Query 027132
Match_columns 227
No_of_seqs 89 out of 91
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 05:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4371 Predicted membrane pro 99.9 5E-22 1.1E-26 179.9 13.1 101 114-226 43-155 (334)
2 PF07466 DUF1517: Protein of u 99.8 2.7E-21 5.9E-26 173.0 9.6 107 116-227 1-116 (289)
3 COG4371 Predicted membrane pro 82.2 1.9 4.1E-05 40.6 4.2 29 180-208 99-129 (334)
4 PF07466 DUF1517: Protein of u 80.5 5.7 0.00012 36.5 6.6 10 118-127 7-16 (289)
5 KOG0921 Dosage compensation co 69.7 5.8 0.00013 43.0 4.2 10 50-59 1082-1091(1282)
6 PLN00066 PsbP domain-containin 45.6 65 0.0014 29.9 6.2 44 105-151 59-106 (262)
7 COG4907 Predicted membrane pro 36.7 26 0.00056 35.6 2.4 7 174-180 586-592 (595)
8 KOG3875 Peroxisomal biogenesis 30.0 42 0.00092 32.5 2.5 6 162-167 88-93 (362)
9 COG3462 Predicted membrane pro 25.9 64 0.0014 27.0 2.6 8 168-175 51-58 (117)
10 PF12092 DUF3568: Protein of u 25.6 50 0.0011 27.3 1.9 17 112-128 20-36 (131)
11 KOG0921 Dosage compensation co 21.9 1.5E+02 0.0034 32.8 5.1 12 119-130 1180-1191(1282)
12 PF15240 Pro-rich: Proline-ric 20.9 61 0.0013 28.7 1.7 18 98-115 2-19 (179)
No 1
>COG4371 Predicted membrane protein [Function unknown]
Probab=99.88 E-value=5e-22 Score=179.85 Aligned_cols=101 Identities=35% Similarity=0.427 Sum_probs=75.3
Q ss_pred hhhhh-cCCcccCCCCCCCCCCCCCCccc--cCCCCCCCCCCCCCCCCCCCCCCCce---eecccccccccC-chhHHHH
Q 027132 114 LAFAA-SGGRMGGRSFSSHSSSSSSRTYM--VEPRVGFSASAPYYAPSPFGGAGGGI---YVGPAVGVGVGA-GSSLFLI 186 (227)
Q Consensus 114 ~A~AA-SGGRiGGgSFrS~SssSspRSYs--~p~~~~ygYg~~gY~~SPfgy~GGGf---Fl~P~fGfGgGg-G~~~fli 186 (227)
.|+|| |||||||+|||+||.. +|+|+ .|+.++|+ +++| + |||| |+||.+|+|+|+ |+|.+|+
T Consensus 43 ~a~aarSGGriGGgSfraps~~--sr~YS~~gpsGGgY~--gg~Y-----~--GGGfgfPfiip~~G~GGGfgGiFgilv 111 (334)
T COG4371 43 VAAAARSGGRIGGGSFRAPSGY--SRGYSGGGPSGGGYS--GGGY-----S--GGGFGFPFIIPGGGGGGGFGGIFGILV 111 (334)
T ss_pred HHHHHhhCCCccCCCCCCCCCC--CCCcCCCCCCCCCCC--CCCC-----C--CCCcCcCeEeccCCcCCccccHHHHHH
Confidence 35555 9999999999999742 48998 35554433 2234 3 6776 999999998874 8899999
Q ss_pred HHHHHHHHhhhhhcccCC-----CCCcccCCCceEEEEEeeeccc
Q 027132 187 LMGFAAFVLVSGFLSDRS-----DGSVLTATDKTSVIKLQVLDLR 226 (227)
Q Consensus 187 Li~iag~v~V~~F~~~~~-----~g~~~~~~~~VSV~kLQVGLLa 226 (227)
|++|+. ++|..||..-+ +.....++|+|.+.++||||||
T Consensus 112 f~aian-~vv~~~Rr~~ssGe~~g~~~~~S~ptv~~~~vQvgLLA 155 (334)
T COG4371 112 FGAIAN-GVVGMMRRNLSSGEARGLSSLGSSPTVQAVSVQVGLLA 155 (334)
T ss_pred HHHHHH-HHHHHHHhcCCCCCcCCccccCCCCceeEEeeeehhhh
Confidence 999988 58899986311 1133346899999999999997
No 2
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=99.85 E-value=2.7e-21 Score=172.99 Aligned_cols=107 Identities=43% Similarity=0.479 Sum_probs=70.8
Q ss_pred hhhcCCcccCCCCCCCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCce---eeccccccccc-CchhHHHHHHHH
Q 027132 116 FAASGGRMGGRSFSSHS-SSSSSRTYMVEPRVGFSASAPYYAPSPFGGAGGGI---YVGPAVGVGVG-AGSSLFLILMGF 190 (227)
Q Consensus 116 ~AASGGRiGGgSFrS~S-ssSspRSYs~p~~~~ygYg~~gY~~SPfgy~GGGf---Fl~P~fGfGgG-gG~~~fliLi~i 190 (227)
+|+|||||||+||++|+ ++|+||+|+..+.+.+.+.. .| +.+|.|||+ |++|+||+|+| +|++.+|||++|
T Consensus 1 aA~SGGR~GG~SFssps~ssSspssss~s~~~~~~~s~-~~---~~~y~Ggg~g~p~l~p~~G~Ggg~~gl~~iLIl~~I 76 (289)
T PF07466_consen 1 AARSGGRMGGGSFSSPSRSSSSPSSSSPSSSGSSSPSS-GY---GGGYSGGGFGFPFLGPFFGFGGGFGGLFDILILFGI 76 (289)
T ss_pred CCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC---CCCCCCCCcCcCccccccccCcccchHHHHHHHHHH
Confidence 36799999999999885 34666766543222111110 11 112224554 88999999986 366777777777
Q ss_pred HHHHhhhhhcccC----CCCCcccCCCceEEEEEeeecccC
Q 027132 191 AAFVLVSGFLSDR----SDGSVLTATDKTSVIKLQVLDLRL 227 (227)
Q Consensus 191 ag~v~V~~F~~~~----~~g~~~~~~~~VSV~kLQVGLLa~ 227 (227)
+. ++|+.|+..+ ........+++|||+|||||||+.
T Consensus 77 a~-~vv~~~r~~~~~~~~~~~~~~~~~~vsV~klQv~Ll~~ 116 (289)
T PF07466_consen 77 AF-FVVRFFRRRRSGSQGSYGRGASNPKVSVVKLQVGLLAS 116 (289)
T ss_pred HH-HHHHHHHhhcccccccccccccCCceEEEEeeehhccc
Confidence 76 5888887543 233455678999999999999974
No 3
>COG4371 Predicted membrane protein [Function unknown]
Probab=82.24 E-value=1.9 Score=40.64 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=13.8
Q ss_pred chhHHHHHHHHHHHHhhhhhcc--cCCCCCc
Q 027132 180 GSSLFLILMGFAAFVLVSGFLS--DRSDGSV 208 (227)
Q Consensus 180 G~~~fliLi~iag~v~V~~F~~--~~~~g~~ 208 (227)
++.+|.=+.+|.-|++|..+.. .|+..+.
T Consensus 99 ~GGGfgGiFgilvf~aian~vv~~~Rr~~ss 129 (334)
T COG4371 99 GGGGFGGIFGILVFGAIANGVVGMMRRNLSS 129 (334)
T ss_pred cCCccccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444444455555445555543 2555433
No 4
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=80.47 E-value=5.7 Score=36.51 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=7.1
Q ss_pred hcCCcccCCC
Q 027132 118 ASGGRMGGRS 127 (227)
Q Consensus 118 ASGGRiGGgS 127 (227)
+.||+-...+
T Consensus 7 R~GG~SFssp 16 (289)
T PF07466_consen 7 RMGGGSFSSP 16 (289)
T ss_pred CcCCCCCCCC
Confidence 3688887765
No 5
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=69.70 E-value=5.8 Score=43.01 Aligned_cols=10 Identities=10% Similarity=-0.250 Sum_probs=5.2
Q ss_pred ccCceeeeec
Q 027132 50 NFNGVKCFCR 59 (227)
Q Consensus 50 ~~~~~~~~~~ 59 (227)
-.+-||.+|+
T Consensus 1082 VDdWIklqIs 1091 (1282)
T KOG0921|consen 1082 VDDWIKLQIS 1091 (1282)
T ss_pred eeceeeEecc
Confidence 3445555555
No 6
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=45.64 E-value=65 Score=29.87 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=25.1
Q ss_pred HHHhhcCCChhhhh----cCCcccCCCCCCCCCCCCCCccccCCCCCCCCC
Q 027132 105 GFLLTWDPNLAFAA----SGGRMGGRSFSSHSSSSSSRTYMVEPRVGFSAS 151 (227)
Q Consensus 105 ~~L~~~~~~~A~AA----SGGRiGGgSFrS~SssSspRSYs~p~~~~ygYg 151 (227)
.+.+++.|..++|+ .-||+=|=| ..++ -.=|+|.+|+.-.++||
T Consensus 59 ~~~~~~~~~~~~a~~~g~~ag~~~~~s-~~~~--~g~~~~~rp~~~~Gg~G 106 (262)
T PLN00066 59 SSAVLAFPGEGLAVKQGLLAGRVPGLS-EPDE--NGWRTYRRPEGKSGGHG 106 (262)
T ss_pred hhhhhcCCcchhhhhhcccccCCCCCC-Cccc--cceEEEecCccccCcCC
Confidence 33445678888877 357776644 2222 12378998875433443
No 7
>COG4907 Predicted membrane protein [Function unknown]
Probab=36.67 E-value=26 Score=35.62 Aligned_cols=7 Identities=57% Similarity=1.075 Sum_probs=3.4
Q ss_pred cccccCc
Q 027132 174 GVGVGAG 180 (227)
Q Consensus 174 GfGgGgG 180 (227)
|+|||||
T Consensus 586 g~GGGGG 592 (595)
T COG4907 586 GSGGGGG 592 (595)
T ss_pred CCCCCCC
Confidence 4555443
No 8
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.96 E-value=42 Score=32.51 Aligned_cols=6 Identities=67% Similarity=1.298 Sum_probs=3.2
Q ss_pred CCCCce
Q 027132 162 GAGGGI 167 (227)
Q Consensus 162 y~GGGf 167 (227)
++|||+
T Consensus 88 ~fGgGy 93 (362)
T KOG3875|consen 88 GFGGGY 93 (362)
T ss_pred ccCccc
Confidence 445665
No 9
>COG3462 Predicted membrane protein [Function unknown]
Probab=25.92 E-value=64 Score=27.00 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=5.6
Q ss_pred eecccccc
Q 027132 168 YVGPAVGV 175 (227)
Q Consensus 168 Fl~P~fGf 175 (227)
+++|++++
T Consensus 51 lImpI~~~ 58 (117)
T COG3462 51 LIMPIFWA 58 (117)
T ss_pred HHHHHHHH
Confidence 55788855
No 10
>PF12092 DUF3568: Protein of unknown function (DUF3568); InterPro: IPR021952 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 130 amino acids in length.
Probab=25.62 E-value=50 Score=27.31 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=10.2
Q ss_pred CChhhhhcCCcccCCCC
Q 027132 112 PNLAFAASGGRMGGRSF 128 (227)
Q Consensus 112 ~~~A~AASGGRiGGgSF 128 (227)
...|+++-|+.+|||-+
T Consensus 20 ~~~al~~G~aa~g~g~~ 36 (131)
T PF12092_consen 20 GVAALVAGGAAAGGGTV 36 (131)
T ss_pred hhhhhhcccccccCceE
Confidence 44556655677787643
No 11
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=21.86 E-value=1.5e+02 Score=32.81 Aligned_cols=12 Identities=58% Similarity=0.852 Sum_probs=8.4
Q ss_pred cCCcccCCCCCC
Q 027132 119 SGGRMGGRSFSS 130 (227)
Q Consensus 119 SGGRiGGgSFrS 130 (227)
||+|-||+|.+.
T Consensus 1180 SgyRRGgssysg 1191 (1282)
T KOG0921|consen 1180 SGYRRGGSSYSG 1191 (1282)
T ss_pred cccccCCCCCCC
Confidence 678888866554
No 12
>PF15240 Pro-rich: Proline-rich
Probab=20.91 E-value=61 Score=28.67 Aligned_cols=18 Identities=6% Similarity=0.109 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhcCCChh
Q 027132 98 AVIAVVLGFLLTWDPNLA 115 (227)
Q Consensus 98 a~~~ll~~~L~~~~~~~A 115 (227)
|||+|.|+||+|++++.+
T Consensus 2 LlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQST 19 (179)
T ss_pred hhHHHHHHHHHhhhcccc
Confidence 566677777777776544
Done!