 (105)
T 3v4m_A 86 NRVVVTKYCD 95 (105)
T ss_dssp TEECEEEEEC
T ss_pred CCEEEEEEeC
Confidence 6766665443
No 372
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=96.55 E-value=0.0057 Score=50.67 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=51.9
Q ss_pred CCHHHHHHccCCCcccCCceEEEeecCC----CCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEEEe
Q 027131 160 AVAEDVERFLSGCEYEASSISFMLRQSL----PDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRV 225 (227)
Q Consensus 160 ~tkeEI~~FFsG~~i~p~~I~l~~d~~~----g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~lrv 225 (227)
-..+|+...|+-|.=+ .+|.+..+... |++.|-++|+|.+.++|.+|+...|+|+.+.++|.+..
T Consensus 141 e~~~dl~~e~~~~G~v-~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAV-NRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp THHHHHHHHHTTTSCE-EEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred HHHHHHHHHHHccCCe-EEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 3568899999988633 35666654332 36789999999999999999999999999998988754
No 373
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.41 E-value=0.0026 Score=55.42 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=45.4
Q ss_pred EEEeCCCCCC---------CHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 65 GKLLGISRQT---------LKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrgLP~s~---------~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
++|.|||+++ +++||..+|+.+. ....|++..+ -+-|||+|.++++++.|+..|
T Consensus 137 LfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG-~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 137 LYVGGIDGALNSKHLKPAQIESRIRFVFSRLG-DIDRIRYVES----KNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp EEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS-CEEEEEEEGG----GTEEEEEESSHHHHHHHHHHH
T ss_pred eecCCCChhhhcccccccCcHHHHHHHHHccC-CEEEEEEECC----CCEEEEEeCCHHHHHHHHHHh
Confidence 5778999999 7999999999986 4466777754 357999999999999999854
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.29 E-value=0.0026 Score=58.15 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=42.1
Q ss_pred EEEeC--CCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh
Q 027131 65 GKLLG--ISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrg--LP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l 123 (227)
++|-| |+|+++++||.+.|+.+.- ...|.+. + + .+-|||+|.|.+|+++|++.|
T Consensus 21 l~VgN~gl~~~~te~~L~~~F~~~G~-V~~v~~~--~-~-kgfaFV~f~~~~~A~~Ai~~l 76 (345)
T 3tht_A 21 LVVANGGLGNGVSRNQLLPVLEKCGL-VDALLMP--P-N-KPYSFARYRTTEESKRAYVTL 76 (345)
T ss_dssp EEEETCSGGGTCCHHHHHHHHHTTSC-EEEEECC--T-T-CSEEEEEESSHHHHHHHHHHT
T ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCC-eEEEEEe--C-C-CCEEEEEECCHHHHHHHHHHh
Confidence 45665 7999999999999999862 2345542 2 2 268999999999999999944
No 375
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=95.94 E-value=0.013 Score=45.39 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=52.7
Q ss_pred EEEEeCCC-----CCCCHHHHHHhcCCCCCCCCCeEEEecCCC-----Cc-ceEEEEeCCHHHHHHHHHHh-C--ccceE
Q 027131 64 YGKLLGIS-----RQTLKSDIINLLEGCNLTPDDLKVNYTRNY-----MP-FAMMMQFPSFSAYDNAFRLI-G--RKGRL 129 (227)
Q Consensus 64 yv~lrgLP-----~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g-----~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRy 129 (227)
+|.|+|+- ..-.++||...|+.+. ....|++..++.+ +. |-+||+|.+.+++.+|++.| | ..||.
T Consensus 22 vl~L~Nm~~~~el~ddleedl~eef~k~G-~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 22 VMVLRNMVDPKDIDDDLEGEVTEECGKFG-AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp EEEEESCSCGGGCCTTHHHHHHHHHTTTS-CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccC-CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 57899973 2235799999999776 4567888877632 22 67999999999999999955 5 45676
Q ss_pred EEEEEcc
Q 027131 130 YRLERAE 136 (227)
Q Consensus 130 v~i~~~~ 136 (227)
+.+.-+.
T Consensus 101 i~v~~~~ 107 (118)
T 3ue2_A 101 VVAEVYD 107 (118)
T ss_dssp CEEEEEC
T ss_pred EEEEEcC
Confidence 6665443
No 376
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.32 E-value=0.035 Score=42.64 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=50.4
Q ss_pred EEEEeCCC----------CCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHh-C--ccceEE
Q 027131 64 YGKLLGIS----------RQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLI-G--RKGRLY 130 (227)
Q Consensus 64 yv~lrgLP----------~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~l-g--~~gRyv 130 (227)
||.|+|+= +.-.++||...|+.+.- ..+|++ +++...|-|||+|.+.+++++|++.| | ..||-+
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~-V~~v~i--~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGG-VIHIYV--DKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTC-CSEEEE--CTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhccCC-EEEEEE--ecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 67888852 23346789999998763 345666 33333578999999999999999954 5 457777
Q ss_pred EEEEcccc
Q 027131 131 RLERAEQS 138 (227)
Q Consensus 131 ~i~~~~~~ 138 (227)
.+.-+...
T Consensus 86 ~v~~~~~~ 93 (114)
T 3s6e_A 86 TAAYVPLP 93 (114)
T ss_dssp EEEEECHH
T ss_pred EEEEEcHH
Confidence 66555433
No 377
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.18 E-value=0.071 Score=41.30 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=52.6
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCc-eE-EEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCceeEE
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASS-IS-FMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSV 223 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~-I~-l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v~l 223 (227)
..+++|+++|||-++..+-+.-||.==...=.+ |. +.+.. +.|+|.|...+.|.+-|..+.-.+-+. +++|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~-~LsV 78 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGA-QLSL 78 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSS-BCEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCe-EEEE
Confidence 346799999999999999999999753212122 22 22232 459999999999999988867776665 7776
Q ss_pred E
Q 027131 224 R 224 (227)
Q Consensus 224 r 224 (227)
+
T Consensus 79 ~ 79 (104)
T 2dhx_A 79 R 79 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 378
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.78 E-value=0.16 Score=39.15 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=47.2
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHH--hcCccc
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIR--KNRGFC 216 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~--~n~rf~ 216 (227)
.|+.+| ++|-.-...||++-|+.|. +|.|-.-.+. .|+|.|.+++.|..|+.. ++-.|.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg----gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~k~~~y~ 76 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG----NIQISWIDDT-----SAFVSLSQPEQVQIAVNTSKYAESYR 76 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC----SCCCEEEETT-----EEEEECSCHHHHHHHHHHHHHCCSSE
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC----CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcccCCceE
Confidence 578888 9999999999999999994 6666553332 399999999999999984 355554
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.53 E-value=0.078 Score=40.03 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=45.7
Q ss_pred CcEEEEeccC----CCCCH----HHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCc
Q 027131 148 GKTVLLQNVP----RIAVA----EDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNN 219 (227)
Q Consensus 148 g~~V~LrgLP----f~~tk----eEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~ 219 (227)
+++|.+.-.| .+.-. .|+.+-|+.|. .|.+..=.. ++ ++|.|.+.+.|.+|+..++...+|.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G----~Vi~vr~~~-d~----~fVtF~d~~sAlaAi~mnG~~v~Gr- 76 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG----EVILIRFVE-DK----MWVTFLEGSSALNVLSLNGKELLNR- 76 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC----CEEEEEECS-SS----EEEEESSHHHHHHGGGGTTCEETTE-
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC----CeEEEEEec-CC----EEEEECChHHHHHHHhcCCeEeCCe-
Confidence 3477777776 22223 67899999995 233332222 23 8999999999999999666655554
Q ss_pred eeEEEe
Q 027131 220 QVSVRV 225 (227)
Q Consensus 220 ~v~lrv 225 (227)
.|.+++
T Consensus 77 ~LkV~l 82 (91)
T 2dnr_A 77 TITIAL 82 (91)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777765
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.48 E-value=0.11 Score=40.95 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=50.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHccCCCcccCCc----eEEEeecCCCCcceeEEEEcCCHHHHHHHH-HHhcCccc
Q 027131 147 NGKTVLLQNVPRIAVAEDVERFLSGCEYEASS----ISFMLRQSLPDSIKWATVRFPSQTQAMDAF-IRKNRGFC 216 (227)
Q Consensus 147 ~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~----I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al-~~~n~rf~ 216 (227)
+.++|-|=|||=.+++.-|..|...+.-++.+ |.|.-|.+ | |+|.|.+...|-+|. .+++.-|-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-G-----Aivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-G-----AIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-E-----EEEECSCHHHHHHHHHHHSSEEET
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-c-----eEEEEccchhhHHHHhhcCCeeec
Confidence 46799999999999999999999988333333 55555776 3 999999999999998 55555554
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.66 E-value=0.085 Score=40.20 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=46.9
Q ss_pred CcEEEEeccCCC-----CC----HHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 148 GKTVLLQNVPRI-----AV----AEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 148 g~~V~LrgLPf~-----~t----keEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
+.+|.+.-+|-+ .- -.|+.+-|+.|. ..-.|.+..| + ++|.|.+.+.|.+|+..++..++|.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vilvr~v~d----~----~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TIVLVRINQG----Q----MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CCSEEEEETT----E----EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC-CEEEEEEecC----c----EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 348888877622 11 256888888776 2234555544 2 9999999999999999555555555
Q ss_pred ceeEEEe
Q 027131 219 NQVSVRV 225 (227)
Q Consensus 219 ~~v~lrv 225 (227)
.+.+++
T Consensus 86 -~L~V~~ 91 (95)
T 1ufw_A 86 -AVKISG 91 (95)
T ss_dssp -EEEEEC
T ss_pred -EEEEec
Confidence 888775
No 382
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.84 E-value=0.25 Score=38.03 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=47.8
Q ss_pred CcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHh--cCccc
Q 027131 148 GKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK--NRGFC 216 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~--n~rf~ 216 (227)
.|+.+| ++|-.-...||++-|+.|. +|.|-.-.+. .|+|.|.+++.|..|+..- +-.|.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg----gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~~~~~y~ 66 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG----NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSKYAESYR 66 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE----EEEEEEEETT-----EEEEEEEEECHHHHHHHHHTTCSSCC
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC----CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcccCCceE
Confidence 367788 9999999999999999994 7777763332 3999999999999999854 44444
No 383
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=91.41 E-value=0.93 Score=34.80 Aligned_cols=56 Identities=9% Similarity=0.186 Sum_probs=44.3
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg 124 (227)
.+..+ +| ++|..-...||.+.|+.|. ||.|-.-. -..|||.|.+++.+..||..+.
T Consensus 15 r~HVf--~l-~FP~ewKt~DI~~lFs~fg----gv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVL--HV-TFPKEWKTSDLYQLFSAFG----NIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEE--EE-ECCTTCCHHHHHHHHTTTC----SCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEE--EE-eCChhhhhHHHHHHhhccC----CEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45555 55 9999999999999999995 55553211 3489999999999999999763
No 384
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.04 E-value=0.7 Score=34.76 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=51.2
Q ss_pred CCCeEEEEEeC----CCCC--CCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC--ccceEE
Q 027131 59 TKGVFYGKLLG----ISRQ--TLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG--RKGRLY 130 (227)
Q Consensus 59 ~~~~~yv~lrg----LP~s--~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRyv 130 (227)
-++-+.|.+.+ -.|- ..-.|+++-|+.|. ..-.|+|..|+ +||+|.+.+++.+|++..| ..||.+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 35667777754 1121 13478999999988 44556665554 8999999999999999556 456777
Q ss_pred EEEEcccccc
Q 027131 131 RLERAEQSEW 140 (227)
Q Consensus 131 ~i~~~~~~~~ 140 (227)
+|..- ...|
T Consensus 79 kV~lk-t~dW 87 (91)
T 2dnr_A 79 TIALK-SPSG 87 (91)
T ss_dssp EEEEC-CCSS
T ss_pred EEEeC-CCCc
Confidence 77655 3344
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=90.71 E-value=0.26 Score=38.86 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=46.3
Q ss_pred CCCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhCc
Q 027131 59 TKGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIGR 125 (227)
Q Consensus 59 ~~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg~ 125 (227)
.....||-+.|.|-+. ...|+++|+.|.-..+.. + .....=..|.|.|+.++++||...|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~---~--~~~~NWihI~Y~s~~~A~rAL~kNG~ 81 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHV---M--SNTGNWMHIRYQSKLQARKALSKDGR 81 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEE---E--CSSSSEEEEEESSHHHHHHHHTTTTC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEec---c--CCCCCeEEEEeCCHHHHHHHHHhCCe
Confidence 4567899999999996 779999999887432222 2 11234689999999999999997764
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=90.63 E-value=0.48 Score=37.35 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=50.1
Q ss_pred CCCcEEEEeccCCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 146 YNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 146 ~~g~~V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
.+...|.+=|+|... ...|.+.|+-|--+ +...+ +.++ -...|+|.|+.+|++||.+|+.-+.++--|
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~I---v~~~~-~~~~---NWihI~Y~s~~~A~rAL~kNG~ii~g~~mI 89 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNI---LKHVM-SNTG---NWMHIRYQSKLQARKALSKDGRIFGESIMI 89 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCE---EEEEE-CSSS---SEEEEEESSHHHHHHHHTTTTCEETTTEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcE---EEecc-CCCC---CeEEEEeCCHHHHHHHHHhCCeEecCCEEE
Confidence 345679999999996 78899999888322 12222 2222 489999999999999999988877666333
No 387
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.39 E-value=0.2 Score=38.14 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=47.9
Q ss_pred CCCeEEEEEeCC-----CC-C-CCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC--ccceE
Q 027131 59 TKGVFYGKLLGI-----SR-Q-TLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG--RKGRL 129 (227)
Q Consensus 59 ~~~~~yv~lrgL-----P~-s-~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg--~~gRy 129 (227)
-++-+.|.+.+= .| . ..-.|+++-|+.+. ..-.|+|..|+ +||+|.+.+++.+|++..| ..||.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC-CEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 356666676530 11 0 12367999999888 55678887776 9999999999999999556 44677
Q ss_pred EEEE
Q 027131 130 YRLE 133 (227)
Q Consensus 130 v~i~ 133 (227)
++|.
T Consensus 87 L~V~ 90 (95)
T 1ufw_A 87 VKIS 90 (95)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
No 388
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=86.38 E-value=1.1 Score=36.75 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=43.7
Q ss_pred CCHHHHHHhcCCCCCCCCCeEEEecC-CC----Cc-ceEEEEeCCHHHHHHHHHHh-C--ccceEEEEEEcc
Q 027131 74 TLKSDIINLLEGCNLTPDDLKVNYTR-NY----MP-FAMMMQFPSFSAYDNAFRLI-G--RKGRLYRLERAE 136 (227)
Q Consensus 74 ~~K~DI~~FF~g~~I~~d~I~~~ydr-~g----~~-~eAfV~F~S~~d~~~AL~~l-g--~~gRyv~i~~~~ 136 (227)
-.++|+...|+.+. ....|++.-+. ++ +. |-+||+|.+.+++.+|+..| | ..||-+.+.-++
T Consensus 141 e~~~dl~~e~~~~G-~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFG-AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTS-CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccC-CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 35678888888766 44667776554 22 43 57999999999999999955 5 457766654443
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=82.13 E-value=1.4 Score=33.87 Aligned_cols=52 Identities=8% Similarity=0.142 Sum_probs=43.5
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg 124 (227)
.+| ++|.+-...||.+.|+.|. ||.|-.-. -..|||.|.+++.+..||..+.
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fg----gv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFG----NIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSE----EEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEE-eCChhhhhHHHHHHHhccC----CEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 355 9999999999999999995 77775321 3489999999999999999764
No 390
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=81.33 E-value=3.4 Score=32.47 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=51.2
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCC-CCCCCC-eEEEecCCCCcceEEEEeCCHHHHHHHHH-HhC--ccceEEEEE
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGC-NLTPDD-LKVNYTRNYMPFAMMMQFPSFSAYDNAFR-LIG--RKGRLYRLE 133 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~-~I~~d~-I~~~ydr~g~~~eAfV~F~S~~d~~~AL~-~lg--~~gRyv~i~ 133 (227)
+....+=|.|||=.+++.-|+.|.+.. .|.+.+ +++.+-.+ -+.|+|+|.+..++-+|.- ..| ..||-+++-
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD--H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD--FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT--TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC--CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 334557899999999999999999776 554443 34444221 2579999999999999885 445 446766553
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=78.27 E-value=8.5 Score=28.51 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=37.6
Q ss_pred EEEeccCCCCCHHHHHHccCCCcccCCceEEEe-ecC---C-CCcceeEEEEcCCHHHHHHHHH
Q 027131 151 VLLQNVPRIAVAEDVERFLSGCEYEASSISFML-RQS---L-PDSIKWATVRFPSQTQAMDAFI 209 (227)
Q Consensus 151 V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~-d~~---~-g~ptGeA~V~F~S~e~A~~Al~ 209 (227)
|-||+||.+.|+||...=+..+. .+...+ -+| . ...-..|+|.|.+.+++..=..
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~----~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMP----EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCC----CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHhcCcc----cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 77999999999999999988873 232222 111 1 1223679999999876655443
No 392
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=76.63 E-value=4.1 Score=33.92 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=39.0
Q ss_pred EEEEeccCC---------CCCHHHHHHcc--CCCcccCCceEEEeecCCCCcceeEEEEcCCHH
Q 027131 150 TVLLQNVPR---------IAVAEDVERFL--SGCEYEASSISFMLRQSLPDSIKWATVRFPSQT 202 (227)
Q Consensus 150 ~V~LrgLPf---------~~tkeEI~~FF--sG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e 202 (227)
++-|.|+|- +-+..++.+-| +|| .|..|.-+++.+| -+|.|+|.|.+--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F--~p~kv~~l~~~~G--h~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGF--NPTRVRPLWNYLG--HSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTC--CCSEEEEEECSSB--EEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCC--CCceeEecccCCC--CceeEEEEecCCh
Confidence 466788886 23457888877 888 8889999999984 7899999999753
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=75.84 E-value=4.6 Score=30.03 Aligned_cols=60 Identities=10% Similarity=-0.036 Sum_probs=41.7
Q ss_pred EEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEecC--CCC--cceEEEEeCCHHHHHHHHH-HhCc
Q 027131 65 GKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTR--NYM--PFAMMMQFPSFSAYDNAFR-LIGR 125 (227)
Q Consensus 65 v~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr--~g~--~~eAfV~F~S~~d~~~AL~-~lg~ 125 (227)
|-+|.||-+.++++...-++... ..+...+.-.+ .+. ++.|+|.|++.+|+..-.+ +.|+
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~-~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMP-EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCC-CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCHHHHHHHhcCcc-cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 46899999999999999998764 33333333322 122 4689999999888766655 3343
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=70.12 E-value=6.5 Score=29.73 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=35.6
Q ss_pred EEEeccCCCCCHHHHHHccCCCcccCCceEEEe-ecC---C-CCcceeEEEEcCCHHHHHHHHH
Q 027131 151 VLLQNVPRIAVAEDVERFLSGCEYEASSISFML-RQS---L-PDSIKWATVRFPSQTQAMDAFI 209 (227)
Q Consensus 151 V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~-d~~---~-g~ptGeA~V~F~S~e~A~~Al~ 209 (227)
|-||.||.+-|+|+...=+..+ .+ +.-.+ -+| . ...-..|+|.|.+.++...-..
T Consensus 12 vVIRrLPP~Ltee~F~~~l~~~--~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~ 71 (97)
T 2l08_A 12 VVIRRLPPGLTKEQLEEQLRPL--PA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRD 71 (97)
T ss_dssp EEEECCCSCSCHHHHTTTTSCC--SS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHhCCc--Cc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 7899999999999987777764 22 22222 111 1 1112469999999977665444
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=64.53 E-value=2.9 Score=33.48 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=24.8
Q ss_pred eeEEEEcCCHHHHHHHHHHhcCcccCC
Q 027131 192 KWATVRFPSQTQAMDAFIRKNRGFCLN 218 (227)
Q Consensus 192 GeA~V~F~S~e~A~~Al~~~n~rf~gn 218 (227)
...-|+|.|+.+|.+||.+|+.-|.|+
T Consensus 63 NWikItYds~~~A~rAL~~NG~ii~G~ 89 (132)
T 3p3d_A 63 SWTKITYDNPASAVDALLENGAVFNGV 89 (132)
T ss_dssp TEEEEEBSSHHHHHHHHTTTTCEETTE
T ss_pred cEEEEEcCCHHHHHHHHHhCCeEeCcE
Confidence 578999999999999999999998775
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=51.97 E-value=14 Score=27.95 Aligned_cols=52 Identities=6% Similarity=-0.116 Sum_probs=36.1
Q ss_pred EEeCCCCCCCHHHHHHhcCCCCCCCCCe-EEEecCCC----C--cceEEEEeCCHHHHHHHHH
Q 027131 66 KLLGISRQTLKSDIINLLEGCNLTPDDL-KVNYTRNY----M--PFAMMMQFPSFSAYDNAFR 121 (227)
Q Consensus 66 ~lrgLP~s~~K~DI~~FF~g~~I~~d~I-~~~ydr~g----~--~~eAfV~F~S~~d~~~AL~ 121 (227)
-||.||-+.|+++...-++.+ .+ + -+-|-.+. . ++.|+|.|++.+|+..-.+
T Consensus 13 VIRrLPP~Ltee~F~~~l~~~--~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~ 71 (97)
T 2l08_A 13 VIRRLPPGLTKEQLEEQLRPL--PA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRD 71 (97)
T ss_dssp EEECCCSCSCHHHHTTTTSCC--SS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHhCCc--Cc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 799999999999988877763 22 2 12221111 1 3579999999999776666
No 397
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=50.88 E-value=8.1 Score=34.06 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.1
Q ss_pred ccCCCC-CHHHHHHccCCCcccCCceEEEe
Q 027131 155 NVPRIA-VAEDVERFLSGCEYEASSISFML 183 (227)
Q Consensus 155 gLPf~~-tkeEI~~FFsG~~i~p~~I~l~~ 183 (227)
|+|+.. |.+||.+||.||++++.++....
T Consensus 221 g~p~~~rs~~ei~~~f~GlelvePG~v~~~ 250 (277)
T 3giw_A 221 NMPMRLRTHAEAEEFFEGLELVEPGIVQVH 250 (277)
T ss_dssp TCCCCCCCHHHHHHTTTTSEECTTCSEEGG
T ss_pred CCCCccCCHHHHHHHhCCCcccCCcEeecc
Confidence 456644 78999999999999999988765
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=48.49 E-value=11 Score=29.98 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=42.3
Q ss_pred CCeEEEEEeCCCCCCCHHHHHHhcCCCCCCCCCeEEEe--------cC--CCCc---c--eEEEEeCCHHHHHHHHHHhC
Q 027131 60 KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNY--------TR--NYMP---F--AMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 60 ~~~~yv~lrgLP~s~~K~DI~~FF~g~~I~~d~I~~~y--------dr--~g~~---~--eAfV~F~S~~d~~~AL~~lg 124 (227)
.++.+|-|.|.|-+.+. -|++.|+.|.-..+++..+- ++ ...| + =.-|.|.|..++.+||..-|
T Consensus 5 ~~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG 83 (132)
T 3p3d_A 5 NGELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENG 83 (132)
T ss_dssp ---CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTT
T ss_pred cCceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCC
Confidence 56778999999988876 78888888854333322110 01 1113 2 25899999999999999776
Q ss_pred c
Q 027131 125 R 125 (227)
Q Consensus 125 ~ 125 (227)
.
T Consensus 84 ~ 84 (132)
T 3p3d_A 84 A 84 (132)
T ss_dssp C
T ss_pred e
Confidence 4
No 399
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.88 E-value=6.5 Score=28.34 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=20.5
Q ss_pred cCCCCCHHHHHHccCCCcccCCceE
Q 027131 156 VPRIAVAEDVERFLSGCEYEASSIS 180 (227)
Q Consensus 156 LPf~~tkeEI~~FFsG~~i~p~~I~ 180 (227)
=|=+.|+|||.+| .-++|+|+.|+
T Consensus 46 dP~~LT~eEi~~F-aRLdIDP~TIT 69 (71)
T 2eo2_A 46 DPSTLTEEEVRKF-ARLNIDPATIT 69 (71)
T ss_dssp STTTCCHHHHHHH-HHTCCCSTTCC
T ss_pred CcccCCHHHHhhc-eecccCcccee
Confidence 3778999999985 78999999986
No 400
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=43.76 E-value=8.3 Score=30.39 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=34.9
Q ss_pred HHhcCCCCCC-CCCeEEEecCCCCcceEEEEeCCHHHHHHH
Q 027131 80 INLLEGCNLT-PDDLKVNYTRNYMPFAMMMQFPSFSAYDNA 119 (227)
Q Consensus 80 ~~FF~g~~I~-~d~I~~~ydr~g~~~eAfV~F~S~~d~~~A 119 (227)
++||.|.+=. .-+|+++-+++|.+|-|...|+....++..
T Consensus 4 IQF~~Gi~E~~vpdVrLtRsrdg~~g~A~f~F~~p~al~~~ 44 (120)
T 2kvo_A 4 IQFSKGVAETVVPEVRLSKSKNGQSGMAKFYFLEPTILAKE 44 (120)
T ss_dssp EESSSSCCCCCCCEEEEEECTTSCSEEEEEEEESCGGGTSS
T ss_pred EEEecCCCCCcCCceEEEEcccCCccEEEEEECCchhcccc
Confidence 5799998865 689999999999999999999999876554
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=37.22 E-value=50 Score=31.14 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=41.6
Q ss_pred EEEeccCCCCCHHHHHHccCCCcccCCceEEEe-ecCCCCcceeEEEEcCCHHHHHHHHHHhcCc
Q 027131 151 VLLQNVPRIAVAEDVERFLSGCEYEASSISFML-RQSLPDSIKWATVRFPSQTQAMDAFIRKNRG 214 (227)
Q Consensus 151 V~LrgLPf~~tkeEI~~FFsG~~i~p~~I~l~~-d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~r 214 (227)
|++-++|-..+..||.+-|+.|. +|.+-. |.. .|+|.|.+.+.|..|+..-+..
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg----~v~V~widdt------~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFG----NIQISWIDDT------SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGC----CCEEEECSSS------EEEEECSCHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCHHHHHHHHHhcC----CEEEEEEcCC------eEEEEECCHHHHHHHHHHHHhC
Confidence 44456999999999999999984 344433 322 3999999999999999887643
No 402
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=32.86 E-value=1.6e+02 Score=22.14 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 157 PRIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 157 Pf~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
.|.--.+-|++.|.++. +..+.|.|...-| =+|.|.|.+|-..|+..-+
T Consensus 43 s~~~L~~~V~~lFp~l~--~~~f~l~Y~DedG-----DlItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 43 PCERLLSRVAVLFPALR--PGGFQAHYRAERG-----DLVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp HHHHHHHHHHHHCTTSC--SSCEEEEEECTTC-----CEEEECSHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHccccC--CCcEEEEEECCCC-----CEEEecCHHHHHHHHHhcC
Confidence 34555788999999884 6679999943335 4899999999999999865
No 403
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.05 E-value=74 Score=24.18 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=45.1
Q ss_pred EEEEeccCCCC-----CHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhcCc-ccCC
Q 027131 150 TVLLQNVPRIA-----VAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRG-FCLN 218 (227)
Q Consensus 150 ~V~LrgLPf~~-----tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n~r-f~gn 218 (227)
++.+-|||-.+ .|++|+.-|.-++ +.+++.+=...+ ...|.|.+.++|.+|=++..+. |+|.
T Consensus 7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~~---~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 7 GLIACVANDDVFSESETRAKFESLFRTYD---KDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp EEEEECCCGGGGSTTTHHHHHHHHHHTTC---SSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred eEEEecCCHHHcCCHHHHHHHHHHHHhhC---cCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCc
Confidence 46677777654 2577788887773 346666654444 4999999999999999988877 6665
No 404
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=28.30 E-value=1.2e+02 Score=22.77 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHhcCCCCCCCCCeEEEecC-CCCcceEEEEeCCHHHHHHHHHHhC
Q 027131 70 ISRQTLKSDIINLLEGCNLTPDDLKVNYTR-NYMPFAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 70 LP~s~~K~DI~~FF~g~~I~~d~I~~~ydr-~g~~~eAfV~F~S~~d~~~AL~~lg 124 (227)
.+|.-.+.-|++.|.++. ...+.+.|.+ +|- +|.|.|.+++..|+...+
T Consensus 42 ~s~~~L~~~V~~lFp~l~--~~~f~l~Y~DedGD----lItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALR--PGGFQAHYRAERGD----LVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp CHHHHHHHHHHHHCTTSC--SSCEEEEEECTTCC----EEEECSHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHccccC--CCcEEEEEECCCCC----EEEecCHHHHHHHHHhcC
Confidence 346667888999998655 6679999876 554 799999999999999875
No 405
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=27.42 E-value=1.1e+02 Score=28.85 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHhcCCCCCCCCCeEEEecCCCCcceEEEEeCCHHHHHHHHHHhC
Q 027131 69 GISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNAFRLIG 124 (227)
Q Consensus 69 gLP~s~~K~DI~~FF~g~~I~~d~I~~~ydr~g~~~eAfV~F~S~~d~~~AL~~lg 124 (227)
++|......||.+.|+.|. +|.+- +- ....|||.|.+.+++..||+.+.
T Consensus 446 ~f~~~~~~~~i~~~fs~fg----~v~V~--wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 446 TFPKEWKTSDLYQLFSAFG----NIQIS--WI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp ECCTTCCHHHHHHHGGGGC----CCEEE--EC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHhcC----CEEEE--EE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 4888888999999999985 34331 10 12469999999999999999764
No 406
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=23.93 E-value=52 Score=26.89 Aligned_cols=89 Identities=10% Similarity=0.059 Sum_probs=53.4
Q ss_pred EEEeCCHHHHHHHHHHhC--ccceEEEEEEccc--cccccccCCCCcEEEEeccCCCCCHHHHHHccCCCc-ccCCceEE
Q 027131 107 MMQFPSFSAYDNAFRLIG--RKGRLYRLERAEQ--SEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCE-YEASSISF 181 (227)
Q Consensus 107 fV~F~S~~d~~~AL~~lg--~~gRyv~i~~~~~--~~~~~~~~~~g~~V~LrgLPf~~tkeEI~~FFsG~~-i~p~~I~l 181 (227)
-+.|.|..+.-..+.... ...+-+.|..... ..|+.. .+.+ |.-..-..
T Consensus 46 ~~~F~s~~cm~~~~~~~e~~~~i~aiyV~D~~t~~~~w~~p--------------------------~~~~wIdA~~A~Y 99 (175)
T 2hpu_A 46 PLFFSQVRDAIAYARGPEQIAPILVIYVNDMGAAGATWDQP--------------------------GDGNWIAADKAFY 99 (175)
T ss_dssp EEEESCHHHHHHHHTTGGGGSCEEEEEEEESCTTSSCTTCS--------------------------CCCEEECGGGSEE
T ss_pred EEEECCHHHHHHHHhcccccCceeEEEEEcCcccccccccC--------------------------CCCceEECCeeEE
Confidence 568999988766665432 2223445555543 345310 1111 12334455
Q ss_pred EeecCCCCcce-eEEEEcCCHHHHHHHHHHhcCcccCCcee
Q 027131 182 MLRQSLPDSIK-WATVRFPSQTQAMDAFIRKNRGFCLNNQV 221 (227)
Q Consensus 182 ~~d~~~g~ptG-eA~V~F~S~e~A~~Al~~~n~rf~gn~~v 221 (227)
+++.+..-|.| ..++-|.++++|.+-..+++++.+.=.+|
T Consensus 100 VvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~GG~Vl~f~ei 140 (175)
T 2hpu_A 100 VVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGGQVLALADI 140 (175)
T ss_dssp EEESSSSCSSSCCCEEEESCHHHHHHHHHHTEEEEEEGGGC
T ss_pred EeCCCCCCCCCCCcccCcCCHHHHHHHHHHcCCEEEEHHHc
Confidence 66655434777 78999999999999988887765543333
No 407
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.92 E-value=1.7e+02 Score=22.02 Aligned_cols=38 Identities=5% Similarity=0.057 Sum_probs=21.2
Q ss_pred CeEEEEEeCC--------CCCCCHHHHHHhc-CCCCCCCCCeEEEec
Q 027131 61 GVFYGKLLGI--------SRQTLKSDIINLL-EGCNLTPDDLKVNYT 98 (227)
Q Consensus 61 ~~~yv~lrgL--------P~s~~K~DI~~FF-~g~~I~~d~I~~~yd 98 (227)
..+.|.++.+ +-+.|-.|++.-. ...+|..+.+++.|.
T Consensus 31 ~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 31 KIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp CCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 3444555543 3455666666544 234566677777764
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=23.04 E-value=2.2e+02 Score=21.62 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=38.8
Q ss_pred CcEEEEeccCCCCCHHHHHHcc--CCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHh
Q 027131 148 GKTVLLQNVPRIAVAEDVERFL--SGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRK 211 (227)
Q Consensus 148 g~~V~LrgLPf~~tkeEI~~FF--sG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~ 211 (227)
.+.|.+-|+|-+..|.|++-=- -||++ ..|+-.| .|.++|.+.++-.-|..+.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyef-------ycdyidg----qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEF-------YCDYIDG----QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCE-------EEEECSS----CEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeE-------eeeeecC----eeEEEecCChHHHHHHHHH
Confidence 3458999999999999987432 24443 3454333 5999999999988888763
No 409
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=21.29 E-value=2.8e+02 Score=21.29 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=37.8
Q ss_pred CCCCHHHHHHccCCCcccCCceEEEeecCCCCcceeEEEEcCCHHHHHHHHHHhc
Q 027131 158 RIAVAEDVERFLSGCEYEASSISFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKN 212 (227)
Q Consensus 158 f~~tkeEI~~FFsG~~i~p~~I~l~~d~~~g~ptGeA~V~F~S~e~A~~Al~~~n 212 (227)
|.--.+-|.+.|.++ .+..+.|.|...-| =+|.|.|.+|-..|+...+
T Consensus 59 ~~~L~~kV~~lFp~L--~~~~f~l~YkDEdG-----DlItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 59 SERLLSRVAVLFPAL--RPGGFQAHYRAERG-----DLVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp HHHHHHHHHHHCTTS--CSSCEEEEEECTTC-----CEEEECSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcccc--CCCcEEEEEECCCC-----CEEEecCHHHHHHHHHhcC
Confidence 333578899999988 46679999943335 4899999999999999865
No 410
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.72 E-value=53 Score=27.16 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=43.4
Q ss_pred EEEeCCCCC---------CCHHHHHHhc--CCCCCCCCCeEEEecCCCCcceEEEEeCC-HHHHHHHHHHh
Q 027131 65 GKLLGISRQ---------TLKSDIINLL--EGCNLTPDDLKVNYTRNYMPFAMMMQFPS-FSAYDNAFRLI 123 (227)
Q Consensus 65 v~lrgLP~s---------~~K~DI~~FF--~g~~I~~d~I~~~ydr~g~~~eAfV~F~S-~~d~~~AL~~l 123 (227)
+=|-|+|.. ..-.++++-| .+++ +-.|+.+|++.|-++-|.|+|.+ -.-+..|+++.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~--p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFN--PTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCC--CSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCC--CceeEecccCCCCceeEEEEecCChHHHHHHHHHH
Confidence 456677752 2336888877 6654 67799999999999999999975 45788899855
No 411
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=20.67 E-value=51 Score=26.74 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=35.5
Q ss_pred CCCCHHHHHHccCC-CcccCCceEEEe---ecCCCCcceeEEEEcCCHHHHH
Q 027131 158 RIAVAEDVERFLSG-CEYEASSISFML---RQSLPDSIKWATVRFPSQTQAM 205 (227)
Q Consensus 158 f~~tkeEI~~FFsG-~~i~p~~I~l~~---d~~~g~ptGeA~V~F~S~e~A~ 205 (227)
-+.++.||..=.+. |+.+|+-|.+.. ..|+|+.+|.|.|+ .|.+.|.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~IY-Ds~e~aK 81 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALVY-DNQQYLL 81 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEEE-SCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEe-CCHHHHH
Confidence 36678888887776 677888777774 68889999999997 4555554
No 412
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=20.15 E-value=1.1e+02 Score=24.28 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=34.0
Q ss_pred CCCHHHHHHccC-CCcccCCceEEEe---ecCCCCcceeEEEEcCCHHHHH
Q 027131 159 IAVAEDVERFLS-GCEYEASSISFML---RQSLPDSIKWATVRFPSQTQAM 205 (227)
Q Consensus 159 ~~tkeEI~~FFs-G~~i~p~~I~l~~---d~~~g~ptGeA~V~F~S~e~A~ 205 (227)
+.++.||..=++ =|+.+|+-|.+.- ..|+|+.+|.|.|+ .|.+.|.
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~IY-ds~d~ak 83 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLVY-NSVAEAK 83 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEEE-SSHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEEe-CCHHHHH
Confidence 678999988774 4566777777664 68889999999997 4554443
Done!