BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027132
MAAATSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRP
QNIESSSTSSASPDRFFDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAASG
GRMGGRSFSSHSSSSSSRTYMVEPRVGFSASAPYYAPSPFGGAGGGIYVGPAVGVGVGAG
SSLFLILMGFAAFVLVSGFLSDRSDGSVLTATDKTSVIKLQVLDLRL

High Scoring Gene Products

Symbol, full name Information P value
AT1G54520 protein from Arabidopsis thaliana 1.9e-26

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027132
        (227 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2020158 - symbol:AT1G54520 "AT1G54520" species...   298  1.9e-26   1


>TAIR|locus:2020158 [details] [associations]
            symbol:AT1G54520 "AT1G54520" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0009507 InterPro:IPR010903 Pfam:PF07466 EMBL:AY093070
            EMBL:AY085198 IPI:IPI00541383 RefSeq:NP_564660.1 UniGene:At.21420
            STRING:Q8RWI0 PaxDb:Q8RWI0 PRIDE:Q8RWI0 EnsemblPlants:AT1G54520.1
            GeneID:841894 KEGG:ath:AT1G54520 TAIR:At1g54520 eggNOG:COG4371
            HOGENOM:HOG000233779 InParanoid:Q8RWI0 OMA:RHPEYWV PhylomeDB:Q8RWI0
            ProtClustDB:CLSN2694199 Genevestigator:Q8RWI0 PIRSF:PIRSF037221
            Uniprot:Q8RWI0
        Length = 391

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 93/233 (39%), Positives = 120/233 (51%)

Query:     1 MAAATSLLELNAFKWTQLRPNPRLFPHRPAKFSANLNNFRTLQRTTTARNFNGVKCFCRP 60
             MA++++ LEL  F+W Q  P P  +  RP   +  L + +  +R+ + R    VK     
Sbjct:     1 MASSSTFLELTPFQWNQ--PLP--YTQRPHHRTVLLYS-KPQRRSNSIRLQISVKY---- 51

Query:    61 QNIESSSTSSASPD-RF-FDPLEILTNALSKSIQALKKPAVIAVVLGFLLTWDPNLAFAA 118
                   STSS+ PD R  F+P E +   + K++ +LKKPA+ AV+LG LL +DPN A AA
Sbjct:    52 ----KQSTSSSDPDLRSNFNPFEQIAIQVKKALDSLKKPAIAAVLLGLLLFYDPNSALAA 107

Query:   119 XXXXX---XXXXXXXXXXXXXXXTYMV----EPRVGFSA-SAPYYAPSPFXXXXXXXXXX 170
                                    +Y V     P   +SA +APYY PSPF          
Sbjct:   108 SGGRIGGNSFSSRSRSSSSSSSQSYSVPRTSNPSFSYSARTAPYYGPSPFGGGFVGPAVG 167

Query:   171 XXXXXXXXXXSSLFLILMGFAAFVLVSGFLSDRS-DGSVLTATDKTSVIKLQV 222
                       SS  LIL+GFAAFVLVSGFLSDRS D S+LT T KTSVIKLQV
Sbjct:   168 FGFGGF----SSFSLILVGFAAFVLVSGFLSDRSQDDSILTDTQKTSVIKLQV 216


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       187   0.00085  110 3  11 22  0.38    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  140 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.96u 0.09s 14.05t   Elapsed:  00:00:02
  Total cpu time:  13.96u 0.09s 14.05t   Elapsed:  00:00:02
  Start:  Fri May 10 01:09:52 2013   End:  Fri May 10 01:09:54 2013

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