Query 027132
Match_columns 227
No_of_seqs 89 out of 91
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 08:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzs_X 23-MER peptide from PEL 14.1 72 0.0025 19.6 1.3 20 98-118 4-23 (26)
2 3lay_A Zinc resistance-associa 11.3 51 0.0018 27.2 0.0 28 90-118 24-51 (175)
3 3cio_A ETK, tyrosine-protein k 9.4 96 0.0033 26.1 1.0 20 76-95 191-211 (299)
4 3j1r_A Archaeal adhesion filam 7.6 2.7E+02 0.0094 17.0 2.2 14 183-196 8-21 (26)
5 4d8b_A Streptopain; papain fol 6.8 1.7E+02 0.0058 25.4 1.5 22 5-26 5-26 (261)
6 2xhz_A KDSD, YRBH, arabinose 5 5.5 4E+02 0.014 19.7 2.7 22 73-95 7-28 (183)
7 2jen_A Xyloglucanase, endo-bet 5.4 1.3E+02 0.0044 26.0 -0.2 26 93-118 5-30 (261)
8 2ca5_A MXIH; transport protein 4.8 8.2E+02 0.028 18.4 4.0 23 74-96 17-39 (85)
9 3k7i_B IHH, HHG-2, indian hedg 3.9 7.4E+02 0.025 21.1 3.5 36 9-44 28-68 (187)
10 3ts9_A Interferon-induced heli 3.9 6.3E+02 0.021 20.4 2.9 23 74-96 4-26 (138)
No 1
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=14.08 E-value=72 Score=19.62 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhcCCChhhhh
Q 027132 98 AVIAVVLGFLLTWDPNLAFAA 118 (227)
Q Consensus 98 a~~~ll~~~L~~~~~~~A~AA 118 (227)
++.-+++++|+ ...++++||
T Consensus 4 li~piAaGLLL-a~sqp~lAa 23 (26)
T 1tzs_X 4 LLPTAAAGLLL-LAAQPAMAM 23 (26)
T ss_pred hhhhHHHHHHH-HhcChHhhh
Confidence 44445555554 345667766
No 2
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=11.33 E-value=51 Score=27.23 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHhhcCCChhhhh
Q 027132 90 SIQALKKPAVIAVVLGFLLTWDPNLAFAA 118 (227)
Q Consensus 90 ~~~~l~kpa~~~ll~~~L~~~~~~~A~AA 118 (227)
+.|..+|..++++++.+|++. ..+|+|.
T Consensus 24 ~Mk~~kk~~la~~al~~l~l~-s~~A~A~ 51 (175)
T 3lay_A 24 AMKRNNKSAIALIALSLLALS-SGAAFAG 51 (175)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hHHHHhc
Confidence 344455555544444433332 4457776
No 3
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=9.45 E-value=96 Score=26.09 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=10.2
Q ss_pred CCChHHHH-HHHHHHHHHHhh
Q 027132 76 FFDPLEIL-TNALSKSIQALK 95 (227)
Q Consensus 76 ~~np~~~~-~~~l~~~~~~l~ 95 (227)
..||.+++ .+.+.+.++.+.
T Consensus 191 ~~~~~ell~~~~l~~ll~~l~ 211 (299)
T 3cio_A 191 PPNPSELLMRDRMRQLLEWAN 211 (299)
T ss_dssp CSCHHHHHTSHHHHHHHHHHH
T ss_pred CCCHHHHhCHHHHHHHHHHHH
Confidence 35777653 334444555443
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=7.60 E-value=2.7e+02 Score=17.04 Aligned_cols=14 Identities=57% Similarity=0.781 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhh
Q 027132 183 LFLILMGFAAFVLV 196 (227)
Q Consensus 183 ~fliLi~iag~v~V 196 (227)
.+||++++++.+++
T Consensus 8 ~lLIviav~aaVll 21 (26)
T 3j1r_A 8 LLLILIAVAAAVLL 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56778887775443
No 5
>4d8b_A Streptopain; papain fold, cysteine protease, secreted, hydrolase; 1.06A {Streptococcus pyogenes} PDB: 4d8e_A* 4d8i_A* 2uzj_A* 2jtc_A
Probab=6.84 E-value=1.7e+02 Score=25.40 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.8
Q ss_pred ccccccccccccCCCCCCCCCC
Q 027132 5 TSLLELNAFKWTQLRPNPRLFP 26 (227)
Q Consensus 5 ~~~l~~~~~~w~~~~~~~~~~~ 26 (227)
.+||+..+.+|+|--||-..-|
T Consensus 5 ~pll~~~~i~W~Q~~PYN~~~P 26 (261)
T 4d8b_A 5 KSLLNSKGIHYNQGNPYNLLTP 26 (261)
T ss_dssp CCHHHHTTCBCCSSTTTCTTSC
T ss_pred ccccccCCCccCCCCChhhhCC
Confidence 5789999999999999977644
No 6
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=5.47 E-value=4e+02 Score=19.75 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=12.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHhh
Q 027132 73 PDRFFDPLEILTNALSKSIQALK 95 (227)
Q Consensus 73 ~dr~~np~~~~~~~l~~~~~~l~ 95 (227)
+||+ |+.+++.+.+....+.+.
T Consensus 7 ~~~~-~~~~~~~~~~~~~~~~l~ 28 (183)
T 2xhz_A 7 QPGF-DFQQAGKEVLAIERECLA 28 (183)
T ss_dssp -----CHHHHHHHHHHHHHHHHT
T ss_pred CCcc-cHHHHHHHHHHHHHHHHH
Confidence 6777 888888877666655443
No 7
>2jen_A Xyloglucanase, endo-beta-1,4-glucanase; plant cell WALL, glycosidase, hydrolase, family 12; HET: GLC BGC DIO; 1.4A {Bacillus licheniformis} PDB: 2jem_A
Probab=5.37 E-value=1.3e+02 Score=26.04 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=0.7
Q ss_pred HhhhHHHHHHHHHHHhhcCCChhhhh
Q 027132 93 ALKKPAVIAVVLGFLLTWDPNLAFAA 118 (227)
Q Consensus 93 ~l~kpa~~~ll~~~L~~~~~~~A~AA 118 (227)
+|.|.+++++++.++++..+..|.|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~a~a~ 30 (261)
T 2jen_A 5 HLLKSILLWGAVCIIVLAGPLSAFAA 30 (261)
T ss_dssp ------------------------CE
T ss_pred HHHHHHHHHHHHHHHHhcCcccchhh
Confidence 45555555555544444433334433
No 8
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=4.84 E-value=8.2e+02 Score=18.42 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.0
Q ss_pred CCCCChHHHHHHHHHHHHHHhhh
Q 027132 74 DRFFDPLEILTNALSKSIQALKK 96 (227)
Q Consensus 74 dr~~np~~~~~~~l~~~~~~l~k 96 (227)
+-|+++-..|-+.+.++++.|.+
T Consensus 17 ~~f~~ga~~~~~~v~~Ai~~L~~ 39 (85)
T 2ca5_A 17 ETFDDGTQTLQGELTLALDKLAK 39 (85)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56788999999999999998886
No 9
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=3.91 E-value=7.4e+02 Score=21.10 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=22.3
Q ss_pred ccccccccCCCCCCCC-----CCCCCccccccccccccccc
Q 027132 9 ELNAFKWTQLRPNPRL-----FPHRPAKFSANLNNFRTLQR 44 (227)
Q Consensus 9 ~~~~~~w~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 44 (227)
+++|+..+|..|+... .-..--++...-|.|+.|.+
T Consensus 28 ~~tplv~kq~vPn~sE~tlgASG~~eg~I~r~~~~Fk~Lv~ 68 (187)
T 3k7i_B 28 KLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTP 68 (187)
T ss_dssp CCCCCCTTCEESSSCTTSTTTTCCCCCCCCTTSGGGGGCEE
T ss_pred cccceeecccCCCCCccccCCcCcccCcccCCCcccccccc
Confidence 4788888888887433 12222345555677777765
No 10
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=3.85 E-value=6.3e+02 Score=20.42 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=15.6
Q ss_pred CCCCChHHHHHHHHHHHHHHhhh
Q 027132 74 DRFFDPLEILTNALSKSIQALKK 96 (227)
Q Consensus 74 dr~~np~~~~~~~l~~~~~~l~k 96 (227)
||-+|||.-+.+.|-+.+..+.+
T Consensus 4 ~r~~DPF~d~l~~iM~~Ie~~~~ 26 (138)
T 3ts9_A 4 DTRENPFKEKLLEIMASIQTYCQ 26 (138)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHc
Confidence 68899999888877777776654
Done!