Query 027133
Match_columns 227
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 08:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r5g_A CYAB; adenylyl cyclase, 45.8 49 0.0017 24.7 5.9 36 154-202 36-71 (198)
2 3al2_A DNA topoisomerase 2-bin 35.7 13 0.00043 30.4 1.3 20 200-219 147-166 (235)
3 3msh_A Hepatitis B virus X-int 34.3 11 0.00039 28.8 0.7 13 121-133 25-37 (99)
4 2a25_A Ubiquitin ligase SIAH1; 33.8 60 0.002 25.8 4.9 54 130-193 133-190 (193)
5 4id3_A DNA repair protein REV1 31.8 38 0.0013 22.4 2.9 30 142-174 10-39 (92)
6 3l3e_A DNA topoisomerase 2-bin 28.2 60 0.002 22.7 3.6 63 141-216 17-79 (107)
7 2ebw_A DNA repair protein REV1 27.1 45 0.0015 22.6 2.7 30 142-174 15-44 (97)
8 1wc3_A Adenylate cyclase; solu 26.3 1.4E+02 0.0048 23.2 5.8 34 156-202 56-89 (219)
9 4fpp_A Phosphotransferase; fou 25.7 78 0.0027 24.5 4.2 29 160-194 218-246 (247)
10 3l46_A Protein ECT2; alternati 24.1 58 0.002 24.2 3.1 28 144-174 26-53 (112)
11 1u8s_A Glycine cleavage system 23.9 1.9E+02 0.0065 21.8 6.0 64 141-211 3-67 (192)
12 1wf6_A Similar to S.pombe -RAD 23.0 71 0.0024 23.4 3.3 67 141-224 42-108 (132)
13 2nte_A BARD-1, BRCA1-associate 21.9 66 0.0023 24.6 3.1 35 181-218 102-136 (210)
14 4e5v_A Putative THUA-like prot 21.7 1.1E+02 0.0036 25.7 4.6 76 141-217 4-90 (281)
15 2d8m_A DNA-repair protein XRCC 21.3 2.2E+02 0.0076 20.6 5.7 59 143-217 26-84 (129)
16 3fyb_A Protein of unknown func 20.8 29 0.001 27.2 0.8 25 146-172 38-62 (104)
17 2dhx_A Poly (ADP-ribose) polym 20.5 40 0.0014 26.0 1.5 27 196-222 13-45 (104)
18 3boe_A Cadmium-specific carbon 20.1 59 0.002 28.0 2.6 79 126-219 57-142 (210)
No 1
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=45.79 E-value=49 Score=24.72 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCc
Q 027133 154 IEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPA 202 (227)
Q Consensus 154 iemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa 202 (227)
++.+.+.+.+.|.+|||.|+-.. ++ ++=.+||.|..
T Consensus 36 l~~~~~~~~~~i~~~~G~v~k~~----GD---------~~~a~fg~p~~ 71 (198)
T 3r5g_A 36 LNNYLNEMSKIALKYGGTIDKFV----GD---------CVMVFFGDPST 71 (198)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEE----TT---------EEEEEESSSSC
T ss_pred HHHHHHHHHHHHHHcCCEEEeee----CC---------EEEEEECCCcc
Confidence 45567788899999999987552 22 44567999986
No 2
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=35.71 E-value=13 Score=30.37 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=17.5
Q ss_pred CCchhHHHHHHHhCCceeEE
Q 027133 200 PPASETLHLAVQSGGGIVEK 219 (227)
Q Consensus 200 PPa~E~L~~AirsGGGIVeK 219 (227)
+|..+.|...|++|||+|-+
T Consensus 147 ~~~~~~l~~ii~agGg~vl~ 166 (235)
T 3al2_A 147 QSREAGFKRLLQSGGAKVLP 166 (235)
T ss_dssp HHHHHHHHHHHHHTTCEECS
T ss_pred CCcHHHHHHHHHcCCcEEec
Confidence 57788999999999999954
No 3
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=34.33 E-value=11 Score=28.82 Aligned_cols=13 Identities=31% Similarity=0.273 Sum_probs=9.8
Q ss_pred CCCceecceeeee
Q 027133 121 PNQRLCLGALFDI 133 (227)
Q Consensus 121 p~QgLClGA~F~I 133 (227)
+.||||||+-=++
T Consensus 25 D~qGLcLg~~G~~ 37 (99)
T 3msh_A 25 DSQGLNLGCRGTL 37 (99)
T ss_dssp CTTCCEEEEEETC
T ss_pred CCCCCcccccCCC
Confidence 5699999985443
No 4
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=33.77 E-value=60 Score=25.80 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=34.7
Q ss_pred eeeeeeccCCCCCceeEEeeechhh-hhhHHHHHHHHhhccCeEEEeehhh---ccCcceeeEeeEee
Q 027133 130 LFDIAATNGLDMGRRLCILGFCRSI-EMLSDVVEDTVLEHGGEVVAAEKAS---KGGLHEKLTMTVAV 193 (227)
Q Consensus 130 ~F~IAATNGlD~gRRlci~GFCrSi-emLsdvVEDtVLe~GGEVv~aek~~---k~GlHEkL~MTVAv 193 (227)
.++|.++. .+|||-..++|+|+ |.+.++. .+ +.=+++--... -+| ++|+|.|.|
T Consensus 133 ~Y~l~~~~---~~r~L~~~~~~~s~~e~~~~~~----~~-~d~L~ip~~~~~~f~~~--~~L~l~v~I 190 (193)
T 2a25_A 133 AYRLELNG---HRRRLTWEATPRSIHEGIATAI----MN-SDCLVFDTSIAQLFAEN--GNLGINVTI 190 (193)
T ss_dssp EEEEEEEE---TTEEEEEEECCEETTTCSHHHH----HT-TCSEEEEHHHHHHHCSS--SEEEEEEEE
T ss_pred EEEEEEEc---CCCEEEEEEEEEehhhcccccc----cC-CCEEEEcHHHHHhhcCC--CeEEEEEEE
Confidence 67888874 58999999999998 6666533 22 33333333322 122 578888876
No 5
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=31.76 E-value=38 Score=22.38 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=20.2
Q ss_pred CceeEEeeechhhhhhHHHHHHHHhhccCeEEE
Q 027133 142 GRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVA 174 (227)
Q Consensus 142 gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~ 174 (227)
|-++||-|+... -.+-++..|.++||.+.-
T Consensus 10 g~~~~i~g~~~~---~~~~l~~~i~~~GG~~~~ 39 (92)
T 4id3_A 10 NCVIYINGYTKP---GRLQLHEMIVLHGGKFLH 39 (92)
T ss_dssp TCEEEECSCCSS---CHHHHHHHHHHTTCEEES
T ss_pred CEEEEEeCCCCc---CHHHHHHHHHHCCCEEEE
Confidence 456777775422 134577888999999873
No 6
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=28.19 E-value=60 Score=22.70 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=38.0
Q ss_pred CCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCce
Q 027133 141 MGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGI 216 (227)
Q Consensus 141 ~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGI 216 (227)
-|-.+||-|+.. +-.+-+++.+..+||.|.- .+-.+.|--|+-. ..-+....++.|.+.|-=|
T Consensus 17 ~g~~i~isg~~~---~~r~~l~~li~~~Gg~v~~-------~~s~~~THlI~~~---~~~~~~~K~~~A~~~gi~I 79 (107)
T 3l3e_A 17 HKVVVCVSKKLS---KKQSELNGIAASLGADYRR-------SFDETVTHFIYQG---RPNDTNREYKSVKERGVHI 79 (107)
T ss_dssp TTCEEEECGGGG---GGHHHHHHHHHHTTCEEES-------SCCTTCCEEECCC---CTTCCCHHHHHHHHTTCEE
T ss_pred CCeEEEEeCCCh---HhHHHHHHHHHHcCCEEec-------cccCCceEEEecC---CCCCCCHHHHHHHHCCCeE
Confidence 356778888764 4456778889999999853 2334444444421 1223346778888854333
No 7
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=27.06 E-value=45 Score=22.61 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=18.8
Q ss_pred CceeEEeeechhhhhhHHHHHHHHhhccCeEEE
Q 027133 142 GRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVA 174 (227)
Q Consensus 142 gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~ 174 (227)
|-++||-|+-. .-.+-++..|.++||.+..
T Consensus 15 g~~~~isg~~~---~~~~~L~~~i~~~GG~~~~ 44 (97)
T 2ebw_A 15 GVAIYVNGYTD---PSAEELRKLMMLHGGQYHV 44 (97)
T ss_dssp TCEEEECSSCS---SCHHHHHHHHHHTTCEECS
T ss_pred CeEEEEeCCCc---ccHHHHHHHHHHcCCEEee
Confidence 44555555421 1245678889999999753
No 8
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=26.33 E-value=1.4e+02 Score=23.16 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=23.4
Q ss_pred hhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCc
Q 027133 156 MLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPA 202 (227)
Q Consensus 156 mLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa 202 (227)
.+.+.+.+.|.+|||.|.-. -++ ++=.+||.|..
T Consensus 56 ~~~~~~~~~i~~~gG~v~k~----iGD---------~~ma~fg~p~~ 89 (219)
T 1wc3_A 56 EYLGEMTRAVFENQGTVDKF----VGD---------AIMALYGAPEE 89 (219)
T ss_dssp HHHHHHHHHHHHTTCEEEEE----ETT---------EEEEEESSSSC
T ss_pred HHHHHHHHHHHHcCCEEEEE----EcC---------eEEEEECCCCC
Confidence 34566788899999998742 122 45567999964
No 9
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=25.68 E-value=78 Score=24.53 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=21.3
Q ss_pred HHHHHHhhccCeEEEeehhhccCcceeeEeeEeee
Q 027133 160 VVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVP 194 (227)
Q Consensus 160 vVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvP 194 (227)
+|..-|..|||+|-+. +..| ..++||-+|
T Consensus 218 i~~~iv~~hGG~i~v~---s~~~---G~~f~v~LP 246 (247)
T 4fpp_A 218 YLNALVRAAGGQIAVE---IGED---RASIAAWVP 246 (247)
T ss_dssp HHHHHHHHTTCEEEEE---EETT---EEEEEEEEE
T ss_pred HHHHHHHHcCCEEEEE---EcCC---EEEEEEEec
Confidence 4677789999999864 2233 578888887
No 10
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=24.12 E-value=58 Score=24.24 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=21.9
Q ss_pred eeEEeeechhhhhhHHHHHHHHhhccCeEEE
Q 027133 144 RLCILGFCRSIEMLSDVVEDTVLEHGGEVVA 174 (227)
Q Consensus 144 Rlci~GFCrSiemLsdvVEDtVLe~GGEVv~ 174 (227)
++|+-||-. .| ..-+++.|.++||++..
T Consensus 26 ~Ic~sGf~~-~e--r~~l~~~i~~~GG~~~~ 53 (112)
T 3l46_A 26 ILSFLGFSD-EE--KTNMEEMTEMQGGKYLP 53 (112)
T ss_dssp EECEESCCH-HH--HHHHHHHHHHTTCEECC
T ss_pred EEEEeCCCH-HH--HHHHHHHHHHcCCEECc
Confidence 889999874 23 45688999999999863
No 11
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=23.91 E-value=1.9e+02 Score=21.79 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=45.5
Q ss_pred CCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCC-CchhHHHHHHH
Q 027133 141 MGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVP-PASETLHLAVQ 211 (227)
Q Consensus 141 ~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVP-Pa~E~L~~Air 211 (227)
|..++-|.=+|..---|...|-..+.++|+.|+.+.-.. ....+.|++-|- .| ...+.|+.++.
T Consensus 3 m~~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~---~~~~f~~~~~v~----~~~~~~~~l~~~L~ 67 (192)
T 1u8s_A 3 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM---FGKEFTLLMLIS----GSPSNITRVETTLP 67 (192)
T ss_dssp CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE---ETTEEEEEEEEE----ECHHHHHHHHHHHH
T ss_pred CCcEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee---cCCceEEEEEEe----cCCCCHHHHHHHHH
Confidence 455677777888777888888899999999999877665 345566665543 22 25667776665
No 12
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=22.95 E-value=71 Score=23.42 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=38.8
Q ss_pred CCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCceeEEE
Q 027133 141 MGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGIVEKV 220 (227)
Q Consensus 141 ~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGIVeKv 220 (227)
-|-+++|-||. +.-.+.++..+..+||+|+. -+-+..|=-|+-- | ...++.+++...+.+.=|
T Consensus 42 ~g~~i~i~G~~---~~~~~~L~~~i~~~Gg~v~~-------~l~~~vTHvI~~~-----~--~~~~~~~~~~~~~~~~iV 104 (132)
T 1wf6_A 42 DGCRIYLCGFS---GRKLDKLRRLINSGGGVRFN-------QLNEDVTHVIVGD-----Y--DDELKQFWNKSAHRPHVV 104 (132)
T ss_dssp TTCEEEEESCC---SHHHHHHHHHHHHTTCEEES-------SCCSSCCEEEESS-----C--CSHHHHHHHHSCCCCCEE
T ss_pred CCEEEEEECCC---hHHHHHHHHHHHHCCCEEeC-------cCCCCCeEEEECC-----c--hHHHHHHHHhhCCCCeEe
Confidence 36688888883 23346678888999999964 2334555444421 2 235666666543333334
Q ss_pred EEee
Q 027133 221 YWQW 224 (227)
Q Consensus 221 y~qW 224 (227)
.-||
T Consensus 105 ~~~W 108 (132)
T 1wf6_A 105 GAKW 108 (132)
T ss_dssp EHHH
T ss_pred chHH
Confidence 4455
No 13
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=21.88 E-value=66 Score=24.64 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=23.9
Q ss_pred cCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCceeE
Q 027133 181 GGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGIVE 218 (227)
Q Consensus 181 ~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGIVe 218 (227)
.+|.+-++.-+.-++ .+|..+.|..-|+.|||.|-
T Consensus 102 ~~lF~g~~~~l~~~~---~~~~~~~l~~lI~~~GG~v~ 136 (210)
T 2nte_A 102 PKLFDGCYFYLWGTF---KHHPKDNLIKLVTAGGGQIL 136 (210)
T ss_dssp CCTTTTCEEEECSCC---SSSCHHHHHHHHHHTTCEEE
T ss_pred ccccCceEEEEeccC---CCCCHHHHHHHHHHCCCEEE
Confidence 456665554332222 45788999999999999764
No 14
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=21.74 E-value=1.1e+02 Score=25.72 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=44.9
Q ss_pred CCceeEEeeec-hhhhhhHHHHHHHHhhcc-CeEEEeehhh----ccCcceeeE-eeEeeeeecc--C--CCchhHHHHH
Q 027133 141 MGRRLCILGFC-RSIEMLSDVVEDTVLEHG-GEVVAAEKAS----KGGLHEKLT-MTVAVPFLWG--V--PPASETLHLA 209 (227)
Q Consensus 141 ~gRRlci~GFC-rSiemLsdvVEDtVLe~G-GEVv~aek~~----k~GlHEkL~-MTVAvPlLwG--V--PPa~E~L~~A 209 (227)
+-|=|.|-|-| -.++.-.+.+.+...+.| =+|..++-.. .+.+.|+|. .-|-| +-+. + +.+.+.|...
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV-~~~~~~~l~~~~~~~l~~y 82 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVV-LDYNGDSWPEETNRRFLEY 82 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEE-ECCCSSCCCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEE-EeCCCCcCCHHHHHHHHHH
Confidence 33445555543 346777777877777777 3777776421 123334442 22333 3332 2 3455788899
Q ss_pred HHhCCcee
Q 027133 210 VQSGGGIV 217 (227)
Q Consensus 210 irsGGGIV 217 (227)
|+.|||+|
T Consensus 83 V~~Ggglv 90 (281)
T 4e5v_A 83 VQNGGGVV 90 (281)
T ss_dssp HHTTCEEE
T ss_pred HHcCCCEE
Confidence 99999987
No 15
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.30 E-value=2.2e+02 Score=20.64 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=34.6
Q ss_pred ceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCcee
Q 027133 143 RRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGIV 217 (227)
Q Consensus 143 RRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGIV 217 (227)
-.+||-|+- .+-.+-+++.+.++||.|.- .+..+.|.-||- .+....+..|.+-|-=||
T Consensus 26 ~~i~itG~~---~~~r~~l~~~i~~~Gg~v~~-------~~s~~~ThLI~~------~~~~~K~~~A~~~gi~IV 84 (129)
T 2d8m_A 26 VVVVLSGFQ---NPFRSELRDKALELGAKYRP-------DWTRDSTHLICA------FANTPKYSQVLGLGGRIV 84 (129)
T ss_dssp EEEEEESCC---TTHHHHHHHHHHHTTEEEES-------SCCTTCCEEEES------SSSCHHHHHHHHHTCEEE
T ss_pred eEEEEeCCC---cHHHHHHHHHHHHcCCEEeC-------CcCCCCeEEEec------CCCChHHHHHHHCCCcEe
Confidence 345555654 23456778889999999853 233344544443 234566778887654333
No 16
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=20.82 E-value=29 Score=27.21 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEeeechhhhhhHHHHHHHHhhccCeE
Q 027133 146 CILGFCRSIEMLSDVVEDTVLEHGGEV 172 (227)
Q Consensus 146 ci~GFCrSiemLsdvVEDtVLe~GGEV 172 (227)
.+.||||. =||+-..++..+.|.++
T Consensus 38 nLAGFCRN--CLskWy~~aA~~~G~~~ 62 (104)
T 3fyb_A 38 IQADFCRN--CLAKWLMEAATEQGVEL 62 (104)
T ss_dssp HHHSCCHH--HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHH--HHHHHHHHHHHHcCCcC
Confidence 46799995 69999999999999765
No 17
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.48 E-value=40 Score=26.00 Aligned_cols=27 Identities=41% Similarity=0.543 Sum_probs=18.3
Q ss_pred eccCCCchhH--HHHH----HHhCCceeEEEEE
Q 027133 196 LWGVPPASET--LHLA----VQSGGGIVEKVYW 222 (227)
Q Consensus 196 LwGVPPa~E~--L~~A----irsGGGIVeKvy~ 222 (227)
..|+||+... |.+- -|+|||.|+.+..
T Consensus 13 V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~ 45 (104)
T 2dhx_A 13 VRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR 45 (104)
T ss_dssp EESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE
T ss_pred EECCCCCCChhHheEEEeCCCcCCCceeeEEEE
Confidence 4688887543 3332 3589999999864
No 18
>3boe_A Cadmium-specific carbonic anhydrase; marine diatom, cadmium-bound, acetate LI lyase; 1.40A {Thalassiosira weissflogii} SCOP: c.154.1.1 PDB: 3boc_A 3bob_A 3boj_A 3boh_A
Probab=20.12 E-value=59 Score=28.02 Aligned_cols=79 Identities=27% Similarity=0.367 Sum_probs=41.5
Q ss_pred ecceeeeeeeccCCCCCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcc----eeeEeeEeeeeeccCC-
Q 027133 126 CLGALFDIAATNGLDMGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLH----EKLTMTVAVPFLWGVP- 200 (227)
Q Consensus 126 ClGA~F~IAATNGlD~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlH----EkL~MTVAvPlLwGVP- 200 (227)
-+|.++-||---|. ++++-|.+.-++... -|.|=..+---.+++- =||-||=-.-= -|+|
T Consensus 57 mlGGvYaIA~nRg~------------~t~~~L~~i~~eVaa--~GHvPsVHGD~~~~mlGCGf~KLW~tgkf~d-~g~p~ 121 (210)
T 3boe_A 57 MPGGIYAIAHNRGV------------TSIEGLKQITKEVAS--KGHLPSVHGDHSSDMLGCGFFKLWVTGRFDD-MGYPR 121 (210)
T ss_dssp CTTTTHHHHHHHTC------------CSHHHHHHHHHHHHH--TTSEEEEEEETTTBGGGCHHHHHHHTTTTGG-GTCCC
T ss_pred CCCceEEEEeccCc------------ccHHHHHHHHHHHHh--cCCCCccccCCcCCccccceEEEEecccccc-cCCCC
Confidence 37888888877665 466777666555322 2333222211111110 01111000000 0899
Q ss_pred Cch--hHHHHHHHhCCceeEE
Q 027133 201 PAS--ETLHLAVQSGGGIVEK 219 (227)
Q Consensus 201 Pa~--E~L~~AirsGGGIVeK 219 (227)
|.+ |.=-.||+++||+||-
T Consensus 122 P~f~AdqGa~~V~~~GGvvE~ 142 (210)
T 3boe_A 122 PQFDADQGANAVKDAGGIIEM 142 (210)
T ss_dssp CSSCHHHHHHHHHHTTCEEEE
T ss_pred CCCChhHhHHHHHhcCCEEEe
Confidence 876 4556899999999984
Done!