BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027132
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VR5|A Chain A, Crystal Structure Of Oligopeptide Abc Transporter,
           Periplasmic Oligopeptide-Binding (Tm1223) From
           Thermotoga Maritima At 1.73 A Resolution
 pdb|1VR5|B Chain B, Crystal Structure Of Oligopeptide Abc Transporter,
           Periplasmic Oligopeptide-Binding (Tm1223) From
           Thermotoga Maritima At 1.73 A Resolution
          Length = 547

 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 30  AKFSANLNNFRTLQRTTTARNFNGVKCFCRPQNIESSSTSSASPDRFFDP-LEILTNALS 88
            KF   LNNF T    T    FNGV     P  +ES  + S +  ++ +P +E L + L+
Sbjct: 415 GKFDLILNNFTTGVSATIWSYFNGV---FYPDAVESEYSYSGNFGKYANPEVETLLDELN 471

Query: 89  KSIQALKKPAVIAVVLGFLL 108
           +S    K   V+A +   LL
Sbjct: 472 RSNDDAKIKEVVAKLSEILL 491


>pdb|2Z67|A Chain A, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
           Selenium Transferase (sepsecs)
 pdb|2Z67|B Chain B, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
           Selenium Transferase (sepsecs)
 pdb|2Z67|C Chain C, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
           Selenium Transferase (sepsecs)
 pdb|2Z67|D Chain D, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
           Selenium Transferase (sepsecs)
          Length = 456

 Score = 27.3 bits (59), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 74  DRFFDPLEILTNALSKSIQALKKPAVIA 101
           DR + P+E + NA+ K I+   +P V++
Sbjct: 210 DRVYVPVEDIENAIKKEIELGNRPCVLS 237


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,636,895
Number of Sequences: 62578
Number of extensions: 125816
Number of successful extensions: 166
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 3
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)