Query 027132
Match_columns 227
No_of_seqs 89 out of 91
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 08:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027132.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027132hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f7ua3 d.67.2.1 (A:2-135) Arg 8.4 1.1E+02 0.0079 22.1 2.8 18 77-94 28-45 (134)
2 d2hyda2 f.37.1.1 (A:1-323) Put 5.5 1.5E+02 0.011 20.8 2.3 23 84-106 2-24 (323)
3 d3d1ma1 d.65.1.2 (A:41-188) So 4.7 2.8E+02 0.021 21.0 3.4 34 11-44 1-39 (148)
4 d1pd0a3 c.62.1.2 (A:301-552) S 4.5 1.9E+02 0.014 21.7 2.3 24 73-96 89-112 (252)
5 d2p02a3 d.130.1.1 (A:274-417) 4.3 1.3E+02 0.0092 22.6 1.0 11 121-131 24-34 (144)
6 d1kqfb2 f.23.22.1 (B:246-290) 4.2 3E+02 0.022 16.9 2.7 15 91-105 8-22 (45)
7 d1lvfa_ a.47.2.1 (A:) Syntaxin 4.1 3.7E+02 0.027 18.0 3.5 21 77-97 1-21 (106)
8 d1kzqa2 b.6.2.1 (A:132-255) Ma 4.1 2.2E+02 0.016 20.2 2.3 36 29-64 61-96 (124)
9 d2j4wd1 g.61.1.1 (D:421-454) A 3.8 98 0.0072 18.5 0.0 16 51-66 7-22 (34)
10 d2j5la1 g.61.1.1 (A:479-512) A 3.7 1.2E+02 0.0091 18.0 0.4 16 51-66 7-22 (34)
No 1
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.39 E-value=1.1e+02 Score=22.06 Aligned_cols=18 Identities=11% Similarity=0.433 Sum_probs=15.1
Q ss_pred CChHHHHHHHHHHHHHHh
Q 027132 77 FDPLEILTNALSKSIQAL 94 (227)
Q Consensus 77 ~np~~~~~~~l~~~~~~l 94 (227)
.||.|++|+.+.+.|.++
T Consensus 28 ~n~~D~~R~~Ia~~L~~i 45 (134)
T d1f7ua3 28 VNIVDLMRNYISQELSKI 45 (134)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHH
Confidence 489999999999887654
No 2
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=5.52 E-value=1.5e+02 Score=20.81 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 027132 84 TNALSKSIQALKKPAVIAVVLGF 106 (227)
Q Consensus 84 ~~~l~~~~~~l~kpa~~~ll~~~ 106 (227)
.|.+++-+|+.+|.+++++++.+
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~ 24 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGI 24 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777887776666665544
No 3
>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.74 E-value=2.8e+02 Score=20.95 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=19.7
Q ss_pred ccccccCCCCCCCC-----CCCCCccccccccccccccc
Q 027132 11 NAFKWTQLRPNPRL-----FPHRPAKFSANLNNFRTLQR 44 (227)
Q Consensus 11 ~~~~w~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 44 (227)
+|+..||..|+... .-...-++...-+.|+.|++
T Consensus 1 tpl~~kq~vP~~sE~t~gAsG~~eg~I~R~~~rfk~Lv~ 39 (148)
T d3d1ma1 1 TPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTP 39 (148)
T ss_dssp CCCCTTCEESSSCTTSTTTTCCCCCCCCTTSSGGGGCEE
T ss_pred CCceeeccCCCCCcccccccCCCCCCcCCCChhhhhccc
Confidence 58888888887433 11112244455566777664
No 4
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.54 E-value=1.9e+02 Score=21.74 Aligned_cols=24 Identities=8% Similarity=0.265 Sum_probs=13.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhh
Q 027132 73 PDRFFDPLEILTNALSKSIQALKK 96 (227)
Q Consensus 73 ~dr~~np~~~~~~~l~~~~~~l~k 96 (227)
++++.-|++.-++.+.+.|+.|.+
T Consensus 89 ~~~~lv~~~e~~~~i~~~L~~l~~ 112 (252)
T d1pd0a3 89 PNSMVVSLKACRQNIETLLTKIPQ 112 (252)
T ss_dssp -TTTSEETTTTHHHHHHHHHHHHH
T ss_pred CccceeeHHHHHHHHHHHHHhChh
Confidence 345555655566666666655533
No 5
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=4.29 E-value=1.3e+02 Score=22.60 Aligned_cols=11 Identities=45% Similarity=0.854 Sum_probs=8.9
Q ss_pred CcccCCCCCCC
Q 027132 121 GRMGGRSFSSH 131 (227)
Q Consensus 121 GRiGGgSFrS~ 131 (227)
+++|||+|+--
T Consensus 24 ~~hGGGafsgK 34 (144)
T d2p02a3 24 GAHGGGAFSGK 34 (144)
T ss_dssp SCCCSCCCTTB
T ss_pred cccCCcCCCCC
Confidence 57899999853
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.24 E-value=3e+02 Score=16.95 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=6.4
Q ss_pred HHHhhhHHHHHHHHH
Q 027132 91 IQALKKPAVIAVVLG 105 (227)
Q Consensus 91 ~~~l~kpa~~~ll~~ 105 (227)
+|-..||+.++.+.+
T Consensus 8 WKgv~Kpl~~~~~~~ 22 (45)
T d1kqfb2 8 WKGALKPLAAAGFIA 22 (45)
T ss_dssp HHTTHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHH
Confidence 344444444443333
No 7
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.15 E-value=3.7e+02 Score=18.00 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHHHHHHhhhH
Q 027132 77 FDPLEILTNALSKSIQALKKP 97 (227)
Q Consensus 77 ~np~~~~~~~l~~~~~~l~kp 97 (227)
+||+-.+++-+++.++.+...
T Consensus 1 eDPF~~v~~EVq~s~~~~~~l 21 (106)
T d1lvfa_ 1 EDPFFVVKGEVQKAVNTAQGL 21 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 589999888888888766543
No 8
>d1kzqa2 b.6.2.1 (A:132-255) Major surface antigen p30, SAG1 {Toxoplasma gondii [TaxId: 5811]}
Probab=4.14 E-value=2.2e+02 Score=20.21 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=26.3
Q ss_pred CccccccccccccccccccccccCceeeeecCCccc
Q 027132 29 PAKFSANLNNFRTLQRTTTARNFNGVKCFCRPQNIE 64 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (227)
..++..|||+|...+-+......++.++.|-+..+.
T Consensus 61 ~~~~~~iLp~~~~~wWt~~~~~~~~~tLtIP~~~fP 96 (124)
T d1kzqa2 61 EKSFKDILPKLTENPWQGNASSDKGATLTIKKEAFP 96 (124)
T ss_dssp EEEGGGTCSSCCSCCEEEESSSSSEEEEECCTTCCC
T ss_pred ccchHHhcCCCccCEEEecCCCCceEEEEeCcccCC
Confidence 356899999999888775555557788888755543
No 9
>d2j4wd1 g.61.1.1 (D:421-454) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=3.82 E-value=98 Score=18.46 Aligned_cols=16 Identities=38% Similarity=0.835 Sum_probs=12.1
Q ss_pred cCceeeeecCCcccCC
Q 027132 51 FNGVKCFCRPQNIESS 66 (227)
Q Consensus 51 ~~~~~~~~~~~~~~~~ 66 (227)
.+++||-|.|..++.+
T Consensus 7 k~slkcpcep~~is~s 22 (34)
T d2j4wd1 7 KESIKCPCEPERISES 22 (34)
T ss_dssp GGGGCCSSCCEEEESS
T ss_pred cccccCCCChhhcccC
Confidence 3789999998776543
No 10
>d2j5la1 g.61.1.1 (A:479-512) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=3.75 E-value=1.2e+02 Score=17.98 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=12.1
Q ss_pred cCceeeeecCCcccCC
Q 027132 51 FNGVKCFCRPQNIESS 66 (227)
Q Consensus 51 ~~~~~~~~~~~~~~~~ 66 (227)
.+++||-|.|.-++.+
T Consensus 7 k~slkCPCeP~~~s~S 22 (34)
T d2j5la1 7 KDSLKCPCDPEMVSQS 22 (34)
T ss_dssp SGGGCCSSCCEECCCS
T ss_pred cccccCCCChhhhccC
Confidence 3789999998776543
Done!