BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027133
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H7A|A Chain A, Crystal Structure Of Casb From Thermus Thermophilus
 pdb|4H7A|B Chain B, Crystal Structure Of Casb From Thermus Thermophilus
          Length = 168

 Score = 27.7 bits (60), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 11  VSPYSSIPSVSRCLREPNSFLLTSVSYRRSSRFLRFTADAASDSFNFL-PWAHRIEWVQE 69
           +SP        + L+   ++     ++RRS   L F   A   +  ++ P+  + +W QE
Sbjct: 13  MSPGERFLDWLKRLQGQKAWTAARAAFRRS---LAFPPGAYPRAMPYVEPFLAKGDWRQE 69

Query: 70  ERVTLFTADGLVQI--GGSMVPRRVSSSTSDKKQGRSKSSQRFQRFQESD 117
           ER   +    L  +  G   V R ++ +  +K QG +   +RF    E+D
Sbjct: 70  EREAHYLVAALYALKDGDHQVGRTLARALWEKAQGSASVEKRFLALLEAD 119


>pdb|2X7M|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
           Methanopyrus Kandleri At 1.5 A Resolution
          Length = 195

 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 144 RLCILGFCRSIEMLSDVV---EDTVLEHGGEVVAAEKASK 180
           +LC++ F   I MLS +V   E+ V E+ GEV   +K +K
Sbjct: 22  KLCLVAFDGRIPMLSSIVDRFEEHVSEYLGEVKVKKKRAK 61


>pdb|2ZCA|A Chain A, Crystal Structure Of Tthb189, A Crispr-Associated Protein,
           Cse2 Family From Thermus Thermophilus Hb8
 pdb|2ZCA|B Chain B, Crystal Structure Of Tthb189, A Crispr-Associated Protein,
           Cse2 Family From Thermus Thermophilus Hb8
          Length = 169

 Score = 26.9 bits (58), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 59  PWAHRIEWVQEERVTLFTADGLVQI--GGSMVPRRVSSSTSDKKQGRSKSSQRFQRFQES 116
           P+  + +W QEER   +    L  +  G   V R ++ +  +K QG +   +RF    E+
Sbjct: 47  PFLAKGDWRQEEREAHYLVAALYALKDGDHQVGRTLARALWEKAQGSASVEKRFLALLEA 106

Query: 117 D 117
           D
Sbjct: 107 D 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,250,808
Number of Sequences: 62578
Number of extensions: 225278
Number of successful extensions: 718
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 9
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)