Query 027133
Match_columns 227
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 08:32:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027133.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027133hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jfga1 c.5.1.1 (A:1-93) UDP-N 77.7 3 0.00022 27.1 5.9 67 142-215 5-90 (93)
2 d1rcua_ c.129.1.1 (A:) Hypothe 65.1 2.1 0.00016 31.7 3.1 33 143-175 2-65 (170)
3 d2h1ia1 c.69.1.14 (A:1-202) Ca 33.2 43 0.0032 22.2 5.4 90 130-220 83-178 (202)
4 d1t0ba_ c.23.16.6 (A:) GK2113 31.0 20 0.0015 27.0 3.7 73 144-217 4-96 (240)
5 d2csua3 c.23.4.1 (A:291-453) A 27.3 27 0.002 24.1 3.6 68 141-211 2-71 (163)
6 d2fcra_ c.23.5.1 (A:) Flavodox 26.9 26 0.0019 25.4 3.6 30 141-174 83-122 (173)
7 d1yoba1 c.23.5.1 (A:1-179) Fla 26.2 27 0.002 25.7 3.5 29 142-174 88-126 (179)
8 d1ysra1 d.122.1.3 (A:299-446) 26.0 39 0.0029 23.3 4.3 31 160-195 116-146 (148)
9 d1cdza_ c.15.1.1 (A:) DNA-repa 25.7 25 0.0018 21.9 2.8 59 142-216 8-67 (96)
10 d1l7ba_ c.15.1.2 (A:) NAD+-dep 24.2 19 0.0014 24.4 2.2 31 141-174 9-39 (92)
11 d2je8a1 b.1.4.1 (A:220-330) Be 23.6 6.5 0.00048 25.8 -0.4 55 167-222 45-107 (111)
12 d1i58a_ d.122.1.3 (A:) Histidi 23.4 49 0.0036 21.4 4.2 32 159-195 157-188 (189)
13 d2j5aa1 d.58.14.1 (A:3-108) Ri 23.2 29 0.0021 23.4 3.0 25 153-177 22-46 (106)
14 d1f4pa_ c.23.5.1 (A:) Flavodox 22.0 32 0.0023 23.6 3.1 29 142-174 84-120 (147)
15 d1loua_ d.58.14.1 (A:) Ribosom 21.9 37 0.0027 22.3 3.3 25 154-178 19-43 (97)
16 d1zzka1 d.51.1.1 (A:11-85) HnR 21.3 60 0.0044 19.8 4.1 41 128-168 34-74 (75)
17 d1vqol1 c.12.1.1 (L:1-150) Rib 21.1 23 0.0016 24.9 2.1 36 140-180 113-148 (150)
No 1
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=77.67 E-value=3 Score=27.14 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=45.4
Q ss_pred CceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhc--------cCcc-----------eeeEeeEeeeeeccCCCc
Q 027133 142 GRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASK--------GGLH-----------EKLTMTVAVPFLWGVPPA 202 (227)
Q Consensus 142 gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k--------~GlH-----------EkL~MTVAvPlLwGVPPa 202 (227)
++|+.|+|+..|=- .+-....++|.+|...+...+ .+.. ..+.+-|.=| ||||.
T Consensus 5 ~K~v~ViGlG~sG~----s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SP---Gi~~~ 77 (93)
T d2jfga1 5 GKNVVIIGLGLTGL----SCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASP---GIALA 77 (93)
T ss_dssp TCCEEEECCSHHHH----HHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECT---TSCTT
T ss_pred CCEEEEEeECHHHH----HHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECC---CCCCC
Confidence 68999999998832 234677888999988665222 1111 1223444455 89999
Q ss_pred hhHHHHHHHhCCc
Q 027133 203 SETLHLAVQSGGG 215 (227)
Q Consensus 203 ~E~L~~AirsGGG 215 (227)
-+.+..|.+-|==
T Consensus 78 ~~~~~~a~~~gi~ 90 (93)
T d2jfga1 78 HPSLSAAADAGIE 90 (93)
T ss_dssp SHHHHHHHHTTCE
T ss_pred CHHHHHHHHcCCC
Confidence 9999999987643
No 2
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=65.09 E-value=2.1 Score=31.65 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=24.3
Q ss_pred ceeEEeeechhhh-----hhHH--------------------------HHHHHHhhccCeEEEe
Q 027133 143 RRLCILGFCRSIE-----MLSD--------------------------VVEDTVLEHGGEVVAA 175 (227)
Q Consensus 143 RRlci~GFCrSie-----mLsd--------------------------vVEDtVLe~GGEVv~a 175 (227)
||+|+||+|+|.. .+.| .|-+.+.++||.|+-.
T Consensus 2 k~v~v~~~~~~~~~~p~~~~~~~a~~lG~~la~~g~~V~~GG~~GlM~ava~ga~~~gg~viGi 65 (170)
T d1rcua_ 2 KKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREAGGTVVGI 65 (170)
T ss_dssp CEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEEEecCCCCCcchHHHHHHHHHHHHHHHCCCEEECCCccCHHHHHHHHHHhcCCccccc
Confidence 7899999996643 2333 4678889999998754
No 3
>d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]}
Probab=33.20 E-value=43 Score=22.23 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=45.4
Q ss_pred eeeeeeccCCCCCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeecc-----CCCc-h
Q 027133 130 LFDIAATNGLDMGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWG-----VPPA-S 203 (227)
Q Consensus 130 ~F~IAATNGlD~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwG-----VPPa-~ 203 (227)
+-.+.+..++|+ .|+.+.|||..--+-......--..-++-+.........-....-.-...+-++.| |||+ .
T Consensus 83 i~~~~~~~~~d~-~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~D~~vp~~~~ 161 (202)
T d2h1ia1 83 LDEAAKEYKFDR-NNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRGMQLANLAGKSVFIAAGTNDPICSSAES 161 (202)
T ss_dssp HHHHHHHTTCCT-TCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSSCCCCCCTTCEEEEEEESSCSSSCHHHH
T ss_pred HHHHHHhccccc-cceeeecccccchHHHHHHHhccccccceeeecCCCCcccccccccccchhhcccccCCCccCHHHH
Confidence 334455667776 57779999987655444332221122333332222111112222222223334556 5654 4
Q ss_pred hHHHHHHHhCCceeEEE
Q 027133 204 ETLHLAVQSGGGIVEKV 220 (227)
Q Consensus 204 E~L~~AirsGGGIVeKv 220 (227)
+.+..+.+.-|.-|+.+
T Consensus 162 ~~~~~~l~~~g~~~~~~ 178 (202)
T d2h1ia1 162 EELKVLLENANANVTMH 178 (202)
T ss_dssp HHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 67888888888765543
No 4
>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=31.02 E-value=20 Score=27.01 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=41.4
Q ss_pred eeEEeeechhh-----------hhhHHHHHHHHhhccCeEEEee-hhhccCcc-eeeEeeEeeeeec---c---CC-Cch
Q 027133 144 RLCILGFCRSI-----------EMLSDVVEDTVLEHGGEVVAAE-KASKGGLH-EKLTMTVAVPFLW---G---VP-PAS 203 (227)
Q Consensus 144 Rlci~GFCrSi-----------emLsdvVEDtVLe~GGEVv~ae-k~~k~GlH-EkL~MTVAvPlLw---G---VP-Pa~ 203 (227)
||-|+|=||.- |-+-..+.+.+.+.|-+|..+. .....++. |.|.=.=+| ++| + ++ .+.
T Consensus 4 rvlv~~~~~He~~~~~v~~i~p~g~~~~ia~~l~~~g~~v~tat~~e~~~~~~~~~L~~~Dvl-i~~~~~~~~~l~~~q~ 82 (240)
T d1t0ba_ 4 RVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVL-VWWGHIAHDEVKDEVV 82 (240)
T ss_dssp EEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEE-EEECSSCGGGSCHHHH
T ss_pred EEEEECCccccccchhhhhhCcccHHHHHHHHhhcCCceEEEEEecCccccCCHHHHhcCCEE-EEeCCCCCCcCCHHHH
Confidence 57788877763 2222455566667788887642 22223332 333222222 233 2 22 347
Q ss_pred hHHHHHHHhCCcee
Q 027133 204 ETLHLAVQSGGGIV 217 (227)
Q Consensus 204 E~L~~AirsGGGIV 217 (227)
+.|...|++|||+|
T Consensus 83 ~al~~~v~~G~G~V 96 (240)
T d1t0ba_ 83 ERVHRRVLEGMGLI 96 (240)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCEE
Confidence 88999999999998
No 5
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=27.30 E-value=27 Score=24.06 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=46.9
Q ss_pred CCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeE--eeEeeeeeccCCCchhHHHHHHH
Q 027133 141 MGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLT--MTVAVPFLWGVPPASETLHLAVQ 211 (227)
Q Consensus 141 ~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~--MTVAvPlLwGVPPa~E~L~~Air 211 (227)
.|+||+|++---..-.| .-|.+.++|-++-.-..+++.-|.|.|- .++.-|+-.+-.-..|....+++
T Consensus 2 ~G~rvaiit~sGG~~~l---~aD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~ 71 (163)
T d2csua3 2 RGNKVAIMTNAGGPGVL---TADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAK 71 (163)
T ss_dssp SSSEEEEEESCHHHHHH---HHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECChHHHHH---HHHHHHHcCCccCCCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHH
Confidence 38999999877665544 5688899999998888888888888774 34555774433333455555544
No 6
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Probab=26.90 E-value=26 Score=25.38 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=21.9
Q ss_pred CCceeEEee----------echhhhhhHHHHHHHHhhccCeEEE
Q 027133 141 MGRRLCILG----------FCRSIEMLSDVVEDTVLEHGGEVVA 174 (227)
Q Consensus 141 ~gRRlci~G----------FCrSiemLsdvVEDtVLe~GGEVv~ 174 (227)
.+++++||| ||..+.+|.+ .+.+.|+.+|-
T Consensus 83 ~gk~~avFGlGD~~~y~~~F~~a~~~l~~----~l~~~GA~~IG 122 (173)
T d2fcra_ 83 KDLPVAIFGLGDAEGYPDNFCDAIEEIHD----CFAKQGAKPVG 122 (173)
T ss_dssp TTCEEEEEEEECTTTCTTSTTTHHHHHHH----HHHHTTCEEEC
T ss_pred CCCeEEEEEecCCCcchhhHHHHHHHHHH----HHHhCCCEEec
Confidence 377899999 6666666655 45678999884
No 7
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}
Probab=26.20 E-value=27 Score=25.67 Aligned_cols=29 Identities=17% Similarity=0.535 Sum_probs=22.5
Q ss_pred CceeEEee----------echhhhhhHHHHHHHHhhccCeEEE
Q 027133 142 GRRLCILG----------FCRSIEMLSDVVEDTVLEHGGEVVA 174 (227)
Q Consensus 142 gRRlci~G----------FCrSiemLsdvVEDtVLe~GGEVv~ 174 (227)
+++++||| ||..+.+|.+. +.++|++++-
T Consensus 88 g~~~avfGlGDs~~~~~~Fc~a~~~l~~~----l~~~GA~~iG 126 (179)
T d1yoba1 88 GKTVALFGLGDQVGYPENYLDALGELYSF----FKDRGAKIVG 126 (179)
T ss_dssp TCEEEEEEECCTTTCTTTTTHHHHHHHHH----HHTTTCEEEC
T ss_pred CcEEEEEEecCCcccchhHHHHHHHHHHH----HHhCCCeEee
Confidence 67888888 88888877665 4578998873
No 8
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.05 E-value=39 Score=23.27 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=22.5
Q ss_pred HHHHHHhhccCeEEEeehhhccCcceeeEeeEeeee
Q 027133 160 VVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPF 195 (227)
Q Consensus 160 vVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPl 195 (227)
+|..-|..|||++-+.... .. -.++++.+|+
T Consensus 116 i~~~iv~~hgG~i~~~s~~-~~----Gt~f~i~lP~ 146 (148)
T d1ysra1 116 LVAQQAQLHGGTASLENSP-LG----GARLVLRLPG 146 (148)
T ss_dssp HHHHHHHHTTCEEEEEECT-TS----SEEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEEcC-CC----eEEEEEEEEc
Confidence 4666788999999875443 22 3588888996
No 9
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.68 E-value=25 Score=21.89 Aligned_cols=59 Identities=12% Similarity=0.245 Sum_probs=33.7
Q ss_pred CceeEEee-echhhhhhHHHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeeeeccCCCchhHHHHHHHhCCce
Q 027133 142 GRRLCILG-FCRSIEMLSDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPFLWGVPPASETLHLAVQSGGGI 216 (227)
Q Consensus 142 gRRlci~G-FCrSiemLsdvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPlLwGVPPa~E~L~~AirsGGGI 216 (227)
|.++||.| |= -+. .+-++..|.++||.|... +.++-|--|+- .+..+..+.+..-.++|
T Consensus 8 g~~f~v~g~~~--~~~-~~~l~~~i~~~GG~v~~~-------~~~~~THvI~~------~~~~~~~~~~~~~~~~i 67 (96)
T d1cdza_ 8 GKHFFLYGEFP--GDE-RRKLIRYVTAFNGELEDY-------MSDRVQFVITA------QEWDPSFEEALMDNPSL 67 (96)
T ss_dssp TCEEEECSCCC--THH-HHHHHHHHHHTTCEECSS-------CSTTCSEEECS------SCCCHHHHHHHTTCTTC
T ss_pred CcEEEEeCCCC--HHH-HHHHHHHHHHhCCEEecc-------CCCCceEEEEc------cCCcceeeehhhhCCCC
Confidence 66788877 42 111 234577999999998532 33444444432 24445566666655554
No 10
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]}
Probab=24.16 E-value=19 Score=24.36 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=25.1
Q ss_pred CCceeEEeeechhhhhhHHHHHHHHhhccCeEEE
Q 027133 141 MGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVA 174 (227)
Q Consensus 141 ~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~ 174 (227)
-|.++|+-|+- + |=.+-+++.+.++||.|.-
T Consensus 9 ~G~~iv~TG~~-~--~~R~e~~~~i~~~Gg~v~~ 39 (92)
T d1l7ba_ 9 KGLTFVITGEL-S--RPREEVKALLRRLGAKVTD 39 (92)
T ss_dssp TTCEEECSTTT-T--SCHHHHHHHHHHTTCEEES
T ss_pred CCCEEEEeCCc-c--CCHHHHHHHHHHhCCEEcC
Confidence 38899999985 3 4467889999999999864
No 11
>d2je8a1 b.1.4.1 (A:220-330) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=23.64 E-value=6.5 Score=25.85 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=35.8
Q ss_pred hccCeEEEeehh--hccCcce-eeEeeEeeeeec---c--CCCchhHHHHHHHhCCceeEEEEE
Q 027133 167 EHGGEVVAAEKA--SKGGLHE-KLTMTVAVPFLW---G--VPPASETLHLAVQSGGGIVEKVYW 222 (227)
Q Consensus 167 e~GGEVv~aek~--~k~GlHE-kL~MTVAvPlLw---G--VPPa~E~L~~AirsGGGIVeKvy~ 222 (227)
..|+++...++. .+.|.++ .+.++|.=|-|| | =|+ +=+++..++.+|..+|....
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~p~LW~P~g~g~P~-LY~~~v~l~~~g~~~D~~~~ 107 (111)
T d2je8a1 45 LNGTTVTEVKQQVTLQPGINHITLPAEVTNPVRWMPNGWGTPT-LYDFSAQIACGDRIVAEQSH 107 (111)
T ss_dssp ETTEEEEEEEEEEEECSEEEEEEEEEEEESCCCBCCTTSSCBC-CEEEEEEEEETTEEEEEEEE
T ss_pred cCCcEEEEEEEEEEecccccEEEEEEEeCCccCcCCCCCCCCc-eEEEEEEEEECCEEEEEEEE
Confidence 345666555542 3344433 356788889999 4 444 55677788889999988754
No 12
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=23.39 E-value=49 Score=21.41 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=23.6
Q ss_pred HHHHHHHhhccCeEEEeehhhccCcceeeEeeEeeee
Q 027133 159 DVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPF 195 (227)
Q Consensus 159 dvVEDtVLe~GGEVv~aek~~k~GlHEkL~MTVAvPl 195 (227)
.+|..-|..|||+|-+.-. ..+=-+.++-+|+
T Consensus 157 ai~k~ive~hgG~I~v~S~-----~g~GT~f~i~lPl 188 (189)
T d1i58a_ 157 DVVKNVVESLNGSISIESE-----KDKGTKVTIRLPL 188 (189)
T ss_dssp HHHHHHHHHTTCEEEEEEE-----TTTEEEEEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEec-----CCCCEEEEEEEeC
Confidence 5677888999999877532 2245788888886
No 13
>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus [TaxId: 63363]}
Probab=23.16 E-value=29 Score=23.43 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHhhccCeEEEeeh
Q 027133 153 SIEMLSDVVEDTVLEHGGEVVAAEK 177 (227)
Q Consensus 153 SiemLsdvVEDtVLe~GGEVv~aek 177 (227)
.++-+-+-|++.+.+.||+|+..+.
T Consensus 22 ~~~~~~~~~~~~i~~~gg~i~~~~~ 46 (106)
T d2j5aa1 22 EMKKKFEQVKEFIKQKGGEILYEED 46 (106)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3667778889999999999998874
No 14
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}
Probab=22.00 E-value=32 Score=23.56 Aligned_cols=29 Identities=28% Similarity=0.772 Sum_probs=20.7
Q ss_pred CceeEEee--------echhhhhhHHHHHHHHhhccCeEEE
Q 027133 142 GRRLCILG--------FCRSIEMLSDVVEDTVLEHGGEVVA 174 (227)
Q Consensus 142 gRRlci~G--------FCrSiemLsdvVEDtVLe~GGEVv~ 174 (227)
+++++||| ||+.+..|.+. ..++|++++.
T Consensus 84 ~~~~avfGlGds~y~~f~~a~~~l~~~----l~~lGa~~v~ 120 (147)
T d1f4pa_ 84 GRKVACFGCGDSSWEYFCGAVDAIEEK----LKNLGAEIVQ 120 (147)
T ss_dssp TCEEEEEEEECTTSSSTTHHHHHHHHH----HHHTTCEECS
T ss_pred CCcEEEEecCCccHHHHhHHHHHHHHH----HHhCCCEEee
Confidence 56888888 58888777554 4567888764
No 15
>d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus [TaxId: 274]}
Probab=21.85 E-value=37 Score=22.35 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHhhccCeEEEeehh
Q 027133 154 IEMLSDVVEDTVLEHGGEVVAAEKA 178 (227)
Q Consensus 154 iemLsdvVEDtVLe~GGEVv~aek~ 178 (227)
++.+-+-+++.+.++||+|+..|..
T Consensus 19 ~~~~~~~~~~~i~~~gg~i~~~e~~ 43 (97)
T d1loua_ 19 LALEKEIIQRAAENYGARVEKVEEL 43 (97)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeee
Confidence 5556677888999999999988753
No 16
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.29 E-value=60 Score=19.83 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=31.4
Q ss_pred ceeeeeeeccCCCCCceeEEeeechhhhhhHHHHHHHHhhc
Q 027133 128 GALFDIAATNGLDMGRRLCILGFCRSIEMLSDVVEDTVLEH 168 (227)
Q Consensus 128 GA~F~IAATNGlD~gRRlci~GFCrSiemLsdvVEDtVLe~ 168 (227)
||-..|...+.-+..|.+.|.|-..+++.-.+.+++-|.|+
T Consensus 34 ga~I~i~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~e~ 74 (75)
T d1zzka1 34 GASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 74 (75)
T ss_dssp CCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEccCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 66666665555556788899999999988888888887764
No 17
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=21.07 E-value=23 Score=24.89 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=27.0
Q ss_pred CCCceeEEeeechhhhhhHHHHHHHHhhccCeEEEeehhhc
Q 027133 140 DMGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKASK 180 (227)
Q Consensus 140 D~gRRlci~GFCrSiemLsdvVEDtVLe~GGEVv~aek~~k 180 (227)
|...-|-| .+...|+.-.+.|+..||+|.+.|.+.+
T Consensus 113 ~l~~~l~I-----ka~~~S~sA~ekIe~aGG~v~l~~~~~~ 148 (150)
T d1vqol1 113 QVRHELTL-----IADDFSEGAREKVEGAGGSVELTDLGEE 148 (150)
T ss_dssp CCCSCCEE-----EESEECHHHHHHHHHTTCEEEECSTTCC
T ss_pred ccCcCEEE-----EEEEcCHHHHHHHHHcCCEEEEeechhc
Confidence 34445555 3456678889999999999999988754
Done!