BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027133
         (227 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans
            GN=unc-89 PE=1 SV=3
          Length = 8081

 Score = 33.5 bits (75), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 160  VVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFL 196
            ++ DT LE  GE VA  K S G       + V VPFL
Sbjct: 6209 IILDTTLEDAGEYVATAKNSHGSASSSAVLDVTVPFL 6245


>sp|Q319X7|COBQ_PROM9 Cobyric acid synthase OS=Prochlorococcus marinus (strain MIT 9312)
           GN=cobQ PE=3 SV=1
          Length = 509

 Score = 32.0 bits (71), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 147 ILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGL--------HEKLTMTVAVPFLW 197
           I+G C  ++ML   +ED  L+ G +  + +K    GL         EKLT  ++   LW
Sbjct: 339 IIGICGGLQMLGTFLEDPFLKEGSKTFSEQKIKGIGLLPLRTTFFEEKLTRQISSESLW 397


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,000,713
Number of Sequences: 539616
Number of extensions: 2904767
Number of successful extensions: 7095
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7093
Number of HSP's gapped (non-prelim): 3
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)