BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027133
MMTETCAFCFVSPYSSIPSVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFNFLPW
AHRIEWVQEERVTLFTADGLVQIGGSMVPRRVSSSTSDKKQGRSKSSQRFQRFQESDYMD
PNQRLCLGALFDIAATNGLDMGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASK
GGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGIVEKVYWQWDFL

High Scoring Gene Products

Symbol, full name Information P value
AT2G36895 protein from Arabidopsis thaliana 1.1e-71

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027133
        (227 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1005716637 - symbol:AT2G36895 "AT2G36895" spec...   725  1.1e-71   1


>TAIR|locus:1005716637 [details] [associations]
            symbol:AT2G36895 "AT2G36895" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AY136438
            EMBL:BT000223 EMBL:AK226507 IPI:IPI00522407 RefSeq:NP_850272.1
            UniGene:At.66403 EnsemblPlants:AT2G36895.1 GeneID:818263
            KEGG:ath:AT2G36895 TAIR:At2g36895 HOGENOM:HOG000006349
            InParanoid:Q8L771 OMA:LLWGVPP ProtClustDB:CLSN2680083
            Genevestigator:Q8L771 Uniprot:Q8L771
        Length = 232

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 149/235 (63%), Positives = 178/235 (75%)

Query:     2 MTETCAFCFVSPYSSIPSVSRCLRE-PNSFLLTSVSYR-RSSRFL----RFTADAASDSF 55
             M ET    F S +SS  ++S   +  P++   +S+  R R SRF      +   +  D+F
Sbjct:     1 MAETSTLLF-STFSSHLTISPFRQSHPSAARFSSLLSRVRPSRFAVKASHYGNFSDDDAF 59

Query:    56 NFLPWA---HRIEWVQEERVTLFTADGLVQIGGSMVPRRVSSSTSDKKQGRSKSSQRFQR 112
             NF PW+   + IEWV EER+TLFT+DGLVQIGG+MVPRR+ SS  +KK GRS+S ++ Q+
Sbjct:    60 NFFPWSDANNEIEWVPEERITLFTSDGLVQIGGNMVPRRIKSS--NKKHGRSRSLEKHQK 117

Query:   113 FQESDYMDPNQRLCLGALFDIAATNGLDMGRRLCILGFCRSIEMLSDVVEDTVLEHGGEV 172
             F ES YMDP Q LCLGALFDIAATNGLDMGRRLCI GFCRS+EMLSDVVEDTVLEHGGE+
Sbjct:   118 FHESAYMDPAQGLCLGALFDIAATNGLDMGRRLCIFGFCRSVEMLSDVVEDTVLEHGGEI 177

Query:   173 VAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGIVEKVYWQWDFL 227
             VA E  S  GL EKLTMTVAVP+LWGVPPA+E LHLAV++GGGIV+KVYWQW FL
Sbjct:   178 VATETESTSGLQEKLTMTVAVPYLWGVPPAAERLHLAVRTGGGIVDKVYWQWHFL 232


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.134   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       227   0.00079  113 3  11 22  0.36    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  185 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.90u 0.11s 19.01t   Elapsed:  00:00:01
  Total cpu time:  18.90u 0.11s 19.01t   Elapsed:  00:00:01
  Start:  Fri May 10 01:10:46 2013   End:  Fri May 10 01:10:47 2013

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