BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027134
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 266 bits (680), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 120/168 (71%), Positives = 149/168 (88%)
Query: 60 TMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK 119
T S++ SVHDF+VKDAK DVDLSI+KGK+LLIVNVAS+CG+TNSNY E++QLY+KYK
Sbjct: 3 TQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYK 62
Query: 120 NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS 179
+QGLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIFDK+DVNG+NA+PLY+ LK
Sbjct: 63 DQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLG 122
Query: 180 KGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLETA 227
K G+FGD I+WNF+KFLV+K+G VV+RY PTTSPLS+E+DIK+LLE +
Sbjct: 123 KWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEIS 170
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant
Peroxidase From Trypanosoma Brucei
Length = 190
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 120/172 (69%), Gaps = 3/172 (1%)
Query: 56 RSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLY 115
R M++ S S+ DF V DA + +L +KG LLI NVAS+CG T Y + LY
Sbjct: 17 RGGSHMSAAS--SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLY 74
Query: 116 DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKH 175
+KYK+QG +LAFPCNQFG QEPG+ E+I+EF CT+FKAEFPI K++VNG+NA PLY++
Sbjct: 75 NKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEY 134
Query: 176 LKSSKGGLF-GDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 226
+K +K G+ +IKWNF+ FL+D++G VER++P S IEK + LLE+
Sbjct: 135 MKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLES 186
>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1
Length = 166
Score = 180 bits (457), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/161 (53%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
S+++F V A G+ DLS +KG LLI NVAS+CG T Y + LY+KYK QG +LA
Sbjct: 4 SIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVLA 63
Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-D 186
FPCNQF QEPG +++EFACTRFKA+FPI K+DVNG A PLY+ +K++ GLFG
Sbjct: 64 FPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEFMKATIPGLFGTK 123
Query: 187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLETA 227
+IKWNF+ FL+D+ G VER++P S IEK + LL A
Sbjct: 124 AIKWNFTSFLIDRHGVPVERFSPGASVEDIEKKLLPLLGGA 164
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 120/175 (68%), Gaps = 5/175 (2%)
Query: 54 ASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ 113
+SR + AS S+ DF V DA + +L +KG LLI NVAS+CG T Y +
Sbjct: 15 SSRKKMSAAS----SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATT 70
Query: 114 LYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLY 173
LY+KYK+QG +LAFP NQFG QEPG+ E+I+EF CT+FKAEFPI K++VNG+NA PLY
Sbjct: 71 LYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLY 130
Query: 174 KHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLETA 227
+++K +K G+ +IKWNF+ FL+D++G VER++P S IE+ + LL +A
Sbjct: 131 EYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGSA 185
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 116/169 (68%), Gaps = 7/169 (4%)
Query: 54 ASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ 113
ASR D A S+H+FS KD G V+L Y+G + ++ NVASQCG T NYT+L
Sbjct: 16 ASRDDWRCAR----SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVD 71
Query: 114 LYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLY 173
L+ +Y GL ILAFPCNQFG QEPG NE+I+EFA + +F +F K+ VNGD+A PL+
Sbjct: 72 LHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLW 130
Query: 174 KHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220
K +K KG G+ G++IKWNF+KFL+DK G VV+RY P PL IEKD+
Sbjct: 131 KWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 179
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|2RM6|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Reduced Form
Length = 167
Score = 176 bits (447), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Query: 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
+S+ DF V DA + +L +KG LLI NVAS+CG T Y + LY+KYK+QG +L
Sbjct: 4 SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVL 63
Query: 127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG- 185
AFP NQFG QEPG+ E+I+EF CT+FKAEFPI K++VNG+NA PLY+++K +K G+
Sbjct: 64 AFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILAT 123
Query: 186 DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLETA 227
+IKWNF+ FL+D++G VER++P S IE+ + LL +A
Sbjct: 124 KAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGSA 165
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 114/164 (69%)
Query: 62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ 121
+ +S S+++F+VKD G DV L Y+G + LIVNVA + G T+ NY +L +++ + +
Sbjct: 4 SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVGK 63
Query: 122 GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG 181
GL ILAFPCNQFG QEP +I++F ++ +F +F K+ VNG +A LYK LKS +
Sbjct: 64 GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQH 123
Query: 182 GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225
G ++IKWNFSKFLVD++G V+RY+PTT+P IE DI +LLE
Sbjct: 124 GTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE 167
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 114/164 (69%)
Query: 62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ 121
+ +S S+++F+VKD G DV L Y+G + LIVNVA + G T+ NY +L +++ + +
Sbjct: 4 SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVGK 63
Query: 122 GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG 181
GL ILAFPCNQFG QEP +I++F ++ +F +F K+ VNG +A LYK LKS +
Sbjct: 64 GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQH 123
Query: 182 GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225
G ++IKWNFSKFLVD++G V+RY+PTT+P IE DI +LLE
Sbjct: 124 GTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE 167
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 170 bits (430), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 110/155 (70%), Gaps = 3/155 (1%)
Query: 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
S+H+FS KD G V+L Y+G + ++ NVASQ G T NYT+L L+ +Y GL ILA
Sbjct: 28 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILA 87
Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFG 185
FPCNQFG QEPG NE+I+EFA + +F +F K+ VNGD+A PL+K +K KG G+ G
Sbjct: 88 FPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 146
Query: 186 DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220
++IKWNF+KFL+DK G VV+RY P PL IEKD+
Sbjct: 147 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 181
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 101/151 (66%), Gaps = 2/151 (1%)
Query: 76 DAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGA 135
D KGQ KGK++LIVNVAS+CG T Y EL LY +YK++G I+ FPCNQFG
Sbjct: 19 DKKGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKRYKDEGFTIIGFPCNQFGH 77
Query: 136 QEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSK 194
QEPG +E+I +F + FPI K+DVNG N P+YK LKS K G+ G IKWNF K
Sbjct: 78 QEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEK 137
Query: 195 FLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225
FLVDK+G V ERY+ T P S+ + I++LL+
Sbjct: 138 FLVDKKGKVYERYSSLTKPSSLSETIEELLK 168
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 4/157 (2%)
Query: 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
S + F VKDAKG+ V L YKGK+ L+VNVAS C LT+ NY L +L+ ++ +LA
Sbjct: 17 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 76
Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
FPCNQFG EP +++++ FA + FPIF K+ + G P ++ L S
Sbjct: 77 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 132
Query: 188 IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 224
+WNF K+LV+ EG VV+ + P I DI L+
Sbjct: 133 PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 169
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 4/157 (2%)
Query: 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
S + F VKDAKG+ V L YKGK+ L+VNVAS C LT+ NY L +L+ ++ +LA
Sbjct: 26 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 85
Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
FPCNQFG EP +++++ FA + FPIF K+ + G P ++ L S
Sbjct: 86 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 141
Query: 188 IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 224
+WNF K+LV+ EG VV+ + P I DI L+
Sbjct: 142 PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 178
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGL 123
Q + +DF + +G+ V L Y+G + L+VNVAS+CG T+ +Y L QL
Sbjct: 24 QQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHF 83
Query: 124 EILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGL 183
+LAFPCNQFG QEP N++I+ FA + FP+F K+ V G A P +K+L +
Sbjct: 84 NVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS--- 140
Query: 184 FGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 224
G WNF K+LV +G VV + PT S + I L+
Sbjct: 141 -GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 96/186 (51%), Gaps = 25/186 (13%)
Query: 64 QSKTSVHDFSVKD-AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG 122
QS SV+ FS + A G+ V L +GK+LLI NVAS G T +YT++++L + +G
Sbjct: 21 QSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG 80
Query: 123 LEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLK 177
L +L FPCNQFG QE NE+I R F+ F +F+K +VNG A PL+ L+
Sbjct: 81 LVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 140
Query: 178 SSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEK 218
+ D+ + WNF KFLV +G + RY+ + IE
Sbjct: 141 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEP 200
Query: 219 DIKKLL 224
DI+ LL
Sbjct: 201 DIEALL 206
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 25/183 (13%)
Query: 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
S +D S + G+ VD + ++G+ +LI NVAS CG T ++T+L++L ++ + L +L
Sbjct: 27 SFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCRFPRR-LVVLG 85
Query: 128 FPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG 182
FPCNQFG QE NE+I R ++ F + K +VNG N P++ +LK
Sbjct: 86 FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPY 145
Query: 183 LFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223
+ D + WNF KFL+ EG RY+ T ++IE DIK+L
Sbjct: 146 PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 205
Query: 224 LET 226
L+
Sbjct: 206 LKV 208
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 95/184 (51%), Gaps = 29/184 (15%)
Query: 68 SVHDFSVKD-AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
+V+ FS + A G+ +LS +GK+LLI NVAS G T +YT+++ L + +GL +L
Sbjct: 11 TVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLVVL 70
Query: 127 AFPCNQFGAQEPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKS- 178
FPCNQFG QE NE+I C + F+ F +F+K +VNG+ A PL+ L+
Sbjct: 71 GFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREV 128
Query: 179 ------SKGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220
L D + WNF KFLV +G V RY+ + IE DI
Sbjct: 129 LPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDI 188
Query: 221 KKLL 224
+ LL
Sbjct: 189 ETLL 192
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
Length = 215
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 22/181 (12%)
Query: 66 KTSVHDF-SVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLE 124
K +++D+ ++ K + V Y GK +L VNVA+ CGLT + Y EL+ L ++ K GL
Sbjct: 32 KGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLV 90
Query: 125 ILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS 179
+L FPCNQFG QEPGDN++I R F F +F+K DVNG+ ++ LK S
Sbjct: 91 VLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHS 150
Query: 180 ---KGGLFG------------DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 224
+ G I+WNF KFLV +G V R++ + S++ DI L
Sbjct: 151 CPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYL 210
Query: 225 E 225
+
Sbjct: 211 K 211
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 22/174 (12%)
Query: 68 SVHDFSVKDAKGQD-VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
+++++ G++ + Y GK +L VNVAS GLT Y EL+ L ++ GL IL
Sbjct: 16 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVIL 74
Query: 127 AFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS-- 179
FPCNQFG QEPG+N +I R F F +F+K DVNG+ Y LK+S
Sbjct: 75 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 134
Query: 180 -KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220
L G S I+WNF KFLV +G + R+ T+ +++ DI
Sbjct: 135 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 188
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 66 KTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEI 125
+ S+ D +KD KG L+ KGK++LI ++ ++ L +LY+KY +QG EI
Sbjct: 12 EASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEI 71
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
S FS D G+ V L+ KGK + I A+ CG L +L +KY + + ++
Sbjct: 9 SAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVS 68
Query: 128 FPCNQ 132
C++
Sbjct: 69 LSCDK 73
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + ++ Y +K+QG+EI+A
Sbjct: 5 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVA 61
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVA 64
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 60 TMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK 119
TMAS + + D + +DA G+ LS ++GK LL+ A+ C L +L K
Sbjct: 32 TMAS-APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS 90
Query: 120 NQGLEILAFPCNQFGAQEP 138
E++A + ++P
Sbjct: 91 GPNFEVVAINIDTRDPEKP 109
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + C + + Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVA 64
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
+F ++D G+ ++LS KGK + + + + ++ Y +K+QG+EI+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEIVA 64
>pdb|2J4X|A Chain A, Streptococcus Dysgalactiae-Derived Mitogen (Sdm)
Length = 213
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN------GDNAAPLYKHLKSSKGGL 183
N FG Q P ++ ++ T F+ +F F ++DV DN LY+H K G
Sbjct: 111 MNIFGEQIPL--KEQSKYKIT-FQNKFVTFQEIDVRLRKSLMSDNRIKLYEHNSICKKGY 167
Query: 184 FGDSIKWNFSKF 195
+G K N +KF
Sbjct: 168 WGIHYKDNTTKF 179
>pdb|3U5R|E Chain E, Crystal Structure Of A Hypothetical Protein Smc02350 From
Sinorhizobium Meliloti 1021
pdb|3U5R|F Chain F, Crystal Structure Of A Hypothetical Protein Smc02350 From
Sinorhizobium Meliloti 1021
pdb|3U5R|G Chain G, Crystal Structure Of A Hypothetical Protein Smc02350 From
Sinorhizobium Meliloti 1021
pdb|3U5R|H Chain H, Crystal Structure Of A Hypothetical Protein Smc02350 From
Sinorhizobium Meliloti 1021
Length = 218
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 37/173 (21%)
Query: 33 QTLLRPSKSNPISLVSRPCFFASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYK-GKL 91
Q+++ ++SN I+L +R DF + DA G L+ +K
Sbjct: 21 QSMMPKTQSNSITLGTR-------------------AADFVLPDAGGNLFTLAEFKDSPA 61
Query: 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR 151
LL+ ++++C L++ Y QGL ++A N D + E R
Sbjct: 62 LLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSN--------DAQAFPEETLER 113
Query: 152 FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV 204
AE + P K S +G + +F FL D+E +V
Sbjct: 114 VGAEVKAYGY-------GFPYLKDASQSVAKAYGAACTPDF--FLYDRERRLV 157
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 76 DAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132
D KG V L+ +KGK +L+ + C L + Y+ +K++G I ++
Sbjct: 16 DLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR 72
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGL 103
DF++ G+ V LS +GK++++ AS CG+
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGV 47
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 17 IATSLILTRHFTSNCKQTLLRPSKSNPISLVSRPCFFASRSDHTMASQSKTSVHDFSVKD 76
I S+ L++H K + S + SL+S PCF + S +++ D
Sbjct: 383 ITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRIS 442
Query: 77 AKGQDVD 83
A +DVD
Sbjct: 443 AGIEDVD 449
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 29 SNCKQTLLRPSKSNPISLVSRPC 51
+NC QTLL+ KS+ +++VS C
Sbjct: 264 NNCLQTLLQHLKSHSLTIVSNAC 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,310,169
Number of Sequences: 62578
Number of extensions: 247589
Number of successful extensions: 600
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 47
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)