Query 027134
Match_columns 227
No_of_seqs 179 out of 1741
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02399 phospholipid hydroper 100.0 2.4E-34 5.2E-39 229.7 17.6 164 62-225 72-235 (236)
2 PLN02412 probable glutathione 100.0 7.7E-34 1.7E-38 217.7 18.7 164 64-227 4-167 (167)
3 PTZ00056 glutathione peroxidas 100.0 6.7E-33 1.5E-37 217.8 17.9 162 64-226 14-180 (199)
4 cd00340 GSH_Peroxidase Glutath 100.0 1.7E-31 3.8E-36 201.8 16.2 150 69-219 2-151 (152)
5 PRK10606 btuE putative glutath 100.0 8.6E-31 1.9E-35 202.2 17.4 158 67-225 3-182 (183)
6 PTZ00256 glutathione peroxidas 100.0 1.2E-30 2.7E-35 202.9 18.3 162 64-225 15-182 (183)
7 TIGR02540 gpx7 putative glutat 100.0 3.4E-30 7.4E-35 195.0 16.5 148 69-224 2-153 (153)
8 COG0386 BtuE Glutathione perox 100.0 2.8E-28 6.1E-33 177.2 15.7 159 67-226 3-162 (162)
9 PRK15412 thiol:disulfide inter 100.0 1.3E-27 2.8E-32 186.2 13.2 136 64-226 40-178 (185)
10 PF08534 Redoxin: Redoxin; In 100.0 8.2E-28 1.8E-32 180.4 11.5 124 64-212 1-136 (146)
11 PRK09437 bcp thioredoxin-depen 99.9 5.3E-26 1.2E-30 172.1 14.9 145 64-222 5-151 (154)
12 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 2.5E-26 5.5E-31 167.4 12.1 123 65-206 1-124 (124)
13 KOG1651 Glutathione peroxidase 99.9 1.1E-25 2.5E-30 165.6 14.4 163 64-226 9-171 (171)
14 PRK03147 thiol-disulfide oxido 99.9 1.4E-25 2.9E-30 172.9 15.0 136 64-223 36-171 (173)
15 TIGR00385 dsbE periplasmic pro 99.9 7.8E-26 1.7E-30 174.4 13.3 135 64-225 35-172 (173)
16 cd03017 PRX_BCP Peroxiredoxin 99.9 7.9E-26 1.7E-30 168.3 12.4 138 67-220 1-139 (140)
17 COG1225 Bcp Peroxiredoxin [Pos 99.9 3.6E-25 7.8E-30 164.7 14.8 134 63-211 4-140 (157)
18 cd02969 PRX_like1 Peroxiredoxi 99.9 2.2E-25 4.8E-30 171.6 14.2 144 66-226 1-154 (171)
19 PRK00522 tpx lipid hydroperoxi 99.9 4.3E-25 9.2E-30 169.3 15.4 142 64-222 19-164 (167)
20 cd03010 TlpA_like_DsbE TlpA-li 99.9 1.8E-25 3.8E-30 163.9 10.8 123 68-216 2-126 (127)
21 cd03014 PRX_Atyp2cys Peroxired 99.9 9.3E-25 2E-29 163.3 13.9 127 65-211 2-130 (143)
22 cd03018 PRX_AhpE_like Peroxire 99.9 1.1E-24 2.3E-29 163.9 13.1 130 64-211 2-134 (149)
23 cd03015 PRX_Typ2cys Peroxiredo 99.9 1.5E-24 3.2E-29 167.4 14.1 141 65-223 1-156 (173)
24 cd03008 TryX_like_RdCVF Trypar 99.9 6.2E-25 1.3E-29 163.3 11.0 108 80-208 16-130 (146)
25 cd03012 TlpA_like_DipZ_like Tl 99.9 7.2E-25 1.6E-29 160.5 10.8 113 79-210 13-125 (126)
26 TIGR03137 AhpC peroxiredoxin. 99.9 2.2E-24 4.7E-29 168.3 12.7 129 64-210 3-138 (187)
27 TIGR02661 MauD methylamine deh 99.9 8.8E-24 1.9E-28 165.1 15.0 131 63-223 46-178 (189)
28 cd02967 mauD Methylamine utili 99.9 9E-24 2E-28 151.8 12.3 110 70-207 1-112 (114)
29 PRK14018 trifunctional thiored 99.9 1.1E-23 2.4E-28 184.6 14.8 137 64-221 33-170 (521)
30 PRK13190 putative peroxiredoxi 99.9 1.9E-23 4.1E-28 164.7 14.3 142 64-224 3-154 (202)
31 cd02968 SCO SCO (an acronym fo 99.9 7.3E-24 1.6E-28 158.0 10.4 137 68-209 1-142 (142)
32 PLN02919 haloacid dehalogenase 99.9 1.6E-23 3.5E-28 198.9 14.0 144 63-225 391-537 (1057)
33 TIGR01626 ytfJ_HI0045 conserve 99.9 1.9E-23 4.1E-28 160.6 10.2 136 64-224 24-179 (184)
34 cd02971 PRX_family Peroxiredox 99.9 8E-23 1.7E-27 152.0 12.7 129 68-212 1-131 (140)
35 PRK13599 putative peroxiredoxi 99.9 1.1E-22 2.4E-27 161.4 13.7 143 64-223 3-155 (215)
36 cd03016 PRX_1cys Peroxiredoxin 99.9 1.8E-22 3.9E-27 159.4 13.7 142 65-223 1-153 (203)
37 PRK10382 alkyl hydroperoxide r 99.9 1.8E-22 3.9E-27 156.8 13.2 141 64-222 3-154 (187)
38 PRK15000 peroxidase; Provision 99.9 3.1E-22 6.7E-27 157.4 13.9 141 64-222 3-160 (200)
39 cd02970 PRX_like2 Peroxiredoxi 99.9 1.4E-22 3E-27 152.1 11.1 129 68-209 1-148 (149)
40 PRK13728 conjugal transfer pro 99.9 2E-22 4.4E-27 154.0 11.6 121 64-226 50-173 (181)
41 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 2.6E-22 5.6E-27 146.1 11.6 121 70-219 1-121 (123)
42 PRK13191 putative peroxiredoxi 99.9 4.8E-22 1E-26 157.8 12.8 143 64-223 8-160 (215)
43 cd02964 TryX_like_family Trypa 99.9 1.2E-22 2.6E-27 149.9 8.2 107 80-208 8-117 (132)
44 PTZ00137 2-Cys peroxiredoxin; 99.9 1.1E-21 2.5E-26 158.7 14.2 142 63-223 68-224 (261)
45 PRK13189 peroxiredoxin; Provis 99.9 2.5E-21 5.3E-26 154.6 14.8 143 64-224 10-163 (222)
46 cd02966 TlpA_like_family TlpA- 99.9 2.2E-21 4.7E-26 138.3 12.0 116 71-209 1-116 (116)
47 cd03009 TryX_like_TryX_NRX Try 99.9 4.3E-22 9.2E-27 146.7 7.6 113 74-208 3-117 (131)
48 PTZ00253 tryparedoxin peroxida 99.9 3.7E-21 8E-26 151.5 12.6 141 64-222 7-159 (199)
49 PF02630 SCO1-SenC: SCO1/SenC; 99.8 5.9E-21 1.3E-25 147.1 10.3 140 65-209 28-173 (174)
50 PF13905 Thioredoxin_8: Thiore 99.8 4.3E-21 9.4E-26 133.4 7.5 94 89-203 1-95 (95)
51 COG1999 Uncharacterized protei 99.8 2.2E-19 4.8E-24 141.6 13.7 151 71-226 49-206 (207)
52 cd03013 PRX5_like Peroxiredoxi 99.8 1.5E-19 3.3E-24 136.8 10.7 133 65-212 1-142 (155)
53 TIGR02738 TrbB type-F conjugat 99.8 1.4E-19 3.1E-24 136.0 9.8 109 79-224 44-153 (153)
54 COG0450 AhpC Peroxiredoxin [Po 99.8 1.7E-17 3.7E-22 126.3 13.2 142 64-223 4-160 (194)
55 PF00255 GSHPx: Glutathione pe 99.7 2.1E-17 4.7E-22 116.2 11.5 106 70-176 2-107 (108)
56 cd02950 TxlA TRX-like protein 99.7 4.7E-18 1E-22 126.7 8.2 108 74-226 3-112 (142)
57 KOG2792 Putative cytochrome C 99.7 2.9E-17 6.2E-22 129.2 10.9 150 70-224 120-275 (280)
58 KOG2501 Thioredoxin, nucleored 99.7 1E-16 2.2E-21 118.4 7.7 115 72-207 15-132 (157)
59 cd02985 TRX_CDSP32 TRX family, 99.7 4.3E-16 9.2E-21 110.0 10.3 89 86-221 12-100 (103)
60 KOG0910 Thioredoxin-like prote 99.6 1E-15 2.2E-20 112.2 9.3 91 88-226 60-150 (150)
61 KOG0855 Alkyl hydroperoxide re 99.6 6.9E-15 1.5E-19 108.5 11.0 145 62-224 62-209 (211)
62 cd02963 TRX_DnaJ TRX domain, D 99.6 6.1E-15 1.3E-19 105.4 10.0 91 86-223 21-111 (111)
63 cd02951 SoxW SoxW family; SoxW 99.6 8.4E-15 1.8E-19 106.9 10.8 105 88-226 12-121 (125)
64 cd02999 PDI_a_ERp44_like PDIa 99.6 7.2E-15 1.6E-19 103.1 8.5 86 85-219 14-99 (100)
65 cd02948 TRX_NDPK TRX domain, T 99.6 1.4E-14 2.9E-19 102.1 9.6 87 88-223 16-102 (102)
66 TIGR02740 TraF-like TraF-like 99.6 5E-15 1.1E-19 121.5 8.3 110 78-225 155-265 (271)
67 cd02956 ybbN ybbN protein fami 99.6 2.3E-14 4.9E-19 99.6 9.3 85 88-220 11-95 (96)
68 cd02953 DsbDgamma DsbD gamma f 99.6 2.7E-14 5.8E-19 100.8 9.0 90 88-220 10-103 (104)
69 PRK09381 trxA thioredoxin; Pro 99.5 6.2E-14 1.3E-18 99.8 10.0 90 88-225 20-109 (109)
70 cd02954 DIM1 Dim1 family; Dim1 99.5 3E-14 6.5E-19 101.3 7.9 78 88-213 13-90 (114)
71 PHA02278 thioredoxin-like prot 99.5 8.6E-14 1.9E-18 97.9 8.9 87 88-218 13-99 (103)
72 PRK10996 thioredoxin 2; Provis 99.5 2.8E-13 6E-18 100.7 10.3 89 88-224 51-139 (139)
73 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 1.7E-13 3.6E-18 96.2 7.9 93 78-218 7-99 (101)
74 PF13098 Thioredoxin_2: Thiore 99.5 8.2E-14 1.8E-18 99.5 5.8 106 88-220 4-112 (112)
75 COG3118 Thioredoxin domain-con 99.5 2.5E-13 5.5E-18 109.9 9.1 90 88-225 42-131 (304)
76 cd02994 PDI_a_TMX PDIa family, 99.5 4.3E-13 9.4E-18 94.0 8.8 85 88-221 16-100 (101)
77 PLN00410 U5 snRNP protein, DIM 99.5 7.4E-13 1.6E-17 97.7 10.0 91 88-225 22-121 (142)
78 TIGR01295 PedC_BrcD bacterioci 99.4 1.9E-12 4.1E-17 94.0 11.6 97 88-219 22-119 (122)
79 cd03006 PDI_a_EFP1_N PDIa fami 99.4 5.8E-13 1.2E-17 95.2 8.7 84 88-218 28-111 (113)
80 KOG0907 Thioredoxin [Posttrans 99.4 7.4E-13 1.6E-17 93.3 8.8 85 88-222 20-104 (106)
81 cd03000 PDI_a_TMX3 PDIa family 99.4 1.3E-12 2.9E-17 92.1 9.3 87 88-222 14-102 (104)
82 cd02949 TRX_NTR TRX domain, no 99.4 1.4E-12 3E-17 90.9 9.2 85 88-220 12-96 (97)
83 cd03005 PDI_a_ERp46 PDIa famil 99.4 5.7E-13 1.2E-17 93.4 7.1 82 91-219 18-101 (102)
84 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 1.7E-12 3.8E-17 91.4 9.6 85 88-219 18-103 (104)
85 cd02993 PDI_a_APS_reductase PD 99.4 2.9E-12 6.2E-17 91.2 8.9 87 88-218 20-107 (109)
86 TIGR01126 pdi_dom protein disu 99.4 2.2E-12 4.8E-17 90.2 8.1 89 88-223 12-101 (102)
87 TIGR01068 thioredoxin thioredo 99.4 5.6E-12 1.2E-16 87.8 9.7 88 89-224 14-101 (101)
88 cd02959 ERp19 Endoplasmic reti 99.4 1.2E-12 2.6E-17 94.3 5.8 46 85-131 15-60 (117)
89 cd03002 PDI_a_MPD1_like PDI fa 99.4 5E-12 1.1E-16 89.7 8.7 88 88-220 17-108 (109)
90 PF00085 Thioredoxin: Thioredo 99.3 1.7E-11 3.8E-16 85.7 10.2 87 88-222 16-102 (103)
91 cd03065 PDI_b_Calsequestrin_N 99.3 1.3E-11 2.9E-16 88.9 9.7 89 89-225 27-120 (120)
92 PTZ00443 Thioredoxin domain-co 99.3 1.2E-11 2.6E-16 98.5 10.1 90 88-225 51-140 (224)
93 cd02997 PDI_a_PDIR PDIa family 99.3 6.6E-12 1.4E-16 88.2 7.0 87 88-219 16-103 (104)
94 cd02962 TMX2 TMX2 family; comp 99.3 1.5E-11 3.2E-16 92.4 9.0 81 88-209 46-126 (152)
95 cd02996 PDI_a_ERp44 PDIa famil 99.3 2E-11 4.4E-16 86.6 8.9 85 88-219 17-107 (108)
96 KOG0852 Alkyl hydroperoxide re 99.3 9.1E-11 2E-15 87.6 11.8 128 64-209 5-142 (196)
97 cd02984 TRX_PICOT TRX domain, 99.3 3E-11 6.5E-16 83.8 8.9 83 89-220 14-96 (97)
98 PTZ00051 thioredoxin; Provisio 99.3 3.3E-11 7.1E-16 83.8 8.9 80 88-217 17-96 (98)
99 cd02986 DLP Dim1 family, Dim1- 99.3 3.3E-11 7.2E-16 85.2 8.9 44 88-132 13-56 (114)
100 cd02965 HyaE HyaE family; HyaE 99.3 4.5E-11 9.7E-16 84.5 8.8 82 88-217 26-109 (111)
101 PRK00293 dipZ thiol:disulfide 99.2 3.4E-11 7.4E-16 108.6 10.1 97 84-224 469-570 (571)
102 cd02998 PDI_a_ERp38 PDIa famil 99.2 3.5E-11 7.6E-16 84.5 7.8 87 88-219 17-104 (105)
103 COG2077 Tpx Peroxiredoxin [Pos 99.2 1.5E-10 3.3E-15 84.5 10.9 128 63-208 18-148 (158)
104 cd03001 PDI_a_P5 PDIa family, 99.2 1.5E-10 3.3E-15 81.1 9.8 84 89-219 18-101 (103)
105 cd02975 PfPDO_like_N Pyrococcu 99.2 1.4E-10 3E-15 83.1 9.6 89 88-226 21-112 (113)
106 cd02961 PDI_a_family Protein D 99.2 1E-10 2.2E-15 81.0 8.2 85 88-218 14-99 (101)
107 cd02957 Phd_like Phosducin (Ph 99.2 5.8E-11 1.3E-15 85.0 6.5 73 89-211 24-96 (113)
108 cd02955 SSP411 TRX domain, SSP 99.2 4.8E-10 1E-14 81.3 10.8 85 87-210 13-100 (124)
109 cd02989 Phd_like_TxnDC9 Phosdu 99.2 2.5E-10 5.5E-15 81.7 9.2 75 88-211 21-95 (113)
110 TIGR00411 redox_disulf_1 small 99.2 4.6E-10 9.9E-15 75.3 9.7 81 92-224 2-82 (82)
111 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 2.2E-10 4.7E-15 80.3 7.4 44 88-131 17-61 (104)
112 cd02987 Phd_like_Phd Phosducin 99.1 3.8E-10 8.2E-15 86.9 8.3 73 89-211 83-155 (175)
113 PTZ00102 disulphide isomerase; 99.1 2.3E-10 5E-15 101.5 8.0 107 73-225 358-466 (477)
114 KOG0854 Alkyl hydroperoxide re 99.1 4.5E-09 9.7E-14 78.7 12.4 148 64-224 7-168 (224)
115 KOG0908 Thioredoxin-like prote 99.1 6.7E-10 1.4E-14 87.6 8.4 92 84-225 16-107 (288)
116 cd02947 TRX_family TRX family; 99.1 1.7E-09 3.8E-14 73.3 9.5 83 89-220 10-92 (93)
117 cd02952 TRP14_like Human TRX-r 99.1 2.4E-10 5.3E-15 82.1 5.3 44 88-132 20-70 (119)
118 cd02988 Phd_like_VIAF Phosduci 99.1 8.2E-10 1.8E-14 86.2 8.8 71 89-211 102-172 (192)
119 TIGR00424 APS_reduc 5'-adenyly 99.0 1.7E-09 3.6E-14 94.6 10.8 92 88-223 370-462 (463)
120 PLN02309 5'-adenylylsulfate re 99.0 3.3E-09 7.2E-14 92.7 10.7 92 88-223 364-456 (457)
121 cd02992 PDI_a_QSOX PDIa family 98.9 5.6E-09 1.2E-13 74.8 8.6 43 89-131 19-63 (114)
122 cd02958 UAS UAS family; UAS is 98.9 2.1E-08 4.4E-13 71.9 10.9 94 87-225 15-112 (114)
123 TIGR01130 ER_PDI_fam protein d 98.9 3E-09 6.5E-14 93.7 7.9 91 88-225 17-110 (462)
124 cd02982 PDI_b'_family Protein 98.9 8E-09 1.7E-13 72.3 8.2 90 88-224 11-103 (103)
125 PTZ00062 glutaredoxin; Provisi 98.9 1.4E-08 3.1E-13 79.7 9.1 76 90-223 18-93 (204)
126 TIGR00412 redox_disulf_2 small 98.9 1.7E-08 3.7E-13 66.9 8.1 36 93-129 2-37 (76)
127 PTZ00102 disulphide isomerase; 98.8 1.1E-08 2.4E-13 90.7 8.6 90 88-225 48-139 (477)
128 PF00837 T4_deiodinase: Iodoth 98.8 3.3E-08 7.2E-13 78.3 9.1 140 63-222 73-235 (237)
129 TIGR02187 GlrX_arch Glutaredox 98.8 5.4E-08 1.2E-12 77.6 9.2 92 87-225 17-112 (215)
130 TIGR02739 TraF type-F conjugat 98.7 5.1E-08 1.1E-12 79.0 8.7 104 84-225 145-249 (256)
131 TIGR01130 ER_PDI_fam protein d 98.7 5.8E-08 1.3E-12 85.6 9.8 89 88-224 363-454 (462)
132 PF13728 TraF: F plasmid trans 98.7 4.4E-08 9.5E-13 77.9 8.0 99 84-220 115-214 (215)
133 PRK13703 conjugal pilus assemb 98.7 1E-07 2.2E-12 76.9 8.3 104 84-225 138-242 (248)
134 cd02960 AGR Anterior Gradient 98.7 1.1E-07 2.3E-12 69.2 7.7 76 88-211 22-100 (130)
135 TIGR02187 GlrX_arch Glutaredox 98.6 2.9E-07 6.4E-12 73.3 9.2 42 88-131 132-173 (215)
136 PHA02125 thioredoxin-like prot 98.6 4.2E-07 9E-12 60.1 7.8 22 93-114 2-23 (75)
137 PF14595 Thioredoxin_9: Thiore 98.5 8.3E-08 1.8E-12 70.2 3.2 81 85-210 37-117 (129)
138 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 1.2E-06 2.6E-11 59.8 8.5 45 85-131 8-52 (89)
139 cd02973 TRX_GRX_like Thioredox 98.5 1.2E-06 2.7E-11 56.2 7.6 37 93-131 3-39 (67)
140 KOG0190 Protein disulfide isom 98.4 9.1E-07 2E-11 77.4 7.2 90 87-223 40-131 (493)
141 PF13899 Thioredoxin_7: Thiore 98.4 2.1E-06 4.5E-11 57.6 7.5 43 88-131 16-61 (82)
142 smart00594 UAS UAS domain. 98.3 4.4E-06 9.5E-11 60.5 9.0 89 87-220 25-121 (122)
143 COG0526 TrxA Thiol-disulfide i 98.3 1.1E-06 2.4E-11 61.6 5.5 49 82-131 25-73 (127)
144 COG4232 Thiol:disulfide interc 98.2 3.5E-06 7.5E-11 74.7 6.9 97 85-223 470-567 (569)
145 cd01659 TRX_superfamily Thiore 98.2 8.7E-06 1.9E-10 50.4 7.1 38 93-132 1-38 (69)
146 PF09695 YtfJ_HI0045: Bacteria 98.2 0.00016 3.4E-09 53.9 13.7 142 64-222 2-156 (160)
147 KOG0190 Protein disulfide isom 98.1 9.3E-06 2E-10 71.2 7.3 43 88-130 383-426 (493)
148 TIGR02196 GlrX_YruB Glutaredox 98.1 3.6E-05 7.8E-10 49.8 8.4 33 93-132 2-34 (74)
149 COG0678 AHP1 Peroxiredoxin [Po 98.0 7.5E-05 1.6E-09 54.9 9.2 132 64-208 4-146 (165)
150 KOG0191 Thioredoxin/protein di 98.0 5.5E-05 1.2E-09 65.5 9.4 43 88-131 46-88 (383)
151 PRK11509 hydrogenase-1 operon 97.9 0.00011 2.4E-09 53.6 9.2 89 91-226 36-126 (132)
152 cd02991 UAS_ETEA UAS family, E 97.8 8.8E-05 1.9E-09 53.2 7.2 92 87-226 15-115 (116)
153 COG2143 Thioredoxin-related pr 97.8 0.00033 7.1E-09 52.0 9.9 102 87-220 40-145 (182)
154 KOG0541 Alkyl hydroperoxide re 97.8 0.00027 5.8E-09 52.3 9.1 133 64-210 10-154 (171)
155 PF05176 ATP-synt_10: ATP10 pr 97.7 0.00048 1E-08 56.0 10.6 137 64-220 96-246 (252)
156 TIGR02200 GlrX_actino Glutared 97.7 0.00025 5.4E-09 46.4 6.8 32 93-131 2-33 (77)
157 cd03007 PDI_a_ERp29_N PDIa fam 97.7 0.00031 6.7E-09 50.2 7.6 43 88-132 17-61 (116)
158 KOG0912 Thiol-disulfide isomer 97.6 0.0002 4.3E-09 58.7 7.2 90 89-225 13-107 (375)
159 PF04592 SelP_N: Selenoprotein 97.5 0.0011 2.4E-08 52.6 10.0 117 67-208 8-127 (238)
160 PRK11657 dsbG disulfide isomer 97.5 0.00046 9.9E-09 56.3 7.3 30 88-117 116-145 (251)
161 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00032 7E-09 46.7 5.4 36 93-131 1-36 (84)
162 PRK10877 protein disulfide iso 97.5 0.0016 3.6E-08 52.4 10.3 39 88-130 106-144 (232)
163 PF06110 DUF953: Eukaryotic pr 97.4 0.00024 5.2E-09 51.0 4.4 43 88-131 18-67 (119)
164 KOG4277 Uncharacterized conser 97.3 0.00042 9.1E-09 56.8 5.2 36 90-125 44-79 (468)
165 PF03190 Thioredox_DsbH: Prote 97.3 0.004 8.8E-08 47.1 10.1 85 84-207 32-119 (163)
166 PF13192 Thioredoxin_3: Thiore 97.2 0.0015 3.3E-08 43.0 6.3 23 97-119 6-28 (76)
167 PF05988 DUF899: Bacterial pro 97.2 0.0043 9.3E-08 48.6 9.1 85 68-162 45-137 (211)
168 KOG1731 FAD-dependent sulfhydr 97.2 0.00041 8.9E-09 61.4 3.8 60 90-159 58-120 (606)
169 cd03020 DsbA_DsbC_DsbG DsbA fa 97.1 0.0054 1.2E-07 48.1 9.8 33 81-113 69-101 (197)
170 cd03019 DsbA_DsbA DsbA family, 97.0 0.018 3.9E-07 43.9 11.4 43 88-131 14-56 (178)
171 PF13778 DUF4174: Domain of un 97.0 0.012 2.6E-07 42.2 9.6 107 84-223 3-111 (118)
172 KOG0191 Thioredoxin/protein di 97.0 0.0034 7.4E-08 54.4 7.9 43 89-131 162-205 (383)
173 PF02114 Phosducin: Phosducin; 96.9 0.012 2.7E-07 48.3 9.7 42 88-131 145-186 (265)
174 PF13911 AhpC-TSA_2: AhpC/TSA 96.8 0.011 2.3E-07 42.1 8.2 87 111-209 2-113 (115)
175 KOG3425 Uncharacterized conser 96.7 0.003 6.4E-08 44.8 4.3 43 88-131 24-74 (128)
176 PRK11200 grxA glutaredoxin 1; 96.5 0.0096 2.1E-07 39.9 5.7 37 93-131 3-39 (85)
177 cd03023 DsbA_Com1_like DsbA fa 96.4 0.007 1.5E-07 44.8 5.1 41 88-130 4-44 (154)
178 PF13462 Thioredoxin_4: Thiore 96.2 0.017 3.7E-07 43.2 6.2 49 82-131 5-55 (162)
179 cd02976 NrdH NrdH-redoxin (Nrd 96.0 0.035 7.7E-07 35.3 6.4 32 93-131 2-33 (73)
180 COG4312 Uncharacterized protei 95.7 0.052 1.1E-06 42.7 7.0 81 73-163 56-144 (247)
181 PRK10329 glutaredoxin-like pro 95.6 0.19 4E-06 33.4 8.7 33 93-132 3-35 (81)
182 cd03419 GRX_GRXh_1_2_like Glut 95.6 0.041 8.8E-07 36.2 5.3 34 93-131 2-35 (82)
183 PF00462 Glutaredoxin: Glutare 95.5 0.068 1.5E-06 33.1 5.8 33 93-132 1-33 (60)
184 cd03418 GRX_GRXb_1_3_like Glut 95.3 0.1 2.3E-06 33.6 6.6 33 93-132 2-34 (75)
185 KOG0911 Glutaredoxin-related p 95.3 0.017 3.8E-07 45.5 3.0 43 88-132 16-58 (227)
186 cd02066 GRX_family Glutaredoxi 95.0 0.1 2.2E-06 32.8 5.8 32 93-131 2-33 (72)
187 TIGR02181 GRX_bact Glutaredoxi 95.0 0.091 2E-06 34.4 5.6 31 94-131 2-32 (79)
188 KOG4498 Uncharacterized conser 95.0 0.41 8.9E-06 36.9 9.6 55 75-129 35-91 (197)
189 TIGR02183 GRXA Glutaredoxin, G 94.8 0.1 2.2E-06 35.0 5.5 37 93-131 2-38 (86)
190 TIGR03143 AhpF_homolog putativ 94.6 0.28 6.1E-06 44.7 9.5 40 89-130 476-515 (555)
191 KOG0914 Thioredoxin-like prote 94.6 0.054 1.2E-06 42.7 4.1 44 88-131 143-186 (265)
192 cd03027 GRX_DEP Glutaredoxin ( 94.6 0.24 5.2E-06 31.9 6.7 31 94-131 4-34 (73)
193 TIGR02190 GlrX-dom Glutaredoxi 94.4 0.17 3.6E-06 33.3 5.7 36 89-131 6-41 (79)
194 PRK10954 periplasmic protein d 94.1 0.096 2.1E-06 41.3 4.8 43 88-131 36-81 (207)
195 COG1331 Highly conserved prote 93.8 0.39 8.4E-06 44.2 8.5 81 87-206 41-124 (667)
196 COG4545 Glutaredoxin-related p 93.7 0.098 2.1E-06 33.9 3.3 42 94-149 5-46 (85)
197 PHA03050 glutaredoxin; Provisi 93.7 0.12 2.7E-06 36.4 4.1 22 93-114 15-36 (108)
198 KOG0913 Thiol-disulfide isomer 93.6 0.05 1.1E-06 43.3 2.3 41 88-129 39-79 (248)
199 TIGR02194 GlrX_NrdH Glutaredox 93.2 0.31 6.6E-06 31.3 5.2 31 94-131 2-32 (72)
200 PF11009 DUF2847: Protein of u 93.2 0.69 1.5E-05 32.4 7.2 43 88-131 18-60 (105)
201 cd02983 P5_C P5 family, C-term 93.1 0.79 1.7E-05 33.4 7.8 91 90-225 21-116 (130)
202 KOG1672 ATP binding protein [P 93.1 0.42 9.1E-06 37.1 6.5 75 88-211 83-157 (211)
203 TIGR02189 GlrX-like_plant Glut 93.1 0.39 8.4E-06 33.2 5.9 32 93-131 10-41 (99)
204 COG3054 Predicted transcriptio 92.9 0.2 4.3E-06 37.2 4.2 140 64-221 24-177 (184)
205 TIGR00365 monothiol glutaredox 92.9 0.74 1.6E-05 31.7 7.0 37 88-131 10-50 (97)
206 PLN03098 LPA1 LOW PSII ACCUMUL 92.7 0.97 2.1E-05 39.8 8.9 68 64-132 271-338 (453)
207 PRK10638 glutaredoxin 3; Provi 92.4 0.76 1.6E-05 30.4 6.4 32 93-131 4-35 (83)
208 PRK15317 alkyl hydroperoxide r 92.4 1 2.2E-05 40.8 9.1 67 61-129 78-154 (517)
209 cd03028 GRX_PICOT_like Glutare 92.3 0.9 2E-05 30.6 6.8 37 88-131 6-46 (90)
210 cd03029 GRX_hybridPRX5 Glutare 92.1 0.58 1.3E-05 29.9 5.4 32 93-131 3-34 (72)
211 cd02972 DsbA_family DsbA famil 92.0 0.22 4.7E-06 33.2 3.5 38 93-131 1-38 (98)
212 PF13848 Thioredoxin_6: Thiore 91.3 2 4.4E-05 32.5 8.6 42 89-131 94-136 (184)
213 TIGR01617 arsC_related transcr 91.2 0.58 1.3E-05 33.3 5.1 50 95-156 3-52 (117)
214 cd03035 ArsC_Yffb Arsenate Red 90.8 0.73 1.6E-05 32.2 5.2 48 94-153 2-49 (105)
215 TIGR03143 AhpF_homolog putativ 90.7 1.9 4.2E-05 39.3 9.2 91 85-225 362-455 (555)
216 PRK10824 glutaredoxin-4; Provi 90.7 1.1 2.4E-05 31.9 6.0 37 88-131 13-53 (115)
217 cd03036 ArsC_like Arsenate Red 90.6 0.73 1.6E-05 32.5 5.1 48 95-154 3-50 (111)
218 COG0695 GrxC Glutaredoxin and 90.2 1 2.3E-05 29.7 5.3 33 93-132 3-35 (80)
219 cd03032 ArsC_Spx Arsenate Redu 89.8 0.85 1.8E-05 32.4 4.9 49 95-155 4-52 (115)
220 TIGR03140 AhpF alkyl hydropero 89.7 2.7 5.9E-05 38.0 9.2 66 61-128 79-154 (515)
221 PRK01655 spxA transcriptional 89.3 0.99 2.2E-05 32.9 5.1 50 94-155 3-52 (131)
222 cd02977 ArsC_family Arsenate R 89.2 1.2 2.5E-05 31.0 5.2 48 94-153 2-49 (105)
223 PF06764 DUF1223: Protein of u 89.2 9.4 0.0002 30.1 11.3 38 93-133 1-39 (202)
224 KOG3414 Component of the U4/U6 89.1 5.3 0.00011 28.9 8.3 43 88-131 22-64 (142)
225 COG1651 DsbG Protein-disulfide 89.0 0.93 2E-05 36.5 5.2 49 75-123 70-118 (244)
226 PRK12559 transcriptional regul 87.9 1.9 4.1E-05 31.5 5.7 46 94-151 3-48 (131)
227 PHA03075 glutaredoxin-like pro 87.8 0.48 1E-05 33.5 2.3 39 90-128 2-40 (123)
228 KOG2507 Ubiquitin regulatory p 87.4 3.5 7.5E-05 35.9 7.7 38 187-224 74-111 (506)
229 cd03073 PDI_b'_ERp72_ERp57 PDI 85.0 6.9 0.00015 27.5 7.2 32 191-223 78-110 (111)
230 PRK13344 spxA transcriptional 83.5 4.4 9.5E-05 29.6 5.8 50 95-156 4-53 (132)
231 PTZ00062 glutaredoxin; Provisi 82.7 5.9 0.00013 31.3 6.6 37 88-131 111-151 (204)
232 cd03072 PDI_b'_ERp44 PDIb' fam 81.8 15 0.00032 25.8 7.9 35 191-225 74-109 (111)
233 PF02966 DIM1: Mitosis protein 81.4 5.5 0.00012 29.0 5.5 43 88-131 19-61 (133)
234 KOG2961 Predicted hydrolase (H 81.3 8.5 0.00018 28.9 6.5 104 67-177 20-131 (190)
235 COG3019 Predicted metal-bindin 80.2 21 0.00046 26.3 8.5 48 92-158 27-74 (149)
236 KOG3170 Conserved phosducin-li 79.7 8.2 0.00018 30.3 6.2 40 88-129 110-149 (240)
237 PF06053 DUF929: Domain of unk 77.0 4.6 0.0001 32.9 4.4 33 88-120 57-89 (249)
238 KOG1752 Glutaredoxin and relat 76.4 9.7 0.00021 26.6 5.4 47 89-148 13-59 (104)
239 PF05768 DUF836: Glutaredoxin- 75.6 4.4 9.5E-05 26.6 3.4 52 93-159 2-53 (81)
240 PRK10026 arsenate reductase; P 73.6 34 0.00074 25.3 9.3 49 94-154 5-53 (141)
241 KOG4614 Inner membrane protein 73.3 5.6 0.00012 32.0 3.9 27 193-219 250-276 (287)
242 COG1651 DsbG Protein-disulfide 70.8 2.8 6E-05 33.7 1.8 30 88-117 117-146 (244)
243 TIGR00014 arsC arsenate reduct 70.1 17 0.00036 25.7 5.5 49 95-155 3-51 (114)
244 COG1393 ArsC Arsenate reductas 69.9 16 0.00035 26.0 5.4 52 94-157 4-55 (117)
245 TIGR03759 conj_TIGR03759 integ 68.8 17 0.00038 28.4 5.6 55 92-159 111-165 (200)
246 PRK12759 bifunctional gluaredo 68.6 12 0.00027 32.8 5.5 33 93-132 4-36 (410)
247 COG2179 Predicted hydrolase of 68.4 18 0.0004 27.6 5.6 60 90-158 29-89 (175)
248 PF01323 DSBA: DSBA-like thior 68.2 8.9 0.00019 29.2 4.1 40 92-131 1-40 (193)
249 cd03033 ArsC_15kD Arsenate Red 67.4 21 0.00046 25.2 5.5 48 94-153 3-50 (113)
250 TIGR00995 3a0901s06TIC22 chlor 66.1 75 0.0016 26.3 9.6 59 66-131 79-142 (270)
251 PF13462 Thioredoxin_4: Thiore 65.7 9.3 0.0002 28.1 3.7 30 187-222 133-162 (162)
252 PF04278 Tic22: Tic22-like fam 62.6 89 0.0019 25.9 11.6 59 67-131 73-136 (274)
253 PRK10853 putative reductase; P 62.6 20 0.00043 25.6 4.7 48 95-154 4-51 (118)
254 cd03034 ArsC_ArsC Arsenate Red 62.2 26 0.00057 24.5 5.3 48 95-154 3-50 (112)
255 cd02979 PHOX_C FAD-dependent P 61.9 68 0.0015 24.3 10.7 51 66-118 1-55 (167)
256 KOG2603 Oligosaccharyltransfer 61.4 1E+02 0.0022 26.1 9.2 49 72-120 43-95 (331)
257 PF06953 ArsD: Arsenical resis 61.3 59 0.0013 23.4 7.1 35 98-132 10-50 (123)
258 PLN02640 glucose-6-phosphate 1 61.1 45 0.00097 30.7 7.6 69 64-132 60-131 (573)
259 TIGR01616 nitro_assoc nitrogen 59.8 39 0.00084 24.4 5.8 46 93-149 3-48 (126)
260 cd03060 GST_N_Omega_like GST_N 57.4 33 0.00073 21.3 4.7 31 95-130 3-33 (71)
261 PF08821 CGGC: CGGC domain; I 57.4 14 0.0003 25.9 3.1 74 77-154 23-100 (107)
262 PF07411 DUF1508: Domain of un 57.2 30 0.00065 20.4 4.1 34 192-225 6-39 (49)
263 cd03025 DsbA_FrnE_like DsbA fa 57.2 15 0.00032 28.1 3.5 27 93-119 3-29 (193)
264 PF11211 DUF2997: Protein of u 56.6 25 0.00055 20.8 3.6 30 195-224 3-34 (48)
265 PF07976 Phe_hydrox_dim: Pheno 55.8 73 0.0016 24.2 7.1 73 59-131 26-116 (169)
266 PF03960 ArsC: ArsC family; I 54.1 28 0.00061 24.2 4.3 51 96-158 1-51 (110)
267 PF07449 HyaE: Hydrogenase-1 e 53.0 60 0.0013 22.8 5.6 27 187-214 79-105 (107)
268 KOG1364 Predicted ubiquitin re 51.2 23 0.0005 30.2 3.9 39 187-225 151-190 (356)
269 PF01323 DSBA: DSBA-like thior 50.5 20 0.00043 27.2 3.3 30 187-221 164-193 (193)
270 PF05673 DUF815: Protein of un 48.6 78 0.0017 25.8 6.4 92 91-199 54-146 (249)
271 PF13743 Thioredoxin_5: Thiore 47.8 25 0.00055 26.8 3.4 33 95-128 2-34 (176)
272 PRK08294 phenol 2-monooxygenas 46.9 2.5E+02 0.0054 26.3 10.6 38 61-98 461-502 (634)
273 COG2761 FrnE Predicted dithiol 42.8 1.8E+02 0.0038 23.4 12.4 40 90-129 4-45 (225)
274 PF08806 Sep15_SelM: Sep15/Sel 40.8 39 0.00086 22.2 3.0 33 191-223 42-75 (78)
275 PF08496 Peptidase_S49_N: Pept 38.5 25 0.00054 26.5 2.1 31 190-225 96-126 (155)
276 PRK10887 glmM phosphoglucosami 37.6 2.1E+02 0.0046 25.3 8.1 11 194-204 244-254 (443)
277 cd03031 GRX_GRX_like Glutaredo 37.4 1.5E+02 0.0032 22.0 6.0 25 100-131 15-39 (147)
278 PRK14324 glmM phosphoglucosami 37.0 2E+02 0.0044 25.5 7.9 43 122-167 199-246 (446)
279 PF04134 DUF393: Protein of un 36.8 23 0.0005 24.6 1.6 31 96-129 2-32 (114)
280 cd03041 GST_N_2GST_N GST_N fam 36.0 1.1E+02 0.0025 19.3 6.2 18 96-113 5-22 (77)
281 cd03063 TRX_Fd_FDH_beta TRX-li 35.1 97 0.0021 21.0 4.3 31 192-225 49-79 (92)
282 cd03040 GST_N_mPGES2 GST_N fam 34.2 40 0.00086 21.3 2.3 19 95-113 4-22 (77)
283 PF01216 Calsequestrin: Calseq 34.1 3.1E+02 0.0068 23.7 11.0 33 191-225 113-145 (383)
284 PRK14316 glmM phosphoglucosami 33.5 2.5E+02 0.0055 24.8 7.9 20 139-159 219-238 (448)
285 TIGR01753 flav_short flavodoxi 33.4 1.5E+02 0.0032 21.0 5.5 15 87-101 78-92 (140)
286 PF02563 Poly_export: Polysacc 32.8 58 0.0013 21.3 3.0 32 194-225 32-68 (82)
287 PRK14323 glmM phosphoglucosami 32.3 2.5E+02 0.0054 24.8 7.7 11 194-204 246-256 (440)
288 cd03024 DsbA_FrnE DsbA family, 32.1 2.3E+02 0.0049 21.5 6.8 24 96-119 4-27 (201)
289 cd05802 GlmM GlmM is a bacteri 32.1 2.7E+02 0.0058 24.5 7.8 11 194-204 242-252 (434)
290 PF12017 Tnp_P_element: Transp 31.9 1.8E+02 0.0039 23.6 6.1 25 108-132 195-219 (236)
291 PF01740 STAS: STAS domain; I 31.0 1.8E+02 0.0038 19.9 6.0 40 90-130 49-88 (117)
292 PRK14315 glmM phosphoglucosami 31.0 3E+02 0.0065 24.4 8.0 12 193-204 248-259 (448)
293 cd03051 GST_N_GTT2_like GST_N 31.0 49 0.0011 20.3 2.3 19 95-113 3-21 (74)
294 COG2607 Predicted ATPase (AAA+ 30.3 2.6E+02 0.0057 23.1 6.6 79 109-199 100-179 (287)
295 cd02981 PDI_b_family Protein D 30.0 1.6E+02 0.0035 19.2 8.4 36 89-128 17-52 (97)
296 PRK14314 glmM phosphoglucosami 28.2 2.9E+02 0.0062 24.5 7.4 11 194-204 250-260 (450)
297 PF04723 GRDA: Glycine reducta 28.2 64 0.0014 23.8 2.6 38 94-131 33-77 (150)
298 PF10589 NADH_4Fe-4S: NADH-ubi 27.9 14 0.0003 21.6 -0.7 21 100-120 18-38 (46)
299 PF02670 DXP_reductoisom: 1-de 27.6 1E+02 0.0022 22.4 3.6 38 113-159 16-53 (129)
300 cd03084 phosphohexomutase The 27.5 2.7E+02 0.0059 23.7 6.9 12 193-204 187-198 (355)
301 KOG3384 Selenoprotein [General 27.2 2.4E+02 0.0052 20.8 5.4 35 191-225 117-152 (154)
302 PF11072 DUF2859: Protein of u 27.2 2.3E+02 0.0049 21.0 5.4 69 105-201 72-140 (142)
303 PRK09542 manB phosphomannomuta 27.0 2.1E+02 0.0046 25.3 6.3 12 193-204 239-250 (445)
304 PF10790 DUF2604: Protein of U 27.0 62 0.0013 20.4 2.1 23 64-86 31-53 (76)
305 PRK12359 flavodoxin FldB; Prov 26.8 2.3E+02 0.005 21.6 5.7 9 215-223 156-164 (172)
306 COG1791 Uncharacterized conser 26.7 3E+02 0.0065 21.2 8.3 54 98-156 43-96 (181)
307 PF14427 Pput2613-deam: Pput_2 26.6 94 0.002 21.9 3.1 44 68-111 41-88 (118)
308 PF01106 NifU: NifU-like domai 26.2 1.8E+02 0.0038 18.4 4.4 33 78-111 15-47 (68)
309 COG4284 UDP-glucose pyrophosph 26.1 4.9E+02 0.011 23.5 9.9 55 74-133 196-251 (472)
310 PLN02539 glucose-6-phosphate 1 26.0 2.5E+02 0.0054 25.5 6.5 46 87-132 14-61 (491)
311 cd00570 GST_N_family Glutathio 25.6 64 0.0014 19.0 2.1 19 96-114 4-22 (71)
312 TIGR01455 glmM phosphoglucosam 25.3 4.2E+02 0.0092 23.4 7.9 11 194-204 245-255 (443)
313 PF07801 DUF1647: Protein of u 25.1 2.2E+02 0.0048 21.1 5.1 61 70-130 38-99 (142)
314 TIGR02652 conserved hypothetic 25.0 22 0.00047 26.1 -0.2 15 98-112 9-23 (163)
315 cd03022 DsbA_HCCA_Iso DsbA fam 25.0 71 0.0015 24.1 2.6 35 96-131 4-38 (192)
316 PF09654 DUF2396: Protein of u 24.7 22 0.00048 26.1 -0.2 14 99-112 7-20 (161)
317 PF03544 TonB_C: Gram-negative 24.5 35 0.00075 21.7 0.7 14 193-206 20-33 (79)
318 PRK11867 2-oxoglutarate ferred 24.5 82 0.0018 26.2 3.1 21 97-118 16-36 (286)
319 PF09822 ABC_transp_aux: ABC-t 24.2 3.9E+02 0.0084 21.6 10.3 74 78-159 6-91 (271)
320 KOG1014 17 beta-hydroxysteroid 24.1 2.8E+02 0.0061 23.5 6.1 93 83-201 43-135 (312)
321 PF13103 TonB_2: TonB C termin 23.8 1E+02 0.0022 19.9 3.0 32 193-224 30-62 (85)
322 cd03045 GST_N_Delta_Epsilon GS 23.7 1.9E+02 0.004 17.7 4.9 19 95-113 3-21 (74)
323 TIGR01352 tonB_Cterm TonB fami 23.7 1.2E+02 0.0026 18.7 3.2 15 193-207 14-28 (74)
324 PRK14321 glmM phosphoglucosami 23.4 3.9E+02 0.0084 23.7 7.3 12 193-204 238-249 (449)
325 PRK14318 glmM phosphoglucosami 23.4 4.9E+02 0.011 23.0 8.0 12 193-204 247-258 (448)
326 PF02526 GBP_repeat: Glycophor 23.4 16 0.00034 19.7 -0.9 27 198-224 4-30 (38)
327 PRK13265 glycine/sarcosine/bet 23.3 89 0.0019 23.0 2.6 38 94-131 34-78 (154)
328 cd03037 GST_N_GRX2 GST_N famil 23.2 69 0.0015 19.8 1.9 18 96-113 4-21 (71)
329 PRK14317 glmM phosphoglucosami 22.9 4E+02 0.0087 23.7 7.3 12 193-204 260-271 (465)
330 PF14307 Glyco_tran_WbsX: Glyc 22.5 1.9E+02 0.0042 24.7 5.0 44 88-131 157-200 (345)
331 TIGR03765 ICE_PFL_4695 integra 22.4 2.8E+02 0.0061 19.4 5.8 68 106-201 35-102 (105)
332 COG0821 gcpE 1-hydroxy-2-methy 22.2 1.7E+02 0.0038 25.0 4.5 33 192-225 320-352 (361)
333 cd03089 PMM_PGM The phosphoman 21.5 3.6E+02 0.0078 23.8 6.7 11 194-204 239-249 (443)
334 PF02743 Cache_1: Cache domain 21.3 55 0.0012 21.0 1.2 15 193-207 55-69 (81)
335 COG1535 EntB Isochorismate hyd 21.3 93 0.002 24.2 2.5 39 91-129 40-78 (218)
336 cd03059 GST_N_SspA GST_N famil 20.6 89 0.0019 19.2 2.1 19 95-113 3-21 (73)
337 cd08344 MhqB_like_N N-terminal 20.6 1.2E+02 0.0026 20.4 2.9 18 193-210 93-110 (112)
338 KOG1387 Glycosyltransferase [C 20.3 2.9E+02 0.0062 24.1 5.4 61 88-155 40-104 (465)
339 cd05803 PGM_like4 This PGM-lik 20.3 6E+02 0.013 22.4 8.2 12 193-204 246-257 (445)
340 PRK00366 ispG 4-hydroxy-3-meth 20.2 1.9E+02 0.0041 25.0 4.3 30 194-223 327-356 (360)
341 PRK06756 flavodoxin; Provision 20.0 3.1E+02 0.0068 19.7 5.2 38 86-127 80-119 (148)
No 1
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=2.4e-34 Score=229.65 Aligned_cols=164 Identities=72% Similarity=1.213 Sum_probs=145.2
Q ss_pred cccCCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCH
Q 027134 62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (227)
Q Consensus 62 ~~~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~ 141 (227)
....|..+|+|+++|.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++|++|++|+.|++..+++++.
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999998776777788
Q ss_pred HHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHH
Q 027134 142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIK 221 (227)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~ 221 (227)
+++++|+.++++++||++.+.|.++....+.|+++....++..|+.+.+.|++||||++|+|++++.|..+++++++.|+
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~ 231 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQ 231 (236)
T ss_pred HHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHH
Confidence 99999985678999999865566676678888877555455445467889999999999999999999999999999999
Q ss_pred HHhh
Q 027134 222 KLLE 225 (227)
Q Consensus 222 ~lL~ 225 (227)
++|+
T Consensus 232 ~lL~ 235 (236)
T PLN02399 232 KLLA 235 (236)
T ss_pred HHhc
Confidence 9986
No 2
>PLN02412 probable glutathione peroxidase
Probab=100.00 E-value=7.7e-34 Score=217.66 Aligned_cols=164 Identities=74% Similarity=1.193 Sum_probs=143.9
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~ 143 (227)
.....+|+|+++|.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++|+.|++|+.|.+...++++.++
T Consensus 4 ~~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 4 ESPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred ccCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999998765555567777
Q ss_pred HHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
+++++.++++++||++.+.|.++....+.|+++....++..+.++.+.|++||||++|+|++++.|..+++++++.|+++
T Consensus 84 ~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~ 163 (167)
T PLN02412 84 IQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNL 163 (167)
T ss_pred HHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 77765478899999986666777667888988876655555556888999999999999999999999999999999999
Q ss_pred hhhC
Q 027134 224 LETA 227 (227)
Q Consensus 224 L~~~ 227 (227)
|+++
T Consensus 164 l~~~ 167 (167)
T PLN02412 164 LGQA 167 (167)
T ss_pred HhhC
Confidence 9874
No 3
>PTZ00056 glutathione peroxidase; Provisional
Probab=100.00 E-value=6.7e-33 Score=217.79 Aligned_cols=162 Identities=41% Similarity=0.729 Sum_probs=141.2
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~ 143 (227)
..+..+|+|+++|.+|+.+++++++||++||+|||+|||+|+.++|.|++++++|+++|++|++|++|++.+++.++.++
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~ 93 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKD 93 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHH
Confidence 66789999999999999999999999999999999999999999999999999999999999999999888788889999
Q ss_pred HHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCC---C--CccccceeEEEECCCCcEEEecCCCCChhhHHH
Q 027134 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF---G--DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEK 218 (227)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~--~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~ 218 (227)
+++|+ ++++++||++.+.+.++....++++++........ + .++.+.|++||||++|+|++++.|..+++.+++
T Consensus 94 ~~~f~-~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~ 172 (199)
T PTZ00056 94 IRKFN-DKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEK 172 (199)
T ss_pred HHHHH-HHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHH
Confidence 99999 78899999997766777777888877754322111 1 134555689999999999999999988889999
Q ss_pred HHHHHhhh
Q 027134 219 DIKKLLET 226 (227)
Q Consensus 219 ~i~~lL~~ 226 (227)
.|+++|++
T Consensus 173 ~I~~ll~~ 180 (199)
T PTZ00056 173 KIAELLGV 180 (199)
T ss_pred HHHHHHHH
Confidence 99999864
No 4
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.98 E-value=1.7e-31 Score=201.83 Aligned_cols=150 Identities=61% Similarity=1.091 Sum_probs=123.1
Q ss_pred cCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027134 69 VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (227)
Q Consensus 69 ~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~ 148 (227)
+|+|+++|.+|+.+++++++||+|||+||++||| |+.++|.|++++++|+++|++|++|++|.++..++++.+.+++|+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence 6999999999999999999999999999999999 999999999999999988999999999876555667789999999
Q ss_pred HhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 027134 149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKD 219 (227)
Q Consensus 149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (227)
+++++++||++.+.|.++......|+++....++..++.+.+.|++||||++|+|++++.|..+++++++.
T Consensus 81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 44479999998655555554566676544333322223456667999999999999999998887776654
No 5
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.97 E-value=8.6e-31 Score=202.24 Aligned_cols=158 Identities=41% Similarity=0.806 Sum_probs=142.6
Q ss_pred CccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHH
Q 027134 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE 146 (227)
Q Consensus 67 ~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~ 146 (227)
..+++|++++.+|+.+++++|+||++||.|||+||+.|. +++.|++++++|+++|++|++|+.++|+.+++++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 358999999999999999999999999999999999996 7999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCC--------------------CCCCccccceeEEEECCCCcEEEe
Q 027134 147 FACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG--------------------LFGDSIKWNFSKFLVDKEGNVVER 206 (227)
Q Consensus 147 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~P~~~lid~~G~I~~~ 206 (227)
|++++++++||++.+.|.+|....++|+++....+. ..+..|+|.-+-||||++|+++.+
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r 161 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR 161 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence 995578999999999999999999999999765431 012368899999999999999999
Q ss_pred cCCCCChhh--HHHHHHHHhh
Q 027134 207 YAPTTSPLS--IEKDIKKLLE 225 (227)
Q Consensus 207 ~~g~~~~~~--l~~~i~~lL~ 225 (227)
+.+...+++ +++.|+++|.
T Consensus 162 ~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 162 FSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred ECCCCCCCHHHHHHHHHHHhc
Confidence 999888877 9999999884
No 6
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.97 E-value=1.2e-30 Score=202.86 Aligned_cols=162 Identities=44% Similarity=0.773 Sum_probs=135.1
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEE-EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~v-lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~ 142 (227)
..+..+|+|+++|.+|+.+++++++||++ |+.+||+|||+|+.++|.|++++++|+++|+.|++|++|.+...++.+.+
T Consensus 15 ~~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 15 PPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence 34678999999999999999999999965 45669999999999999999999999999999999999865555666778
Q ss_pred HHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCC--CCcccccee---EEEECCCCcEEEecCCCCChhhHH
Q 027134 143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF--GDSIKWNFS---KFLVDKEGNVVERYAPTTSPLSIE 217 (227)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~i~~~P~---~~lid~~G~I~~~~~g~~~~~~l~ 217 (227)
++.+|+.++++++||++.+.|.++....++|+++....+... .+++..+|+ +||||++|+|++++.|..+++.++
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~ 174 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMI 174 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHH
Confidence 899998567899999996666777666788887765433211 125667885 699999999999999999888999
Q ss_pred HHHHHHhh
Q 027134 218 KDIKKLLE 225 (227)
Q Consensus 218 ~~i~~lL~ 225 (227)
+.|+++|+
T Consensus 175 ~~I~~ll~ 182 (183)
T PTZ00256 175 QDIEKLLN 182 (183)
T ss_pred HHHHHHhc
Confidence 99999986
No 7
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.97 E-value=3.4e-30 Score=194.97 Aligned_cols=148 Identities=40% Similarity=0.732 Sum_probs=125.7
Q ss_pred cCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027134 69 VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (227)
Q Consensus 69 ~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~ 148 (227)
+-+|++.|.+|+.+++++++||++||+||++|||+|+.++|.|++++++|+++|+.|++|+.+.++..++++.+.+++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998776666677899999999
Q ss_pred HhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCcccccee----EEEECCCCcEEEecCCCCChhhHHHHHHHHh
Q 027134 149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFS----KFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~----~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL 224 (227)
+++++++||++.+.+..+......|++.... ...+|+ +||||++|+|++++.|..+++++++.|+++|
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~--------~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDS--------SKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhc--------CCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 4448999999865444555556666654321 123576 9999999999999999999999999998875
No 8
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-28 Score=177.15 Aligned_cols=159 Identities=58% Similarity=1.019 Sum_probs=149.7
Q ss_pred CccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHH
Q 027134 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE 146 (227)
Q Consensus 67 ~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~ 146 (227)
..+.+|++++.+|+.++|++|+||++||.=.||.|+.-+ +...|+.||++|+++|++|+++..++|+.++|++.+++++
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHH
Confidence 356799999999999999999999999999999999887 8899999999999999999999999999999999999999
Q ss_pred HHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCC-CCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 147 FACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG-LFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 147 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
|+..+++.+||++...+.+|.++.++|+++....++ ..+..|+|.-+-||||++|+|+.|+....+|++++..|+++|+
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 999999999999999999999999999999887665 4557899999999999999999999999999999999999986
Q ss_pred h
Q 027134 226 T 226 (227)
Q Consensus 226 ~ 226 (227)
+
T Consensus 162 ~ 162 (162)
T COG0386 162 E 162 (162)
T ss_pred C
Confidence 3
No 9
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.95 E-value=1.3e-27 Score=186.25 Aligned_cols=136 Identities=21% Similarity=0.278 Sum_probs=113.9
Q ss_pred cCCCccCCeEEecCC--CCeeecCCC-CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCC
Q 027134 64 QSKTSVHDFSVKDAK--GQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~--G~~v~l~~~-~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~ 140 (227)
.+|.++|+|++.|.+ |+.++++++ +||++||+||++||++|+.++|.|+++++ ++++|++|+.|+ +
T Consensus 40 ~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~-------~ 108 (185)
T PRK15412 40 LIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKD-------D 108 (185)
T ss_pred hcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------C
Confidence 679999999999998 477777765 79999999999999999999999988754 469999999874 6
Q ss_pred HHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 027134 141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i 220 (227)
.+.+++|+ ++++.+|+.+. .|..+. ....| ++.++|++|+||++|+|++++.|..+.+++++.|
T Consensus 109 ~~~~~~~~-~~~~~~~~~~~-~D~~~~-~~~~~-------------gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i 172 (185)
T PRK15412 109 RQKAISWL-KELGNPYALSL-FDGDGM-LGLDL-------------GVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEI 172 (185)
T ss_pred HHHHHHHH-HHcCCCCceEE-EcCCcc-HHHhc-------------CCCcCCeEEEECCCceEEEEEecCCCHHHHHHHH
Confidence 78889998 67899998531 344333 33334 7888999999999999999999999999999999
Q ss_pred HHHhhh
Q 027134 221 KKLLET 226 (227)
Q Consensus 221 ~~lL~~ 226 (227)
+.++++
T Consensus 173 ~~~~~~ 178 (185)
T PRK15412 173 KPLWEK 178 (185)
T ss_pred HHHHHH
Confidence 998864
No 10
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.95 E-value=8.2e-28 Score=180.42 Aligned_cols=124 Identities=29% Similarity=0.515 Sum_probs=104.7
Q ss_pred cCCCccCCeEEec--CCCCeeecCCCCCCEEEEEEecC-CCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCC
Q 027134 64 QSKTSVHDFSVKD--AKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (227)
Q Consensus 64 ~~g~~~p~f~l~~--~~G~~v~l~~~~gk~vlv~F~as-wC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~ 140 (227)
++|+.+|+|++++ .+|+.+++++++||++||+||++ |||+|+.++|.|++++++|+++++.+++|+.+.
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~-------- 72 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD-------- 72 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS--------
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC--------
Confidence 4799999999966 99999999999999999999999 999999999999999999999999999999883
Q ss_pred HHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccc---------cceeEEEECCCCcEEEecCCCC
Q 027134 141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK---------WNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~---------~~P~~~lid~~G~I~~~~~g~~ 211 (227)
...+.+|+ ++++.+|+++ .|.++. ....| ++. ++|+++|||++|+|++++.|..
T Consensus 73 ~~~~~~~~-~~~~~~~~~~--~D~~~~-~~~~~-------------~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~ 135 (146)
T PF08534_consen 73 DPPVREFL-KKYGINFPVL--SDPDGA-LAKAL-------------GVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPD 135 (146)
T ss_dssp SHHHHHHH-HHTTTTSEEE--EETTSH-HHHHT-------------TCEEECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred CHHHHHHH-HhhCCCceEE--echHHH-HHHHh-------------CCccccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence 34488888 6789999998 453332 33333 433 7999999999999999999877
Q ss_pred C
Q 027134 212 S 212 (227)
Q Consensus 212 ~ 212 (227)
+
T Consensus 136 ~ 136 (146)
T PF08534_consen 136 P 136 (146)
T ss_dssp T
T ss_pred C
Confidence 6
No 11
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.94 E-value=5.3e-26 Score=172.15 Aligned_cols=145 Identities=17% Similarity=0.281 Sum_probs=112.9
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEEEEecC-CCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~as-wC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~ 142 (227)
..|+.+|+|+++|.+|+.+++++++||++||+||++ ||+.|+.+++.|++++++++++|+++++|+.| +.+
T Consensus 5 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~~~ 76 (154)
T PRK09437 5 KAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------KPE 76 (154)
T ss_pred CCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHH
Confidence 789999999999999999999999999999999976 78889999999999999999999999999987 679
Q ss_pred HHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccc-cceeEEEECCCCcEEEecCCCCChhhHHHHHH
Q 027134 143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK-WNFSKFLVDKEGNVVERYAPTTSPLSIEKDIK 221 (227)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~-~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~ 221 (227)
++++|+ ++++.+|+++ .|..+. ..+.|+....... .+.... ..|++||||++|+|++++.|....+.+.+.++
T Consensus 77 ~~~~~~-~~~~~~~~~l--~D~~~~-~~~~~gv~~~~~~--~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 77 KLSRFA-EKELLNFTLL--SDEDHQ-VAEQFGVWGEKKF--MGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred HHHHHH-HHhCCCCeEE--ECCCch-HHHHhCCCccccc--ccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 999999 6779999988 454432 3444432211000 000000 12788999999999999999776666555444
Q ss_pred H
Q 027134 222 K 222 (227)
Q Consensus 222 ~ 222 (227)
.
T Consensus 151 ~ 151 (154)
T PRK09437 151 Y 151 (154)
T ss_pred H
Confidence 3
No 12
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.94 E-value=2.5e-26 Score=167.40 Aligned_cols=123 Identities=26% Similarity=0.509 Sum_probs=103.4
Q ss_pred CCCccCCeEEecCCCCeeecCCCCCCEEEEEEecC-CCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHH
Q 027134 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (227)
Q Consensus 65 ~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~as-wC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~ 143 (227)
+|+.+|+|++++.+|+.+++++++||++||.||++ |||.|+.+++.|++++++|+++|+++++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 59999999999999999999999999999999988 99999999999999999999999999999998 7889
Q ss_pred HHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEe
Q 027134 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER 206 (227)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~ 206 (227)
++++. ++++.+||++ .|.+.. ....|...... ....+|++||||++|+|+++
T Consensus 73 ~~~~~-~~~~~~~~~~--~D~~~~-~~~~~~~~~~~-------~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFL-EEYGLPFPVL--SDPDGE-LAKAFGIEDEK-------DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHH-HHHTCSSEEE--EETTSH-HHHHTTCEETT-------TSEESEEEEEEETTSBEEEE
T ss_pred hhhhh-hhhccccccc--cCcchH-HHHHcCCcccc-------CCceEeEEEEECCCCEEEeC
Confidence 99998 6778999998 453332 44444111000 12279999999999999975
No 13
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-25 Score=165.59 Aligned_cols=163 Identities=69% Similarity=1.149 Sum_probs=155.0
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~ 143 (227)
.....+.+|+.+|.+|+.++|+.|+||++||.=-||.|+.-......|+.|+++|+++|++|++...++|+.++|++.++
T Consensus 9 ~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 9 DEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 44567899999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
+..++..+++..||++..+|.+|....++|++++...++..|++|+|.-+-||||++|+++.|+....++.+++..|+++
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~l 168 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKL 168 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHH
Confidence 99999889999999999999999999999999999999999999999999999999999999999988898999999999
Q ss_pred hhh
Q 027134 224 LET 226 (227)
Q Consensus 224 L~~ 226 (227)
|.+
T Consensus 169 L~~ 171 (171)
T KOG1651|consen 169 LAQ 171 (171)
T ss_pred hcC
Confidence 864
No 14
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.94 E-value=1.4e-25 Score=172.91 Aligned_cols=136 Identities=24% Similarity=0.458 Sum_probs=120.7
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~ 143 (227)
..|..+|+|++.+.+|+.+++++++||+++|+||++||++|+.+.+.+.+++++++++++.+++|+.|. +.+.
T Consensus 36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~-------~~~~ 108 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE-------TELA 108 (173)
T ss_pred CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC-------CHHH
Confidence 789999999999999999999999999999999999999999999999999999998889999999985 7789
Q ss_pred HHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
+++|+ ++++.+|+++ .|.... ..+.| ++.++|++|++|++|+|+..+.|..+.+++.+.++++
T Consensus 109 ~~~~~-~~~~~~~~~~--~d~~~~-~~~~~-------------~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 109 VKNFV-NRYGLTFPVA--IDKGRQ-VIDAY-------------GVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HHHHH-HHhCCCceEE--ECCcch-HHHHc-------------CCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 99999 7889999987 444332 34444 7888999999999999999999988888888887764
No 15
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.94 E-value=7.8e-26 Score=174.44 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=111.3
Q ss_pred cCCCccCCeEEecCCCC--eeecCCC-CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCC
Q 027134 64 QSKTSVHDFSVKDAKGQ--DVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~--~v~l~~~-~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~ 140 (227)
.+|.++|+|+++|.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ +++++++|+.|+ .
T Consensus 35 ~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~-------~ 103 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYKD-------Q 103 (173)
T ss_pred hcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------C
Confidence 78999999999999997 4555565 79999999999999999999999988764 369999999874 5
Q ss_pred HHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 027134 141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i 220 (227)
.++..+|+ ++++.+|+.+. .|.++. ....| ++.++|++|+||++|+|++++.|..+.+++++.|
T Consensus 104 ~~~~~~~~-~~~~~~f~~v~-~D~~~~-~~~~~-------------~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l 167 (173)
T TIGR00385 104 SQNALKFL-KELGNPYQAIL-IDPNGK-LGLDL-------------GVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGF 167 (173)
T ss_pred hHHHHHHH-HHcCCCCceEE-ECCCCc-hHHhc-------------CCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHH
Confidence 67777888 67789988431 344433 34444 7778999999999999999999999999999999
Q ss_pred HHHhh
Q 027134 221 KKLLE 225 (227)
Q Consensus 221 ~~lL~ 225 (227)
++++.
T Consensus 168 ~~~~~ 172 (173)
T TIGR00385 168 LPAME 172 (173)
T ss_pred HHHhh
Confidence 99875
No 16
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.94 E-value=7.9e-26 Score=168.31 Aligned_cols=138 Identities=22% Similarity=0.385 Sum_probs=111.2
Q ss_pred CccCCeEEecCCCCeeecCCCCCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027134 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ 145 (227)
Q Consensus 67 ~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~ 145 (227)
+.+|+|+++|.+|+.+++++++||++||+|| ++|||.|+.+++.|++++++++++++++++|+.| +.+.++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 3689999999999999999999999999999 5899999999999999999999889999999987 678999
Q ss_pred HHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 027134 146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i 220 (227)
+|+ ++++++|+++ .|.++. ..+.|+...... ++.....|++||||++|+|++++.|....+.+.+.+
T Consensus 73 ~~~-~~~~~~~~~l--~D~~~~-~~~~~gv~~~~~----~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 73 KFA-EKYGLPFPLL--SDPDGK-LAKAYGVWGEKK----KKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHH-HHhCCCceEE--ECCccH-HHHHhCCccccc----cccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 999 6779999988 454433 444442211100 001122499999999999999999988777676654
No 17
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.6e-25 Score=164.66 Aligned_cols=134 Identities=19% Similarity=0.363 Sum_probs=112.7
Q ss_pred ccCCCccCCeEEecCCCCeeecCCCCCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCH
Q 027134 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (227)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~ 141 (227)
..+|+.+|+|+|.+.+|+.++|+|++||+|||+|| ..++|.|..|+..+++.+++|++.|.+|++||.| +.
T Consensus 4 l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s~ 75 (157)
T COG1225 4 LKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------SP 75 (157)
T ss_pred CCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------CH
Confidence 38899999999999999999999999999999999 8899999999999999999999999999999988 89
Q ss_pred HHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcC--CCCCCCccccceeEEEECCCCcEEEecCCCC
Q 027134 142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK--GGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~ 211 (227)
+..++|+ ++++++|+++ .|.+.. +.+.|..+.... |+.. .-..+++||||++|+|++.+....
T Consensus 76 ~~~~~F~-~k~~L~f~LL--SD~~~~-v~~~ygv~~~k~~~gk~~---~~~~R~TfvId~dG~I~~~~~~v~ 140 (157)
T COG1225 76 KSHKKFA-EKHGLTFPLL--SDEDGE-VAEAYGVWGEKKMYGKEY---MGIERSTFVIDPDGKIRYVWRKVK 140 (157)
T ss_pred HHHHHHH-HHhCCCceee--ECCcHH-HHHHhCcccccccCcccc---ccccceEEEECCCCeEEEEecCCC
Confidence 9999999 7889999999 454444 566776554221 1111 123579999999999999985433
No 18
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.93 E-value=2.2e-25 Score=171.61 Aligned_cols=144 Identities=23% Similarity=0.406 Sum_probs=118.5
Q ss_pred CCccCCeEEecCCCCeeecCCC-CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHH
Q 027134 66 KTSVHDFSVKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI 144 (227)
Q Consensus 66 g~~~p~f~l~~~~G~~v~l~~~-~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~ 144 (227)
|+.+|+|++.+.+|+.++++++ +||++||+||++|||.|..+++.|.+++++|+++++.+++|++|.....+.++.+++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 6789999999999999999998 999999999999999999999999999999998889999999984222223578999
Q ss_pred HHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecC---------CCCChhh
Q 027134 145 QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA---------PTTSPLS 215 (227)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~---------g~~~~~~ 215 (227)
++++ ++++++|+++ .|.++. ....| ++.++|++||||++|+|+++.. +.....+
T Consensus 81 ~~~~-~~~~~~~~~l--~D~~~~-~~~~~-------------~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 81 KAKA-KEHGYPFPYL--LDETQE-VAKAY-------------GAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHH-HHCCCCceEE--ECCchH-HHHHc-------------CCCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 9999 6889999988 444432 33444 7778999999999999998742 1123456
Q ss_pred HHHHHHHHhhh
Q 027134 216 IEKDIKKLLET 226 (227)
Q Consensus 216 l~~~i~~lL~~ 226 (227)
+.+.|+.+|+.
T Consensus 144 ~~~~i~~~l~~ 154 (171)
T cd02969 144 LRAALDALLAG 154 (171)
T ss_pred HHHHHHHHHcC
Confidence 99999988853
No 19
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.93 E-value=4.3e-25 Score=169.29 Aligned_cols=142 Identities=14% Similarity=0.136 Sum_probs=107.0
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCC-CCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~asw-C~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~ 142 (227)
.+|+.+|+|++.|.+|+.+++++++||++||+||++| ||+|+.+++.|++++++++ +++|++||.| +.+
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~~~ 88 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------LPF 88 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------CHH
Confidence 7899999999999999999999999999999999999 9999999999999999983 6999999988 567
Q ss_pred HHHHHHHhhCCCC-ccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC--ChhhHHHH
Q 027134 143 QIQEFACTRFKAE-FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--SPLSIEKD 219 (227)
Q Consensus 143 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~--~~~~l~~~ 219 (227)
..++|+ ++++++ ++++ .|..+......|+...... . ..++ ..|++||||++|+|++.+.+.. ....+++.
T Consensus 89 ~~~~f~-~~~~~~~~~~l--sD~~~~~~~~~~gv~~~~~--~-~~g~-~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~ 161 (167)
T PRK00522 89 AQKRFC-GAEGLENVITL--SDFRDHSFGKAYGVAIAEG--P-LKGL-LARAVFVLDENNKVVYSELVPEITNEPDYDAA 161 (167)
T ss_pred HHHHHH-HhCCCCCceEe--ecCCccHHHHHhCCeeccc--c-cCCc-eeeEEEEECCCCeEEEEEECCCcCCCCCHHHH
Confidence 788898 677887 6777 4533333455553221100 0 0011 2459999999999999986432 22235544
Q ss_pred HHH
Q 027134 220 IKK 222 (227)
Q Consensus 220 i~~ 222 (227)
|+.
T Consensus 162 l~~ 164 (167)
T PRK00522 162 LAA 164 (167)
T ss_pred HHH
Confidence 444
No 20
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.93 E-value=1.8e-25 Score=163.89 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=103.0
Q ss_pred ccCCeEEecCCC--CeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027134 68 SVHDFSVKDAKG--QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ 145 (227)
Q Consensus 68 ~~p~f~l~~~~G--~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~ 145 (227)
.+|+|++++.+| +.+++++++||+++|+||++|||+|+.++|.|+++.+++ ++.|++|+.|+ +.+.++
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~-------~~~~~~ 71 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKD-------NPENAL 71 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCC-------CHHHHH
Confidence 579999999999 889999999999999999999999999999999998775 49999999874 788999
Q ss_pred HHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhH
Q 027134 146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSI 216 (227)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l 216 (227)
+|+ ++++++|+.+. .|..+. ....| ++.++|++|+||++|+|+.++.|..+.+.+
T Consensus 72 ~~~-~~~~~~~~~~~-~D~~~~-~~~~~-------------~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 72 AWL-ARHGNPYAAVG-FDPDGR-VGIDL-------------GVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHH-HhcCCCCceEE-ECCcch-HHHhc-------------CCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 998 67788886431 343332 33334 778899999999999999999998876543
No 21
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.93 E-value=9.3e-25 Score=163.28 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=101.3
Q ss_pred CCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCC-CCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHH
Q 027134 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (227)
Q Consensus 65 ~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~asw-C~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~ 143 (227)
+|+.+|+|++.+.+|+.+++++++||++||+||++| ||+|+.+++.|++++++++ |+.|++||.| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 689999999999999999999999999999999998 6999999999999999984 6999999988 6777
Q ss_pred HHHHHHhhCCC-CccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 027134 144 IQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 144 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~ 211 (227)
.++|. ++++. .|+++ .|.........|..+.... + ...|++||||++|+|++.+.|..
T Consensus 72 ~~~~~-~~~~~~~~~~l--~D~~~~~~~~~~gv~~~~~------~-~~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 72 QKRWC-GAEGVDNVTTL--SDFRDHSFGKAYGVLIKDL------G-LLARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred HHHHH-HhcCCCCceEe--ecCcccHHHHHhCCeeccC------C-ccceEEEEEcCCCeEEEEEECCC
Confidence 78888 56675 68877 4443123444553221100 1 12689999999999999998754
No 22
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.92 E-value=1.1e-24 Score=163.92 Aligned_cols=130 Identities=18% Similarity=0.326 Sum_probs=105.1
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCC-CEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~g-k~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~ 141 (227)
++|+.+|+|++.+.+|+.+++++++| |+++|.|| ++||+.|+.+++.|++++++++++++++++||.| +.
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~ 73 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SP 73 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CH
Confidence 67999999999999999999999999 99999898 9999999999999999999999889999999987 67
Q ss_pred HHHHHHHHhhCCCCccceeeeccC-CCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 027134 142 EQIQEFACTRFKAEFPIFDKVDVN-GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~ 211 (227)
+.+++|+ ++++.+|+++ .|.+ .......|+..... .-...|++||||++|+|++++.|..
T Consensus 74 ~~~~~~~-~~~~~~~~~~--~D~~~~~~~~~~~g~~~~~-------~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 74 FSLRAWA-EENGLTFPLL--SDFWPHGEVAKAYGVFDED-------LGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHH-HhcCCCceEe--cCCCchhHHHHHhCCcccc-------CCCccceEEEECCCCEEEEEEecCC
Confidence 7899998 6779999988 3432 01133333211100 0012468999999999999998866
No 23
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.92 E-value=1.5e-24 Score=167.35 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=106.4
Q ss_pred CCCccCCeEEecCCC----CeeecCCCCCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCC
Q 027134 65 SKTSVHDFSVKDAKG----QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (227)
Q Consensus 65 ~g~~~p~f~l~~~~G----~~v~l~~~~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~ 139 (227)
+|+.+|+|++++.+| +.+++++++||++||+|| ++||+.|+.+++.|++++++|+++|+.|++||.|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 589999999999887 799999999999999999 8999999999999999999999989999999988
Q ss_pred CHHHHHHHHHhh------CCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCC-
Q 027134 140 DNEQIQEFACTR------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS- 212 (227)
Q Consensus 140 ~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~- 212 (227)
+.+..++|.... .+++|+++ .|..+. ..+.|+..... .-..+|++||||++|+|++++.+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~~~-~~~~~gv~~~~-------~~~~~p~~~lID~~G~I~~~~~~~~~~ 142 (173)
T cd03015 73 SHFSHLAWRNTPRKEGGLGKINFPLL--ADPKKK-ISRDYGVLDEE-------EGVALRGTFIIDPEGIIRHITVNDLPV 142 (173)
T ss_pred CHHHHHHHHHhhhhhCCccCcceeEE--ECCchh-HHHHhCCcccc-------CCceeeEEEEECCCCeEEEEEecCCCC
Confidence 445555555221 35788888 555443 34444221110 00147899999999999999876443
Q ss_pred ---hhhHHHHHHHH
Q 027134 213 ---PLSIEKDIKKL 223 (227)
Q Consensus 213 ---~~~l~~~i~~l 223 (227)
.+++.+.|+.+
T Consensus 143 ~~~~~~il~~l~~~ 156 (173)
T cd03015 143 GRSVDETLRVLDAL 156 (173)
T ss_pred CCCHHHHHHHHHHh
Confidence 33455555443
No 24
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.92 E-value=6.2e-25 Score=163.30 Aligned_cols=108 Identities=12% Similarity=0.165 Sum_probs=85.6
Q ss_pred CeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcC-------CcEEEEEeCCCCCCCCCCCHHHHHHHHHhhC
Q 027134 80 QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-------GLEILAFPCNQFGAQEPGDNEQIQEFACTRF 152 (227)
Q Consensus 80 ~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~-------~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~ 152 (227)
+.+++++++||+|+|+|||||||+|+.++|.|.++|++++++ +++||+||.|. +.+.+++|+ ++.
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-------~~~~~~~f~-~~~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-------SEQQQESFL-KDM 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-------CHHHHHHHH-HHC
Confidence 456788999999999999999999999999999999988753 69999999985 677889998 677
Q ss_pred CCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecC
Q 027134 153 KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA 208 (227)
Q Consensus 153 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~ 208 (227)
+++|+.+...+.........| ++.++|++||||++|+|+.+..
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y-------------~v~~iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQF-------------SVEELPTVVVLKPDGDVLAANA 130 (146)
T ss_pred CCCceeecccchHHHHHHHHc-------------CCCCCCEEEEECCCCcEEeeCh
Confidence 877755422222111223333 7888999999999999998743
No 25
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.92 E-value=7.2e-25 Score=160.52 Aligned_cols=113 Identities=20% Similarity=0.299 Sum_probs=95.1
Q ss_pred CCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccc
Q 027134 79 GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (227)
Q Consensus 79 G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (227)
|+.+++++++||++||+||++||++|+.++|.|++++++|+++++.+++|+.+.+.. .++.+.+++|+ ++++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~--~~~~~~~~~~~-~~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAF--ERDLANVKSAV-LRYGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccc--ccCHHHHHHHH-HHcCCCCCE
Confidence 578999999999999999999999999999999999999998899999998754221 24688999999 788999998
Q ss_pred eeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCC
Q 027134 159 FDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (227)
Q Consensus 159 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~ 210 (227)
+ .|.++. ....| ++.++|++||||++|+|++++.|.
T Consensus 90 ~--~D~~~~-~~~~~-------------~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 A--NDNDYA-TWRAY-------------GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred E--ECCchH-HHHHh-------------CCCcCCeEEEECCCCcEEEEEecC
Confidence 8 444332 23333 778899999999999999999875
No 26
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.92 E-value=2.2e-24 Score=168.29 Aligned_cols=129 Identities=18% Similarity=0.221 Sum_probs=100.4
Q ss_pred cCCCccCCeEEec-CCCC--eeecCCCCCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCC
Q 027134 64 QSKTSVHDFSVKD-AKGQ--DVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (227)
Q Consensus 64 ~~g~~~p~f~l~~-~~G~--~v~l~~~~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~ 139 (227)
.+|+.+|+|++.+ .+|+ .+++++++||++||+|| ++||++|+.+++.|++++++|+++|++|++||.|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 5699999999999 5787 68888999999999999 9999999999999999999999889999999998
Q ss_pred CHHHHHHHHHh---hCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCC
Q 027134 140 DNEQIQEFACT---RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (227)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~ 210 (227)
+.+..++|... ..+++||++ .|.++. ..+.|+.+.... + ...|++||||++|+|++.+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpll--sD~~~~-~a~~~gv~~~~~------g-~~~p~tfiID~~G~I~~~~~~~ 138 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPML--GDPTGV-LTRNFGVLIEEA------G-LADRGTFVIDPEGVIQAVEITD 138 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEE--ECCccH-HHHHhCCcccCC------C-ceeeEEEEECCCCEEEEEEEeC
Confidence 55566666522 136889888 454332 445553221100 1 1369999999999999987543
No 27
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.92 E-value=8.8e-24 Score=165.12 Aligned_cols=131 Identities=11% Similarity=0.177 Sum_probs=102.9
Q ss_pred ccCCCccCCeEEecCCCCeeecC--CCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCC
Q 027134 63 SQSKTSVHDFSVKDAKGQDVDLS--IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140 (227)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~~v~l~--~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~ 140 (227)
..+|+.+|+|+++|.+|+.++++ +++||+++|+||++|||+|+.++|.++++++++ ++.+++|+.| +
T Consensus 46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~--------~ 114 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG--------T 114 (189)
T ss_pred CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------C
Confidence 47899999999999999999995 579999999999999999999999999988653 4778999854 6
Q ss_pred HHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 027134 141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i 220 (227)
.+++++|+ ++++++++.+. .. ......| ++..+|++|+||++|+|+++... ...+.+++.+
T Consensus 115 ~~~~~~~~-~~~~~~~~~~~---~~-~~i~~~y-------------~v~~~P~~~lID~~G~I~~~g~~-~~~~~le~ll 175 (189)
T TIGR02661 115 PAEHRRFL-KDHELGGERYV---VS-AEIGMAF-------------QVGKIPYGVLLDQDGKIRAKGLT-NTREHLESLL 175 (189)
T ss_pred HHHHHHHH-HhcCCCcceee---ch-hHHHHhc-------------cCCccceEEEECCCCeEEEccCC-CCHHHHHHHH
Confidence 78899999 67788876552 11 2233334 77789999999999999987432 2344566555
Q ss_pred HHH
Q 027134 221 KKL 223 (227)
Q Consensus 221 ~~l 223 (227)
+++
T Consensus 176 ~~l 178 (189)
T TIGR02661 176 EAD 178 (189)
T ss_pred HHH
Confidence 543
No 28
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.91 E-value=9e-24 Score=151.81 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=92.4
Q ss_pred CCeEEecCCCCeeecCCCC-CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027134 70 HDFSVKDAKGQDVDLSIYK-GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (227)
Q Consensus 70 p~f~l~~~~G~~v~l~~~~-gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~ 148 (227)
|+|++++.+|+.+++++++ ||++||+||++||++|+.++|.++++++++++ ++.++.|+ |. +.+++++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~~-------~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-DG-------EKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-CC-------CHHHHHHHH
Confidence 7999999999999999997 99999999999999999999999999998865 48888886 42 678899998
Q ss_pred HhhCCCC-ccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEec
Q 027134 149 CTRFKAE-FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY 207 (227)
Q Consensus 149 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~ 207 (227)
+++++. +|.+. + ......| ++..+|++|+||++|+|+++.
T Consensus 72 -~~~~~~~~p~~~--~---~~~~~~~-------------~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 -KKHGLEAFPYVL--S---AELGMAY-------------QVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred -HHhCCCCCcEEe--c---HHHHhhc-------------CCCCcCeEEEECCCCeEEecc
Confidence 677874 88762 1 1133344 778899999999999999874
No 29
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=184.59 Aligned_cols=137 Identities=20% Similarity=0.203 Sum_probs=111.0
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~ 143 (227)
..++.+|+|++.|.+|+.++++ +||+|||+|||+||++|+.++|.|++++++++.++++||+|+++... ...+.++
T Consensus 33 ~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~--~e~~~~~ 108 (521)
T PRK14018 33 TVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFL--HEKKDGD 108 (521)
T ss_pred cccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccc--ccccHHH
Confidence 6778999999999999999998 89999999999999999999999999999998778999999985321 1224567
Q ss_pred HHHHHHhhCCC-CccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHH
Q 027134 144 IQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIK 221 (227)
Q Consensus 144 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~ 221 (227)
.++++ +..+. ++|++ .|.++. ....| ++.++|+++|||++|+|+.++.|..+.+++++.|+
T Consensus 109 ~~~~~-~~~~y~~~pV~--~D~~~~-lak~f-------------gV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 109 FQKWY-AGLDYPKLPVL--TDNGGT-LAQSL-------------NISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHH-HhCCCccccee--ccccHH-HHHHc-------------CCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 77777 44343 45666 343332 23333 88899999999999999999999999888888777
No 30
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.91 E-value=1.9e-23 Score=164.71 Aligned_cols=142 Identities=23% Similarity=0.348 Sum_probs=107.2
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEE-EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv-~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~ 142 (227)
.+|+.+|+|++.+.+| .+++++++||++|| +||++|||.|+.+++.|++++++|+++|++|++||+| +.+
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~~ 73 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SIY 73 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 6799999999999988 69999999998776 5789999999999999999999999999999999998 455
Q ss_pred HHHHHHH---hhCC--CCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEec----CCCCCh
Q 027134 143 QIQEFAC---TRFK--AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY----APTTSP 213 (227)
Q Consensus 143 ~~~~~~~---~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~----~g~~~~ 213 (227)
..++|++ ++++ ++||++ .|.++. ....|+.+... . + ..+|++||||++|+|++.. .+..+.
T Consensus 74 ~~~~w~~~~~~~~g~~~~fPll--~D~~~~-ia~~ygv~~~~----~--g-~~~p~~fiId~~G~I~~~~~~~~~~gr~~ 143 (202)
T PRK13190 74 SHIAWLRDIEERFGIKIPFPVI--ADIDKE-LAREYNLIDEN----S--G-ATVRGVFIIDPNQIVRWMIYYPAETGRNI 143 (202)
T ss_pred HHHHHHHhHHHhcCCCceEEEE--ECCChH-HHHHcCCcccc----C--C-cEEeEEEEECCCCEEEEEEEeCCCCCCCH
Confidence 4444431 3455 579988 555543 44455332111 0 1 2479999999999999875 223356
Q ss_pred hhHHHHHHHHh
Q 027134 214 LSIEKDIKKLL 224 (227)
Q Consensus 214 ~~l~~~i~~lL 224 (227)
+++.+.|+.+.
T Consensus 144 ~ellr~l~~l~ 154 (202)
T PRK13190 144 DEIIRITKALQ 154 (202)
T ss_pred HHHHHHHHHhh
Confidence 67777777664
No 31
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.91 E-value=7.3e-24 Score=158.04 Aligned_cols=137 Identities=19% Similarity=0.262 Sum_probs=104.0
Q ss_pred ccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCc-chHhHHHHHHHHHHHhcCC---cEEEEEeCCCCCCCCCCCHHH
Q 027134 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGL-TNSNYTELSQLYDKYKNQG---LEILAFPCNQFGAQEPGDNEQ 143 (227)
Q Consensus 68 ~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~-C~~~~~~l~~l~~~~~~~~---~~vl~Vs~D~~~~~~~~~~~~ 143 (227)
.+|+|++.|.+|+.+++++++||++||.||++||++ |..+++.|+++++++++++ +++++|+.|. ..++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence 379999999999999999999999999999999997 9999999999999998864 9999999982 3357789
Q ss_pred HHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcC-CCCCCCccccceeEEEECCCCcEEEecCC
Q 027134 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-GGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (227)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~i~~~P~~~lid~~G~I~~~~~g 209 (227)
+++|+ ++++.+|+++.+.+.........|+...... .+..++++.+.|.+||||++|+|++++.|
T Consensus 77 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 77 LKAYA-KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHH-HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 99999 6778899988432211112233332221111 11112356678999999999999998753
No 32
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=1.6e-23 Score=198.87 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=121.3
Q ss_pred ccCCCccCCeEEec--CCCCeeec-CCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCC
Q 027134 63 SQSKTSVHDFSVKD--AKGQDVDL-SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (227)
Q Consensus 63 ~~~g~~~p~f~l~~--~~G~~v~l-~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~ 139 (227)
...|..+|+|+..+ .+|+.+++ ++++||+|||+|||+||++|+.++|.|++++++|++++++|++|+.+.+.. ..
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~--~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDN--EK 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccc--cc
Confidence 36799999999876 68999998 689999999999999999999999999999999999899999998654321 23
Q ss_pred CHHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 027134 140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKD 219 (227)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (227)
+.+++++++ .+++++||++ .|.++. ....| ++.++|+++|||++|+|+++..|....+.+++.
T Consensus 469 ~~~~~~~~~-~~~~i~~pvv--~D~~~~-~~~~~-------------~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~ 531 (1057)
T PLN02919 469 DLEAIRNAV-LRYNISHPVV--NDGDMY-LWREL-------------GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDL 531 (1057)
T ss_pred cHHHHHHHH-HHhCCCccEE--ECCchH-HHHhc-------------CCCccceEEEECCCCeEEEEEecccCHHHHHHH
Confidence 578889998 6889999987 444332 22333 788999999999999999999998888889999
Q ss_pred HHHHhh
Q 027134 220 IKKLLE 225 (227)
Q Consensus 220 i~~lL~ 225 (227)
|+++|.
T Consensus 532 l~~~l~ 537 (1057)
T PLN02919 532 VEAALQ 537 (1057)
T ss_pred HHHHHH
Confidence 988764
No 33
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.90 E-value=1.9e-23 Score=160.56 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=102.2
Q ss_pred cCCCccCCeEEecC-----C-----CCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEE------EE
Q 027134 64 QSKTSVHDFSVKDA-----K-----GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEI------LA 127 (227)
Q Consensus 64 ~~g~~~p~f~l~~~-----~-----G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~v------l~ 127 (227)
..|.++|..++.|- + .+.++.++++||++||+|||+||++|+.++|.|.++ +++|+.+ ++
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~~ 99 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTTI 99 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceEE
Confidence 66777777776654 3 346677889999999999999999999999999999 4456888 99
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHhhCCCCcc---ceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeE-EEECCCCcE
Q 027134 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFP---IFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSK-FLVDKEGNV 203 (227)
Q Consensus 128 Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~-~lid~~G~I 203 (227)
||.|+ ...+...-++.|+ ++.+..|| ++ .|.++. ....| ++.++|++ ||||++|+|
T Consensus 100 IN~dd---~~~~~~~fVk~fi-e~~~~~~P~~~vl--lD~~g~-v~~~~-------------gv~~~P~T~fVIDk~GkV 159 (184)
T TIGR01626 100 INADD---AIVGTGMFVKSSA-KKGKKENPWSQVV--LDDKGA-VKNAW-------------QLNSEDSAIIVLDKTGKV 159 (184)
T ss_pred EECcc---chhhHHHHHHHHH-HHhcccCCcceEE--ECCcch-HHHhc-------------CCCCCCceEEEECCCCcE
Confidence 99885 1112334456666 56677888 55 455443 33444 78889888 899999999
Q ss_pred EEecCCCCChhhHHHHHHHHh
Q 027134 204 VERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 204 ~~~~~g~~~~~~l~~~i~~lL 224 (227)
++++.|..+.+++++ +..++
T Consensus 160 v~~~~G~l~~ee~e~-~~~li 179 (184)
T TIGR01626 160 KFVKEGALSDSDIQT-VISLV 179 (184)
T ss_pred EEEEeCCCCHHHHHH-HHHHH
Confidence 999999988877766 44333
No 34
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.90 E-value=8e-23 Score=152.00 Aligned_cols=129 Identities=19% Similarity=0.333 Sum_probs=103.8
Q ss_pred ccCCeEEecCCCCeeecCCCCCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHH
Q 027134 68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE 146 (227)
Q Consensus 68 ~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~ 146 (227)
.+|+|+++|.+|+.+++++++||++||+|| ++||+.|+.+++.|++++++++++++.+++|+.| +.+.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 379999999999999999999999999999 7899999999999999999998888999999987 6788889
Q ss_pred HHHhhC-CCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCC
Q 027134 147 FACTRF-KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS 212 (227)
Q Consensus 147 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~ 212 (227)
|+ +++ +.+|+++ .|.++. ....|+...... .+ +....|++||||++|+|++++.|...
T Consensus 73 ~~-~~~~~~~~~~l--~D~~~~-~~~~~g~~~~~~---~~-~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 73 WA-EKEGGLNFPLL--SDPDGE-FAKAYGVLIEKS---AG-GGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HH-hcccCCCceEE--ECCChH-HHHHcCCccccc---cc-cCceeEEEEEECCCCcEEEEEecCCC
Confidence 98 677 8899988 454432 333332221110 01 22346899999999999999998765
No 35
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.89 E-value=1.1e-22 Score=161.37 Aligned_cols=143 Identities=16% Similarity=0.214 Sum_probs=107.7
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEE-EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~v-lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~ 142 (227)
..|+.+|+|++.+.+|+...+++++||++ |++||++|||.|..+++.+++++++|+++|++|++||+| +.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~ 74 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF 74 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 57999999999999999888899999985 578889999999999999999999999999999999998 444
Q ss_pred H---HHHHHHh--hCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC----Ch
Q 027134 143 Q---IQEFACT--RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----SP 213 (227)
Q Consensus 143 ~---~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~----~~ 213 (227)
. |.+++++ ..+++||++ .|.++. ....|+.+.... +....|++||||++|+|++.+.... +.
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil--~D~~~~-va~~yg~~~~~~------~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~ 145 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVI--ADDLGK-VSNQLGMIHPGK------GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNV 145 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEE--ECCCch-HHHHcCCCccCC------CCceeeEEEEECCCCEEEEEEEcCCCCCCCH
Confidence 3 4445532 347889998 555443 455554322110 1235799999999999999864221 34
Q ss_pred hhHHHHHHHH
Q 027134 214 LSIEKDIKKL 223 (227)
Q Consensus 214 ~~l~~~i~~l 223 (227)
+++.+.|+.+
T Consensus 146 ~eilr~l~~l 155 (215)
T PRK13599 146 DEILRALKAL 155 (215)
T ss_pred HHHHHHHHHh
Confidence 4566666554
No 36
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.89 E-value=1.8e-22 Score=159.40 Aligned_cols=142 Identities=15% Similarity=0.238 Sum_probs=103.5
Q ss_pred CCCccCCeEEecCCCCeeecCCCCC-CEE-EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHH
Q 027134 65 SKTSVHDFSVKDAKGQDVDLSIYKG-KLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (227)
Q Consensus 65 ~g~~~p~f~l~~~~G~~v~l~~~~g-k~v-lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~ 142 (227)
+|+.+|+|++.+.+|. +++++++| |++ |++||++|||.|..+++.|++++++|+++|++|++||+| +.+
T Consensus 1 vG~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 4889999999999984 89999988 765 457889999999999999999999999999999999998 455
Q ss_pred HHHHHHHh-----hCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC----Ch
Q 027134 143 QIQEFACT-----RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----SP 213 (227)
Q Consensus 143 ~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~----~~ 213 (227)
..++|... +.+++||++ .|.++. ....|+...... + .-...|++||||++|+|++.+.+.. +.
T Consensus 72 ~~~~~~~~i~~~~~~~~~fpil--~D~~~~-ia~~yg~~~~~~----~-~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~ 143 (203)
T cd03016 72 SHIKWIEDIEEYTGVEIPFPII--ADPDRE-VAKLLGMIDPDA----G-STLTVRAVFIIDPDKKIRLILYYPATTGRNF 143 (203)
T ss_pred HHHHHHhhHHHhcCCCCceeEE--ECchHH-HHHHcCCccccC----C-CCceeeEEEEECCCCeEEEEEecCCCCCCCH
Confidence 55555411 158899988 454433 344443321100 1 1123578999999999999876533 24
Q ss_pred hhHHHHHHHH
Q 027134 214 LSIEKDIKKL 223 (227)
Q Consensus 214 ~~l~~~i~~l 223 (227)
+++.+.|+++
T Consensus 144 ~ell~~l~~l 153 (203)
T cd03016 144 DEILRVVDAL 153 (203)
T ss_pred HHHHHHHHHH
Confidence 4566666554
No 37
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.89 E-value=1.8e-22 Score=156.79 Aligned_cols=141 Identities=12% Similarity=0.244 Sum_probs=107.0
Q ss_pred cCCCccCCeEEecC-CC--CeeecCCCCCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCC
Q 027134 64 QSKTSVHDFSVKDA-KG--QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (227)
Q Consensus 64 ~~g~~~p~f~l~~~-~G--~~v~l~~~~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~ 139 (227)
.+|+.+|+|+.... +| ..+++++++||++||+|| ++|||.|..+++.|++++++|+++|++|++||.|
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D-------- 74 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC--------
Confidence 67999999998873 44 467788999999999999 9999999999999999999999999999999998
Q ss_pred CHHHHHHHHHhh---CCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC----C
Q 027134 140 DNEQIQEFACTR---FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----S 212 (227)
Q Consensus 140 ~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~----~ 212 (227)
+....++|.... .+++||++ .|.++. ..+.|+.+.... ++ ..|++||||++|+|++.+.... +
T Consensus 75 ~~~~~~a~~~~~~~~~~l~fpll--sD~~~~-ia~~ygv~~~~~------g~-~~r~tfIID~~G~I~~~~~~~~~~~~~ 144 (187)
T PRK10382 75 THFTHKAWHSSSETIAKIKYAMI--GDPTGA-LTRNFDNMREDE------GL-ADRATFVVDPQGIIQAIEVTAEGIGRD 144 (187)
T ss_pred CHHHHHHHHHhhccccCCceeEE--EcCchH-HHHHcCCCcccC------Cc-eeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 778888887332 47899999 454333 555554321110 11 2499999999999999865432 3
Q ss_pred hhhHHHHHHH
Q 027134 213 PLSIEKDIKK 222 (227)
Q Consensus 213 ~~~l~~~i~~ 222 (227)
.+++.+.|+.
T Consensus 145 ~~eil~~l~a 154 (187)
T PRK10382 145 ASDLLRKIKA 154 (187)
T ss_pred HHHHHHHHHh
Confidence 4445555544
No 38
>PRK15000 peroxidase; Provisional
Probab=99.89 E-value=3.1e-22 Score=157.41 Aligned_cols=141 Identities=12% Similarity=0.198 Sum_probs=102.9
Q ss_pred cCCCccCCeEEecCC--CC---eeecCCC-CCCEEEEEEecC-CCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCC
Q 027134 64 QSKTSVHDFSVKDAK--GQ---DVDLSIY-KGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ 136 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~--G~---~v~l~~~-~gk~vlv~F~as-wC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~ 136 (227)
.+|+.+|+|++.+.. |+ .++++++ +||++||+||+. ||+.|+.+++.|++++++|+++|++|++||.|
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D----- 77 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD----- 77 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 579999999999864 45 3556666 899999999975 99999999999999999999999999999998
Q ss_pred CCCCHHHHHHHH---HhhCC---CCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCC
Q 027134 137 EPGDNEQIQEFA---CTRFK---AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (227)
Q Consensus 137 ~~~~~~~~~~~~---~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~ 210 (227)
+....+.|. .++.+ ++||++ .|.++. ..+.|+.+.... + ...|++||||++|+|++.+.+.
T Consensus 78 ---~~~~~~~w~~~~~~~~g~~~i~fpll--sD~~~~-ia~~ygv~~~~~------g-~~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 78 ---SEFVHNAWRNTPVDKGGIGPVKYAMV--ADVKRE-IQKAYGIEHPDE------G-VALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred ---CHHHHHHHHhhHHHhCCccccCceEE--ECCCcH-HHHHcCCccCCC------C-cEEeEEEEECCCCEEEEEEecC
Confidence 455444443 12333 689998 555443 455553321110 1 1489999999999999987764
Q ss_pred CC----hhhHHHHHHH
Q 027134 211 TS----PLSIEKDIKK 222 (227)
Q Consensus 211 ~~----~~~l~~~i~~ 222 (227)
.+ .+++.+.|+.
T Consensus 145 ~~~gr~~~eilr~l~a 160 (200)
T PRK15000 145 LPLGRNIDEMLRMVDA 160 (200)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 43 3345555544
No 39
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.89 E-value=1.4e-22 Score=152.13 Aligned_cols=129 Identities=19% Similarity=0.275 Sum_probs=97.5
Q ss_pred ccCCeEEecCCCCeeecCCCC-CCEEEEEE-ecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHH
Q 027134 68 SVHDFSVKDAKGQDVDLSIYK-GKLLLIVN-VASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ 145 (227)
Q Consensus 68 ~~p~f~l~~~~G~~v~l~~~~-gk~vlv~F-~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~ 145 (227)
.+|+|+++|.+|+.++++++. +|+++|.| |++|||+|+.+++.|++++++++++|+.+++|+.| +.+...
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 379999999999999999975 46555554 69999999999999999999999889999999988 556666
Q ss_pred HHHHhhCCCCccceeeeccCCCCchhhHHHhhhc-----------------CCCCCCCccccceeEEEECCCCcEEEecC
Q 027134 146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS-----------------KGGLFGDSIKWNFSKFLVDKEGNVVERYA 208 (227)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----------------~~~~~~~~i~~~P~~~lid~~G~I~~~~~ 208 (227)
+|. ++++++||++ .|.+.. ....|+..... .++. ++....+|++||||++|+|++.+.
T Consensus 73 ~~~-~~~~~~~p~~--~D~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 73 AFD-KGKFLPFPVY--ADPDRK-LYRALGLVRSLPWSNTPRALWKNAAIGFRGND-EGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred HHH-HhcCCCCeEE--ECCchh-HHHHcCceecCcHHHHHHHHhhCcccccccCC-CCcccccceEEEECCCCeEEEEec
Confidence 787 6779999998 454433 33333221100 0011 123446899999999999999987
Q ss_pred C
Q 027134 209 P 209 (227)
Q Consensus 209 g 209 (227)
|
T Consensus 148 ~ 148 (149)
T cd02970 148 D 148 (149)
T ss_pred C
Confidence 6
No 40
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.88 E-value=2e-22 Score=154.00 Aligned_cols=121 Identities=17% Similarity=0.277 Sum_probs=96.5
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ 143 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~ 143 (227)
.+....|+|++. +|+.+++++++ ||+||++|||+|++++|.|++++++| +++|++|++|. .
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~--- 110 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------Q--- 110 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------C---
Confidence 455578888885 99999999997 77899999999999999999999997 49999999983 1
Q ss_pred HHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCc--cccceeEEEECCCCcEE-EecCCCCChhhHHHHH
Q 027134 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS--IKWNFSKFLVDKEGNVV-ERYAPTTSPLSIEKDI 220 (227)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--i~~~P~~~lid~~G~I~-~~~~g~~~~~~l~~~i 220 (227)
....||++ .|.........| + ..++|++||||++|+++ ..+.|..+.+++++.|
T Consensus 111 --------~~~~fPv~--~dd~~~~~~~~~-------------g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I 167 (181)
T PRK13728 111 --------GDTAFPEA--LPAPPDVMQTFF-------------PNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARM 167 (181)
T ss_pred --------CCCCCceE--ecCchhHHHHHh-------------CCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHH
Confidence 13588887 332222222233 3 25799999999999997 4799999999999999
Q ss_pred HHHhhh
Q 027134 221 KKLLET 226 (227)
Q Consensus 221 ~~lL~~ 226 (227)
+++++.
T Consensus 168 ~~ll~~ 173 (181)
T PRK13728 168 DTVLQM 173 (181)
T ss_pred HHHHhh
Confidence 998853
No 41
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.88 E-value=2.6e-22 Score=146.13 Aligned_cols=121 Identities=20% Similarity=0.305 Sum_probs=102.8
Q ss_pred CCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 027134 70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC 149 (227)
Q Consensus 70 p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~ 149 (227)
|+|++++.+|+.+++++++||+++|+||++||++|+.++|.|++++++ +.+++|+.|. ++.+++++++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~- 68 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFM- 68 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHH-
Confidence 799999999999999999999999999999999999999999999876 6788898873 3688999998
Q ss_pred hhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 027134 150 TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKD 219 (227)
Q Consensus 150 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (227)
++++++|+++ .|.++. ....| ++.++|+++|+|++| |++++.|..+++.+.+.
T Consensus 69 ~~~~~~~~~~--~d~~~~-~~~~~-------------~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 69 QKKGYGFPVI--NDPDGV-ISARW-------------GVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred HHcCCCccEE--ECCCcH-HHHhC-------------CCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 6778999987 443332 33333 788899999999999 99999999988887654
No 42
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.88 E-value=4.8e-22 Score=157.85 Aligned_cols=143 Identities=17% Similarity=0.250 Sum_probs=104.5
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEE-EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE 142 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv-~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~ 142 (227)
.+|+.+|+|++.+.+|+....++++||++|| +||++||+.|..+++.|++++++|+++|++|++||+| +..
T Consensus 8 ~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s~~ 79 (215)
T PRK13191 8 LIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------SNI 79 (215)
T ss_pred cCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------CHH
Confidence 6899999999999999744335589997776 7789999999999999999999999999999999998 444
Q ss_pred H---HHHHHHh--hCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC----Ch
Q 027134 143 Q---IQEFACT--RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----SP 213 (227)
Q Consensus 143 ~---~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~----~~ 213 (227)
. |.+++++ ..+++||++ .|.++. ....|+.+.... .....|++||||++|+|++...+.. +.
T Consensus 80 ~h~aw~~~~~~~~~~~i~fPll--sD~~~~-ia~~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~ 150 (215)
T PRK13191 80 SHIEWVMWIEKNLKVEVPFPII--ADPMGN-VAKRLGMIHAES------STATVRAVFIVDDKGTVRLILYYPMEIGRNI 150 (215)
T ss_pred HHHHHHhhHHHhcCCCCceEEE--ECCchH-HHHHcCCccccc------CCceeEEEEEECCCCEEEEEEecCCCCCCCH
Confidence 4 4444432 246889998 555443 455554332110 1224799999999999999865433 34
Q ss_pred hhHHHHHHHH
Q 027134 214 LSIEKDIKKL 223 (227)
Q Consensus 214 ~~l~~~i~~l 223 (227)
+++.+.|+.+
T Consensus 151 ~eilr~l~al 160 (215)
T PRK13191 151 DEILRAIRAL 160 (215)
T ss_pred HHHHHHHHHh
Confidence 4555555543
No 43
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.88 E-value=1.2e-22 Score=149.93 Aligned_cols=107 Identities=19% Similarity=0.255 Sum_probs=84.7
Q ss_pred CeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcC--CcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCcc
Q 027134 80 QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (227)
Q Consensus 80 ~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (227)
+.+++++++||++||+||++||++|+.++|.|++++++++++ +++|++|++|. +.+.+++|+ ++++ .|.
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~-~~~~-~~~ 78 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYF-SEMP-PWL 78 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHH-hcCC-CeE
Confidence 599999999999999999999999999999999999999875 79999999985 678888998 5666 544
Q ss_pred ceeeeccC-CCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecC
Q 027134 158 IFDKVDVN-GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA 208 (227)
Q Consensus 158 ~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~ 208 (227)
.+...+.. .......| ++.++|+++|||++|+|+.+..
T Consensus 79 ~~~~~d~~~~~~~~~~~-------------~v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 79 AVPFEDEELRELLEKQF-------------KVEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred eeccCcHHHHHHHHHHc-------------CCCCCCEEEEECCCCCEEchhH
Confidence 43211100 11122223 7888999999999999997754
No 44
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.88 E-value=1.1e-21 Score=158.72 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=105.4
Q ss_pred ccCCCccCCeEEec-CCCC--eeecCCC-CCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCC
Q 027134 63 SQSKTSVHDFSVKD-AKGQ--DVDLSIY-KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE 137 (227)
Q Consensus 63 ~~~g~~~p~f~l~~-~~G~--~v~l~~~-~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~ 137 (227)
..+|+.+|+|++.+ .+|+ .++++++ +||++||+|| ++|||+|+.|++.+++++++|+++|++|++||+|
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D------ 141 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD------ 141 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence 47999999999988 5664 6899998 8999888888 8999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHH---h---hCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 027134 138 PGDNEQIQEFAC---T---RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 138 ~~~~~~~~~~~~---~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~ 211 (227)
+....++|.. + ..+++||++ .|.++. ..+.|+.+.. . + ...|++||||++|+|++.+....
T Consensus 142 --s~~~h~aw~~~~~~~~g~~~l~fPlL--sD~~~~-iakayGv~~~-----~--g-~a~R~tFIID~dG~I~~~~~~~~ 208 (261)
T PTZ00137 142 --SPFSHKAWKELDVRQGGVSPLKFPLF--SDISRE-VSKSFGLLRD-----E--G-FSHRASVLVDKAGVVKHVAVYDL 208 (261)
T ss_pred --CHHHHHHHHhhhhhhccccCcceEEE--EcCChH-HHHHcCCCCc-----C--C-ceecEEEEECCCCEEEEEEEeCC
Confidence 4555555542 1 147889998 454433 4555533211 0 1 24799999999999999864322
Q ss_pred ----ChhhHHHHHHHH
Q 027134 212 ----SPLSIEKDIKKL 223 (227)
Q Consensus 212 ----~~~~l~~~i~~l 223 (227)
+.+++.+.|+.+
T Consensus 209 ~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 209 GLGRSVDETLRLFDAV 224 (261)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 344455555543
No 45
>PRK13189 peroxiredoxin; Provisional
Probab=99.87 E-value=2.5e-21 Score=154.58 Aligned_cols=143 Identities=20% Similarity=0.332 Sum_probs=104.6
Q ss_pred cCCCccCCeEEecCCCCeeecCC-CCCCEEEE-EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSI-YKGKLLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~-~~gk~vlv-~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~ 141 (227)
.+|+.+|+|++.+.+|+ +++++ ++||+++| +||++|||.|..+++.|++++++|+++|++|++||+| +.
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------~~ 80 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------QV 80 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CH
Confidence 68999999999999996 67776 59996655 6779999999999999999999999999999999998 45
Q ss_pred HHHHHHHH---hh--CCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC----C
Q 027134 142 EQIQEFAC---TR--FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----S 212 (227)
Q Consensus 142 ~~~~~~~~---~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~----~ 212 (227)
...++|.. ++ .+++||++ .|.++. ..+.|+.+.... + + ...|++||||++|+|+....+.. +
T Consensus 81 ~~h~aw~~~~~~~~g~~i~fPll--sD~~~~-ia~~ygv~~~~~----~-~-~~~r~tfIID~~G~Ir~~~~~~~~~gr~ 151 (222)
T PRK13189 81 FSHIKWVEWIKEKLGVEIEFPII--ADDRGE-IAKKLGMISPGK----G-T-NTVRAVFIIDPKGIIRAILYYPQEVGRN 151 (222)
T ss_pred HHHHHHHHhHHHhcCcCcceeEE--EcCccH-HHHHhCCCcccc----C-C-CceeEEEEECCCCeEEEEEecCCCCCCC
Confidence 55445542 22 25789988 454443 455554321110 0 1 15799999999999998865433 3
Q ss_pred hhhHHHHHHHHh
Q 027134 213 PLSIEKDIKKLL 224 (227)
Q Consensus 213 ~~~l~~~i~~lL 224 (227)
.+++.+.|+.+.
T Consensus 152 ~~eilr~l~alq 163 (222)
T PRK13189 152 MDEILRLVKALQ 163 (222)
T ss_pred HHHHHHHHHHhh
Confidence 455666666553
No 46
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.87 E-value=2.2e-21 Score=138.34 Aligned_cols=116 Identities=29% Similarity=0.546 Sum_probs=99.3
Q ss_pred CeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 027134 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACT 150 (227)
Q Consensus 71 ~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~ 150 (227)
+|++.+.+|+.+++++++||+++|.||++||+.|+..++.|.++++++++.++.+++|++|. ++.+.+++++ +
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~-~ 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFL-K 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHH-H
Confidence 57899999999999999999999999999999999999999999999987779999999983 1489999999 6
Q ss_pred hCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCC
Q 027134 151 RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (227)
Q Consensus 151 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g 209 (227)
+++.+|+++ .|.. ....+.| ++.++|+++|+|++|+|++++.|
T Consensus 74 ~~~~~~~~~--~~~~-~~~~~~~-------------~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 74 KYGITFPVL--LDPD-GELAKAY-------------GVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred HcCCCcceE--EcCc-chHHHhc-------------CcCccceEEEECCCCcEEEEecC
Confidence 778888887 3432 2244444 77789999999999999998765
No 47
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.86 E-value=4.3e-22 Score=146.71 Aligned_cols=113 Identities=21% Similarity=0.330 Sum_probs=86.2
Q ss_pred EecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcC--CcEEEEEeCCCCCCCCCCCHHHHHHHHHhh
Q 027134 74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTR 151 (227)
Q Consensus 74 l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~ 151 (227)
|.|.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ +++|++|++|. +.+.+++++ ++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~-~~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYF-SK 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHH-Hc
Confidence 568999999999999999999999999999999999999999999864 69999999985 667888887 33
Q ss_pred CCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecC
Q 027134 152 FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA 208 (227)
Q Consensus 152 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~ 208 (227)
.+ +..+...+ .+....+.+.+ ++.++|+++|||++|+|+.+..
T Consensus 75 ~~--~~~~~~~~--~~~~~~~~~~~----------~v~~~P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 75 MP--WLAVPFSD--RERRSRLNRTF----------KIEGIPTLIILDADGEVVTTDA 117 (131)
T ss_pred CC--eeEcccCC--HHHHHHHHHHc----------CCCCCCEEEEECCCCCEEcccH
Confidence 32 21111011 01011222222 7888999999999999987743
No 48
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.86 E-value=3.7e-21 Score=151.53 Aligned_cols=141 Identities=15% Similarity=0.211 Sum_probs=102.9
Q ss_pred cCCCccCCeEEec----CCCCeeecCCCCCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCC
Q 027134 64 QSKTSVHDFSVKD----AKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP 138 (227)
Q Consensus 64 ~~g~~~p~f~l~~----~~G~~v~l~~~~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~ 138 (227)
.+|+.+|+|++.+ .+|+.+++++++||++||+|| ++||+.|+.+++.|.+++++|+++|++|++||.|
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d------- 79 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD------- 79 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC-------
Confidence 6899999999765 466899999999999999999 5799999999999999999999999999999998
Q ss_pred CCHHHHHHHHH-hh-----CCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCC
Q 027134 139 GDNEQIQEFAC-TR-----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS 212 (227)
Q Consensus 139 ~~~~~~~~~~~-~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~ 212 (227)
+.....+|.. .+ .+++||++ .|.++. +.+.|+.+.... ++ ..|++||||++|+|++...+...
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~fpll--~D~~~~-ia~~ygv~~~~~------g~-~~r~~fiID~~G~i~~~~~~~~~ 148 (199)
T PTZ00253 80 -SEYAHLQWTLQERKKGGLGTMAIPML--ADKTKS-IARSYGVLEEEQ------GV-AYRGLFIIDPKGMLRQITVNDMP 148 (199)
T ss_pred -CHHHHHHHHhChHhhCCccccccceE--ECcHhH-HHHHcCCcccCC------Cc-eEEEEEEECCCCEEEEEEecCCC
Confidence 3443344321 11 14789998 454433 455554332111 11 36899999999999998776443
Q ss_pred hh-hHHHHHHH
Q 027134 213 PL-SIEKDIKK 222 (227)
Q Consensus 213 ~~-~l~~~i~~ 222 (227)
.. .+++.++.
T Consensus 149 ~~r~~~e~l~~ 159 (199)
T PTZ00253 149 VGRNVEEVLRL 159 (199)
T ss_pred CCCCHHHHHHH
Confidence 22 34444433
No 49
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.85 E-value=5.9e-21 Score=147.11 Aligned_cols=140 Identities=19% Similarity=0.293 Sum_probs=107.9
Q ss_pred CCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCC-cchHhHHHHHHHHHHHhcC--CcEEEEEeCCCCCCCCCCCH
Q 027134 65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDN 141 (227)
Q Consensus 65 ~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~-~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~D~~~~~~~~~~ 141 (227)
.....|+|+|.|.+|+.+++++++||++||+|.++.|| .|+..+..|.+++++++++ ++++++||+| |+.|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence 45567999999999999999999999999999999999 7999999999999999864 6999999999 889999
Q ss_pred HHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcC---CCCCCCccccceeEEEECCCCcEEEecCC
Q 027134 142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK---GGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (227)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~i~~~P~~~lid~~G~I~~~~~g 209 (227)
+.+++|+ +.++.++..|...........+.|+...... .+..++.+.|...+|||||+|+|+..+.+
T Consensus 104 ~~L~~Y~-~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYA-KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHH-HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHH-HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 9999999 6788888777533322222333333322211 12233568899999999999999998754
No 50
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.84 E-value=4.3e-21 Score=133.43 Aligned_cols=94 Identities=26% Similarity=0.361 Sum_probs=72.8
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHh-cCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
||+++|+||++||++|+.++|.|.+++++|+ +.+++||+||+|. +.+++++++ ++.+.++..+...+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~-------~~~~~~~~~-~~~~~~~~~~~~~~~~-- 70 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE-------DEEEWKKFL-KKNNFPWYNVPFDDDN-- 70 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS-------SHHHHHHHH-HTCTTSSEEEETTTHH--
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC-------CHHHHHHHH-HhcCCCceEEeeCcch--
Confidence 7999999999999999999999999999999 5569999999995 789999999 5656666654211111
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcE
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV 203 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I 203 (227)
...+.+.+ ++.++|+++|+|++|+|
T Consensus 71 -~~~l~~~~----------~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 71 -NSELLKKY----------GINGIPTLVLLDPDGKI 95 (95)
T ss_dssp -HHHHHHHT----------T-TSSSEEEEEETTSBE
T ss_pred -HHHHHHHC----------CCCcCCEEEEECCCCCC
Confidence 22333333 88889999999999987
No 51
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.82 E-value=2.2e-19 Score=141.62 Aligned_cols=151 Identities=22% Similarity=0.346 Sum_probs=120.9
Q ss_pred CeEEecCCCCeeecCCCCCCEEEEEEecCCCC-cchHhHHHHHHHHHHHh---cCCcEEEEEeCCCCCCCCCCCHHHHHH
Q 027134 71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYK---NQGLEILAFPCNQFGAQEPGDNEQIQE 146 (227)
Q Consensus 71 ~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~-~C~~~~~~l~~l~~~~~---~~~~~vl~Vs~D~~~~~~~~~~~~~~~ 146 (227)
+|+++|.+|+.+++.+++||++||+|.+|.|| .|+.++..|..+.++.. ..+++++.|++| |++|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence 89999999999999999999999999999999 89999999999999998 346999999999 89999999999
Q ss_pred HHHh-hCCCCccceeeeccCCCCchhhHHHhhhcC--CCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 147 FACT-RFKAEFPIFDKVDVNGDNAAPLYKHLKSSK--GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 147 ~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
|. . .+...|..+.......+.+...|+.+.... .+...+.+.|....|++|++|+++..+.+..+++++.+.|+.+
T Consensus 125 Y~-~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l 203 (207)
T COG1999 125 YA-ELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL 203 (207)
T ss_pred Hh-cccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence 99 5 444555555322222233344444443111 1212468999999999999999999988887888999999998
Q ss_pred hhh
Q 027134 224 LET 226 (227)
Q Consensus 224 L~~ 226 (227)
+++
T Consensus 204 ~~~ 206 (207)
T COG1999 204 LKE 206 (207)
T ss_pred hhc
Confidence 864
No 52
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.81 E-value=1.5e-19 Score=136.76 Aligned_cols=133 Identities=18% Similarity=0.263 Sum_probs=103.2
Q ss_pred CCCccCCeEEecCC---CCeeecCC-CCCCEEEEEEe-cCCCCcchHh-HHHHHHHHHHHhcCCc-EEEEEeCCCCCCCC
Q 027134 65 SKTSVHDFSVKDAK---GQDVDLSI-YKGKLLLIVNV-ASQCGLTNSN-YTELSQLYDKYKNQGL-EILAFPCNQFGAQE 137 (227)
Q Consensus 65 ~g~~~p~f~l~~~~---G~~v~l~~-~~gk~vlv~F~-aswC~~C~~~-~~~l~~l~~~~~~~~~-~vl~Vs~D~~~~~~ 137 (227)
+|+.+|+|++.+.+ |+.++|++ ++||++||.|+ +.|||.|..+ ++.+++.++++++.|+ .|++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 58999999999986 99999999 68987777777 8899999999 9999999999999999 69999998
Q ss_pred CCCHHHHHHHHHhhCCC--CccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCC
Q 027134 138 PGDNEQIQEFACTRFKA--EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS 212 (227)
Q Consensus 138 ~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~ 212 (227)
+....++|+ +++++ +||++ .|.+. ...+.|+.+..... .|.+......+|||| +|+|++.++....
T Consensus 75 --~~~~~~~~~-~~~~~~~~f~lL--sD~~~-~~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~~ 142 (155)
T cd03013 75 --DPFVMKAWG-KALGAKDKIRFL--ADGNG-EFTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEEDP 142 (155)
T ss_pred --CHHHHHHHH-HhhCCCCcEEEE--ECCCH-HHHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence 788889998 67777 89998 45443 35666654432210 111111246889999 6999998775443
No 53
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.81 E-value=1.4e-19 Score=135.96 Aligned_cols=109 Identities=16% Similarity=0.262 Sum_probs=77.1
Q ss_pred CCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccc
Q 027134 79 GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (227)
Q Consensus 79 G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (227)
|+.++++++ .||+||++||++|++++|.|++++++| ++.|++|++|. .. . + .||.
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~------~-~----~fp~ 98 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG------L-T----GFPD 98 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc------c-c----cccc
Confidence 666666654 499999999999999999999999997 48899999883 11 0 1 3443
Q ss_pred eeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcE-EEecCCCCChhhHHHHHHHHh
Q 027134 159 FDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 159 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~i~~lL 224 (227)
. .+.........|.. +++.++|++||||++|++ +.+..|..+.+++++.|+++|
T Consensus 99 ~--~~~~~~~~~~~~~~----------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 99 P--LPATPEVMQTFFPN----------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred c--cCCchHHHHHHhcc----------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 3 12111111111100 046779999999999886 447889988888999888875
No 54
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-17 Score=126.29 Aligned_cols=142 Identities=18% Similarity=0.305 Sum_probs=109.9
Q ss_pred cCCCccCCeEEecC-CCC---eeecCCCCCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCC
Q 027134 64 QSKTSVHDFSVKDA-KGQ---DVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP 138 (227)
Q Consensus 64 ~~g~~~p~f~l~~~-~G~---~v~l~~~~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~ 138 (227)
.+|+.+|+|++... .|. +++++++.||++++.|| +..-+.|+.|+..+++.|++|+++|++|++||+|
T Consensus 4 lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------- 76 (194)
T COG0450 4 LIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------- 76 (194)
T ss_pred ccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC-------
Confidence 67999999999988 774 99999998999999999 7788899999999999999999999999999999
Q ss_pred CCHHHHHHHH---HhhCC---CCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC-
Q 027134 139 GDNEQIQEFA---CTRFK---AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT- 211 (227)
Q Consensus 139 ~~~~~~~~~~---~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~- 211 (227)
+.....+|. .+..+ ++||++ .|.+++ ..+.|..+....|. ..-.+|||||+|+|+.......
T Consensus 77 -s~fsH~aW~~~~~~~~gi~~i~~Pmi--aD~~~~-vs~~ygvl~~~~g~-------a~R~~FIIDp~g~ir~~~v~~~~ 145 (194)
T COG0450 77 -SVFSHKAWKATIREAGGIGKIKFPMI--ADPKGE-IARAYGVLHPEEGL-------ALRGTFIIDPDGVIRHILVNPLT 145 (194)
T ss_pred -cHHHHHHHHhcHHhcCCccceecceE--EcCchh-HHHHcCCcccCCCc-------ceeEEEEECCCCeEEEEEEecCC
Confidence 565555555 22455 789999 566655 66777665432221 2347899999999998755332
Q ss_pred ---ChhhHHHHHHHH
Q 027134 212 ---SPLSIEKDIKKL 223 (227)
Q Consensus 212 ---~~~~l~~~i~~l 223 (227)
+.+++.+.|+.+
T Consensus 146 iGRn~dEilR~idAl 160 (194)
T COG0450 146 IGRNVDEILRVIDAL 160 (194)
T ss_pred CCcCHHHHHHHHHHH
Confidence 244555556554
No 55
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.75 E-value=2.1e-17 Score=116.22 Aligned_cols=106 Identities=64% Similarity=1.129 Sum_probs=98.2
Q ss_pred CCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 027134 70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC 149 (227)
Q Consensus 70 p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~ 149 (227)
-+|++.|.+|+.++|+.|+||++||.=-||.|+.-. ....|++++++|+++|++|+++-.++|+.+++++.+++++++.
T Consensus 2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~ 80 (108)
T PF00255_consen 2 YDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCK 80 (108)
T ss_dssp GGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHC
T ss_pred cceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHH
Confidence 479999999999999999999999999999999888 9999999999999999999999999999999999999999997
Q ss_pred hhCCCCccceeeeccCCCCchhhHHHh
Q 027134 150 TRFKAEFPIFDKVDVNGDNAAPLYKHL 176 (227)
Q Consensus 150 ~~~~~~~~~~~~~d~~~~~~~~~~~~~ 176 (227)
.+++.+||++...+.+|.+..++|+++
T Consensus 81 ~~~~~~F~vf~ki~VnG~~ahPly~~L 107 (108)
T PF00255_consen 81 EKFGVTFPVFEKIDVNGPDAHPLYKYL 107 (108)
T ss_dssp HCHT-SSEEBS-BBSSSTTB-HHHHHH
T ss_pred hccCCcccceEEEEecCCCCcHHHHHh
Confidence 778999999999999999999999876
No 56
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.75 E-value=4.7e-18 Score=126.73 Aligned_cols=108 Identities=14% Similarity=0.206 Sum_probs=85.8
Q ss_pred EecCCCCeeecCC--CCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhh
Q 027134 74 VKDAKGQDVDLSI--YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR 151 (227)
Q Consensus 74 l~~~~G~~v~l~~--~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~ 151 (227)
+.+++++...+++ .+||++||+||++||++|+.++|.+.+++++|+++ +.|+.|++|. . .+.+.+
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~-------~--~~~~~~--- 69 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN-------P--KWLPEI--- 69 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC-------c--ccHHHH---
Confidence 4455566555554 37899999999999999999999999999999765 8899999873 1 111111
Q ss_pred CCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhhh
Q 027134 152 FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 226 (227)
Q Consensus 152 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~~ 226 (227)
..| ++.++|+++++|++|+++.+..|..+.+++++.|+++++.
T Consensus 70 -------------------~~~-------------~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 70 -------------------DRY-------------RVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred -------------------HHc-------------CCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 112 6777999999999999999999999888899999998753
No 57
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.73 E-value=2.9e-17 Score=129.23 Aligned_cols=150 Identities=19% Similarity=0.255 Sum_probs=119.2
Q ss_pred CCeEEecCCCCeeecCCCCCCEEEEEEecCCCC-cchHhHHHHHHHHHHHhcC-C--cEEEEEeCCCCCCCCCCCHHHHH
Q 027134 70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQ-G--LEILAFPCNQFGAQEPGDNEQIQ 145 (227)
Q Consensus 70 p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~-~C~~~~~~l~~l~~~~~~~-~--~~vl~Vs~D~~~~~~~~~~~~~~ 145 (227)
-+|+|.|.+|+.++-.||+||++|++|..|+|| .|+.|+..|....++.+++ + +.-|+|++| |++|+.+.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence 689999999999999999999999999999999 8999999999999988864 2 457999999 8999999999
Q ss_pred HHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCC--CccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG--DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
+|+ ++|....--++..-..-.++.+.|+++-++.+...+ +-|.|.=..|||||+|+.+..+--+.+++++.+.|.+.
T Consensus 196 eY~-~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~ 274 (280)
T KOG2792|consen 196 EYV-SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKH 274 (280)
T ss_pred HHH-HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHH
Confidence 999 787776554433333334456667666555332222 45888889999999999998876677788877777654
Q ss_pred h
Q 027134 224 L 224 (227)
Q Consensus 224 L 224 (227)
+
T Consensus 275 v 275 (280)
T KOG2792|consen 275 V 275 (280)
T ss_pred H
Confidence 3
No 58
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.68 E-value=1e-16 Score=118.43 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=96.7
Q ss_pred eEEecCCCCeeecC-CCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcC--CcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027134 72 FSVKDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFA 148 (227)
Q Consensus 72 f~l~~~~G~~v~l~-~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~D~~~~~~~~~~~~~~~~~ 148 (227)
..+.+.+|..+..+ .+.||+|.++|.|.|||+|+.-.|.|.++|++.+++ .++||.||.|. +.+....|.
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~-------~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR-------DEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC-------CHHHHHHHH
Confidence 56888999988887 579999999999999999999999999999999875 49999999996 788889988
Q ss_pred HhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEec
Q 027134 149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY 207 (227)
Q Consensus 149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~ 207 (227)
.+++.+|..+...|.........| .+.++|+..+++++|+++...
T Consensus 88 -~~~~~~W~~iPf~d~~~~~l~~ky-------------~v~~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 88 -LEHHGDWLAIPFGDDLIQKLSEKY-------------EVKGIPALVILKPDGTVVTED 132 (157)
T ss_pred -HhcCCCeEEecCCCHHHHHHHHhc-------------ccCcCceeEEecCCCCEehHh
Confidence 666777777754554444445555 889999999999999888663
No 59
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.68 E-value=4.3e-16 Score=109.95 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccC
Q 027134 86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (227)
Q Consensus 86 ~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (227)
+.+||+|||+||++||++|+.++|.|+++.+++ .++.++.|+.|. + ....+++ ++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~-------~-~~~~~l~-~~-------------- 66 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE-------N-DSTMELC-RR-------------- 66 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC-------C-hHHHHHH-HH--------------
Confidence 346999999999999999999999999999999 348999999873 2 2223333 22
Q ss_pred CCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHH
Q 027134 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIK 221 (227)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~ 221 (227)
| ++.++|+.+++ ++|+++.++.|.. ++++.+.+.
T Consensus 67 -------~-------------~V~~~Pt~~~~-~~G~~v~~~~G~~-~~~l~~~~~ 100 (103)
T cd02985 67 -------E-------------KIIEVPHFLFY-KDGEKIHEEEGIG-PDELIGDVL 100 (103)
T ss_pred -------c-------------CCCcCCEEEEE-eCCeEEEEEeCCC-HHHHHHHHH
Confidence 1 66778995555 8999999999965 555665553
No 60
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1e-15 Score=112.18 Aligned_cols=91 Identities=20% Similarity=0.266 Sum_probs=76.7
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.+++|||+|||+||+||+...|.|+++..+|.++ +.+.-|++|. .. +
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~~-e------------------------ 106 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------HP-E------------------------ 106 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------cc-c------------------------
Confidence 4779999999999999999999999999999876 9999999883 11 0
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhhh
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 226 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~~ 226 (227)
...-| +|...|+++++ ++|+.+.+..|..+.+.+++.|++.|++
T Consensus 107 -la~~Y-------------~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~~ 150 (150)
T KOG0910|consen 107 -LAEDY-------------EISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLKL 150 (150)
T ss_pred -hHhhc-------------ceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhcC
Confidence 11112 77778998888 7899999999999999999999998863
No 61
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.9e-15 Score=108.46 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=106.1
Q ss_pred cccCCCccCCeEEecCCCCeeecCCCCCC-EEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCC
Q 027134 62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGK-LLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (227)
Q Consensus 62 ~~~~g~~~p~f~l~~~~G~~v~l~~~~gk-~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~ 139 (227)
..+.|+.+|||+|.|.||+.++|.++.|+ +||++|| +...|.|.++...+++-|++++..+.+|+++|.|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D-------- 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD-------- 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence 45899999999999999999999999876 7777777 6788999999999999999999989999999988
Q ss_pred CHHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChh-hHHH
Q 027134 140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPL-SIEK 218 (227)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~-~l~~ 218 (227)
+...-++|. .+++++|.++ .|...+ +...++.-....||.. .-.+||+|+.|...........|+ .+.+
T Consensus 134 ~s~sqKaF~-sKqnlPYhLL--SDpk~e-~ik~lGa~k~p~gg~~------~Rsh~if~kg~~k~~ik~~~isPevsvd~ 203 (211)
T KOG0855|consen 134 DSASQKAFA-SKQNLPYHLL--SDPKNE-VIKDLGAPKDPFGGLP------GRSHYIFDKGGVKQLIKNNQISPEVSVDE 203 (211)
T ss_pred chHHHHHhh-hhccCCeeee--cCcchh-HHHHhCCCCCCCCCcc------cceEEEEecCCeEEEEEecccCccccHHH
Confidence 566777887 6779999888 555544 3333322221122211 236799998876555544444454 3555
Q ss_pred HHHHHh
Q 027134 219 DIKKLL 224 (227)
Q Consensus 219 ~i~~lL 224 (227)
.++.++
T Consensus 204 a~k~~~ 209 (211)
T KOG0855|consen 204 ALKFLK 209 (211)
T ss_pred HHHHHh
Confidence 555443
No 62
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.61 E-value=6.1e-15 Score=105.43 Aligned_cols=91 Identities=12% Similarity=0.054 Sum_probs=73.2
Q ss_pred CCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccC
Q 027134 86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (227)
Q Consensus 86 ~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (227)
...|++++|+||++||++|+...|.+.++.+++++.++.+..|++|. . .. .+ .+
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-------~-~~---l~-~~-------------- 74 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-------E-RR---LA-RK-------------- 74 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-------c-HH---HH-HH--------------
Confidence 34689999999999999999999999999999987669999998773 1 11 11 11
Q ss_pred CCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
| +++++|+++++ ++|+++.+..|..+.+.+.+.|+++
T Consensus 75 -------~-------------~V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 75 -------L-------------GAHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred -------c-------------CCccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 1 67778999999 5899999999988888888877754
No 63
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.61 E-value=8.4e-15 Score=106.86 Aligned_cols=105 Identities=14% Similarity=0.241 Sum_probs=76.9
Q ss_pred CC-CEEEEEEecCCCCcchHhHHHHH---HHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 88 KG-KLLLIVNVASQCGLTNSNYTELS---QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 88 ~g-k~vlv~F~aswC~~C~~~~~~l~---~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
.| |+++|+||++||++|+...+.+. ++.+.+++ ++.++.|++|. +. .... |+.. .
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~-~~~~---------~~~~---~ 70 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DK-EVTD---------FDGE---A 70 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cc-eeec---------cCCC---C
Confidence 57 89999999999999999999875 56667664 58899999874 11 1111 1100 0
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCC-CcEEEecCCCCChhhHHHHHHHHhhh
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEKDIKKLLET 226 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~i~~lL~~ 226 (227)
.........| ++.++|+++++|++ |+++.+..|..+.+.+.+.|+.++++
T Consensus 71 ~~~~~l~~~~-------------~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 71 LSEKELARKY-------------RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred ccHHHHHHHc-------------CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 0111122222 78889999999999 89999999999888999999998865
No 64
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.59 E-value=7.2e-15 Score=103.08 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=65.1
Q ss_pred CCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeecc
Q 027134 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (227)
Q Consensus 85 ~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (227)
++++||+++|+|||+||++|+.++|.++++++++++ +.++.|..|. .. ..
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~-------~~---~~------------------ 63 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESS-------IK---PS------------------ 63 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCC-------CC---HH------------------
Confidence 467999999999999999999999999999999964 7788875431 00 00
Q ss_pred CCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 027134 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKD 219 (227)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (227)
....| ++.++||++++++ | .+.++.|..+.+.+.+.
T Consensus 64 ----l~~~~-------------~V~~~PT~~lf~~-g-~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 64 ----LLSRY-------------GVVGFPTILLFNS-T-PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred ----HHHhc-------------CCeecCEEEEEcC-C-ceeEecCCCCHHHHHhh
Confidence 11222 7788999999975 5 67788898777666553
No 65
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.58 E-value=1.4e-14 Score=102.06 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=67.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.|++++|+|||+||++|+...|.+.++++++++..+.++.|+.|. .+ .+ ++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~--------~~----~~-~~---------------- 66 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT--------ID----TL-KR---------------- 66 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC--------HH----HH-HH----------------
Confidence 588999999999999999999999999999986557888888652 11 11 11
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
| +++++|+.+++ ++|+++.+..|. +++.+.+.|+++
T Consensus 67 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 67 -----Y-------------RGKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred -----c-------------CCCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhhC
Confidence 1 66778975555 799999999886 567788887764
No 66
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.58 E-value=5e-15 Score=121.53 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=82.8
Q ss_pred CCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCcc
Q 027134 78 KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (227)
Q Consensus 78 ~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (227)
.++...+++++|+++||+||++||++|+.++|.|++++++| ++.|++|++|. .. ...||
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~-------~~-----------~~~fp 213 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG-------GP-----------LPGFP 213 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC-------Cc-----------cccCC
Confidence 34457788999999999999999999999999999999998 38899999984 11 01244
Q ss_pred ceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCC-CcEEEecCCCCChhhHHHHHHHHhh
Q 027134 158 IFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 158 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
.. +.+.. ....| ++.++|++||+|++ |++.....|..+.+++.+.|..+..
T Consensus 214 ~~---~~d~~-la~~~-------------gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 214 NA---RPDAG-QAQQL-------------KIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred cc---cCCHH-HHHHc-------------CCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 43 11111 22233 88999999999995 5666667788888888888876643
No 67
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.57 E-value=2.3e-14 Score=99.61 Aligned_cols=85 Identities=12% Similarity=0.236 Sum_probs=68.3
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
+|++++|+||++||++|+...|.++++.+.+++. +.++.|+.|. .. +.. ++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~--------~~---~l~-~~---------------- 61 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCDA--------QP---QIA-QQ---------------- 61 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEeccC--------CH---HHH-HH----------------
Confidence 5889999999999999999999999999999764 8888988773 11 111 11
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i 220 (227)
| ++.++|++++++ +|+++.++.|..+.+++...|
T Consensus 62 -----~-------------~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 62 -----F-------------GVQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred -----c-------------CCCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 1 566789999996 899999999988777777655
No 68
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.55 E-value=2.7e-14 Score=100.81 Aligned_cols=90 Identities=11% Similarity=0.119 Sum_probs=70.1
Q ss_pred CCCEEEEEEecCCCCcchHhHHHH---HHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeecc
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (227)
.||+++|.||++||++|+...+.+ .++.+.+++ ++.++.|+++. +.....+++ ++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~------------- 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KR------------- 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HH-------------
Confidence 589999999999999999999887 578888876 59999998763 222223332 22
Q ss_pred CCCCchhhHHHhhhcCCCCCCCccccceeEEEECC-CCcEEEecCCCCChhhHHHHH
Q 027134 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK-EGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~-~G~I~~~~~g~~~~~~l~~~i 220 (227)
| ++.++|+++++++ +|+++.++.|..+.+++.+.|
T Consensus 68 --------~-------------~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 68 --------F-------------GVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred --------c-------------CCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 1 6677899999999 999999999998888777665
No 69
>PRK09381 trxA thioredoxin; Provisional
Probab=99.54 E-value=6.2e-14 Score=99.75 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=73.3
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.+++++|+||++||++|+...|.++++.++++++ +.+..|+.|. .. . .. +
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~-------~~-~---~~-~----------------- 69 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP-G---TA-P----------------- 69 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC-------Ch-h---HH-H-----------------
Confidence 4779999999999999999999999999999875 8999998873 11 1 11 1
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
.| +++..|+++++ ++|+++.+..|..+.++++..|++.|+
T Consensus 70 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 70 ----KY-------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred ----hC-------------CCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 11 66678998888 699999999998888889988888763
No 70
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.54 E-value=3e-14 Score=101.25 Aligned_cols=78 Identities=9% Similarity=-0.012 Sum_probs=62.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.++++||+|||+||++|+...|.|.++.+++++. +.++-|++|. .. ++ .
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-------~~-~l---a------------------- 61 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-------VP-DF---N------------------- 61 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-------CH-HH---H-------------------
Confidence 4679999999999999999999999999999865 7899999884 11 11 1
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCCh
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSP 213 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~ 213 (227)
..| +|.++|+.+++ ++|+.+.+..|..+.
T Consensus 62 ---~~~-------------~V~~iPTf~~f-k~G~~v~~~~G~~~~ 90 (114)
T cd02954 62 ---KMY-------------ELYDPPTVMFF-FRNKHMKIDLGTGNN 90 (114)
T ss_pred ---HHc-------------CCCCCCEEEEE-ECCEEEEEEcCCCCC
Confidence 122 67778997777 789999999886654
No 71
>PHA02278 thioredoxin-like protein
Probab=99.52 E-value=8.6e-14 Score=97.87 Aligned_cols=87 Identities=14% Similarity=0.274 Sum_probs=64.7
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.++++||+|||+||++|+...|.+.++.+++..+ +.++.|++|. ......+.
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~-------~~~d~~~l-------------------- 64 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDA-------EDVDREKA-------------------- 64 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCc-------cccccHHH--------------------
Confidence 5789999999999999999999999998886443 7789999883 10000111
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEK 218 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~ 218 (227)
...| +|.++|+.+++ ++|+.+.+..|..+.+.+.+
T Consensus 65 --~~~~-------------~I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 65 --VKLF-------------DIMSTPVLIGY-KDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred --HHHC-------------CCccccEEEEE-ECCEEEEEEeCCCCHHHHHh
Confidence 1112 77789997777 68999999999877765543
No 72
>PRK10996 thioredoxin 2; Provisional
Probab=99.49 E-value=2.8e-13 Score=100.67 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=71.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.+|+++|+||++||++|+...+.+.+++++++++ +.++.|++|. . . ++. ++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~-------~-~---~l~-~~---------------- 101 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTEA-------E-R---ELS-AR---------------- 101 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCCC-------C-H---HHH-Hh----------------
Confidence 5899999999999999999999999999998764 8888888763 1 1 111 11
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHh
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL 224 (227)
| ++.++|+++++ ++|+++.++.|..+.+.+++.|++++
T Consensus 102 -----~-------------~V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 102 -----F-------------RIRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred -----c-------------CCCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 1 66778998777 58999999999988888998888764
No 73
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.48 E-value=1.7e-13 Score=96.20 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=69.7
Q ss_pred CCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCcc
Q 027134 78 KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (227)
Q Consensus 78 ~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (227)
+++.+...-..+++++|.||++||++|+...|.+.++.+++++. +.+..|++|. .. ..+ ++
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~-------~~----~~~-~~------ 67 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD-------DR----MLC-RS------ 67 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc-------cH----HHH-HH------
Confidence 33333333345689999999999999999999999999999865 8999999873 11 122 12
Q ss_pred ceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHH
Q 027134 158 IFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEK 218 (227)
Q Consensus 158 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~ 218 (227)
| +++.+|+.+++ ++|+.+.++.|..+.+.+.+
T Consensus 68 ---------------~-------------~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 68 ---------------Q-------------GVNSYPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred ---------------c-------------CCCccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 1 56668998888 78998888999877766554
No 74
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.47 E-value=8.2e-14 Score=99.50 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=67.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHH---HHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeecc
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYD---KYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~---~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (227)
+||++||.||.+|||.|+...+.+.+..+ .+++ ++.++.++++. .......+. ...+...+..
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~----- 69 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDD-------SRDESEAVL-DFDGQKNVRL----- 69 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHS-------HHHHHHHHH-SHTCHSSCHH-----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCC-------ccccccccc-ccccchhhhH-----
Confidence 68999999999999999988888876433 3333 48999999873 333344444 2212211111
Q ss_pred CCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 027134 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i 220 (227)
. ...+...+ ++.++|+++++|++|+++.+..|..+++++.+.|
T Consensus 70 ~---~~~l~~~~----------~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 70 S---NKELAQRY----------GVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp H---HHHHHHHT----------T--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred H---HHHHHHHc----------CCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 0 11222222 8899999999999999999999999988877654
No 75
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.5e-13 Score=109.85 Aligned_cols=90 Identities=17% Similarity=0.320 Sum_probs=77.0
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
+-++|||+||++||++|+...|.|.++..+|+++ +.+.-||+|. ...+
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~--------~p~v----------------------- 89 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA--------EPMV----------------------- 89 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc--------chhH-----------------------
Confidence 4569999999999999999999999999999987 9999999983 1111
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
...| +|+.+|+.|++ ++|+-+.-+.|..+.+.+++.|++++.
T Consensus 90 --Aaqf-------------giqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 90 --AAQF-------------GVQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred --HHHh-------------CcCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 1122 88889999999 899999999999988889999998874
No 76
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.46 E-value=4.3e-13 Score=94.02 Aligned_cols=85 Identities=15% Similarity=0.204 Sum_probs=64.6
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
+|+ ++|+||++||++|+...|.++++.+.++..++.+..|+.|. ..+ .+ +
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~~----~~-~----------------- 65 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EPG----LS-G----------------- 65 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CHh----HH-H-----------------
Confidence 566 67999999999999999999999998876568888888763 111 11 1
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIK 221 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~ 221 (227)
.| ++.++|+++++ ++|++ .++.|..+.+++.+.|+
T Consensus 66 ----~~-------------~i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 66 ----RF-------------FVTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred ----Hc-------------CCcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence 11 66778998887 88986 67888877777776654
No 77
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.45 E-value=7.4e-13 Score=97.70 Aligned_cols=91 Identities=9% Similarity=0.034 Sum_probs=70.0
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.+++|||+|||+||++|+...|.|.++.+++++. +.|+-|++|. .. ++. ..+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe--------~~---dla-~~y--------------- 73 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE--------VP---DFN-TMY--------------- 73 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC--------CH---HHH-HHc---------------
Confidence 5789999999999999999999999999999876 8889999984 11 222 221
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCc-EEEecCC--------CCChhhHHHHHHHHhh
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGN-VVERYAP--------TTSPLSIEKDIKKLLE 225 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~-I~~~~~g--------~~~~~~l~~~i~~lL~ 225 (227)
+++..|+++++=++|+ .+.+..| ..+.+++.+.++.++.
T Consensus 74 -------------------~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 74 -------------------ELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred -------------------CccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 4444567775557888 8888888 4566778888887764
No 78
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.44 E-value=1.9e-12 Score=93.98 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=68.6
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.|+.++|+|+++|||+|+...|.|.++.++. ++.|..|++|.....+..+.+++.++. +++++..
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~----------- 86 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPT----------- 86 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-HHcCCcc-----------
Confidence 4778999999999999999999999999882 377999998842111222334566665 4433322
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC-ChhhHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT-SPLSIEKD 219 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~-~~~~l~~~ 219 (227)
++.++|+.+++ ++|+.+.+..|.. +.+++++.
T Consensus 87 -------------------~i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 87 -------------------SFMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDI 119 (122)
T ss_pred -------------------cCCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHH
Confidence 56668998877 7899999998843 34444443
No 79
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.44 E-value=5.8e-13 Score=95.21 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=65.7
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.++++||.|||+||++|+...|.+.++.+++++. +.+..|+.|. ..+. +.++
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~-------~~~l----~~~~---------------- 79 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW-------PQGK----CRKQ---------------- 79 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC-------ChHH----HHHh----------------
Confidence 5689999999999999999999999999999875 8899998873 1111 1011
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEK 218 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~ 218 (227)
| +|.++|+..++ ++|+...++.|..+.+.+..
T Consensus 80 -----~-------------~I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 80 -----K-------------HFFYFPVIHLY-YRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred -----c-------------CCcccCEEEEE-ECCccceEEeCCCCHHHHHh
Confidence 1 56668998888 78888888888887777654
No 80
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.4e-13 Score=93.31 Aligned_cols=85 Identities=22% Similarity=0.368 Sum_probs=68.3
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.+|.++|+|+|+||++|+...|.+.++..+|++ +.++.|++| . +...+ ++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~-~~---------------- 69 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVA-KE---------------- 69 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHH-Hh----------------
Confidence 379999999999999999999999999999988 999999987 1 33333 11
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKK 222 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~ 222 (227)
| ++..+||..++ ++|+.+.+.+|.... ++++.|.+
T Consensus 70 -----~-------------~V~~~PTf~f~-k~g~~~~~~vGa~~~-~l~~~i~~ 104 (106)
T KOG0907|consen 70 -----F-------------NVKAMPTFVFY-KGGEEVDEVVGANKA-ELEKKIAK 104 (106)
T ss_pred -----c-------------CceEeeEEEEE-ECCEEEEEEecCCHH-HHHHHHHh
Confidence 1 67778998777 899999999987644 56666554
No 81
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.42 E-value=1.3e-12 Score=92.11 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=63.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCC--cEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (227)
++++++|.||++||++|+...|.++++++++++++ +.+..++.+. .. ..
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--------~~---~~------------------ 64 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--------YS---SI------------------ 64 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------CH---hH------------------
Confidence 45799999999999999999999999999997643 6666666542 00 11
Q ss_pred CCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHH
Q 027134 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKK 222 (227)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~ 222 (227)
...| ++.++|+.++++ +| +..++.|..+.+.+.+.+++
T Consensus 65 ----~~~~-------------~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 65 ----ASEF-------------GVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred ----Hhhc-------------CCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHh
Confidence 1112 677799999994 45 44678887777777777665
No 82
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.42 E-value=1.4e-12 Score=90.86 Aligned_cols=85 Identities=14% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.+++++|.||++||+.|+...|.++++.++++++ +.++.|+.|. .. + .. .+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~-v~~~~id~d~-------~~-~---l~-~~---------------- 62 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA-VHFVEIDIDE-------DQ-E---IA-EA---------------- 62 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc-eEEEEEECCC-------CH-H---HH-HH----------------
Confidence 5789999999999999999999999999998764 8888888763 11 1 11 11
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i 220 (227)
+ ++.++|+++++ ++|+++.+..|..+.+++.+.|
T Consensus 63 -----~-------------~v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 63 -----A-------------GIMGTPTVQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred -----C-------------CCeeccEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 1 56678999999 4799999999988777766554
No 83
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.42 E-value=5.7e-13 Score=93.36 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=63.3
Q ss_pred EEEEEEecCCCCcchHhHHHHHHHHHHHhc--CCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCC
Q 027134 91 LLLIVNVASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (227)
Q Consensus 91 ~vlv~F~aswC~~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (227)
+++|.||++||++|+...|.++++++++++ .++.++.|+.|. . . ..+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-------~-~---~~~-------------------- 66 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-------H-R---ELC-------------------- 66 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-------C-h---hhH--------------------
Confidence 599999999999999999999999999986 358888887662 1 1 111
Q ss_pred chhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 027134 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKD 219 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (227)
..| ++.++|+.+++ ++|+.+.++.|..+.+.+.+.
T Consensus 67 --~~~-------------~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 67 --SEF-------------QVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred --hhc-------------CCCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence 111 66678999999 789988899998877666543
No 84
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.42 E-value=1.7e-12 Score=91.42 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.+++++|.||++||++|+...|.++++.+++++. +.+..|+.|. .. +.+ ++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~--------~~---~~~-~~---------------- 68 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQK--------YE---SLC-QQ---------------- 68 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCc--------hH---HHH-HH----------------
Confidence 4679999999999999999999999999999654 8899998772 11 122 11
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCC-hhhHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS-PLSIEKD 219 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~-~~~l~~~ 219 (227)
| +++.+|+.+++.+.|+.+.++.|..+ .+++.+.
T Consensus 69 -----~-------------~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 69 -----A-------------NIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred -----c-------------CCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 1 66678999999776688899999775 6665543
No 85
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.38 E-value=2.9e-12 Score=91.23 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=66.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
+||+++|.||++||++|+...|.+.++.+++++.++.++.|+.|. +.. .++
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~~---~~~------------------- 70 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQR---EFA------------------- 70 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cch---hhH-------------------
Confidence 578999999999999999999999999999997679999998872 111 111
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCC-CChhhHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-TSPLSIEK 218 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~-~~~~~l~~ 218 (227)
...| ++.++|++++++++++....+.|. .+.+.+.+
T Consensus 71 --~~~~-------------~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 71 --KEEL-------------QLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred --Hhhc-------------CCCcCCEEEEEcCCCCCceeccCCCCCHHHHHh
Confidence 1111 667789999998888777788874 45555543
No 86
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.38 E-value=2.2e-12 Score=90.18 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=69.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCC-cEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG-LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~-~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (227)
++++++|.||++||+.|+...+.++++.+.++..+ +.+..+..|. . .... ++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~----~~~~-~~--------------- 64 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-------E----KDLA-SR--------------- 64 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-------h----HHHH-Hh---------------
Confidence 68899999999999999999999999999998653 7777777652 1 1111 11
Q ss_pred CCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
| ++.++|+.+++++++. +..+.|..+.+.+...|++.
T Consensus 65 ------~-------------~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 65 ------F-------------GVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ------C-------------CCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 1 6667899999998877 66888888888888887764
No 87
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.37 E-value=5.6e-12 Score=87.80 Aligned_cols=88 Identities=22% Similarity=0.324 Sum_probs=70.0
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (227)
++.++|.||++||+.|+...+.++++.++++++ +.++.|+.|. .. . +. ++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~-------~~-~---~~-~~----------------- 63 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVDE-------NP-D---IA-AK----------------- 63 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECCC-------CH-H---HH-HH-----------------
Confidence 579999999999999999999999999998754 9999998763 11 1 11 11
Q ss_pred chhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHh
Q 027134 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL 224 (227)
| ++..+|+.+++ ++|+++.+..|..+.+.+.+.|++.|
T Consensus 64 ----~-------------~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 64 ----Y-------------GIRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred ----c-------------CCCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 1 66678999999 68999989888888788888887653
No 88
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.36 E-value=1.2e-12 Score=94.30 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=36.5
Q ss_pred CCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 85 ~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+..+||+|+|+||++||++|+...|.+.+..+.... +..++.|++|
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 344789999999999999999999999987665543 3456667766
No 89
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.35 E-value=5e-12 Score=89.70 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=66.4
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.|++++|.||++||++|+...|.+.++.++++++ +.++.|+.|. . ...+.+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~-------~--~~~~~~------------------- 67 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE-------D--KNKPLC------------------- 67 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc-------c--ccHHHH-------------------
Confidence 4788999999999999999999999999999764 8899998873 0 011111
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCC----cEEEecCCCCChhhHHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG----NVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G----~I~~~~~g~~~~~~l~~~i 220 (227)
..| ++.++|+.+++++.+ .+...+.|..+.+.+.+.|
T Consensus 68 ---~~~-------------~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 68 ---GKY-------------GVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred ---HHc-------------CCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 112 677789999998876 3566788877777666654
No 90
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.33 E-value=1.7e-11 Score=85.68 Aligned_cols=87 Identities=22% Similarity=0.364 Sum_probs=71.5
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.++++||.||++||++|+...|.+.++.+++++ ++.++.|+.+. . ...+ ++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~----~~l~-~~---------------- 66 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------N----KELC-KK---------------- 66 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------S----HHHH-HH----------------
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-------c----chhh-hc----------------
Confidence 368999999999999999999999999999987 69999998763 2 2222 22
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKK 222 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~ 222 (227)
| ++..+|+.+++ ++|+...++.|..+.+.+.+.|++
T Consensus 67 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 67 -----Y-------------GVKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp -----T-------------TCSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred -----c-------------CCCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 1 66678998888 678888899999889899998876
No 91
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.33 E-value=1.3e-11 Score=88.91 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=69.9
Q ss_pred CCEEEEEEecCCCCc--ch--HhHHHHHHHHHHH-hcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 89 GKLLLIVNVASQCGL--TN--SNYTELSQLYDKY-KNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 89 gk~vlv~F~aswC~~--C~--~~~~~l~~l~~~~-~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
..++|++||+.||++ |+ ...|.+.++.+++ +..++.|..|++|. . .++.
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-------~-~~La------------------ 80 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-------D-AKVA------------------ 80 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------C-HHHH------------------
Confidence 459999999999988 99 7778899988887 23359999999884 1 1111
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
..| +|.++||.+++ ++|+++. +.|..+.+.+.+.|++++.
T Consensus 81 -------~~~-------------~I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~~ 120 (120)
T cd03065 81 -------KKL-------------GLDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLIE 120 (120)
T ss_pred -------HHc-------------CCccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHhC
Confidence 112 77789998888 6899887 8999999999999998863
No 92
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.32 E-value=1.2e-11 Score=98.49 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=70.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.+++++|+||++||++|+...|.++++.+++++. +.+..|+.|. . .+.. +
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~-------~----~~l~-~----------------- 100 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATR-------A----LNLA-K----------------- 100 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcc-------c----HHHH-H-----------------
Confidence 3579999999999999999999999999999864 7777776542 1 1111 1
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
.| ++.++|++++++ +|+++....|..+.+++.+.+.+.++
T Consensus 101 ----~~-------------~I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 101 ----RF-------------AIKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred ----Hc-------------CCCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 12 677789999997 79998888888888888888877654
No 93
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.31 E-value=6.6e-12 Score=88.18 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=62.7
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcC-CcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~-~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (227)
++++++|.||++||++|+...|.++++.+++++. .+.++.|+.+. . ....+.
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~--~~~~~~------------------ 68 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK-------P--EHDALK------------------ 68 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC-------C--ccHHHH------------------
Confidence 5679999999999999999999999999999752 36676676652 0 001111
Q ss_pred CCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 027134 167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKD 219 (227)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (227)
..| +++++|+++++ ++|+++.++.|..+.+.+.+.
T Consensus 69 ----~~~-------------~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 69 ----EEY-------------NVKGFPTFKYF-ENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred ----HhC-------------CCccccEEEEE-eCCCeeEEeCCCCCHHHHHhh
Confidence 111 66678986555 689999999998877766543
No 94
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.30 E-value=1.5e-11 Score=92.36 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=62.4
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
++++++|+||++||++|+...|.++++.+++++.++.++.|++|. .. ++ . +++++..
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-------~~-~l---a-~~~~V~~----------- 102 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-------FP-NV---A-EKFRVST----------- 102 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-------CH-HH---H-HHcCcee-----------
Confidence 467999999999999999999999999999987679999999984 22 22 2 2323221
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCC
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g 209 (227)
-| +++++||.+++ ++|+.+.+..|
T Consensus 103 ----~~-------------~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 103 ----SP-------------LSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred ----cC-------------CcCCCCEEEEE-ECCEEEEEEec
Confidence 01 45668998888 58999999887
No 95
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.29 E-value=2e-11 Score=86.63 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=62.5
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcC-----CcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeee
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-----GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV 162 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~-----~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (227)
.+++++|.||++||++|+...|.++++.+++++. .+.+..|+.|. .. +.+ ++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-------~~----~l~-~~----------- 73 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-------ES----DIA-DR----------- 73 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-------CH----HHH-Hh-----------
Confidence 4679999999999999999999999999887532 37788888773 11 111 12
Q ss_pred ccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcE-EEecCCCCChhhHHHH
Q 027134 163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEKD 219 (227)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~ 219 (227)
| +++++|+++++ ++|++ ...+.|..+.+.+.+.
T Consensus 74 ----------~-------------~v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 74 ----------Y-------------RINKYPTLKLF-RNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred ----------C-------------CCCcCCEEEEE-eCCcCcceecCCCCCHHHHHhh
Confidence 1 66778998888 78884 4677787766666543
No 96
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=9.1e-11 Score=87.57 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=93.4
Q ss_pred cCCCccCCeEEec---CCCCeeecCCCCCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCC
Q 027134 64 QSKTSVHDFSVKD---AKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (227)
Q Consensus 64 ~~g~~~p~f~l~~---~~G~~v~l~~~~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~ 139 (227)
.+..++|+|+-+- -.-+.++|+||+||+|++.|| ..+--.|+.+.-.+.+.+++|++.|.+|+++|+|
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D-------- 76 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD-------- 76 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------
Confidence 3445568886543 344789999999999999998 4455589999999999999999999999999999
Q ss_pred CHHHHHHHH---HhhCC---CCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCC
Q 027134 140 DNEQIQEFA---CTRFK---AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (227)
Q Consensus 140 ~~~~~~~~~---~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g 209 (227)
+.....+|+ +++.| .++|++ .|.+.+ ..+-|+.+....|-. .-..||||++|.++..-+.
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPll--sD~~~~-IsrdyGvL~~~~G~~-------lRglfIId~~gi~R~it~N 142 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLL--SDLNHE-ISRDYGVLKEDEGIA-------LRGLFIIDPDGILRQITIN 142 (196)
T ss_pred chhhhhhHhcCchhhCCcCcccccee--eccchh-hHHhcCceecCCCcc-------eeeeEEEccccceEEeeec
Confidence 555555554 23334 458888 555444 556666665544322 2368999999999885443
No 97
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.28 E-value=3e-11 Score=83.83 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=61.1
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (227)
+++++|+||++||++|+...+.|.++.+++. .++.++.|+.+. . .+.. ++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~~-------~----~~~~-~~----------------- 63 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAEE-------L----PEIS-EK----------------- 63 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEcccc-------C----HHHH-Hh-----------------
Confidence 7899999999999999999999999999973 348888776542 1 1111 11
Q ss_pred chhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 027134 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i 220 (227)
| ++...|+.+++ ++|+++.+..|.. ++.+.+.|
T Consensus 64 ----~-------------~i~~~Pt~~~~-~~g~~~~~~~g~~-~~~l~~~~ 96 (97)
T cd02984 64 ----F-------------EITAVPTFVFF-RNGTIVDRVSGAD-PKELAKKV 96 (97)
T ss_pred ----c-------------CCccccEEEEE-ECCEEEEEEeCCC-HHHHHHhh
Confidence 1 66678998888 5899999988864 44455443
No 98
>PTZ00051 thioredoxin; Provisional
Probab=99.27 E-value=3.3e-11 Score=83.85 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.+++++|+||++||++|+...+.+.++.+++++ +.++.|+.|. . .... ++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~--------~---~~~~-~~---------------- 66 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDE--------L---SEVA-EK---------------- 66 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcc--------h---HHHH-HH----------------
Confidence 478999999999999999999999999998754 7888887652 1 1111 11
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~ 217 (227)
| ++.++|+.+++ ++|+++.++.|. .++++.
T Consensus 67 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 67 -----E-------------NITSMPTFKVF-KNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred -----C-------------CCceeeEEEEE-eCCeEEEEEeCC-CHHHhh
Confidence 1 66778986655 899999999985 344443
No 99
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.27 E-value=3.3e-11 Score=85.15 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=40.4
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
.+|+|||+|+++||++|+..-|.|.++.++|++. +.++.|++|.
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe 56 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK 56 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc
Confidence 6899999999999999999999999999999765 8899998873
No 100
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.26 E-value=4.5e-11 Score=84.50 Aligned_cols=82 Identities=9% Similarity=0.079 Sum_probs=66.2
Q ss_pred CCCEEEEEEecCC--CCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccC
Q 027134 88 KGKLLLIVNVASQ--CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (227)
Q Consensus 88 ~gk~vlv~F~asw--C~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (227)
.|.++||.||++| ||+|+...|.|.++.++|+++ +.++-|++|+ .. ++.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------~~-~la-------------------- 76 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------EQ-ALA-------------------- 76 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------CH-HHH--------------------
Confidence 5678999999997 999999999999999999876 8899999874 21 211
Q ss_pred CCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHH
Q 027134 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217 (227)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~ 217 (227)
..| +|.++||.+++ ++|+++.+..|..+.+++.
T Consensus 77 -----~~f-------------~V~sIPTli~f-kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 77 -----ARF-------------GVLRTPALLFF-RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred -----HHc-------------CCCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence 122 77889997777 7899999999988776654
No 101
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.25 E-value=3.4e-11 Score=108.65 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=72.4
Q ss_pred cCCCCCCEEEEEEecCCCCcchHhHHHH---HHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCcccee
Q 027134 84 LSIYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFD 160 (227)
Q Consensus 84 l~~~~gk~vlv~F~aswC~~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (227)
.+..+||+|+|+||++||++|+...+.. .++.++++ ++.++.|++++ +.++.+++. ++
T Consensus 469 ~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~--------- 529 (571)
T PRK00293 469 EAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KH--------- 529 (571)
T ss_pred HHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HH---------
Confidence 3445689999999999999999877664 56777775 48888888764 222223333 22
Q ss_pred eeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEE--EecCCCCChhhHHHHHHHHh
Q 027134 161 KVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV--ERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~--~~~~g~~~~~~l~~~i~~lL 224 (227)
| ++.++|+++++|++|+++ .++.|..+.+++.+.++++.
T Consensus 530 ------------~-------------~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 530 ------------Y-------------NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred ------------c-------------CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 1 667789999999999984 68889889989998888754
No 102
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.24 E-value=3.5e-11 Score=84.47 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=65.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhc-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (227)
.+++++|.||++||++|+...|.+.++.++++. .++.++.++.+. . ...++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~---~~~~~------------------ 68 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-------A---NKDLA------------------ 68 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-------c---chhhH------------------
Confidence 367999999999999999999999999999973 358888887652 0 11111
Q ss_pred CCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 027134 167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKD 219 (227)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (227)
..| ++.++|+++++++.|+....+.|..+.+.+.+.
T Consensus 69 ----~~~-------------~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 69 ----KKY-------------GVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred ----HhC-------------CCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 111 666789999998887777788887776666543
No 103
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-10 Score=84.50 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=94.7
Q ss_pred ccCCCccCCeEEecCCCCeeecCCCCCCEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCH
Q 027134 63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (227)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~ 141 (227)
+++|+.+|+|++.+.+.+.++++++.||..+|..+ +-.-|.|-.+...+++...++.+ +.|+.||.| .+
T Consensus 18 ~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------LP 87 (158)
T COG2077 18 PQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------LP 87 (158)
T ss_pred CccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------Ch
Confidence 48999999999999999999999999998777777 55889999999999999888866 999999999 67
Q ss_pred HHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCC--CCCCCccccceeEEEECCCCcEEEecC
Q 027134 142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG--GLFGDSIKWNFSKFLVDKEGNVVERYA 208 (227)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~P~~~lid~~G~I~~~~~ 208 (227)
-..++|+ ..+|+.= +....|.......+.|+......+ |... -+.|++|.+|+|++...
T Consensus 88 FAq~RfC-~aeGi~n-v~~lSd~r~~~Fge~yGv~I~egpL~gLlA------RaV~V~De~g~V~y~el 148 (158)
T COG2077 88 FAQKRFC-GAEGIEN-VITLSDFRDRAFGENYGVLINEGPLAGLLA------RAVFVLDENGKVTYSEL 148 (158)
T ss_pred hHHhhhh-hhcCccc-ceEhhhhhhhhhhHhhCEEeccccccCeee------eEEEEEcCCCcEEEEEc
Confidence 7888998 5557652 221133333333444433322211 2211 26799999999998743
No 104
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.21 E-value=1.5e-10 Score=81.06 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=62.8
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (227)
+++++|.||++||++|+...|.+.++.++++.+ +.+..++.|. .. +.+ ++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~~--------~~---~~~-~~----------------- 67 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADV--------HQ---SLA-QQ----------------- 67 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECcc--------hH---HHH-HH-----------------
Confidence 567999999999999999999999999998765 8888888762 11 111 11
Q ss_pred chhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 027134 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKD 219 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (227)
| +++++|++++++++.+....+.|..+.+.+.+.
T Consensus 68 ----~-------------~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 101 (103)
T cd03001 68 ----Y-------------GVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSA 101 (103)
T ss_pred ----C-------------CCCccCEEEEECCCCcceeecCCCCCHHHHHHH
Confidence 1 566689999997654566677787776666554
No 105
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.21 E-value=1.4e-10 Score=83.06 Aligned_cols=89 Identities=15% Similarity=0.260 Sum_probs=66.4
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
+++.++|+||++||++|+...|.++++.+++ + .+.+..|++|. .. +..
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~-------~~----~l~------------------- 68 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDE-------DK----EKA------------------- 68 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCc-------CH----HHH-------------------
Confidence 4567889999999999999999999999887 3 38888888773 11 111
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCC---CcEEEecCCCCChhhHHHHHHHHhhh
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE---GNVVERYAPTTSPLSIEKDIKKLLET 226 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~---G~I~~~~~g~~~~~~l~~~i~~lL~~ 226 (227)
..| ++.++|+.++.+.. |++ ++.|..+.+++.+.|+.++..
T Consensus 69 ---~~~-------------~v~~vPt~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~~~ 112 (113)
T cd02975 69 ---EKY-------------GVERVPTTIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIVRV 112 (113)
T ss_pred ---HHc-------------CCCcCCEEEEEeCCeecceE--EEEecCchHHHHHHHHHHHhc
Confidence 122 67778998888643 333 566777788899999988864
No 106
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.20 E-value=1e-10 Score=81.04 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=64.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHh-cCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 166 (227)
++++++|.||++||++|+...+.+.++.+.++ +.++.++.|+.+. ...+. ++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~-~~--------------- 66 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----------NNDLC-SE--------------- 66 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----------hHHHH-Hh---------------
Confidence 45699999999999999999999999999995 3458888888652 11111 11
Q ss_pred CCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHH
Q 027134 167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEK 218 (227)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~ 218 (227)
| +++.+|++++++++|+.+.++.|..+.+++.+
T Consensus 67 ------~-------------~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 67 ------Y-------------GVRGYPTIKLFPNGSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred ------C-------------CCCCCCEEEEEcCCCcccccCCCCcCHHHHHh
Confidence 1 56678999999988788888888776666554
No 107
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.18 E-value=5.8e-11 Score=85.04 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=57.3
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (227)
+++++|+||++||++|+...|.++++.+++++ +.++-|++|. . ... ++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~--------~----~l~-~~----------------- 71 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEK--------A----FLV-NY----------------- 71 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchh--------h----HHH-Hh-----------------
Confidence 58999999999999999999999999999864 7888887652 1 222 12
Q ss_pred chhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 027134 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~ 211 (227)
| ++.++|+.+++ ++|+++.+..|..
T Consensus 72 ----~-------------~i~~~Pt~~~f-~~G~~v~~~~G~~ 96 (113)
T cd02957 72 ----L-------------DIKVLPTLLVY-KNGELIDNIVGFE 96 (113)
T ss_pred ----c-------------CCCcCCEEEEE-ECCEEEEEEecHH
Confidence 1 66778987777 7899999988743
No 108
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.17 E-value=4.8e-10 Score=81.35 Aligned_cols=85 Identities=6% Similarity=-0.053 Sum_probs=55.2
Q ss_pred CCCCEEEEEEecCCCCcchHhHHH-H--HHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 87 YKGKLLLIVNVASQCGLTNSNYTE-L--SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 87 ~~gk~vlv~F~aswC~~C~~~~~~-l--~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
-.||+|+|+|+++||+.|+..-+. + .++.+.+.+ ++.++-|+.|. ..+..+.+. +.
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~-------~~~~~~~~~-~~------------ 71 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREE-------RPDVDKIYM-NA------------ 71 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCc-------CcHHHHHHH-HH------------
Confidence 468999999999999999977653 2 245555543 37777776653 222212221 11
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCC
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~ 210 (227)
....| ++.+.|+++++|++|++++...+.
T Consensus 72 -----~~~~~-------------~~~G~Pt~vfl~~~G~~~~~~~~~ 100 (124)
T cd02955 72 -----AQAMT-------------GQGGWPLNVFLTPDLKPFFGGTYF 100 (124)
T ss_pred -----HHHhc-------------CCCCCCEEEEECCCCCEEeeeeec
Confidence 11112 566789999999999999886443
No 109
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.16 E-value=2.5e-10 Score=81.72 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=58.0
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
++++++|+||++||++|+...|.|.++.+++++ +.++-|++|. .. . .. ++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~-------~~-~---l~-~~---------------- 70 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEK-------AP-F---LV-EK---------------- 70 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEccc-------CH-H---HH-HH----------------
Confidence 467999999999999999999999999999864 8899998773 11 1 11 11
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~ 211 (227)
| ++..+|+.+++ ++|+.+.+..|..
T Consensus 71 -----~-------------~v~~vPt~l~f-k~G~~v~~~~g~~ 95 (113)
T cd02989 71 -----L-------------NIKVLPTVILF-KNGKTVDRIVGFE 95 (113)
T ss_pred -----C-------------CCccCCEEEEE-ECCEEEEEEECcc
Confidence 1 66778997777 6899998876643
No 110
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.16 E-value=4.6e-10 Score=75.33 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=60.0
Q ss_pred EEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCCchh
Q 027134 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAP 171 (227)
Q Consensus 92 vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 171 (227)
.|..||++||++|+...+.++++.++++.+ +.++.|+++. ..+.. ++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~-------~~~~~-----~~-------------------- 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME-------NPQKA-----ME-------------------- 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc-------CHHHH-----HH--------------------
Confidence 466799999999999999999999998754 8888888763 22111 11
Q ss_pred hHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHh
Q 027134 172 LYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL 224 (227)
| ++.++|+.++ +|+. ++.|..+++++.+.|+++|
T Consensus 49 -~-------------~v~~vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 49 -Y-------------GIMAVPAIVI---NGDV--EFIGAPTKEELVEAIKKRL 82 (82)
T ss_pred -c-------------CCccCCEEEE---CCEE--EEecCCCHHHHHHHHHhhC
Confidence 1 6677899765 5664 5668778888888887764
No 111
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.13 E-value=2.2e-10 Score=80.31 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=38.5
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhc-CCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~D 131 (227)
.++.++|+||++||++|+...|.+.++.+.+++ .++.+..|+.+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 368999999999999999999999999999987 35778877765
No 112
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.10 E-value=3.8e-10 Score=86.95 Aligned_cols=73 Identities=8% Similarity=0.089 Sum_probs=57.1
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (227)
+++|||+||++||++|+...|.|.++.++|.. +.++-|++|. . ... .+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d~--------~----~l~-~~----------------- 130 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRASA--------T----GAS-DE----------------- 130 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEeccc--------h----hhH-Hh-----------------
Confidence 45999999999999999999999999999964 8898888762 1 111 12
Q ss_pred chhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 027134 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~ 211 (227)
| ++..+|+.+++ ++|+++.+.+|..
T Consensus 131 ----f-------------~v~~vPTllly-k~G~~v~~~vG~~ 155 (175)
T cd02987 131 ----F-------------DTDALPALLVY-KGGELIGNFVRVT 155 (175)
T ss_pred ----C-------------CCCCCCEEEEE-ECCEEEEEEechH
Confidence 1 56668997777 7899999877644
No 113
>PTZ00102 disulphide isomerase; Provisional
Probab=99.10 E-value=2.3e-10 Score=101.51 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=79.3
Q ss_pred EEecCCCCeeecC-CCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcC-CcEEEEEeCCCCCCCCCCCHHHHHHHHHh
Q 027134 73 SVKDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACT 150 (227)
Q Consensus 73 ~l~~~~G~~v~l~-~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~-~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~ 150 (227)
.++...|+.+.-. .-.||.++|+||++||++|+...|.++++.+.+++. .+.+..|+.|. +.
T Consensus 358 ~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~-------~~--------- 421 (477)
T PTZ00102 358 PVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA-------NE--------- 421 (477)
T ss_pred CeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC-------Cc---------
Confidence 3555566655533 235899999999999999999999999999998864 36777777652 00
Q ss_pred hCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 151 RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 151 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
. ....| +++++|+.++++++|++..++.|..+.+.+.+.|++...
T Consensus 422 ---~--------------~~~~~-------------~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 422 ---T--------------PLEEF-------------SWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred ---c--------------chhcC-------------CCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 0 00111 566789999999888876788998888889998888764
No 114
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.5e-09 Score=78.67 Aligned_cols=148 Identities=17% Similarity=0.279 Sum_probs=103.2
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCC-CEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCH
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN 141 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~g-k~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~ 141 (227)
..|+.+|+|+..+..|+ +.+.||.| .|.+++=. +...|.|..|+..+..+..+|.++|+..++.|+| +.
T Consensus 7 ~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d--------~v 77 (224)
T KOG0854|consen 7 RLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD--------DV 77 (224)
T ss_pred cccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh--------hH
Confidence 67999999999888887 88999866 57766444 7788999999999999999999999999999999 45
Q ss_pred HHHHHHHH------hh--CCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCC---
Q 027134 142 EQIQEFAC------TR--FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT--- 210 (227)
Q Consensus 142 ~~~~~~~~------~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~--- 210 (227)
+..+.|++ +. +..+||++ .|.+.+ ..-++..+.....+.-|.+ ...-..|+||++.+|+-.+.-.
T Consensus 78 esH~~Wi~DIks~~~~~~~~~~yPII--aD~~re-la~~l~MlD~~e~~~~~~~-~T~Ravfvi~pdkKirLs~lYP~tt 153 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNHSVPYPII--ADPNRE-LAFLLNMLDPEEKKNIGDG-KTVRAVFVIDPDKKIRLSFLYPSTT 153 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCee--cCCchh-hhhhhcccCHhHcCCCCCC-ceEEEEEEECCCceEEEEEEccccc
Confidence 54444441 12 23788888 454444 4555555543322222212 2345789999999998764321
Q ss_pred -CChhhHHHHHHHHh
Q 027134 211 -TSPLSIEKDIKKLL 224 (227)
Q Consensus 211 -~~~~~l~~~i~~lL 224 (227)
-+.+++.+.|+.|.
T Consensus 154 GRN~dEiLRvidsLq 168 (224)
T KOG0854|consen 154 GRNFDEILRVIDSLQ 168 (224)
T ss_pred CcCHHHHHHHHHHHh
Confidence 13556667776653
No 115
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6.7e-10 Score=87.62 Aligned_cols=92 Identities=20% Similarity=0.249 Sum_probs=71.7
Q ss_pred cCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 84 l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
++.-.+|.|+|+|+|+||+||+...|.+..+..+|+. .+++-|.+|. .+..+
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~-----------c~~ta--------------- 67 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDE-----------CRGTA--------------- 67 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHH-----------hhchh---------------
Confidence 4445679999999999999999999999999999965 8999998772 12111
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
.-+ ++..+||.++. ++|+-+.++.|.. +..|++.+++...
T Consensus 68 -------a~~-------------gV~amPTFiff-~ng~kid~~qGAd-~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 68 -------ATN-------------GVNAMPTFIFF-RNGVKIDQIQGAD-ASGLEEKVAKYAS 107 (288)
T ss_pred -------hhc-------------CcccCceEEEE-ecCeEeeeecCCC-HHHHHHHHHHHhc
Confidence 111 78889995555 8999999988864 5568888888764
No 116
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.07 E-value=1.7e-09 Score=73.32 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=62.6
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (227)
+++++|.||++||+.|....+.++++.++ ..++.++.|+.+. .. ++. +.
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~-------~~----~~~-~~----------------- 58 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE-------NP----ELA-EE----------------- 58 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC-------Ch----hHH-Hh-----------------
Confidence 37999999999999999999999999888 3459999998762 11 111 11
Q ss_pred chhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 027134 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i 220 (227)
| ++.++|+.+++ ++|+++..+.|..+.+.+.+.|
T Consensus 59 ----~-------------~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 59 ----Y-------------GVRSIPTFLFF-KNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred ----c-------------CcccccEEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence 1 55668998888 5688888888877766666554
No 117
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.06 E-value=2.4e-10 Score=82.13 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=40.1
Q ss_pred CCCEEEEEEec-------CCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 88 KGKLLLIVNVA-------SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 88 ~gk~vlv~F~a-------swC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
+|++++|+||| +||++|+...|.++++.++++++ +.++.|++|.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~-v~fv~Vdvd~ 70 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED-CVFIYCDVGD 70 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC-CEEEEEEcCC
Confidence 58899999999 99999999999999999999854 9999999873
No 118
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.06 E-value=8.2e-10 Score=86.23 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=56.7
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (227)
+++|||+||++||++|+...|.|.++.++|.. +.|+-|++|. . . .+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad~-----------~---~-~~----------------- 147 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIISTQ-----------C---I-PN----------------- 147 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhHH-----------h---H-hh-----------------
Confidence 46999999999999999999999999999964 8888887641 0 1 11
Q ss_pred chhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 027134 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~ 211 (227)
| ++..+|+.+++ ++|+++.+++|..
T Consensus 148 ----~-------------~i~~lPTlliy-k~G~~v~~ivG~~ 172 (192)
T cd02988 148 ----Y-------------PDKNLPTILVY-RNGDIVKQFIGLL 172 (192)
T ss_pred ----C-------------CCCCCCEEEEE-ECCEEEEEEeCch
Confidence 1 55668987777 8999999988743
No 119
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.04 E-value=1.7e-09 Score=94.56 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=66.6
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
+++++||+||++||++|+...|.++++.++|+++++.|+.|++|. ... +.+.++
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~-------~~~---~~~~~~---------------- 423 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG-------DQK---EFAKQE---------------- 423 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC-------Ccc---HHHHHH----------------
Confidence 688999999999999999999999999999988779999999873 110 111011
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecC-CCCChhhHHHHHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA-PTTSPLSIEKDIKKL 223 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~-g~~~~~~l~~~i~~l 223 (227)
| +|.++|+++++.+.+.-...|. |..+.+.|...|+.+
T Consensus 424 -----~-------------~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 424 -----L-------------QLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred -----c-------------CCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 1 5666899888855432223454 456777787777654
No 120
>PLN02309 5'-adenylylsulfate reductase
Probab=99.00 E-value=3.3e-09 Score=92.67 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=67.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
++|++||+||++||++|+...|.+.++.++|+..++.|..|+.|. .. .+.+.++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-------~~---~~la~~~---------------- 417 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-------DQ---KEFAKQE---------------- 417 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------cc---hHHHHhh----------------
Confidence 588999999999999999999999999999988789999998872 11 1112111
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCC-CCChhhHHHHHHHH
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP-TTSPLSIEKDIKKL 223 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g-~~~~~~l~~~i~~l 223 (227)
| +|.+.|+++++.+...-...|.| .-+.+.|...|+.+
T Consensus 418 -----~-------------~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 418 -----L-------------QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred -----C-------------CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 1 66678999998654433334543 45677788887765
No 121
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.95 E-value=5.6e-09 Score=74.84 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=36.4
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcC--CcEEEEEeCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCN 131 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~D 131 (227)
+++++|+||++||++|+...|.++++.+++++. .+.+..|+.+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 479999999999999999999999999998752 2677777654
No 122
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.93 E-value=2.1e-08 Score=71.86 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCCCEEEEEEecCCCCcchHhHHH-H--HHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 87 YKGKLLLIVNVASQCGLTNSNYTE-L--SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 87 ~~gk~vlv~F~aswC~~C~~~~~~-l--~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
-++|+++|+|+++||+.|...... + .++.+.+++. +.++.++++ + .+..++.
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~-~v~~~~d~~--------~-~e~~~~~--------------- 69 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN-FIFWQCDID--------S-SEGQRFL--------------- 69 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC-EEEEEecCC--------C-ccHHHHH---------------
Confidence 468999999999999999876553 2 2355555443 555555443 1 1122222
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECC-CCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK-EGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~-~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
..| ++..+|+.+++|+ +|+++.+..|..+++++.+.|++.+.
T Consensus 70 -------~~~-------------~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 70 -------QSY-------------KVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred -------HHh-------------CccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 112 4556899999999 89999999999999999999988765
No 123
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.93 E-value=3e-09 Score=93.74 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=69.4
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCC--cEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (227)
++++++|.|||+||++|+...|.+.++.+.+++.+ +.++.|+.+. . .+.+ ++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~-------------- 70 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------E----KDLA-QK-------------- 70 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------c----HHHH-Hh--------------
Confidence 57799999999999999999999999999988655 7888887663 1 1111 11
Q ss_pred CCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcE-EEecCCCCChhhHHHHHHHHhh
Q 027134 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
| ++.++|+.+++ ++|+. +..+.|..+.+.+.+.+.+.+.
T Consensus 71 -------~-------------~i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 71 -------Y-------------GVSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred -------C-------------CCccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 1 66668987777 56776 6778888888888888877653
No 124
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.91 E-value=8e-09 Score=72.32 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=64.4
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
.|+++++.|+++||++|....+.+.++.++|+++ +.++.|+.|. ..+++ +.+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~-----------~~~~~-~~~--------------- 62 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD-----------FGRHL-EYF--------------- 62 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh-----------hHHHH-HHc---------------
Confidence 3789999999999999999999999999999876 8898888662 11222 232
Q ss_pred CchhhHHHhhhcCCCCCCCccc--cceeEEEECCC-CcEEEecCCCCChhhHHHHHHHHh
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIK--WNFSKFLVDKE-GNVVERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~--~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~i~~lL 224 (227)
++. .+|+.++++.+ |+......+..+.+.+.+.|++++
T Consensus 63 -------------------~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 63 -------------------GLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL 103 (103)
T ss_pred -------------------CCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhhC
Confidence 233 47888888663 554444444446777888777653
No 125
>PTZ00062 glutaredoxin; Provisional
Probab=98.87 E-value=1.4e-08 Score=79.75 Aligned_cols=76 Identities=8% Similarity=-0.018 Sum_probs=60.1
Q ss_pred CEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCCc
Q 027134 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNA 169 (227)
Q Consensus 90 k~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 169 (227)
..+|++|||+|||+|+...+.|.++.++|++ +.++.|+.|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d-------------------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA-------------------------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc--------------------------------------
Confidence 4688999999999999999999999999975 777777521
Q ss_pred hhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 170 APLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
| +|.++|+.+++ ++|+++.+..|.. +.++.+.+.++
T Consensus 58 ---~-------------~V~~vPtfv~~-~~g~~i~r~~G~~-~~~~~~~~~~~ 93 (204)
T PTZ00062 58 ---D-------------ANNEYGVFEFY-QNSQLINSLEGCN-TSTLVSFIRGW 93 (204)
T ss_pred ---c-------------CcccceEEEEE-ECCEEEeeeeCCC-HHHHHHHHHHH
Confidence 1 67778997777 7999999998865 44566555544
No 126
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.87 E-value=1.7e-08 Score=66.95 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=30.2
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEe
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs 129 (227)
.|.||++|||+|+...|.++++.++++.+ +.++-|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 37899999999999999999999998754 6665553
No 127
>PTZ00102 disulphide isomerase; Provisional
Probab=98.84 E-value=1.1e-08 Score=90.72 Aligned_cols=90 Identities=20% Similarity=0.266 Sum_probs=67.1
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCC--cEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (227)
+++.++|.||++||++|+...|.+.++.+.+++.+ +.+..|+.+. .. +.+ ++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-------~~----~l~-~~-------------- 101 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-------EM----ELA-QE-------------- 101 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-------CH----HHH-Hh--------------
Confidence 57899999999999999999999999998887543 6677776542 11 111 11
Q ss_pred CCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
| ++.++|+.++++. |+.+ .+.|..+.+.+.+.+++++.
T Consensus 102 -------~-------------~i~~~Pt~~~~~~-g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 102 -------F-------------GVRGYPTIKFFNK-GNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred -------c-------------CCCcccEEEEEEC-CceE-EecCCCCHHHHHHHHHHhhC
Confidence 1 6667899999975 4544 77888888888888887754
No 128
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.80 E-value=3.3e-08 Score=78.34 Aligned_cols=140 Identities=15% Similarity=0.209 Sum_probs=98.0
Q ss_pred ccCCCccCCeEEecCCCCe-eecCCCC--CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCC----
Q 027134 63 SQSKTSVHDFSVKDAKGQD-VDLSIYK--GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGA---- 135 (227)
Q Consensus 63 ~~~g~~~p~f~l~~~~G~~-v~l~~~~--gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~---- 135 (227)
+..|..+||+++.+.+|+. .++-||. ++++||+|.+-.||+=+..+..++++.++|.+. +.++.|-+.+...
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDgW 151 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDGW 151 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCCc
Confidence 4789999999999999998 9999984 689999999777999999999999999999985 5666665553211
Q ss_pred ---------CCCCCHH---HHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccce-eEEEECCCCc
Q 027134 136 ---------QEPGDNE---QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNF-SKFLVDKEGN 202 (227)
Q Consensus 136 ---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P-~~~lid~~G~ 202 (227)
+.+.+.+ ..++.+. ++....|++ .|.-.+.+...|.. .| +.||| ++|+
T Consensus 152 ~~~~~~~~i~qh~sledR~~aA~~l~-~~~~~~pi~--vD~mdN~~~~~YgA---------------~PeRlyIi-~~gk 212 (237)
T PF00837_consen 152 AFGNNPYEIPQHRSLEDRLRAAKLLK-EEFPQCPIV--VDTMDNNFNKAYGA---------------LPERLYII-QDGK 212 (237)
T ss_pred cCCCCceeecCCCCHHHHHHHHHHHH-hhCCCCCEE--EEccCCHHHHHhCC---------------CcceEEEE-ECCE
Confidence 1222222 2233332 334677877 56655556666622 23 56777 6999
Q ss_pred EEEecCC---CCChhhHHHHHHH
Q 027134 203 VVERYAP---TTSPLSIEKDIKK 222 (227)
Q Consensus 203 I~~~~~g---~~~~~~l~~~i~~ 222 (227)
|++.... ...++++++.+++
T Consensus 213 v~Y~Gg~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 213 VVYKGGPGPFGYSPEELREWLEK 235 (237)
T ss_pred EEEeCCCCCCcCCHHHHHHHHHh
Confidence 9987432 1235677777765
No 129
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.76 E-value=5.4e-08 Score=77.57 Aligned_cols=92 Identities=15% Similarity=0.255 Sum_probs=65.0
Q ss_pred CCCCEEEEEEec---CCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 87 YKGKLLLIVNVA---SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 87 ~~gk~vlv~F~a---swC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
.++...++.|.+ +||++|+...|.++++.+++++ +.+..+++|. +.. .+.
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~------~~~---~~l---------------- 69 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT------PED---KEE---------------- 69 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC------ccc---HHH----------------
Confidence 344455666777 9999999999999999999853 6666666652 011 111
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEE-EecCCCCChhhHHHHHHHHhh
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV-ERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~-~~~~g~~~~~~l~~~i~~lL~ 225 (227)
...| ++.++|+.++++ +|+.+ .++.|..+.+++.+.|+.+++
T Consensus 70 ------~~~~-------------~V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 70 ------AEKY-------------GVERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred ------HHHc-------------CCCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHHHH
Confidence 1122 777799988875 67776 488898888888888887753
No 130
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.74 E-value=5.1e-08 Score=78.99 Aligned_cols=104 Identities=11% Similarity=0.165 Sum_probs=76.9
Q ss_pred cCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 84 l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
+..+.+++-|+.|+.+.|+.|....|.|+.+.++| |+.|+.||+|- .....||... .
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG------------------~~~p~fp~~~--~ 201 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDG------------------TLIPGLPNSR--S 201 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC------------------CCCCCCCCcc--C
Confidence 45566789999999999999999999999999997 49999999983 1111233321 1
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCC-CcEEEecCCCCChhhHHHHHHHHhh
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
+.. ....+ ++..+|++||++++ ++..-...|..+.++|.+.|..++.
T Consensus 202 -d~g-qa~~l-------------~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 202 -DSG-QAQHL-------------GVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred -ChH-HHHhc-------------CCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 111 11111 77889999999998 6666667888899999888877654
No 131
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.74 E-value=5.8e-08 Score=85.59 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=68.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhc-C-CcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-Q-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~-~-~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (227)
.++.++|.||++||++|+...|.+.++.+.+++ . ++.+..|+++. + +
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~-------n----------~-------------- 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA-------N----------D-------------- 411 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC-------C----------c--------------
Confidence 478999999999999999999999999999987 2 58888888752 0 0
Q ss_pred CCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcE-EEecCCCCChhhHHHHHHHHh
Q 027134 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~i~~lL 224 (227)
... + ++..+|+.+++.+.++. ...+.|..+.+.+.+.|++..
T Consensus 412 ---~~~-~-------------~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 412 ---VPP-F-------------EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred ---cCC-C-------------CccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 000 1 56678999999766552 356778777878888887654
No 132
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.74 E-value=4.4e-08 Score=77.89 Aligned_cols=99 Identities=23% Similarity=0.232 Sum_probs=71.9
Q ss_pred cCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 84 l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
+....+++-|+.|+.+.|+.|....|.|+.+.++| |+.|+.||+|- ..-..||... .
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG------------------~~~~~fp~~~--~ 171 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDG------------------RPIPSFPNPR--P 171 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCC------------------CCCcCCCCCC--C
Confidence 55567889999999999999999999999999998 59999999983 1011233220 0
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCC-cEEEecCCCCChhhHHHHH
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG-NVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G-~I~~~~~g~~~~~~l~~~i 220 (227)
+ ..+.+.+ ++..+|++||+++++ ++.-...|..+.++|.+.|
T Consensus 172 -~----~g~~~~l----------~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 172 -D----PGQAKRL----------GVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred -C----HHHHHHc----------CCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 1 1121122 788899999999988 5666677888887776654
No 133
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.67 E-value=1e-07 Score=76.91 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=76.8
Q ss_pred cCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 84 l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
+.++.+++-|++|+.+.||.|....|.|+.+.++| |+.|+.||+|- .....||...
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG------------------~~~p~fp~~~--- 193 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDG------------------VINPLLPDSR--- 193 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC------------------CCCCCCCCCc---
Confidence 45566789999999999999999999999999997 49999999982 1111233220
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCC-cEEEecCCCCChhhHHHHHHHHhh
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG-NVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G-~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
.+...+ ..+ ++..+|++||++++. +..-...|..+.++|.+.|..+..
T Consensus 194 ~d~gqa-~~l-------------~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 194 TDQGQA-QRL-------------GVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred cChhHH-Hhc-------------CCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 111101 111 778899999999975 777777899899999988877654
No 134
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.67 E-value=1.1e-07 Score=69.23 Aligned_cols=76 Identities=9% Similarity=0.167 Sum_probs=49.1
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHH---HHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeecc
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELS---QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~---~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (227)
.||+|+|+|++.||++|+..-...- ++.+..++ ++.+|.+..|. + + . +.. .
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~-------t-d--------~-~~~--------~ 75 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHET-------T-D--------K-NLS--------P 75 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEecc-------C-C--------C-CcC--------c
Confidence 6899999999999999998776542 34444433 35444444331 1 0 0 000 0
Q ss_pred CCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 027134 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~ 211 (227)
+ + .++|+++++|++|+++.+..|..
T Consensus 76 ~---------------------g-~~vPtivFld~~g~vi~~i~Gy~ 100 (130)
T cd02960 76 D---------------------G-QYVPRIMFVDPSLTVRADITGRY 100 (130)
T ss_pred c---------------------C-cccCeEEEECCCCCCcccccccc
Confidence 0 1 23799999999999999877743
No 135
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.61 E-value=2.9e-07 Score=73.33 Aligned_cols=42 Identities=10% Similarity=-0.031 Sum_probs=32.1
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
.+..+|+.||++||++|+...+.++++..++. ++.+.-|..|
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~ 173 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN 173 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC
Confidence 44456666999999999998898888887743 3777666655
No 136
>PHA02125 thioredoxin-like protein
Probab=98.58 E-value=4.2e-07 Score=60.05 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.3
Q ss_pred EEEEecCCCCcchHhHHHHHHH
Q 027134 93 LIVNVASQCGLTNSNYTELSQL 114 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l 114 (227)
++.||++||++|+...|.|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 6889999999999998988654
No 137
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.50 E-value=8.3e-08 Score=70.16 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=47.9
Q ss_pred CCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeecc
Q 027134 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (227)
Q Consensus 85 ~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (227)
+....+..++.|..+|||.|...+|.|.++.+..++ +.+=-+..|. -.+.. +. |..
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd~-----------~~el~-~~----~lt------ 92 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRDE-----------NKELM-DQ----YLT------ 92 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HHH-----------HHHHT-TT----TTT------
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEecC-----------ChhHH-HH----HHh------
Confidence 345567888889999999999999999999998653 6666665441 12211 11 100
Q ss_pred CCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCC
Q 027134 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (227)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~ 210 (227)
.+...+|+.+++|.+|+.+.++...
T Consensus 93 ---------------------~g~~~IP~~I~~d~~~~~lg~wger 117 (129)
T PF14595_consen 93 ---------------------NGGRSIPTFIFLDKDGKELGRWGER 117 (129)
T ss_dssp ----------------------SS--SSEEEEE-TT--EEEEEESS
T ss_pred ---------------------CCCeecCEEEEEcCCCCEeEEEcCC
Confidence 0566799999999999999998754
No 138
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.49 E-value=1.2e-06 Score=59.84 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=38.1
Q ss_pred CCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 85 ~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
.++++.+.+..|+++||++|+...+.++++.+++++ +.+.-+.+|
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~ 52 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGA 52 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhH
Confidence 456778888889999999999999999999988753 888888766
No 139
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.46 E-value=1.2e-06 Score=56.24 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=30.9
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+..|+++|||+|+...+.|+++.+.+. ++.+..|++|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 677999999999999999999977643 4888888876
No 140
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=9.1e-07 Score=77.44 Aligned_cols=90 Identities=18% Similarity=0.281 Sum_probs=65.6
Q ss_pred CCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCC--cEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeecc
Q 027134 87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (227)
Q Consensus 87 ~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (227)
.....++|.|||+||++|+..+|++.+..+.++..+ +.+.-|.. +.+ ...+ .+
T Consensus 40 ~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa---------t~~--~~~~-~~------------- 94 (493)
T KOG0190|consen 40 NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA---------TEE--SDLA-SK------------- 94 (493)
T ss_pred ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec---------chh--hhhH-hh-------------
Confidence 345689999999999999999999999999999874 55555532 211 2222 22
Q ss_pred CCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
| ++++.||+-+. ++|+....|.|....+.+...+.+.
T Consensus 95 --------y-------------~v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 95 --------Y-------------EVRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred --------h-------------cCCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHhc
Confidence 2 66777886555 8899877788887787777777653
No 141
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.38 E-value=2.1e-06 Score=57.65 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=33.6
Q ss_pred CCCEEEEEEecCCCCcchHhHHHH---HHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~D 131 (227)
.||+++|+|++.||+.|+..-..+ .++.+.+.+ ++..+.|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcC
Confidence 589999999999999999877766 345554554 4888888876
No 142
>smart00594 UAS UAS domain.
Probab=98.35 E-value=4.4e-06 Score=60.52 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=60.6
Q ss_pred CCCCEEEEEEecCCCCcchHhHHHH-H--HHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 87 YKGKLLLIVNVASQCGLTNSNYTEL-S--QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 87 ~~gk~vlv~F~aswC~~C~~~~~~l-~--~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
-.+|.++|+|++.||+.|....... . ++.+.+++ ++.++.++++ +.+. .++.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~--------~~eg-~~l~--------------- 79 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVD--------TSEG-QRVS--------------- 79 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCC--------ChhH-HHHH---------------
Confidence 3689999999999999998766542 2 34444443 4666666654 2221 2222
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCC-----cEEEecCCCCChhhHHHHH
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG-----NVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G-----~I~~~~~g~~~~~~l~~~i 220 (227)
..| ++.+.|+..++|++| .++.+..|..+++++...+
T Consensus 80 -------~~~-------------~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 80 -------QFY-------------KLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred -------Hhc-------------CcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 112 566689999999998 5778888988888776654
No 143
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.33 E-value=1.1e-06 Score=61.60 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=41.7
Q ss_pred eecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 82 v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
.....++++++++.||++||++|+..+|.+.++.+++.. .+.++.++..
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 344444589999999999999999999999999999987 4888888874
No 144
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.21 E-value=3.5e-06 Score=74.71 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=70.5
Q ss_pred CCCCCCEEEEEEecCCCCcchHhHHH-HHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 85 SIYKGKLLLIVNVASQCGLTNSNYTE-LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 85 ~~~~gk~vlv~F~aswC~~C~~~~~~-l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
++-++|+|+|+|+|.||-.|+..-+. +.+.+...+-.|++.+-+++-. ++.+..+.+ +++
T Consensus 470 a~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~-------~~p~~~~lL-k~~----------- 530 (569)
T COG4232 470 AEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA-------NDPAITALL-KRL----------- 530 (569)
T ss_pred HhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC-------CCHHHHHHH-HHc-----------
Confidence 33456799999999999999966554 4455556555668888877653 445555555 231
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
++.+.|++++++++|+-.....|..+.+.+++.+++.
T Consensus 531 -----------------------~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 531 -----------------------GVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -----------------------CCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 5556799999999998776788888888888888764
No 145
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.21 E-value=8.7e-06 Score=50.40 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=32.7
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
++.||++||+.|....+.+.++ ++...++.++.++.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC
Confidence 5789999999999999999998 4455679999999874
No 146
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.16 E-value=0.00016 Score=53.93 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=86.1
Q ss_pred cCCCccCCeEEecC-----CCC-----eeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHH-HhcCCcEEEEE-eCC
Q 027134 64 QSKTSVHDFSVKDA-----KGQ-----DVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDK-YKNQGLEILAF-PCN 131 (227)
Q Consensus 64 ~~g~~~p~f~l~~~-----~G~-----~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~-~~~~~~~vl~V-s~D 131 (227)
..|.++|..++.|- +|. ..+.+.+.||+.+|..-|-.-..-....|-+..+.+. |+....+..+| |.|
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 45677777776653 344 4445667899988877655433333334445555544 55555666665 665
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCcccee-eeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCC
Q 027134 132 QFGAQEPGDNEQIQEFACTRFKAEFPIFD-KVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (227)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~ 210 (227)
+ .-..+..-++..+ ++..-.||+-+ ..|.++. ....|+.-. ..-..+++|++|+|++...|.
T Consensus 82 D---Ai~gt~~fVrss~-e~~kk~~p~s~~vlD~~G~-~~~aW~L~~------------~~SaiiVlDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 82 D---AIWGTGGFVRSSA-EDSKKEFPWSQFVLDSNGV-VRKAWQLQE------------ESSAIIVLDKQGKVQFVKEGA 144 (160)
T ss_pred c---ccccchHHHHHHH-HHhhhhCCCcEEEEcCCCc-eeccccCCC------------CCceEEEEcCCccEEEEECCC
Confidence 3 3344555666666 33344455433 2566664 444442211 012678999999999999999
Q ss_pred CChhhHHHHHHH
Q 027134 211 TSPLSIEKDIKK 222 (227)
Q Consensus 211 ~~~~~l~~~i~~ 222 (227)
.+++++.+.|+-
T Consensus 145 Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 145 LSPAEVQQVIAL 156 (160)
T ss_pred CCHHHHHHHHHH
Confidence 999888877653
No 147
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=9.3e-06 Score=71.23 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=37.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcC-CcEEEEEeC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPC 130 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~-~~~vl~Vs~ 130 (227)
.+|-|||.|+|+||++|+...|.+++|.+.|++. ++.|.-+..
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDa 426 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDA 426 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecc
Confidence 5889999999999999999999999999999985 466665543
No 148
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.09 E-value=3.6e-05 Score=49.76 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=25.8
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
+..|+++|||+|+...+.|.+ .++.+..++++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEK 34 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence 456889999999988776654 468888888873
No 149
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=7.5e-05 Score=54.89 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=83.8
Q ss_pred cCCCccCCeEEecCC------C-CeeecCC-CCCCEEEEEEe-cCCCCcchH-hHHHHHHHHHHHhcCCc-EEEEEeCCC
Q 027134 64 QSKTSVHDFSVKDAK------G-QDVDLSI-YKGKLLLIVNV-ASQCGLTNS-NYTELSQLYDKYKNQGL-EILAFPCNQ 132 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~------G-~~v~l~~-~~gk~vlv~F~-aswC~~C~~-~~~~l~~l~~~~~~~~~-~vl~Vs~D~ 132 (227)
.+|+.+|..+++... | ..++..+ ++||.|+|.=- +...|.|-. ++|...+++++++.+|+ .|+.||++
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN- 82 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN- 82 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC-
Confidence 678999998887652 2 3455555 58887766322 668889975 99999999999999986 67777877
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecC
Q 027134 133 FGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA 208 (227)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~ 208 (227)
+.-.+..|. +..+..=.+.-..|.+++.... ....... +..|.+++..-...|+ +||+|.+.++
T Consensus 83 -------D~FVm~AWa-k~~g~~~~I~fi~Dg~geFTk~-~Gm~~d~--~~~g~G~RS~RYsmvV-~nGvV~~~~i 146 (165)
T COG0678 83 -------DAFVMNAWA-KSQGGEGNIKFIPDGNGEFTKA-MGMLVDK--SDLGFGVRSWRYSMVV-ENGVVEKLFI 146 (165)
T ss_pred -------cHHHHHHHH-HhcCCCccEEEecCCCchhhhh-cCceeec--ccCCcceeeeeEEEEE-eCCeEEEEEe
Confidence 677778887 4445442222225555553222 2221111 1222245555566666 6899987765
No 150
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=5.5e-05 Score=65.53 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=36.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
.++..+|.||++||++|.+..|...++...+++. +.+..|..+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~~ 88 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDCD 88 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCch
Confidence 4679999999999999999999999999999874 667766554
No 151
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.94 E-value=0.00011 Score=53.60 Aligned_cols=89 Identities=10% Similarity=0.077 Sum_probs=66.0
Q ss_pred EEEEEEe--cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCC
Q 027134 91 LLLIVNV--ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168 (227)
Q Consensus 91 ~vlv~F~--aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 168 (227)
..+|.|- ..-+|-+....--|.++.++|.+..+.+..|++|. ..++
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--------~~~L------------------------ 83 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--------SEAI------------------------ 83 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--------CHHH------------------------
Confidence 4444443 22556677777789999999975459999999884 1111
Q ss_pred chhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhhh
Q 027134 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 226 (227)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~~ 226 (227)
...| +|.++|+.+++ ++|+++.+..|..+++++.+.|+++|.+
T Consensus 84 -A~~f-------------gV~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 84 -GDRF-------------GVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred -HHHc-------------CCccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 1122 77789997777 8999999999999999999999998853
No 152
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.83 E-value=8.8e-05 Score=53.18 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=64.6
Q ss_pred CCCCEEEEEEecC----CCCcchHhH--HHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCcccee
Q 027134 87 YKGKLLLIVNVAS----QCGLTNSNY--TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFD 160 (227)
Q Consensus 87 ~~gk~vlv~F~as----wC~~C~~~~--~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (227)
-.+|.++|+++.. ||..|+..+ |.+.++.+ + ++.+++.++. +.+. .+.
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~-~fv~w~~dv~--------~~eg-~~l------------- 68 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T-RMLFWACSVA--------KPEG-YRV------------- 68 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c-CEEEEEEecC--------ChHH-HHH-------------
Confidence 4689999999988 788897666 34444442 2 4777777765 2221 111
Q ss_pred eeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEE---CCCCcEEEecCCCCChhhHHHHHHHHhhh
Q 027134 161 KVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLV---DKEGNVVERYAPTTSPLSIEKDIKKLLET 226 (227)
Q Consensus 161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~li---d~~G~I~~~~~g~~~~~~l~~~i~~lL~~ 226 (227)
...+ ++...|+..++ +.+.+++.+..|..+++++...|+..+++
T Consensus 69 ---------a~~l-------------~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 69 ---------SQAL-------------RERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred ---------HHHh-------------CCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1111 55668999999 66778899999999999999999988764
No 153
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00033 Score=51.98 Aligned_cols=102 Identities=13% Similarity=0.185 Sum_probs=65.7
Q ss_pred CCCCEEEEEEecCCCCcchHhHH---HHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 87 YKGKLLLIVNVASQCGLTNSNYT---ELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 87 ~~gk~vlv~F~aswC~~C~~~~~---~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
-.||+.++.|-...|+.|-..-. .-.++++-++.. +.++-+++.. . + ...|.. .+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~-------s----------k-pv~f~~---g~ 97 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISY-------S----------K-PVLFKV---GD 97 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEecc-------C----------c-ceEeec---Cc
Confidence 47899999999999999965443 344566666554 7777776542 0 0 001100 11
Q ss_pred c-CCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 027134 164 V-NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 220 (227)
Q Consensus 164 ~-~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i 220 (227)
. .......+..-+ +++++|+.++.|++|+.+....|..+++++...+
T Consensus 98 kee~~s~~ELa~kf----------~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vl 145 (182)
T COG2143 98 KEEKMSTEELAQKF----------AVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVL 145 (182)
T ss_pred eeeeecHHHHHHHh----------ccccCceEEEEcCCCCEEEecCCCCCHHHHHHHH
Confidence 1 011112343333 8899999999999999999999999998755444
No 154
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00027 Score=52.33 Aligned_cols=133 Identities=19% Similarity=0.215 Sum_probs=80.6
Q ss_pred cCCCccCC--eE-EecCC----CCeeecCCC-CCCEEEEEEe--cCCCCc-chHhHHHHHHHHHHHhcCCc-EEEEEeCC
Q 027134 64 QSKTSVHD--FS-VKDAK----GQDVDLSIY-KGKLLLIVNV--ASQCGL-TNSNYTELSQLYDKYKNQGL-EILAFPCN 131 (227)
Q Consensus 64 ~~g~~~p~--f~-l~~~~----G~~v~l~~~-~gk~vlv~F~--aswC~~-C~~~~~~l~~l~~~~~~~~~-~vl~Vs~D 131 (227)
.+|+..|+ .+ +.+.. +.+++++++ +||.+|| |. +..-|. |..+.|.+.+-.++++.+|+ +|+.||+|
T Consensus 10 ~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn 88 (171)
T KOG0541|consen 10 AVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN 88 (171)
T ss_pred cccCccccccchhhccCccccccceEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence 78999999 44 22221 227888885 8987766 55 557777 57899999999999999987 77888888
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCC
Q 027134 132 QFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT 210 (227)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~ 210 (227)
++-.++.|. +.++.+=.+--..|..+.....+---+.. ++..+ +++.--...++ .||++.+..+..
T Consensus 89 --------DpFv~~aW~-k~~g~~~~V~f~aD~~g~ftk~lgleld~--~d~~~-g~RS~R~a~vv-engkV~~~nvE~ 154 (171)
T KOG0541|consen 89 --------DPFVMKAWA-KSLGANDHVKFVADPAGEFTKSLGLELDL--SDKLL-GVRSRRYALVV-ENGKVTVVNVEE 154 (171)
T ss_pred --------cHHHHHHHH-hhcCccceEEEEecCCCceeeeccceeee--ccccC-ccccccEEEEE-eCCeEEEEEecc
Confidence 677777777 56665433222255555533322111110 00100 22221233444 689998876643
No 155
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.72 E-value=0.00048 Score=56.04 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=76.2
Q ss_pred cCCCccCCeEEecCCCCeeecCC-CCCCEEEEEEecC-CCCcchHhHHHHHHHHHHHhc-C--CcEEEEEeCCCCCCCCC
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSI-YKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKN-Q--GLEILAFPCNQFGAQEP 138 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~-~~gk~vlv~F~as-wC~~C~~~~~~l~~l~~~~~~-~--~~~vl~Vs~D~~~~~~~ 138 (227)
.....+|+|..++++|+.+++.+ ++||+.||..+.+ |-..|....-. ...++|.. . .++++-||+-
T Consensus 96 ~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~------- 166 (252)
T PF05176_consen 96 DKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLI------- 166 (252)
T ss_pred HhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecc-------
Confidence 45667999999999999999877 5999887777754 53344332222 22333322 2 5999999974
Q ss_pred CCHHHHHHHHHhhC------CCC---ccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCC
Q 027134 139 GDNEQIQEFACTRF------KAE---FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (227)
Q Consensus 139 ~~~~~~~~~~~~~~------~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g 209 (227)
...++.++..-+ .++ +......+.. .....+-+.+ +- .=..+..+||||++|+|+++..|
T Consensus 167 --e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~-~~~~~iRe~L----gi----~N~~~GYvyLVD~~grIRWagsG 235 (252)
T PF05176_consen 167 --ENWLKSWLVKLFMGSLRKSIPEERHDRYFIVYRG-QLSDDIREAL----GI----NNSYVGYVYLVDPNGRIRWAGSG 235 (252)
T ss_pred --hHHHHHHHHHHHhhhhhccCCHHHCceEEEEeCC-cccHHHHHHh----CC----CCCCcCeEEEECCCCeEEeCccC
Confidence 222334431111 111 1111001111 0011111111 10 00114578999999999999999
Q ss_pred CCChhhHHHHH
Q 027134 210 TTSPLSIEKDI 220 (227)
Q Consensus 210 ~~~~~~l~~~i 220 (227)
..++++++...
T Consensus 236 ~At~~E~~~L~ 246 (252)
T PF05176_consen 236 PATPEELESLW 246 (252)
T ss_pred CCCHHHHHHHH
Confidence 99888766543
No 156
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.66 E-value=0.00025 Score=46.39 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=24.1
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+..||++|||+|++..+.|.++ ++.+-.|++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence 5679999999999988877553 4555567776
No 157
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.66 E-value=0.00031 Score=50.22 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=29.9
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhc--CCcEEEEEeCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCNQ 132 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~D~ 132 (227)
+.+.+||.|+|+| |.|.+ .|..++|..+|.. ..+.|.-|.+|+
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d 61 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKD 61 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccc
Confidence 4678999999955 44444 4777777777743 237788887764
No 158
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.64 E-value=0.0002 Score=58.70 Aligned_cols=90 Identities=16% Similarity=0.238 Sum_probs=60.9
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcC----CcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeecc
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ----GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~----~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (227)
...|+|+|+|.||+..+...|.+.+..++++++ .+++-.|..|. . ..+..+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~--------e----~~ia~k------------- 67 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK--------E----DDIADK------------- 67 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch--------h----hHHhhh-------------
Confidence 569999999999999999999999877777643 35555555542 1 111122
Q ss_pred CCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEE-ecCCCCChhhHHHHHHHHhh
Q 027134 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE-RYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~-~~~g~~~~~~l~~~i~~lL~ 225 (227)
| .|.-.||.=|+ ++|.+.. .|.|.-.-+.+.+.|++.++
T Consensus 68 --------y-------------~I~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 68 --------Y-------------HINKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred --------h-------------ccccCceeeee-eccchhhhhhccchhHHHHHHHHHHHhc
Confidence 2 34445676555 6788776 47776677778777777664
No 159
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.55 E-value=0.0011 Score=52.61 Aligned_cols=117 Identities=13% Similarity=0.212 Sum_probs=74.1
Q ss_pred CccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCC---cEEEEEeCCCCCCCCCCCHHH
Q 027134 67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG---LEILAFPCNQFGAQEPGDNEQ 143 (227)
Q Consensus 67 ~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~---~~vl~Vs~D~~~~~~~~~~~~ 143 (227)
...|.+++.+ ..-..+..|+++||-+--.+|..|...+..|..|..++.+.| |.++.||-- +..+. .
T Consensus 8 ~~~p~W~i~~----~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~-----~~~s~-~ 77 (238)
T PF04592_consen 8 KPPPPWKIGG----QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ-----GEHSR-L 77 (238)
T ss_pred CCCCCceECC----chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC-----Ccchh-H
Confidence 3456665533 334667799999999998899999999999999999998765 677777632 22222 2
Q ss_pred HHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecC
Q 027134 144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA 208 (227)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~ 208 (227)
....++++....+|++.- +.... .+|..+. |..+ ..+|+|+=|++.+...
T Consensus 78 ~~~~l~~r~~~~ipVyqq-~~~q~---dvW~~L~---G~kd--------D~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 78 KYWELKRRVSEHIPVYQQ-DENQP---DVWELLN---GSKD--------DFLIYDRCGRLTYHIP 127 (238)
T ss_pred HHHHHHHhCCCCCceecC-Ccccc---CHHHHhC---CCcC--------cEEEEeccCcEEEEec
Confidence 222333444445787731 21222 2343332 1111 4699999999998754
No 160
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.47 E-value=0.00046 Score=56.31 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=26.1
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHH
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDK 117 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~ 117 (227)
.+|.+|+.|....||+|++..+.+.++.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 578899999999999999999998887654
No 161
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.47 E-value=0.00032 Score=46.72 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.3
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|+.|+++|||+|....+.|.++. .+. .+.++-|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL 36 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC
Confidence 46788999999999999998875 222 2677777655
No 162
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.46 E-value=0.0016 Score=52.44 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=30.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 130 (227)
.||.+|+.|....||+|++..+.+.++.+ .++.|..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~ 144 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAF 144 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEec
Confidence 58899999999999999999988876633 4576666544
No 163
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.42 E-value=0.00024 Score=50.99 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCCEEEEEEec-------CCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVA-------SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~a-------swC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
.|++++|.|.+ +|||.|+...|.+++..+..++ +..++-|.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG 67 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG 67 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 56788888884 4999999999999998888554 5888888764
No 164
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.32 E-value=0.00042 Score=56.81 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=29.2
Q ss_pred CEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEE
Q 027134 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEI 125 (227)
Q Consensus 90 k~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~v 125 (227)
..-+|+|||+||.+|++.-|...++--++++-|.-|
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~Pi 79 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPI 79 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCce
Confidence 367899999999999999999888877777655433
No 165
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.31 E-value=0.004 Score=47.09 Aligned_cols=85 Identities=7% Similarity=0.038 Sum_probs=42.0
Q ss_pred cCCCCCCEEEEEEecCCCCcchHhHH-HHH--HHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCcccee
Q 027134 84 LSIYKGKLLLIVNVASQCGLTNSNYT-ELS--QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFD 160 (227)
Q Consensus 84 l~~~~gk~vlv~F~aswC~~C~~~~~-~l~--~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (227)
.+.-.+|+++|++.++||..|..+.. .++ ++.+.+.+. +|.|-+|. +....+......-
T Consensus 32 ~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDr------ee~Pdid~~y~~~--------- 93 (163)
T PF03190_consen 32 KAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDR------EERPDIDKIYMNA--------- 93 (163)
T ss_dssp HHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEET------TT-HHHHHHHHHH---------
T ss_pred HHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEecc------ccCccHHHHHHHH---------
Confidence 33346899999999999999986654 222 244444333 55555542 1233333322100
Q ss_pred eeccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEec
Q 027134 161 KVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY 207 (227)
Q Consensus 161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~ 207 (227)
...+. +..+.|.+++++|+|+.++..
T Consensus 94 --------~~~~~-------------~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 94 --------VQAMS-------------GSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp --------HHHHH-------------S---SSEEEEE-TTS-EEEEE
T ss_pred --------HHHhc-------------CCCCCCceEEECCCCCeeeee
Confidence 00000 233589999999999999863
No 166
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.21 E-value=0.0015 Score=42.95 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=19.8
Q ss_pred ecCCCCcchHhHHHHHHHHHHHh
Q 027134 97 VASQCGLTNSNYTELSQLYDKYK 119 (227)
Q Consensus 97 ~aswC~~C~~~~~~l~~l~~~~~ 119 (227)
+.++|+.|......++++.++++
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~ 28 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG 28 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC
Confidence 57789999999999999888874
No 167
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.16 E-value=0.0043 Score=48.62 Aligned_cols=85 Identities=15% Similarity=0.266 Sum_probs=66.1
Q ss_pred ccCCeEEecCCCCeeecCC-CCCC--EEEEEEe-----cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCC
Q 027134 68 SVHDFSVKDAKGQDVDLSI-YKGK--LLLIVNV-----ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG 139 (227)
Q Consensus 68 ~~p~f~l~~~~G~~v~l~~-~~gk--~vlv~F~-----aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~ 139 (227)
.-.+..+...+|+ ++|.| |.|+ .+|..|. ..-|+.|...+-.++....-+..+++.++.||-.
T Consensus 45 v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra-------- 115 (211)
T PF05988_consen 45 VDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA-------- 115 (211)
T ss_pred CCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC--------
Confidence 3345667778888 89988 5776 4444554 4579999999999977777778888999999965
Q ss_pred CHHHHHHHHHhhCCCCccceeee
Q 027134 140 DNEQIQEFACTRFKAEFPIFDKV 162 (227)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~ 162 (227)
+.+++..|. ++.|.++|+++..
T Consensus 116 P~~~i~afk-~rmGW~~pw~Ss~ 137 (211)
T PF05988_consen 116 PLEKIEAFK-RRMGWTFPWYSSY 137 (211)
T ss_pred CHHHHHHHH-HhcCCCceEEEcC
Confidence 899999998 6779999998543
No 168
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.00041 Score=61.44 Aligned_cols=60 Identities=17% Similarity=0.356 Sum_probs=44.0
Q ss_pred CEEEEEEecCCCCcchHhHHHHHHHHHHHhc-CC-cEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCC-ccce
Q 027134 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QG-LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE-FPIF 159 (227)
Q Consensus 90 k~vlv~F~aswC~~C~~~~~~l~~l~~~~~~-~~-~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 159 (227)
+.-+|.|+++||+.|+...|.++++.+...+ .. +.|.+|+.- .+...+.+ ++|+++ ||.+
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~lC-Ref~V~~~Ptl 120 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKLC-REFSVSGYPTL 120 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhhH-hhcCCCCCcee
Confidence 5788999999999999999999999888875 22 566677653 33444555 566665 5554
No 169
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.15 E-value=0.0054 Score=48.06 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=26.7
Q ss_pred eeecCCCCCCEEEEEEecCCCCcchHhHHHHHH
Q 027134 81 DVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ 113 (227)
Q Consensus 81 ~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~ 113 (227)
.+.+..-.++++|+.|....||+|++..+.+.+
T Consensus 69 ~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 69 AIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 344444457899999999999999999998877
No 170
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.00 E-value=0.018 Score=43.89 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=36.0
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
.++++|+.|+...||+|....+.+.++.++++++ +.+.-+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD-VKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC-ceEEEcCCc
Confidence 6789999999999999999999999999998653 666655543
No 171
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=96.99 E-value=0.012 Score=42.24 Aligned_cols=107 Identities=17% Similarity=0.226 Sum_probs=64.9
Q ss_pred cCCCCCCEEEEEEecC--CCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceee
Q 027134 84 LSIYKGKLLLIVNVAS--QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK 161 (227)
Q Consensus 84 l~~~~gk~vlv~F~as--wC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (227)
|+++++|.-+|..+|+ .-+.-...+..|++-...+.++++.++.+.-+.+.... .
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~-------------------~---- 59 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG-------------------K---- 59 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc-------------------C----
Confidence 5677776444444454 33455677788888788888888999988543211100 0
Q ss_pred eccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 162 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
.........+.+.+.... ...+.+||+++|.+..++....+++++-..|+..
T Consensus 60 -~~~~~~~~~lr~~l~~~~---------~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 60 -PLSPEDIQALRKRLRIPP---------GGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred -cCCHHHHHHHHHHhCCCC---------CceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 001111222332222111 1137899999999999988888899998888764
No 172
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0034 Score=54.39 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=35.9
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhc-CCcEEEEEeCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCN 131 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~D 131 (227)
....+|.|+++||++|+..+|...++...++. .++.+..+..+
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 45788889999999999999999999999874 45777777643
No 173
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.85 E-value=0.012 Score=48.26 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=35.3
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
++-+|||+||-+.++.|...-..|..|..+|+. +.|+.|...
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~ 186 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS 186 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence 355899999999999999999999999999987 899998754
No 174
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=96.83 E-value=0.011 Score=42.11 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCCchh-------------------
Q 027134 111 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAP------------------- 171 (227)
Q Consensus 111 l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------------------- 171 (227)
|.+...++++.|+.++.|... +.+.+++|+ +..+.+++++ .|.+.. .+.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~-~~~~~p~~ly--~D~~~~-lY~~lg~~~~~~~~~~~~~~~~ 69 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFC-ELTGFPFPLY--VDPERK-LYKALGLKRGLKWSLLPPALWS 69 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHH-hccCCCCcEE--EeCcHH-HHHHhCCccccccCCCchHHHH
Confidence 566778888889999999976 676699998 6678899987 454321 000
Q ss_pred hH----HHhhhc-CCCCC-CCccccceeEEEECCCCcEEEecCC
Q 027134 172 LY----KHLKSS-KGGLF-GDSIKWNFSKFLVDKEGNVVERYAP 209 (227)
Q Consensus 172 ~~----~~~~~~-~~~~~-~~~i~~~P~~~lid~~G~I~~~~~g 209 (227)
.+ ...... ..+.. ++.+...+.+||+|++|+|++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 70 GLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 00 011111 12222 3466678899999999999998753
No 175
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.003 Score=44.78 Aligned_cols=43 Identities=9% Similarity=0.181 Sum_probs=35.2
Q ss_pred CCCEEEEEEec--------CCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVA--------SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~a--------swC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+|+.++|.|.+ ||||.|.+..|-+.+..+....+ +.+|-|-+-
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~-~~~v~v~VG 74 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED-VHFVHVYVG 74 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc-eEEEEEEec
Confidence 67778888874 59999999999999988866654 888888765
No 176
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.48 E-value=0.0096 Score=39.90 Aligned_cols=37 Identities=5% Similarity=0.064 Sum_probs=30.9
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|..|..+|||.|......|+++..++ +++.+.-|+++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH 39 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence 56688999999999999999998775 35888888876
No 177
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.41 E-value=0.007 Score=44.79 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=33.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 130 (227)
.++++|+.|+..+||+|+...+.+.++..++++ +.++.+.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEeC
Confidence 478999999999999999999999998887754 55555443
No 178
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.16 E-value=0.017 Score=43.23 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=39.4
Q ss_pred eecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHH--hcCCcEEEEEeCC
Q 027134 82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY--KNQGLEILAFPCN 131 (227)
Q Consensus 82 v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~--~~~~~~vl~Vs~D 131 (227)
+.+.+-.++++|+.|+...||+|.+..+.+.++.+++ +++ +.++.+++.
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~-v~~~~~~~~ 55 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGK-VKFVFRPVP 55 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTT-EEEEEEESS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCc-eEEEEEEcc
Confidence 4455567789999999999999999999999999998 443 888888764
No 179
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.03 E-value=0.035 Score=35.25 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=23.7
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
++.|+.+||+.|......|.+ .++.+..+++|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 456789999999976665554 45777778776
No 180
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.72 E-value=0.052 Score=42.71 Aligned_cols=81 Identities=14% Similarity=0.247 Sum_probs=60.1
Q ss_pred EEecCCCCeeecCC-CCCC--EEEEEEe-c----CCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHH
Q 027134 73 SVKDAKGQDVDLSI-YKGK--LLLIVNV-A----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI 144 (227)
Q Consensus 73 ~l~~~~G~~v~l~~-~~gk--~vlv~F~-a----swC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~ 144 (227)
-+...+| +.+|+| |.|| .+|-.|. + .-||.|-..+-.+.-...-+...++.++.||-- +.+++
T Consensus 56 ~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl~~l 126 (247)
T COG4312 56 VFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PLEEL 126 (247)
T ss_pred EeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cHHHH
Confidence 3445566 578888 4676 4444443 3 369999988888877777777778999999954 78899
Q ss_pred HHHHHhhCCCCccceeeec
Q 027134 145 QEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~d 163 (227)
..+. ++.|.+||+++..+
T Consensus 127 ~~~k-~rmGW~f~w~Ss~~ 144 (247)
T COG4312 127 VAYK-RRMGWQFPWVSSTD 144 (247)
T ss_pred HHHH-HhcCCcceeEeccC
Confidence 9887 78899999986444
No 181
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.65 E-value=0.19 Score=33.44 Aligned_cols=33 Identities=6% Similarity=0.295 Sum_probs=24.7
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
+..|..+|||.|......|.+ +|+.+-.|++|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVDR 35 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECCC
Confidence 345778999999987666643 578888888873
No 182
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.56 E-value=0.041 Score=36.21 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=24.6
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|+.|..+|||.|...-+.|.++.. .+.++-|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence 456779999999988888887543 2556666655
No 183
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.45 E-value=0.068 Score=33.07 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=25.1
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
|+.|+.+|||.|......|+ ++|+.+-.++++.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~-------~~~i~y~~~dv~~ 33 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD-------EKGIPYEEVDVDE 33 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH-------HTTBEEEEEEGGG
T ss_pred cEEEEcCCCcCHHHHHHHHH-------HcCCeeeEccccc
Confidence 46688999999997776663 3568888888873
No 184
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.32 E-value=0.1 Score=33.62 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=24.7
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
|..|..+|||.|......|++ .|+.+-.++++.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~ 34 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDG 34 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence 456778999999987777764 457777788773
No 185
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.017 Score=45.54 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=36.9
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
+++.+++.||+.||..|......+..+.+.. ++++++.+..|.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~ 58 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEE 58 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhh
Confidence 7889999999999999998888888888887 448888887764
No 186
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.03 E-value=0.1 Score=32.83 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=24.0
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|+.|..+|||.|+.....|.+. ++.+.-++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~ 33 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDIL 33 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECC
Confidence 4567799999999888777754 3666677766
No 187
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.01 E-value=0.091 Score=34.41 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=22.6
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
..|+.+|||.|......|++ .|+.+--++++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~ 32 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVD 32 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEEEEec
Confidence 45779999999987777764 34666666666
No 188
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.41 Score=36.91 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=45.0
Q ss_pred ecCCCCeeecCCC-CC-CEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEe
Q 027134 75 KDAKGQDVDLSIY-KG-KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (227)
Q Consensus 75 ~~~~G~~v~l~~~-~g-k~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs 129 (227)
.+..|+.+...++ +. +.+|...--.-|-.|+.+...|.++..-++..|+..++|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5778999999886 44 4555545588999999999999999888888899999986
No 189
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.76 E-value=0.1 Score=35.02 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=26.6
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|+.|..+|||.|.+....|+++..++. ++.+.-++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 455778999999988888887655433 3666666665
No 190
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.57 E-value=0.28 Score=44.71 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=29.1
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 130 (227)
++..+-.|..++||.|+.....++++..+.++ +..-.|..
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~--i~~~~i~~ 515 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN--VEAEMIDV 515 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC--ceEEEEEC
Confidence 34445556699999999999999988888653 65555543
No 191
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.054 Score=42.69 Aligned_cols=44 Identities=20% Similarity=0.050 Sum_probs=39.0
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+.++-+|.||+.|.|.|+...|-+.++..+|...++.+=.|.+.
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG 186 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG 186 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec
Confidence 44578899999999999999999999999999888888887765
No 192
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.55 E-value=0.24 Score=31.88 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=23.7
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+.|..+|||.|++....|++ .|+.+-.++++
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 44668999999988777775 45777777776
No 193
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.37 E-value=0.17 Score=33.31 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=26.3
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
.+.-|+.|..+|||.|.+.-..|.+ .|+.+-.+++|
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~ 41 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG 41 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence 3444566889999999988777753 45777777776
No 194
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.12 E-value=0.096 Score=41.35 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=33.9
Q ss_pred CCCEEEEEEecCCCCcchHhHHHH---HHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~D 131 (227)
.|++.||.|+.-.||+|....+.+ ..+.+.++++ +.++-+.++
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~-v~~~~~~~~ 81 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG-TKMTKYHVE 81 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC-CeEEEeccc
Confidence 578889999999999999987765 7777777654 777766654
No 195
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.39 Score=44.16 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=48.1
Q ss_pred CCCCEEEEEEecCCCCcchHhHHH-H--HHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeec
Q 027134 87 YKGKLLLIVNVASQCGLTNSNYTE-L--SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD 163 (227)
Q Consensus 87 ~~gk~vlv~F~aswC~~C~~~~~~-l--~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 163 (227)
-.+|+++|...++||..|..+..+ + .++.+-+++. +|.|-+|. .+.
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~---FV~IKVDR---EER------------------------- 89 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN---FVPVKVDR---EER------------------------- 89 (667)
T ss_pred HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC---ceeeeECh---hhc-------------------------
Confidence 368999999999999999866542 1 1233333333 55555552 111
Q ss_pred cCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEe
Q 027134 164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER 206 (227)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~ 206 (227)
.++..+|-..-...+|.. +.|-++++-|+|+..+.
T Consensus 90 ---PDvD~~Ym~~~q~~tG~G-----GWPLtVfLTPd~kPFfa 124 (667)
T COG1331 90 ---PDVDSLYMNASQAITGQG-----GWPLTVFLTPDGKPFFA 124 (667)
T ss_pred ---cCHHHHHHHHHHHhccCC-----CCceeEEECCCCceeee
Confidence 112333322222222222 38999999999999875
No 196
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.098 Score=33.92 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=28.0
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC 149 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~ 149 (227)
+.|++..||.|......|.++.=. ...|-|. ++...+++|++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt---------~Sm~NlKrFl~ 46 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEIT---------ESMANLKRFLH 46 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-----ceeeehh---------hhhhhHHHHHh
Confidence 458899999998777777664222 3334332 26788888884
No 197
>PHA03050 glutaredoxin; Provisional
Probab=93.65 E-value=0.12 Score=36.40 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=16.9
Q ss_pred EEEEecCCCCcchHhHHHHHHH
Q 027134 93 LIVNVASQCGLTNSNYTELSQL 114 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l 114 (227)
|+.|..+|||+|.+....|++.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 4558899999998777666654
No 198
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.63 E-value=0.05 Score=43.27 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=29.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEe
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs 129 (227)
.|.+ ++.|+++|||.|..-.+.+.++..--.+-++.+--|.
T Consensus 39 ~gew-mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VD 79 (248)
T KOG0913|consen 39 TGEW-MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVD 79 (248)
T ss_pred chHH-HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEE
Confidence 3444 4679999999999999998887665555555554443
No 199
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.20 E-value=0.31 Score=31.35 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=24.0
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
..|..++||.|+.....|++ +|+.+-.++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 34668999999988887764 46777778776
No 200
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.19 E-value=0.69 Score=32.38 Aligned_cols=43 Identities=14% Similarity=0.377 Sum_probs=29.3
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
..++++|+=..|.||........+++.++...+. +.+..+.+=
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~ 60 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI 60 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE
Confidence 3678888777999999999999999999887765 777777653
No 201
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=93.13 E-value=0.79 Score=33.38 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=58.1
Q ss_pred CEEEEEEecC--CCC-cch-HhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccC
Q 027134 90 KLLLIVNVAS--QCG-LTN-SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN 165 (227)
Q Consensus 90 k~vlv~F~as--wC~-~C~-~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (227)
+.=+|.|.-+ .|. -+. .....+.++.++|+++.+.++.++.+. ... +. +.+++.
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--------~~~---~~-~~fgl~---------- 78 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--------QLD---LE-EALNIG---------- 78 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--------cHH---HH-HHcCCC----------
Confidence 3555556532 344 243 345678889999988778888887763 111 22 222321
Q ss_pred CCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEe-cCCCCChhhHHHHHHHHhh
Q 027134 166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER-YAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~-~~g~~~~~~l~~~i~~lL~ 225 (227)
+ ...|+.++++.++. .+. +.|..+.+.+.+.+++.++
T Consensus 79 ~----------------------~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 79 G----------------------FGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred c----------------------cCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHc
Confidence 0 12578888888776 666 6788888899999988774
No 202
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.12 E-value=0.42 Score=37.08 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=57.6
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
+-..||+.||-.....|+.+-..|..+.+++-+ +.++-|+.. + -|++
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae---------------------~--~PFl-------- 129 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAE---------------------K--APFL-------- 129 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecc---------------------c--Ccee--------
Confidence 456899999998889999999999999999865 888888743 1 2333
Q ss_pred CchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCCCC
Q 027134 168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT 211 (227)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g~~ 211 (227)
+.++ +|+.+|+..++ ++|+.+.+++|..
T Consensus 130 -v~kL--------------~IkVLP~v~l~-k~g~~~D~iVGF~ 157 (211)
T KOG1672|consen 130 -VTKL--------------NIKVLPTVALF-KNGKTVDYVVGFT 157 (211)
T ss_pred -eeee--------------eeeEeeeEEEE-EcCEEEEEEeeHh
Confidence 1222 78889998888 7899988888744
No 203
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.08 E-value=0.39 Score=33.20 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=21.7
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|+.|..+|||.|.+.-..|.+ .++.+-.+.+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~-------~~i~~~~vdid 41 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT-------LGVNPAVHEID 41 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCCEEEEcC
Confidence 345778999999976665544 34555566666
No 204
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=92.86 E-value=0.2 Score=37.23 Aligned_cols=140 Identities=17% Similarity=0.231 Sum_probs=70.2
Q ss_pred cCCCccCCeEEecC-----CCCeee-----cCCCCCCEEEEEEecCCCCcchHhHHHHHHHHH--HHhcCCcEEE-EEeC
Q 027134 64 QSKTSVHDFSVKDA-----KGQDVD-----LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYD--KYKNQGLEIL-AFPC 130 (227)
Q Consensus 64 ~~g~~~p~f~l~~~-----~G~~v~-----l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~--~~~~~~~~vl-~Vs~ 130 (227)
+.|..+|...+.+- +|+.++ .+++-||+-+|.--|-... .+.....|-+..+ +|+....+-- -|+.
T Consensus 24 q~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRts-aKE~Na~lieaIk~a~fp~~~YQTTTIiN~ 102 (184)
T COG3054 24 QLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTS-AKEKNATLIEAIKSAKFPHDRYQTTTIINT 102 (184)
T ss_pred ccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccc-hhhhchHHHHHHHhccCChHHceeeEEecc
Confidence 55666666655442 444443 4556799877765544322 2222222332222 2222122222 2455
Q ss_pred CCCCCCCCCCHHHHHHHHHhhCCCCccceee-eccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCcEEEecCC
Q 027134 131 NQFGAQEPGDNEQIQEFACTRFKAEFPIFDK-VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP 209 (227)
Q Consensus 131 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~I~~~~~g 209 (227)
|+ .-+++..-++.-+ ++..-.||+.+. .|.++ .+...|..-.. ....+++|++|++.+...|
T Consensus 103 DD---Ai~GtgmFVkssa-e~~Kke~pwSq~vlD~~g-vak~AWqL~e~------------~SaivVlDk~G~VkfvkeG 165 (184)
T COG3054 103 DD---AIPGTGMFVKSSA-ESNKKEYPWSQFVLDSNG-VAKNAWQLKEE------------SSAVVVLDKDGRVKFVKEG 165 (184)
T ss_pred CC---ccccccceeecch-hhccccCCceeeEEccch-hhhhhhccccc------------cceEEEEcCCCcEEEEecC
Confidence 53 2233433444333 333444565432 35454 23334422111 1367999999999999999
Q ss_pred CCChhhHHHHHH
Q 027134 210 TTSPLSIEKDIK 221 (227)
Q Consensus 210 ~~~~~~l~~~i~ 221 (227)
..+..++.+.|.
T Consensus 166 aLt~aevQ~Vi~ 177 (184)
T COG3054 166 ALTQAEVQQVID 177 (184)
T ss_pred CccHHHHHHHHH
Confidence 888776655543
No 205
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.86 E-value=0.74 Score=31.66 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=24.3
Q ss_pred CCCEEEEEEe----cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNV----ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~----aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+.+.|+|+-. .+|||+|...-..|.+ .|+.+..+.++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~ 50 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVL 50 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECC
Confidence 3456666544 3899999877666655 34666667765
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.68 E-value=0.97 Score=39.80 Aligned_cols=68 Identities=6% Similarity=0.114 Sum_probs=52.6
Q ss_pred cCCCccCCeEEecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
.-+..+-...+.-.+|+.+++.+++|..-+|..-++- ..|...+...+.+.+++.++||.||-|..+.
T Consensus 271 ~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 271 TRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred HhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 3445666777776678899999999975555444443 5778888899999999999999999999874
No 207
>PRK10638 glutaredoxin 3; Provisional
Probab=92.36 E-value=0.76 Score=30.38 Aligned_cols=32 Identities=13% Similarity=0.351 Sum_probs=23.1
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+..|..+|||.|.+....|++ +|+.+--+++|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~ 35 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPID 35 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 344668999999987777765 35666667776
No 208
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.36 E-value=1 Score=40.77 Aligned_cols=67 Identities=9% Similarity=0.071 Sum_probs=44.2
Q ss_pred ccccCCCccCCe--EEecCCCCeeecCC--------CCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEe
Q 027134 61 MASQSKTSVHDF--SVKDAKGQDVDLSI--------YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (227)
Q Consensus 61 ~~~~~g~~~p~f--~l~~~~G~~v~l~~--------~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs 129 (227)
.+...|..+..| .+.+..|....+++ ..++.-+-.|....||+|+.....++++..+.+ ++..-.|.
T Consensus 78 ~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id 154 (517)
T PRK15317 78 AGIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMID 154 (517)
T ss_pred EecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEE
Confidence 344566666666 34455555555543 234455777779999999999999999888755 36666653
No 209
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.27 E-value=0.9 Score=30.65 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=23.6
Q ss_pred CCCEEEEEEec----CCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVA----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~a----swC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+.++|+|+--. +|||.|......|.+. ++.+-.++++
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~ 46 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDIL 46 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcC
Confidence 45566664332 5999998776666553 4666666665
No 210
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.12 E-value=0.58 Score=29.93 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=23.3
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|+.|..+|||.|.+....|++ .|+.+-.++++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 445778999999988666663 35777777776
No 211
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=92.01 E-value=0.22 Score=33.21 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=29.7
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|..|+...||.|....+.+.++.+..++ ++.+..+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 4578899999999999999998855444 4777777665
No 212
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=91.30 E-value=2 Score=32.51 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=29.1
Q ss_pred CCE-EEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 89 GKL-LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 89 gk~-vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+++ +++.|..............++++.++++++ +.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~ 136 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD 136 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH
Confidence 445 666665555556677777788888888776 777777654
No 213
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=91.17 E-value=0.58 Score=33.31 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=35.9
Q ss_pred EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCc
Q 027134 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (227)
.|+.++|+.|++....|++ +|+.+..+++. .++.+.+++.+++ +..+..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~-~~~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDIL-SLLEDGI 52 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHH-HHcCCCH
Confidence 4668999999988877776 45777777765 3455788888888 5555433
No 214
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=90.80 E-value=0.73 Score=32.23 Aligned_cols=48 Identities=8% Similarity=0.156 Sum_probs=34.1
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCC
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK 153 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 153 (227)
..|+.++|+.|++....|.+ .|+.+-.+++. .++.+.+++.+++ .+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~----~~p~s~~eL~~~l-~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYR----KDGLDAATLERWL-AKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecc----cCCCCHHHHHHHH-HHhC
Confidence 34669999999987777665 34555555554 3466899999998 4555
No 215
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.71 E-value=1.9 Score=39.31 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=53.3
Q ss_pred CCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeecc
Q 027134 85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 164 (227)
Q Consensus 85 ~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 164 (227)
.++++.+.|+.|+...|..|.....-|+++... .++ +.+..+..+ +..+.. ++
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~-i~~~~~~~~--------~~~~~~----~~------------- 414 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEK-LNSEAVNRG--------EEPESE----TL------------- 414 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCc-EEEEEeccc--------cchhhH----hh-------------
Confidence 345666778888888888887666666666533 343 555444322 111111 11
Q ss_pred CCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCCc---EEEecCCCCChhhHHHHHHHHhh
Q 027134 165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGN---VVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~---I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
| ++...|++.|++.+|+ |+ |.|.....++...|..++.
T Consensus 415 --------~-------------~v~~~P~~~i~~~~~~~~~i~--f~g~P~G~Ef~s~i~~i~~ 455 (555)
T TIGR03143 415 --------P-------------KITKLPTVALLDDDGNYTGLK--FHGVPSGHELNSFILALYN 455 (555)
T ss_pred --------c-------------CCCcCCEEEEEeCCCcccceE--EEecCccHhHHHHHHHHHH
Confidence 1 4555788888876653 54 4455556677777777664
No 216
>PRK10824 glutaredoxin-4; Provisional
Probab=90.66 E-value=1.1 Score=31.93 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCCEEEEEEec----CCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVA----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~a----swC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
..+.|+|+--. +|||+|.+....|+++ ++.+-.+.++
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~ 53 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDIL 53 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEec
Confidence 34566665444 5999999877776654 3444445555
No 217
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=90.56 E-value=0.73 Score=32.52 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=33.6
Q ss_pred EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCC
Q 027134 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 154 (227)
.|..++|+.|++...-|++ +|+.+-.+++. .++.+.+++.+++ ...+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~-~~~~~ 50 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWL-EKSGL 50 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHH-HHcCC
Confidence 4668999999988777765 45666666665 2355788888887 44454
No 218
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=1 Score=29.73 Aligned_cols=33 Identities=9% Similarity=0.242 Sum_probs=23.5
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
++.|.-++||.|.+.-..|. .+|+.+.-|.++.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~ 35 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD 35 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC
Confidence 34466789999998776666 4567777777663
No 219
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=89.78 E-value=0.85 Score=32.37 Aligned_cols=49 Identities=10% Similarity=0.141 Sum_probs=34.7
Q ss_pred EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCC
Q 027134 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 155 (227)
.|+.++|+.|++....|++ +|+.+-.+++. .++.+.+++++++ +..+..
T Consensus 4 iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~----~~~~~~~el~~~~-~~~~~~ 52 (115)
T cd03032 4 LYTSPSCSSCRKAKQWLEE-------HQIPFEERNLF----KQPLTKEELKEIL-SLTENG 52 (115)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEecC----CCcchHHHHHHHH-HHhcCC
Confidence 4558899999987776665 45777777765 3455788999988 554444
No 220
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.72 E-value=2.7 Score=37.97 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=43.4
Q ss_pred ccccCCCccCCe--EEecCCCCeeecCC--------CCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEE
Q 027134 61 MASQSKTSVHDF--SVKDAKGQDVDLSI--------YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF 128 (227)
Q Consensus 61 ~~~~~g~~~p~f--~l~~~~G~~v~l~~--------~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~V 128 (227)
.+...|..+..| .+.+..|....+++ ..++.-+-.|..+.||+|+.....++++..+.++ +..-.|
T Consensus 79 ~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~--i~~~~i 154 (515)
T TIGR03140 79 AGIPGGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPN--ISHTMI 154 (515)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC--ceEEEE
Confidence 344566666655 34455555555543 2355667778899999999999999888888653 554444
No 221
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=89.32 E-value=0.99 Score=32.91 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=33.9
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCC
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 155 (227)
..|..++|+.|++....|++ +|+.+-.+++. .++.+.+++.+++ ...+..
T Consensus 3 ~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~----~~~~~~~eL~~~l-~~~~~g 52 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIF----SSPLTIDEIKQIL-RMTEDG 52 (131)
T ss_pred EEEeCCCChHHHHHHHHHHH-------cCCCcEEeecc----CChhhHHHHHHHH-HHhcCC
Confidence 34568999999987766554 45767667665 3455778888888 454433
No 222
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.24 E-value=1.2 Score=31.00 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=32.5
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCC
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK 153 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 153 (227)
..|..++|+.|++....|++ +|+.+-.+++. .++.+.+++.++. ...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~~l~~~~-~~~~ 49 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYL----KEPPTKEELKELL-AKLG 49 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeec----cCCCCHHHHHHHH-HhcC
Confidence 34668999999988766665 45556666554 2355788888887 4434
No 223
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=89.23 E-value=9.4 Score=30.09 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=27.6
Q ss_pred EEEEe-cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 027134 93 LIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQF 133 (227)
Q Consensus 93 lv~F~-aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~ 133 (227)
||..| .-.|..|+-.-..|.++.++ .++..++.++|..
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYW 39 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYW 39 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcc
Confidence 45555 55999999999999999888 3599999999963
No 224
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.10 E-value=5.3 Score=28.89 Aligned_cols=43 Identities=14% Similarity=-0.017 Sum_probs=34.9
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
..|.|||-|.-.|.|.|.+.=..|.+..+...+- .+|.-|.+|
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdid 64 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDID 64 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecc
Confidence 4689999999999999999988999999988763 455555554
No 225
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.02 E-value=0.93 Score=36.50 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=38.1
Q ss_pred ecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCc
Q 027134 75 KDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGL 123 (227)
Q Consensus 75 ~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~ 123 (227)
...++..+...+..++++++.|....||+|+..++.|.+.+...++..+
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~ 118 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRL 118 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCce
Confidence 3455666666666668999999999999999999999997777766433
No 226
>PRK12559 transcriptional regulator Spx; Provisional
Probab=87.91 E-value=1.9 Score=31.48 Aligned_cols=46 Identities=4% Similarity=0.095 Sum_probs=32.9
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhh
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR 151 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~ 151 (227)
..|..++|+.|++....|++ +|+.+-.+++. .++.+.+++..++ +.
T Consensus 3 ~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~----~~~~s~~el~~~l-~~ 48 (131)
T PRK12559 3 VLYTTASCASCRKAKAWLEE-------NQIDYTEKNIV----SNSMTVDELKSIL-RL 48 (131)
T ss_pred EEEeCCCChHHHHHHHHHHH-------cCCCeEEEEee----CCcCCHHHHHHHH-HH
Confidence 34568999999987766554 45666666665 3466899999998 44
No 227
>PHA03075 glutaredoxin-like protein; Provisional
Probab=87.78 E-value=0.48 Score=33.52 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=29.9
Q ss_pred CEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEE
Q 027134 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF 128 (227)
Q Consensus 90 k~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~V 128 (227)
|.++|-|.-+.|+.|......|.++..+|.-..+.+++.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf 40 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF 40 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee
Confidence 678999999999999998888888877775333444443
No 228
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=87.42 E-value=3.5 Score=35.95 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=33.3
Q ss_pred ccccceeEEEECCCCcEEEecCCCCChhhHHHHHHHHh
Q 027134 187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 187 ~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL 224 (227)
-+..+|..|+|+..|+-+.+..|....++|...|++.+
T Consensus 74 p~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 74 PYVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred ccccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 56678999999999999999999998888888888754
No 229
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=85.04 E-value=6.9 Score=27.55 Aligned_cols=32 Identities=6% Similarity=-0.055 Sum_probs=20.6
Q ss_pred ceeEEEECCCCcEEEecCCCC-ChhhHHHHHHHH
Q 027134 191 NFSKFLVDKEGNVVERYAPTT-SPLSIEKDIKKL 223 (227)
Q Consensus 191 ~P~~~lid~~G~I~~~~~g~~-~~~~l~~~i~~l 223 (227)
.|...+++.++ ..+...+.. +.+.+.+.+++.
T Consensus 78 ~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 78 KPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 47778888766 444445555 667777776654
No 230
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=83.50 E-value=4.4 Score=29.57 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=34.4
Q ss_pred EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCc
Q 027134 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (227)
.|..++|+.|++...-|++ +|+.+-.+++. .++.+.+++.+++ +..+..+
T Consensus 4 iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~----~~~~s~~eL~~~l-~~~~~~~ 53 (132)
T PRK13344 4 IYTISSCTSCKKAKTWLNA-------HQLSYKEQNLG----KEPLTKEEILAIL-TKTENGI 53 (132)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCCeEEEECC----CCCCCHHHHHHHH-HHhCCCH
Confidence 4558899999986655543 46777777665 3456888999998 4545443
No 231
>PTZ00062 glutaredoxin; Provisional
Probab=82.73 E-value=5.9 Score=31.25 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCCEEEEEEec----CCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVA----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~a----swC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+.++|+|+--. ++||.|++....|++ .++.+..+.++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~ 151 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIF 151 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcC
Confidence 35567665543 588888876666653 35667777776
No 232
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=81.78 E-value=15 Score=25.79 Aligned_cols=35 Identities=6% Similarity=-0.119 Sum_probs=22.9
Q ss_pred ceeEEEECCCCcEEEe-cCCCCChhhHHHHHHHHhh
Q 027134 191 NFSKFLVDKEGNVVER-YAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 191 ~P~~~lid~~G~I~~~-~~g~~~~~~l~~~i~~lL~ 225 (227)
.|...+.+-++.-.+. ..+..+++.+.+.+++.++
T Consensus 74 ~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 74 LPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 4677777765533444 4456667888888887764
No 233
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=81.43 E-value=5.5 Score=29.00 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=35.5
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
..|.|+|-|.-.|-|.|...=..|.+..++.++- ..|..|.+|
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 4789999999999999998888999999988764 666677765
No 234
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=81.33 E-value=8.5 Score=28.93 Aligned_cols=104 Identities=10% Similarity=0.083 Sum_probs=62.8
Q ss_pred CccCCeEEecCCCCeeecCCCCC-CEEEEEEecCCCC-------cchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCC
Q 027134 67 TSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNVASQCG-------LTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP 138 (227)
Q Consensus 67 ~~~p~f~l~~~~G~~v~l~~~~g-k~vlv~F~aswC~-------~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~ 138 (227)
.-.|..++++.+--+....+++| |.||++ -..|- ....++|.++++...|.++++.+++=|.. ..+.
T Consensus 20 ~~~Ph~~vptf~~ip~~I~~~~~ikavVlD--KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG---~~~~ 94 (190)
T KOG2961|consen 20 FVLPHVSVPTFRYIPWEILKRKGIKAVVLD--KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAG---LTEY 94 (190)
T ss_pred eeccccccCccccCCcchhhccCceEEEEc--CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcC---cccc
Confidence 34555566666555566666655 455554 23333 46778999999999999988888887754 2445
Q ss_pred CCHHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhh
Q 027134 139 GDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK 177 (227)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 177 (227)
|.+...++.++.+ ...|++.-.-.+..-..+++.++.
T Consensus 95 D~d~s~Ak~le~k--~gIpVlRHs~kKP~ct~E~~~y~~ 131 (190)
T KOG2961|consen 95 DHDDSKAKALEAK--IGIPVLRHSVKKPACTAEEVEYHF 131 (190)
T ss_pred CCchHHHHHHHHh--hCCceEeecccCCCccHHHHHHHh
Confidence 5555666666344 445666433333333456665543
No 235
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=80.15 E-value=21 Score=26.31 Aligned_cols=48 Identities=15% Similarity=0.353 Sum_probs=32.8
Q ss_pred EEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccc
Q 027134 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (227)
Q Consensus 92 vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (227)
-++.+..+.|+=|..-+..|+ .+|++|=.+..| +...++ +++++++..
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~--------d~~alK----~~~gIp~e~ 74 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETD--------DFLALK----RRLGIPYEM 74 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecC--------cHHHHH----HhcCCChhh
Confidence 345566999999987666554 467999888877 444544 456777643
No 236
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=79.70 E-value=8.2 Score=30.32 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=35.8
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEe
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs 129 (227)
.|-||||..|...-|-|......|+++.-+|+. +.+|-|-
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~ 149 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIP 149 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence 477999999999999999999999999999987 7777764
No 237
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=76.98 E-value=4.6 Score=32.86 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=27.4
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhc
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 120 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~ 120 (227)
.||+.+++..+-|||.|-.+.=.|-....+|.+
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 699999999999999998877666666666665
No 238
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=76.39 E-value=9.7 Score=26.59 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=27.2
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHH
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA 148 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~ 148 (227)
.++||| |--+|||.|.. ++++..+ .++....|-+|.. +...++++++
T Consensus 13 ~~~VVi-fSKs~C~~c~~----~k~ll~~---~~v~~~vvELD~~-----~~g~eiq~~l 59 (104)
T KOG1752|consen 13 ENPVVI-FSKSSCPYCHR----AKELLSD---LGVNPKVVELDED-----EDGSEIQKAL 59 (104)
T ss_pred cCCEEE-EECCcCchHHH----HHHHHHh---CCCCCEEEEccCC-----CCcHHHHHHH
Confidence 345544 78899999986 3333333 3455555666631 2334666665
No 239
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=75.58 E-value=4.4 Score=26.64 Aligned_cols=52 Identities=12% Similarity=0.296 Sum_probs=35.7
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccce
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (227)
|+.|.-..|+-|-.....|.++... .++.+-.|+++. .+++ . ++|+...|++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~--------d~~l---~-~~Y~~~IPVl 53 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDIDE--------DPEL---F-EKYGYRIPVL 53 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETTT--------THHH---H-HHSCTSTSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECCC--------CHHH---H-HHhcCCCCEE
Confidence 5667788999998777777765443 348899999883 3332 2 5777777776
No 240
>PRK10026 arsenate reductase; Provisional
Probab=73.61 E-value=34 Score=25.29 Aligned_cols=49 Identities=10% Similarity=0.238 Sum_probs=33.4
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCC
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 154 (227)
..|+.+.|..|++...-|++. |+.+-.+++- .++-+.++++.++ ...+.
T Consensus 5 ~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~----~~ppt~~eL~~~l-~~~g~ 53 (141)
T PRK10026 5 TIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYL----ETPPTRDELVKLI-ADMGI 53 (141)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeee----CCCcCHHHHHHHH-HhCCC
Confidence 345689999999988877763 4444444432 2355899999998 45554
No 241
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=73.33 E-value=5.6 Score=31.95 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.3
Q ss_pred eEEEECCCCcEEEecCCCCChhhHHHH
Q 027134 193 SKFLVDKEGNVVERYAPTTSPLSIEKD 219 (227)
Q Consensus 193 ~~~lid~~G~I~~~~~g~~~~~~l~~~ 219 (227)
..||+|+.|+|++...|..+++++++.
T Consensus 250 yV~L~D~s~kIRW~g~G~aTp~Eve~L 276 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTATPEEVEQL 276 (287)
T ss_pred EEEEEccCceEEEeecCCCCHHHHHHH
Confidence 579999999999999999988875554
No 242
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.79 E-value=2.8 Score=33.71 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=23.2
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHH
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDK 117 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~ 117 (227)
+.++..+.|...+|+.|+.....+....++
T Consensus 117 ~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~ 146 (244)
T COG1651 117 RLVLREFPFLDPACPYCRRAAQAARCAADQ 146 (244)
T ss_pred ceEEEEeecCCCCcHHHHHHHHHHHHhccc
Confidence 345677777799999999888888876663
No 243
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=70.08 E-value=17 Score=25.67 Aligned_cols=49 Identities=10% Similarity=0.271 Sum_probs=34.2
Q ss_pred EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCC
Q 027134 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 155 (227)
.|..+.|..|++....|++ .|+.+..+++- .++-+.+++..++ +..+.+
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~p~t~~el~~~l-~~~g~~ 51 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLED-------KGIEPEVVKYL----KNPPTKSELEAIF-AKLGLT 51 (114)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----CCCcCHHHHHHHH-HHcCCc
Confidence 4568899999988777765 34555555543 3466899999998 555543
No 244
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=69.88 E-value=16 Score=26.02 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=34.5
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCcc
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (227)
-.|+.+.|..|++...-|++ .|+.+-.+++- ..+.+.+++.+++ +..+..+.
T Consensus 4 tiy~~p~C~t~rka~~~L~~-------~gi~~~~~~y~----~~~~s~~eL~~~l-~~~g~~~~ 55 (117)
T COG1393 4 TIYGNPNCSTCRKALAWLEE-------HGIEYTFIDYL----KTPPSREELKKIL-SKLGDGVE 55 (117)
T ss_pred EEEeCCCChHHHHHHHHHHH-------cCCCcEEEEee----cCCCCHHHHHHHH-HHcCccHH
Confidence 34668999999988777665 44555444433 2356899999998 55564443
No 245
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=68.85 E-value=17 Score=28.41 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=39.6
Q ss_pred EEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccce
Q 027134 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (227)
Q Consensus 92 vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (227)
.+..|--..|+.|...+..+.. .+..+.|..|-.+. +++.+..|+ ..++++-..+
T Consensus 111 rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~-------dD~~Ir~WA-~~~~Idp~~V 165 (200)
T TIGR03759 111 RLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQG-------DDERIRQWA-NRHQIDPAKV 165 (200)
T ss_pred eEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCCC-------CHHHHHHHH-HHcCCCHHHe
Confidence 3444556899999988877743 34458888886543 789999999 6778876554
No 246
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=68.60 E-value=12 Score=32.80 Aligned_cols=33 Identities=3% Similarity=0.174 Sum_probs=24.2
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
|+.|..+|||.|.+.-..|++ +|+.+--|.+|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~~ 36 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLDD 36 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECCC
Confidence 456779999999876665554 467777787773
No 247
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=68.43 E-value=18 Score=27.56 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=45.2
Q ss_pred CEEEEEEecCCCC-cchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccc
Q 027134 90 KLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (227)
Q Consensus 90 k~vlv~F~aswC~-~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (227)
|-+++++=.|=-| .-....|++.++.++.+++|+.++-+|-. +..+++.++ +.++++|-.
T Consensus 29 kgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~-~~l~v~fi~ 89 (175)
T COG2179 29 KGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAA-EKLGVPFIY 89 (175)
T ss_pred cEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhh-hhcCCceee
Confidence 4566766555333 23456799999999999999999999854 788888888 777888754
No 248
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=68.23 E-value=8.9 Score=29.21 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=31.0
Q ss_pred EEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 92 vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+|..|+..-||.|-...+.|.++.+++++-.++...+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 3667778899999999999999999994433555556544
No 249
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=67.43 E-value=21 Score=25.20 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=31.5
Q ss_pred EEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCC
Q 027134 94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK 153 (227)
Q Consensus 94 v~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~ 153 (227)
..|..+.|+.|++...-|.+ +|+.+-.+++- .++.+.++++.++ ...+
T Consensus 3 ~iy~~p~C~~crkA~~~L~~-------~gi~~~~~d~~----~~p~s~~eL~~~l-~~~g 50 (113)
T cd03033 3 IFYEKPGCANNARQKALLEA-------AGHEVEVRDLL----TEPWTAETLRPFF-GDLP 50 (113)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEeehh----cCCCCHHHHHHHH-HHcC
Confidence 34568999999987766654 34444444432 2355889999998 4444
No 250
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=66.09 E-value=75 Score=26.27 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCccCCeEEecCCCCeeecCCCCC-CEEEEEEecCCCCcchHh--HHHHHHHHHHHh--cCCcEEEEEeCC
Q 027134 66 KTSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNVASQCGLTNSN--YTELSQLYDKYK--NQGLEILAFPCN 131 (227)
Q Consensus 66 g~~~p~f~l~~~~G~~v~l~~~~g-k~vlv~F~aswC~~C~~~--~~~l~~l~~~~~--~~~~~vl~Vs~D 131 (227)
=...|-|.+.|.+|..+-.++-+| +.+-++|+ +.+ -.-|.++.++-+ ..+++|+.|++|
T Consensus 79 L~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s-------~qedA~afL~~lk~~~p~l~~~~kV~pvsL~ 142 (270)
T TIGR00995 79 LAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCF-------RQEDAEAFLAQLRKRKPEVGSQAKVVPITLD 142 (270)
T ss_pred hcCCceEEEEcCCCCeEEEECCCCCceEEEEEC-------CHHHHHHHHHHHHhhCccccCCceEEEEEHH
Confidence 346899999999999988876555 55544332 222 223444444433 235999999876
No 251
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=65.69 E-value=9.3 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=21.8
Q ss_pred ccccceeEEEECCCCcEEEecCCCCChhhHHHHHHH
Q 027134 187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKK 222 (227)
Q Consensus 187 ~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~ 222 (227)
++.++|+.+| +|+.+ .+..+.+++.+.|++
T Consensus 133 ~i~~tPt~~i---nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 133 GITGTPTFFI---NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp T-SSSSEEEE---TTCEE---ETTTSHHHHHHHHHH
T ss_pred CCccccEEEE---CCEEe---CCCCCHHHHHHHHcC
Confidence 7889999666 78885 555678888887764
No 252
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=62.64 E-value=89 Score=25.90 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=31.1
Q ss_pred CccCCeEEecCCCCeeecCCCC--CCEEEEEEecCCCCcchHhHHH-HHHHHHHHh--cCCcEEEEEeCC
Q 027134 67 TSVHDFSVKDAKGQDVDLSIYK--GKLLLIVNVASQCGLTNSNYTE-LSQLYDKYK--NQGLEILAFPCN 131 (227)
Q Consensus 67 ~~~p~f~l~~~~G~~v~l~~~~--gk~vlv~F~aswC~~C~~~~~~-l~~l~~~~~--~~~~~vl~Vs~D 131 (227)
...|-|.+.|.+|..+-.++-. ++.+.+.|+ |+.+... |.++.+..+ ..+++|+.|++|
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred cCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 3589999999999998777765 566666554 4444443 444444433 356999999876
No 253
>PRK10853 putative reductase; Provisional
Probab=62.57 E-value=20 Score=25.57 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=33.5
Q ss_pred EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCC
Q 027134 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 154 (227)
.|..+.|..|++...-|++ +|+.+-.+++- ..+-+.+++++++ ++.|+
T Consensus 4 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~----k~p~s~~eL~~~l-~~~g~ 51 (118)
T PRK10853 4 LYGIKNCDTIKKARRWLEA-------QGIDYRFHDYR----VDGLDSELLQGFI-DELGW 51 (118)
T ss_pred EEcCCCCHHHHHHHHHHHH-------cCCCcEEeehc----cCCcCHHHHHHHH-HHcCH
Confidence 4558899999988777765 34666666543 2455889999998 45553
No 254
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=62.17 E-value=26 Score=24.52 Aligned_cols=48 Identities=13% Similarity=0.285 Sum_probs=32.7
Q ss_pred EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCC
Q 027134 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA 154 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~ 154 (227)
.|..+.|..|++....|++ .|+.+..+++- .++-+.+++..++ ...+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~~~t~~el~~~l-~~~~~ 50 (112)
T cd03034 3 IYHNPRCSKSRNALALLEE-------AGIEPEIVEYL----KTPPTAAELRELL-AKLGI 50 (112)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----cCCcCHHHHHHHH-HHcCC
Confidence 4568899999988766665 34555555542 3455889999998 55554
No 255
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=61.89 E-value=68 Score=24.30 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=32.7
Q ss_pred CCccCCeEEec-CCCCeeecCCC---CCCEEEEEEecCCCCcchHhHHHHHHHHHHH
Q 027134 66 KTSVHDFSVKD-AKGQDVDLSIY---KGKLLLIVNVASQCGLTNSNYTELSQLYDKY 118 (227)
Q Consensus 66 g~~~p~f~l~~-~~G~~v~l~~~---~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~ 118 (227)
|.-+|++.+.. .+|+.+.|.+. .|++-|+.|-...- +......|..+.+.+
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~--~~~~~~~l~~~~~~L 55 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIA--PAQQKSRLTQLCDAL 55 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCC--chhHHHHHHHHHHHH
Confidence 56678888877 58999988763 69999888854322 233334444444444
No 256
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.44 E-value=1e+02 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=32.3
Q ss_pred eEEecCCCCeeecCCCCCCEEEEEEecC----CCCcchHhHHHHHHHHHHHhc
Q 027134 72 FSVKDAKGQDVDLSIYKGKLLLIVNVAS----QCGLTNSNYTELSQLYDKYKN 120 (227)
Q Consensus 72 f~l~~~~G~~v~l~~~~gk~vlv~F~as----wC~~C~~~~~~l~~l~~~~~~ 120 (227)
+++.|.+=+.+-....+.-.+++.|.|+ .|..|+.+..+.+-+.+.+..
T Consensus 43 I~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~ 95 (331)
T KOG2603|consen 43 IRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRY 95 (331)
T ss_pred EEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhc
Confidence 3444443333334556665677777654 788999888888888888764
No 257
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=61.27 E-value=59 Score=23.43 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=24.5
Q ss_pred cCCCC--cc----hHhHHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 98 ASQCG--LT----NSNYTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 98 aswC~--~C----~~~~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
|-.|. .| -.++-.+....+.++++|+.|--.++.+
T Consensus 10 amCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~ 50 (123)
T PF06953_consen 10 AMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQ 50 (123)
T ss_dssp S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT
T ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEcccc
Confidence 55665 45 3567778888888889999999999874
No 258
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=61.15 E-value=45 Score=30.70 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=49.3
Q ss_pred cCCCccCCeEEecCCCCeeecCCCC--CCEEEEEEecCCCCcchHhHHHHHHHHHHHhc-CCcEEEEEeCCC
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSIYK--GKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCNQ 132 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~~~--gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~D~ 132 (227)
+.|.++-..++.|-++....-...+ ...++|.|.||..-.-++.+|.|-+|+..-.- +++.|+++.-.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~ 131 (573)
T PLN02640 60 SNGHPLNAVSLQDGENHLTEEHAEKGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTK 131 (573)
T ss_pred CCCCcccceecccccccccHhhccCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 5677777777766554433333333 34788999999988999999999999875322 469999998754
No 259
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=59.82 E-value=39 Score=24.41 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=32.8
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC 149 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~ 149 (227)
+..|+.+.|..|++...-|++ +|+.+-.+++- .++-+.++++.++.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~----~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDIL----KEPWHADTLRPYFG 48 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEecc----CCCcCHHHHHHHHH
Confidence 445668999999988777765 35666666543 34568999999983
No 260
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=57.41 E-value=33 Score=21.35 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=19.1
Q ss_pred EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeC
Q 027134 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 130 (227)
.|+..|||.|++..-.|.+. +..++++-|+.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~ 33 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----GITVELREVEL 33 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 35678999998776666542 22355555543
No 261
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=57.36 E-value=14 Score=25.92 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=46.0
Q ss_pred CCCCeeecCCCCC-CEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCC---CCCCHHHHHHHHHhhC
Q 027134 77 AKGQDVDLSIYKG-KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ---EPGDNEQIQEFACTRF 152 (227)
Q Consensus 77 ~~G~~v~l~~~~g-k~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~---~~~~~~~~~~~~~~~~ 152 (227)
.+.+.-.+++|.+ ..-||-| ..|+.|+ -..+....+++++.|+.+|-++.=-.... .=...+.+++.+++++
T Consensus 23 ~~~r~g~F~~y~~~~~elvgf--~~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~ 98 (107)
T PF08821_consen 23 FNERKGAFARYDDEDVELVGF--FTCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF 98 (107)
T ss_pred HHhccCccccCCCCCeEEEEE--eeCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHh
Confidence 3445556788875 5777777 4566666 66777777777877888888765321111 1134677777775544
Q ss_pred CC
Q 027134 153 KA 154 (227)
Q Consensus 153 ~~ 154 (227)
++
T Consensus 99 gi 100 (107)
T PF08821_consen 99 GI 100 (107)
T ss_pred CC
Confidence 44
No 262
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=57.22 E-value=30 Score=20.41 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=24.8
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 192 FSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 192 P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
....|.+.+|+|+....+..+....++.|+.+-+
T Consensus 6 ~~f~L~a~ng~viasse~Y~sk~~a~~~I~~Vk~ 39 (49)
T PF07411_consen 6 FRFRLKAGNGEVIASSEGYSSKADAEKGIESVKK 39 (49)
T ss_dssp EEEEEE-TTS-EEEEBEEBSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEecCCcCCHHHHHHHHHHHHH
Confidence 3567889999999987777777777777776643
No 263
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.20 E-value=15 Score=28.05 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.5
Q ss_pred EEEEecCCCCcchHhHHHHHHHHHHHh
Q 027134 93 LIVNVASQCGLTNSNYTELSQLYDKYK 119 (227)
Q Consensus 93 lv~F~aswC~~C~~~~~~l~~l~~~~~ 119 (227)
|..|+...||.|-...+.|.++.++|+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 456668899999999999999999984
No 264
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=56.64 E-value=25 Score=20.75 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEECCCCcEEEecCCCCChh--hHHHHHHHHh
Q 027134 195 FLVDKEGNVVERYAPTTSPL--SIEKDIKKLL 224 (227)
Q Consensus 195 ~lid~~G~I~~~~~g~~~~~--~l~~~i~~lL 224 (227)
|.|++||+|.....|..-.. ++-+.|++.|
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 78999999998877755432 3555565555
No 265
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=55.82 E-value=73 Score=24.18 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=44.1
Q ss_pred ccccccCCCccCCeEEec-CCCCeeecCCC---CCCEEEEEEecC-CCCcchHhHHHHHHH-------HHHHhcCC----
Q 027134 59 HTMASQSKTSVHDFSVKD-AKGQDVDLSIY---KGKLLLIVNVAS-QCGLTNSNYTELSQL-------YDKYKNQG---- 122 (227)
Q Consensus 59 ~~~~~~~g~~~p~f~l~~-~~G~~v~l~~~---~gk~vlv~F~as-wC~~C~~~~~~l~~l-------~~~~~~~~---- 122 (227)
......+|..+|+..++. .||+.+.+.+. .|++-|+.|-.. -.+.+...+..+.+. ..+|...+
T Consensus 26 ~a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~ 105 (169)
T PF07976_consen 26 LAGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPD 105 (169)
T ss_dssp GBTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TT
T ss_pred cccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCC
Confidence 334558999999999977 69999999873 799888888644 444555445555443 33444322
Q ss_pred --cEEEEEeCC
Q 027134 123 --LEILAFPCN 131 (227)
Q Consensus 123 --~~vl~Vs~D 131 (227)
++++.|.-.
T Consensus 106 s~~~~~~I~~~ 116 (169)
T PF07976_consen 106 SVFDVLLIHSS 116 (169)
T ss_dssp SSEEEEEEESS
T ss_pred CeeEEEEEecC
Confidence 788888753
No 266
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=54.09 E-value=28 Score=24.16 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=30.8
Q ss_pred EecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccc
Q 027134 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI 158 (227)
Q Consensus 96 F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (227)
|..+.|..|++...-|++ .|+.+-.+++- ..+-+.+++.+++ ...+..+.-
T Consensus 1 Y~~~~C~t~rka~~~L~~-------~gi~~~~~d~~----k~p~s~~el~~~l-~~~~~~~~~ 51 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-------NGIEYEFIDYK----KEPLSREELRELL-SKLGNGPDD 51 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-------TT--EEEEETT----TS---HHHHHHHH-HHHTSSGGG
T ss_pred CcCCCCHHHHHHHHHHHH-------cCCCeEeehhh----hCCCCHHHHHHHH-HHhcccHHH
Confidence 456789999887777664 56777777764 3456889999998 565654443
No 267
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=53.01 E-value=60 Score=22.79 Aligned_cols=27 Identities=4% Similarity=0.017 Sum_probs=19.5
Q ss_pred ccccceeEEEECCCCcEEEecCCCCChh
Q 027134 187 SIKWNFSKFLVDKEGNVVERYAPTTSPL 214 (227)
Q Consensus 187 ~i~~~P~~~lid~~G~I~~~~~g~~~~~ 214 (227)
++...|+.+++ ++|+-+....|..+++
T Consensus 79 gv~~~PaLvf~-R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 79 GVRRWPALVFF-RDGRYLGAIEGIRDWA 105 (107)
T ss_dssp T-TSSSEEEEE-ETTEEEEEEESSSTHH
T ss_pred CCccCCeEEEE-ECCEEEEEecCeeccc
Confidence 56667887777 7899888877766654
No 268
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=51.25 E-value=23 Score=30.16 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=33.4
Q ss_pred ccccceeEEEECC-CCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 187 SIKWNFSKFLVDK-EGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 187 ~i~~~P~~~lid~-~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
.+..+|...+||| .|+-+.++.|..+++.+.+.+.+.+.
T Consensus 151 ~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 151 HISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred eccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 6777899999998 78888899888888888888888764
No 269
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=50.53 E-value=20 Score=27.23 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=22.0
Q ss_pred ccccceeEEEECCCCcEEEecCCCCChhhHHHHHH
Q 027134 187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIK 221 (227)
Q Consensus 187 ~i~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~ 221 (227)
++.++|+.+| +|+ +...|....+.+++.|+
T Consensus 164 gv~GvP~~vv---~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 164 GVFGVPTFVV---NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp TCSSSSEEEE---TTT--EEEESCSSHHHHHHHH-
T ss_pred CCcccCEEEE---CCE--EEEECCCCHHHHHHHhC
Confidence 7888999666 566 56678878888887764
No 270
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=48.63 E-value=78 Score=25.83 Aligned_cols=92 Identities=22% Similarity=0.316 Sum_probs=54.1
Q ss_pred EEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeecc-CCCCc
Q 027134 91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV-NGDNA 169 (227)
Q Consensus 91 ~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~ 169 (227)
.+|| +.+..|+- ...++.+..+|.++|+.+|-|.-++. .....+-+.+ ......|-++ +|. .-+..
T Consensus 54 nvLL-~G~rGtGK----SSlVkall~~y~~~GLRlIev~k~~L-----~~l~~l~~~l-~~~~~kFIlf--~DDLsFe~~ 120 (249)
T PF05673_consen 54 NVLL-WGARGTGK----SSLVKALLNEYADQGLRLIEVSKEDL-----GDLPELLDLL-RDRPYKFILF--CDDLSFEEG 120 (249)
T ss_pred ceEE-ecCCCCCH----HHHHHHHHHHHhhcCceEEEECHHHh-----ccHHHHHHHH-hcCCCCEEEE--ecCCCCCCC
Confidence 4444 44667663 33456677888888999999986632 2455555555 3334555555 543 22333
Q ss_pred hhhHHHhhhcCCCCCCCccccceeEEEECC
Q 027134 170 APLYKHLKSSKGGLFGDSIKWNFSKFLVDK 199 (227)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~~~P~~~lid~ 199 (227)
..-|+.++....| ++..-|.+++|-.
T Consensus 121 d~~yk~LKs~LeG----gle~~P~NvliyA 146 (249)
T PF05673_consen 121 DTEYKALKSVLEG----GLEARPDNVLIYA 146 (249)
T ss_pred cHHHHHHHHHhcC----ccccCCCcEEEEE
Confidence 4566666654322 5566777777743
No 271
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=47.82 E-value=25 Score=26.84 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=24.8
Q ss_pred EEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEE
Q 027134 95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF 128 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~V 128 (227)
.|..+.|+.|-..-|.+.++..+|+.+ +.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEEEEE
Confidence 477899999999999999999999976 544444
No 272
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=46.86 E-value=2.5e+02 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=29.5
Q ss_pred ccccCCCccCCeEEec-CCCCeeecCC-C--CCCEEEEEEec
Q 027134 61 MASQSKTSVHDFSVKD-AKGQDVDLSI-Y--KGKLLLIVNVA 98 (227)
Q Consensus 61 ~~~~~g~~~p~f~l~~-~~G~~v~l~~-~--~gk~vlv~F~a 98 (227)
....+|..+|++.+.. .+++.+.+.+ + .|++.|+.|-.
T Consensus 461 ~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~ 502 (634)
T PRK08294 461 TGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFAD 502 (634)
T ss_pred cCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcC
Confidence 3457899999999987 5788887765 3 68999988854
No 273
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.79 E-value=1.8e+02 Score=23.43 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=28.8
Q ss_pred CEEEEEEe-cCCCCcchHhHHHHHHHHHHHhcC-CcEEEEEe
Q 027134 90 KLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFP 129 (227)
Q Consensus 90 k~vlv~F~-aswC~~C~~~~~~l~~l~~~~~~~-~~~vl~Vs 129 (227)
+.+-|++| -.=||.|-.--+.|.++..+++.. .+++..=+
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~p 45 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRP 45 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecc
Confidence 45556666 669999999999999999998853 24444433
No 274
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=40.83 E-value=39 Score=22.16 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=18.3
Q ss_pred ceeEEEECCCCcEEEec-CCCCChhhHHHHHHHH
Q 027134 191 NFSKFLVDKEGNVVERY-APTTSPLSIEKDIKKL 223 (227)
Q Consensus 191 ~P~~~lid~~G~I~~~~-~g~~~~~~l~~~i~~l 223 (227)
-|...++|.+|+++.+. +...+.+++.+.|.+.
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 58999999999977663 3333455677666554
No 275
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=38.53 E-value=25 Score=26.45 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=24.7
Q ss_pred cceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 190 WNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 190 ~~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
.-|+.|++|-+|-|.+.-+ +.+++.|..+|.
T Consensus 96 ~~~r~~VldF~Gdi~A~~v-----~~LReeisail~ 126 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEV-----ESLREEISAILS 126 (155)
T ss_pred CCCeEEEEecCCCccHHHH-----HHHHHHHHHHHH
Confidence 3589999999999986543 568888888875
No 276
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=37.61 E-value=2.1e+02 Score=25.31 Aligned_cols=11 Identities=45% Similarity=0.715 Sum_probs=6.8
Q ss_pred EEEECCCCcEE
Q 027134 194 KFLVDKEGNVV 204 (227)
Q Consensus 194 ~~lid~~G~I~ 204 (227)
..++|.+|+++
T Consensus 244 l~~vd~~G~~i 254 (443)
T PRK10887 244 VIMVDHLGNLV 254 (443)
T ss_pred EEEECCCCcEe
Confidence 45667777654
No 277
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=37.36 E-value=1.5e+02 Score=22.04 Aligned_cols=25 Identities=8% Similarity=-0.126 Sum_probs=17.0
Q ss_pred CCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 100 QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 100 wC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
+||.|...-..|+. .++.+--++++
T Consensus 15 t~~~C~~ak~iL~~-------~~V~~~e~DVs 39 (147)
T cd03031 15 TFEDCNNVRAILES-------FRVKFDERDVS 39 (147)
T ss_pred cChhHHHHHHHHHH-------CCCcEEEEECC
Confidence 89999876666654 34666666665
No 278
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=37.01 E-value=2e+02 Score=25.47 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=19.8
Q ss_pred CcEEEEEeCCCCC-----CCCCCCHHHHHHHHHhhCCCCccceeeeccCCC
Q 027134 122 GLEILAFPCNQFG-----AQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD 167 (227)
Q Consensus 122 ~~~vl~Vs~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 167 (227)
|+.++.++.+..+ .+++...+.+.+.+ .+.+.++-+. .|.+++
T Consensus 199 G~~v~~i~~~~dg~~~~~~~~~~~~e~l~~~v-~~~~adlGia--~DgDgD 246 (446)
T PRK14324 199 GADVIVINDEPNGFNINENCGALHPENLAQEV-KRYRADIGFA--FDGDAD 246 (446)
T ss_pred CCeEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HhCCCCEEEE--ECCCCc
Confidence 4556666544211 11223556666665 3445544444 444443
No 279
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=36.77 E-value=23 Score=24.60 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=22.6
Q ss_pred EecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEe
Q 027134 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (227)
Q Consensus 96 F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs 129 (227)
||..+||.|......+.+. + ....++++.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d--~~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-D--RGGRLRFVDIQ 32 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-C--CCCCEEEEECC
Confidence 6788999999998888876 1 11237777773
No 280
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=35.95 E-value=1.1e+02 Score=19.26 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=13.3
Q ss_pred EecCCCCcchHhHHHHHH
Q 027134 96 NVASQCGLTNSNYTELSQ 113 (227)
Q Consensus 96 F~aswC~~C~~~~~~l~~ 113 (227)
+..++||.|++..-.|.+
T Consensus 5 y~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 5 YEFEGSPFCRLVREVLTE 22 (77)
T ss_pred ecCCCCchHHHHHHHHHH
Confidence 446799999877666655
No 281
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=35.08 E-value=97 Score=21.05 Aligned_cols=31 Identities=10% Similarity=-0.075 Sum_probs=22.0
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 192 FSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 192 P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
|..-+.+|+|++.|..+ ++++..+.+++.+.
T Consensus 49 PlV~V~~p~g~v~Y~~V---~~edv~~Iv~~~~~ 79 (92)
T cd03063 49 PLVEVETPGGRVAYGPV---TPADVASLLDAGAL 79 (92)
T ss_pred CEEEEEeCCCcEEEEeC---CHHHHHHHHHHHhh
Confidence 66666678887766555 68888887777654
No 282
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=34.16 E-value=40 Score=21.30 Aligned_cols=19 Identities=11% Similarity=0.037 Sum_probs=14.0
Q ss_pred EEecCCCCcchHhHHHHHH
Q 027134 95 VNVASQCGLTNSNYTELSQ 113 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~ 113 (227)
.|....||.|++..-.|.+
T Consensus 4 Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEcCCCHHHHHHHHHHHH
Confidence 3557889999987766654
No 283
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=34.05 E-value=3.1e+02 Score=23.74 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=24.1
Q ss_pred ceeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 191 NFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 191 ~P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
.++.|+. ++|+++... |..+++.+...|-.+++
T Consensus 113 ~~SiyVf-kd~~~IEyd-G~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 113 EGSIYVF-KDGEVIEYD-GERSADTLVEFLLDLLE 145 (383)
T ss_dssp TTEEEEE-ETTEEEEE--S--SHHHHHHHHHHHHS
T ss_pred cCcEEEE-ECCcEEEec-CccCHHHHHHHHHHhcc
Confidence 3467777 788888654 99999999999988875
No 284
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=33.48 E-value=2.5e+02 Score=24.82 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHhhCCCCccce
Q 027134 139 GDNEQIQEFACTRFKAEFPIF 159 (227)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~ 159 (227)
...+.+.+.+ ++.+.++-+.
T Consensus 219 ~~~~~l~~~v-~~~~adlGia 238 (448)
T PRK14316 219 THPEALQELV-VEKGADLGLA 238 (448)
T ss_pred CCHHHHHHHH-hhcCCCEEEE
Confidence 3455666665 3434444443
No 285
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=33.45 E-value=1.5e+02 Score=20.97 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=7.6
Q ss_pred CCCCEEEEEEecCCC
Q 027134 87 YKGKLLLIVNVASQC 101 (227)
Q Consensus 87 ~~gk~vlv~F~aswC 101 (227)
++||.+.+.-.+.|.
T Consensus 78 ~~gk~~~vfgt~g~~ 92 (140)
T TIGR01753 78 LGGKKVALFGSGDWG 92 (140)
T ss_pred CCCCEEEEEecCCCC
Confidence 456665554434443
No 286
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=32.83 E-value=58 Score=21.27 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEECCCCcEEEecCC-----CCChhhHHHHHHHHhh
Q 027134 194 KFLVDKEGNVVERYAP-----TTSPLSIEKDIKKLLE 225 (227)
Q Consensus 194 ~~lid~~G~I~~~~~g-----~~~~~~l~~~i~~lL~ 225 (227)
.+.|+++|.|..-+.| ..+.+++++.|++.+.
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHT
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHH
Confidence 5899999999876555 4456678888777664
No 287
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=32.26 E-value=2.5e+02 Score=24.80 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=6.5
Q ss_pred EEEECCCCcEE
Q 027134 194 KFLVDKEGNVV 204 (227)
Q Consensus 194 ~~lid~~G~I~ 204 (227)
..++|.+|+++
T Consensus 246 ~~~vD~~G~~i 256 (440)
T PRK14323 246 ALFVDRRGRLF 256 (440)
T ss_pred eEEECCCCcEe
Confidence 45566666554
No 288
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=32.09 E-value=2.3e+02 Score=21.52 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=21.3
Q ss_pred EecCCCCcchHhHHHHHHHHHHHh
Q 027134 96 NVASQCGLTNSNYTELSQLYDKYK 119 (227)
Q Consensus 96 F~aswC~~C~~~~~~l~~l~~~~~ 119 (227)
|+..-||.|-...+.|.++.++++
T Consensus 4 ~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 4 WSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EecCcCccHHHHHHHHHHHHHhCC
Confidence 447789999999999999999996
No 289
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=32.09 E-value=2.7e+02 Score=24.54 Aligned_cols=11 Identities=45% Similarity=0.773 Sum_probs=6.9
Q ss_pred EEEECCCCcEE
Q 027134 194 KFLVDKEGNVV 204 (227)
Q Consensus 194 ~~lid~~G~I~ 204 (227)
..++|.+|+++
T Consensus 242 ~~~vd~~G~~i 252 (434)
T cd05802 242 VIAVDEKGNIV 252 (434)
T ss_pred EEEECCCCCEe
Confidence 45667777654
No 290
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=31.93 E-value=1.8e+02 Score=23.57 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCC
Q 027134 108 YTELSQLYDKYKNQGLEILAFPCNQ 132 (227)
Q Consensus 108 ~~~l~~l~~~~~~~~~~vl~Vs~D~ 132 (227)
...|.++..++.+.|+.|++|..|.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~ 219 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDM 219 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 5667788888888999999999994
No 291
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=31.02 E-value=1.8e+02 Score=19.94 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=32.2
Q ss_pred CEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeC
Q 027134 90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (227)
Q Consensus 90 k~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 130 (227)
+.+|++|- ..+..-...+..|.++.+.++.+|+.++-+++
T Consensus 49 ~~vIlD~s-~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~ 88 (117)
T PF01740_consen 49 KNVILDMS-GVSFIDSSGIQALVDIIKELRRRGVQLVLVGL 88 (117)
T ss_dssp SEEEEEET-TESEESHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred eEEEEEEE-eCCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 68999984 33455666788999999999999999999884
No 292
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=30.99 E-value=3e+02 Score=24.36 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=7.2
Q ss_pred eEEEECCCCcEE
Q 027134 193 SKFLVDKEGNVV 204 (227)
Q Consensus 193 ~~~lid~~G~I~ 204 (227)
+..++|.+|+++
T Consensus 248 R~~ivd~~G~~i 259 (448)
T PRK14315 248 RVIIVDEKGHVV 259 (448)
T ss_pred eEEEEcCCCcEe
Confidence 345667666654
No 293
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=30.95 E-value=49 Score=20.32 Aligned_cols=19 Identities=5% Similarity=-0.113 Sum_probs=14.1
Q ss_pred EEecCCCCcchHhHHHHHH
Q 027134 95 VNVASQCGLTNSNYTELSQ 113 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~ 113 (227)
.|+.++|+.|++..-.|.+
T Consensus 3 Ly~~~~s~~~~~~~~~L~~ 21 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAE 21 (74)
T ss_pred EEeCCCCcchHHHHHHHHH
Confidence 3557789999877766665
No 294
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=30.28 E-value=2.6e+02 Score=23.07 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeecc-CCCCchhhHHHhhhcCCCCCCCc
Q 027134 109 TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV-NGDNAAPLYKHLKSSKGGLFGDS 187 (227)
Q Consensus 109 ~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (227)
.-.+.+..+|.+++..+|-|+-++. .+...+-+.+ +...-.|.++ +|. .-+.-...|+.++....| +
T Consensus 100 SLVKA~~~e~~~~glrLVEV~k~dl-----~~Lp~l~~~L-r~~~~kFIlF--cDDLSFe~gd~~yK~LKs~LeG----~ 167 (287)
T COG2607 100 SLVKALLNEYADEGLRLVEVDKEDL-----ATLPDLVELL-RARPEKFILF--CDDLSFEEGDDAYKALKSALEG----G 167 (287)
T ss_pred HHHHHHHHHHHhcCCeEEEEcHHHH-----hhHHHHHHHH-hcCCceEEEE--ecCCCCCCCchHHHHHHHHhcC----C
Confidence 3466778888888999999975521 1222333333 2223445454 553 222234566666654321 6
Q ss_pred cccceeEEEECC
Q 027134 188 IKWNFSKFLVDK 199 (227)
Q Consensus 188 i~~~P~~~lid~ 199 (227)
+..-|.++|+=.
T Consensus 168 ve~rP~NVl~YA 179 (287)
T COG2607 168 VEGRPANVLFYA 179 (287)
T ss_pred cccCCCeEEEEE
Confidence 677788888743
No 295
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=29.97 E-value=1.6e+02 Score=19.22 Aligned_cols=36 Identities=3% Similarity=0.147 Sum_probs=23.1
Q ss_pred CCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEE
Q 027134 89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF 128 (227)
Q Consensus 89 gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~V 128 (227)
.++++|-|+.++|. .....+.++.+.+++. +.+..+
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~~~ 52 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFGHT 52 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEEEE
Confidence 56777888888876 3556666666666553 544443
No 296
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=28.24 E-value=2.9e+02 Score=24.53 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=5.7
Q ss_pred EEEECCCCcEE
Q 027134 194 KFLVDKEGNVV 204 (227)
Q Consensus 194 ~~lid~~G~I~ 204 (227)
..++|.+|+++
T Consensus 250 ~~~vd~~G~~i 260 (450)
T PRK14314 250 LIVVDEKGHIV 260 (450)
T ss_pred EEEECCCCcCc
Confidence 34556655443
No 297
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=28.16 E-value=64 Score=23.75 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=28.0
Q ss_pred EEEecCCCCcchH-------hHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 94 IVNVASQCGLTNS-------NYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 94 v~F~aswC~~C~~-------~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|.|-+|.|-.|.. .-..++++.++|...|+.|+-=+.|
T Consensus 33 vvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ae 77 (150)
T PF04723_consen 33 VVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAE 77 (150)
T ss_pred EEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCC
Confidence 4588999999974 2356788999998887766655544
No 298
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=27.86 E-value=14 Score=21.58 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=15.8
Q ss_pred CCCcchHhHHHHHHHHHHHhc
Q 027134 100 QCGLTNSNYTELSQLYDKYKN 120 (227)
Q Consensus 100 wC~~C~~~~~~l~~l~~~~~~ 120 (227)
.|.||+.-.+.|.++.++..+
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCcHhHHHHHHHHHHHHHc
Confidence 677999988999888887754
No 299
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=27.64 E-value=1e+02 Score=22.43 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=28.1
Q ss_pred HHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccce
Q 027134 113 QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF 159 (227)
Q Consensus 113 ~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (227)
++.++++++ ++|++++... +.+.+.+.+ ++|++.|-.+
T Consensus 16 dVi~~~~d~-f~v~~Lsa~~-------n~~~L~~q~-~~f~p~~v~i 53 (129)
T PF02670_consen 16 DVIRKHPDK-FEVVALSAGS-------NIEKLAEQA-REFKPKYVVI 53 (129)
T ss_dssp HHHHHCTTT-EEEEEEEESS-------THHHHHHHH-HHHT-SEEEE
T ss_pred HHHHhCCCc-eEEEEEEcCC-------CHHHHHHHH-HHhCCCEEEE
Confidence 445566665 9999999875 888888888 6778887665
No 300
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=27.45 E-value=2.7e+02 Score=23.65 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=7.2
Q ss_pred eEEEECCCCcEE
Q 027134 193 SKFLVDKEGNVV 204 (227)
Q Consensus 193 ~~~lid~~G~I~ 204 (227)
+..++|++|+++
T Consensus 187 Rl~~vd~~G~~l 198 (355)
T cd03084 187 RLIVVDENGGFL 198 (355)
T ss_pred eeEEECCCCcee
Confidence 346666666655
No 301
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=27.20 E-value=2.4e+02 Score=20.79 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=22.6
Q ss_pred ceeEEEECCCCcEEEecC-CCCChhhHHHHHHHHhh
Q 027134 191 NFSKFLVDKEGNVVERYA-PTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 191 ~P~~~lid~~G~I~~~~~-g~~~~~~l~~~i~~lL~ 225 (227)
-|...++|.+|++..... -.-+-+.+++.+.+-++
T Consensus 117 ~P~l~llDadgk~kE~lsI~kWntdtl~eff~ekle 152 (154)
T KOG3384|consen 117 DPVLKLLDADGKHKESLSIDKWNTDTLEEFFREKLE 152 (154)
T ss_pred CCeeEeecCCCCccceeeecccChHHHHHHHHHHhc
Confidence 388999999999876532 11134457776665544
No 302
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=27.18 E-value=2.3e+02 Score=21.03 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=42.8
Q ss_pred hHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCC
Q 027134 105 NSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF 184 (227)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 184 (227)
.....-|++-.++++..+-.=+.||++ +.+.++... ......++ ....+++..+.+
T Consensus 72 ~~S~~WL~~~~~~L~~l~AvGlVVNV~--------t~~~L~~Lr--~lapgl~l---~P~sgddLA~rL----------- 127 (142)
T PF11072_consen 72 PLSRQWLQQNAEELKQLGAVGLVVNVA--------TEAALQRLR--QLAPGLPL---LPVSGDDLARRL----------- 127 (142)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHH--HHcCCCee---cCCCHHHHHHHh-----------
Confidence 345667888888888877888888887 677777654 21222222 234455555444
Q ss_pred CCccccceeEEEECCCC
Q 027134 185 GDSIKWNFSKFLVDKEG 201 (227)
Q Consensus 185 ~~~i~~~P~~~lid~~G 201 (227)
+++|+|. +|..+|
T Consensus 128 --~l~HYPv--LIt~~g 140 (142)
T PF11072_consen 128 --GLSHYPV--LITATG 140 (142)
T ss_pred --CCCcccE--EeecCC
Confidence 8888886 454444
No 303
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=27.04 E-value=2.1e+02 Score=25.34 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=7.3
Q ss_pred eEEEECCCCcEE
Q 027134 193 SKFLVDKEGNVV 204 (227)
Q Consensus 193 ~~~lid~~G~I~ 204 (227)
+..++|++|+++
T Consensus 239 R~~ivd~~G~~l 250 (445)
T PRK09542 239 RCFVVDERGQPV 250 (445)
T ss_pred eEEEECCCCCCc
Confidence 346667777663
No 304
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=27.02 E-value=62 Score=20.41 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.5
Q ss_pred cCCCccCCeEEecCCCCeeecCC
Q 027134 64 QSKTSVHDFSVKDAKGQDVDLSI 86 (227)
Q Consensus 64 ~~g~~~p~f~l~~~~G~~v~l~~ 86 (227)
.+|+++-+++++|.+|+.++++.
T Consensus 31 NvgQP~ENWElkDe~G~vlD~~k 53 (76)
T PF10790_consen 31 NVGQPPENWELKDESGQVLDVNK 53 (76)
T ss_pred ccCCCcccceeeccCCcEeeccc
Confidence 68999999999999999888754
No 305
>PRK12359 flavodoxin FldB; Provisional
Probab=26.78 E-value=2.3e+02 Score=21.58 Aligned_cols=9 Identities=11% Similarity=0.232 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 027134 215 SIEKDIKKL 223 (227)
Q Consensus 215 ~l~~~i~~l 223 (227)
.+++.++++
T Consensus 156 ri~~W~~~~ 164 (172)
T PRK12359 156 RIQQWCEQI 164 (172)
T ss_pred HHHHHHHHH
Confidence 344444443
No 306
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=26.72 E-value=3e+02 Score=21.19 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=36.8
Q ss_pred cCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCc
Q 027134 98 ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156 (227)
Q Consensus 98 aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (227)
++-|..--..-..+.++.+++.=++..+|+|+-+. |.-.+..++|+++.+.-..
T Consensus 43 ~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvsv~~~~-----pk~del~akF~~EH~H~d~ 96 (181)
T COG1791 43 AEKEHIIDAYETEIDRLIRERGYKNRDVVSVSPSN-----PKLDELRAKFLQEHLHTDD 96 (181)
T ss_pred cchhhhHhhHHHHHHHHHHhhCCceeeEEEeCCCC-----ccHHHHHHHHHHHhccCCc
Confidence 55666444456678888888877779999998653 4456777888854444333
No 307
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=26.60 E-value=94 Score=21.94 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=29.8
Q ss_pred ccCCeEEec-CCCCe---eecCCCCCCEEEEEEecCCCCcchHhHHHH
Q 027134 68 SVHDFSVKD-AKGQD---VDLSIYKGKLLLIVNVASQCGLTNSNYTEL 111 (227)
Q Consensus 68 ~~p~f~l~~-~~G~~---v~l~~~~gk~vlv~F~aswC~~C~~~~~~l 111 (227)
.+|.-+|-. ++++. +.+.+..|...+|.=-.+-|+.|+-.|...
T Consensus 41 gFP~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~ 88 (118)
T PF14427_consen 41 GFPESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRA 88 (118)
T ss_pred CCchhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHh
Confidence 466666655 34443 334555699999988899999998665443
No 308
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=26.25 E-value=1.8e+02 Score=18.38 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCCeeecCCCCCCEEEEEEecCCCCcchHhHHHH
Q 027134 78 KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTEL 111 (227)
Q Consensus 78 ~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l 111 (227)
+|-.+.+-++.+..+.|.|.. -|..|......+
T Consensus 15 dGGdv~lv~v~~~~V~V~l~G-aC~gC~~s~~Tl 47 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLTG-ACSGCPSSDMTL 47 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEES-SCCSSCCHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEEe-CCCCCCCHHHHH
Confidence 677788888877788888853 455565544444
No 309
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=26.07 E-value=4.9e+02 Score=23.48 Aligned_cols=55 Identities=15% Similarity=-0.003 Sum_probs=33.8
Q ss_pred EecCCCCeeecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEE-eCCCC
Q 027134 74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF-PCNQF 133 (227)
Q Consensus 74 l~~~~G~~v~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~V-s~D~~ 133 (227)
+.+.+|..+..++-+ . ..|++.-..|.-..-.-.-..+++...|+++|.| ++|..
T Consensus 196 ~~~~sg~~~~~~~~~--~---~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL 251 (472)
T COG4284 196 LLSDSGLPFLESDDS--N---LAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNL 251 (472)
T ss_pred eecccCccccccCCc--c---cccCCCCCccHHHHHHhcchHHHHHhcCceEEEEeccccc
Confidence 555666666666632 3 4666655567633332223777888889999988 56643
No 310
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=25.98 E-value=2.5e+02 Score=25.52 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=37.6
Q ss_pred CCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhc--CCcEEEEEeCCC
Q 027134 87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCNQ 132 (227)
Q Consensus 87 ~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~D~ 132 (227)
..+..++|.|.||..-..++.+|.|-+++..-.- +++.|++++-..
T Consensus 14 ~~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lpp~~~~IiG~aR~~ 61 (491)
T PLN02539 14 ETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLPPDEVHIFGYARSK 61 (491)
T ss_pred CCCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCcEEEEEECCC
Confidence 3456788999999988999999999999877443 469999998764
No 311
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=25.60 E-value=64 Score=19.02 Aligned_cols=19 Identities=5% Similarity=-0.213 Sum_probs=13.4
Q ss_pred EecCCCCcchHhHHHHHHH
Q 027134 96 NVASQCGLTNSNYTELSQL 114 (227)
Q Consensus 96 F~aswC~~C~~~~~~l~~l 114 (227)
|+..+||.|.+....|+..
T Consensus 4 y~~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 4 YYFPGSPRSLRVRLALEEK 22 (71)
T ss_pred EeCCCCccHHHHHHHHHHc
Confidence 4567899998766666553
No 312
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=25.34 E-value=4.2e+02 Score=23.37 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=6.2
Q ss_pred EEEECCCCcEE
Q 027134 194 KFLVDKEGNVV 204 (227)
Q Consensus 194 ~~lid~~G~I~ 204 (227)
..++|++|+++
T Consensus 245 ~~~vd~~G~~l 255 (443)
T TIGR01455 245 VLAVDANGRIV 255 (443)
T ss_pred EEEECCCCcEe
Confidence 45556666554
No 313
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=25.12 E-value=2.2e+02 Score=21.09 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=43.3
Q ss_pred CCeEEecCCCCeeecCCC-CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeC
Q 027134 70 HDFSVKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130 (227)
Q Consensus 70 p~f~l~~~~G~~v~l~~~-~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 130 (227)
-++.|.+..|..+++++. +.+.-++...|+.-.+=...+..++.+++-+++..+.+.++.+
T Consensus 38 e~l~l~~~~~~~v~l~~~~~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL 99 (142)
T PF07801_consen 38 EDLKLLDNPGPFVDLSSSSKNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGL 99 (142)
T ss_pred hhhhhccCCCcceecccccccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 345577778889998885 4444444455666667777788888888888886677777766
No 314
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=25.00 E-value=22 Score=26.14 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=12.6
Q ss_pred cCCCCcchHhHHHHH
Q 027134 98 ASQCGLTNSNYTELS 112 (227)
Q Consensus 98 aswC~~C~~~~~~l~ 112 (227)
-..||.|+..+|.|.
T Consensus 9 ei~CPhCRQ~ipALt 23 (163)
T TIGR02652 9 EIRCPHCRQNIPALT 23 (163)
T ss_pred cCcCchhhcccchhe
Confidence 348999999999875
No 315
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=24.99 E-value=71 Score=24.13 Aligned_cols=35 Identities=6% Similarity=-0.073 Sum_probs=26.5
Q ss_pred EecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 96 NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 96 F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|+..-||.|-...+.|.++.++++-. +++..+.++
T Consensus 4 ~~D~~cP~cy~~~~~l~~~~~~~~~~-i~~~p~~l~ 38 (192)
T cd03022 4 YFDFSSPYSYLAHERLPALAARHGAT-VRYRPILLG 38 (192)
T ss_pred EEeCCChHHHHHHHHHHHHHHHhCCe-eEEeeeeHH
Confidence 44779999999999999999988533 666565443
No 316
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=24.72 E-value=22 Score=26.09 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=12.1
Q ss_pred CCCCcchHhHHHHH
Q 027134 99 SQCGLTNSNYTELS 112 (227)
Q Consensus 99 swC~~C~~~~~~l~ 112 (227)
..||.|+..+|.|.
T Consensus 7 i~CPhCRq~ipALt 20 (161)
T PF09654_consen 7 IQCPHCRQTIPALT 20 (161)
T ss_pred CcCchhhcccchhe
Confidence 47999999999875
No 317
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=24.49 E-value=35 Score=21.67 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.5
Q ss_pred eEEEECCCCcEEEe
Q 027134 193 SKFLVDKEGNVVER 206 (227)
Q Consensus 193 ~~~lid~~G~I~~~ 206 (227)
..|.||++|++...
T Consensus 20 v~~~I~~~G~v~~~ 33 (79)
T PF03544_consen 20 VEFTIDPDGRVSDV 33 (79)
T ss_dssp EEEEEETTTEEEEE
T ss_pred EEEEEeCCCCEEEE
Confidence 46899999998764
No 318
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=24.47 E-value=82 Score=26.25 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=12.7
Q ss_pred ecCCCCcchHhHHHHHHHHHHH
Q 027134 97 VASQCGLTNSNYTELSQLYDKY 118 (227)
Q Consensus 97 ~aswC~~C~~~~~~l~~l~~~~ 118 (227)
.-+|||.|-... .++.+.+.+
T Consensus 16 ~~~~CpGCg~~~-il~~l~~al 36 (286)
T PRK11867 16 EPRWCPGCGDGS-ILAALQRAL 36 (286)
T ss_pred CCCcCCCCCCHH-HHHHHHHHH
Confidence 346999996443 455555544
No 319
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=24.21 E-value=3.9e+02 Score=21.65 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=42.2
Q ss_pred CCCeeecCCC-------CCCEEEEEEecCC-CCc-chHhHHHHHHHHHHHhcC---CcEEEEEeCCCCCCCCCCCHHHHH
Q 027134 78 KGQDVDLSIY-------KGKLLLIVNVASQ-CGL-TNSNYTELSQLYDKYKNQ---GLEILAFPCNQFGAQEPGDNEQIQ 145 (227)
Q Consensus 78 ~G~~v~l~~~-------~gk~vlv~F~asw-C~~-C~~~~~~l~~l~~~~~~~---~~~vl~Vs~D~~~~~~~~~~~~~~ 145 (227)
.++.++|++- -.++|-|.++.+- -+. -......+.++.++|+.. ++.+-.|..+. +.+..+
T Consensus 6 ~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~-------~~~~~~ 78 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDE-------NPSEAE 78 (271)
T ss_pred CCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCC-------ChHHHH
Confidence 4555666552 1345556666443 333 345556666777777542 48888887543 455666
Q ss_pred HHHHhhCCCCccce
Q 027134 146 EFACTRFKAEFPIF 159 (227)
Q Consensus 146 ~~~~~~~~~~~~~~ 159 (227)
+.+ .++|+....+
T Consensus 79 ~~~-~~~Gi~~~~~ 91 (271)
T PF09822_consen 79 EKA-KEYGIQPVQI 91 (271)
T ss_pred HHH-HhcCCCccce
Confidence 655 5677765443
No 320
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=24.12 E-value=2.8e+02 Score=23.47 Aligned_cols=93 Identities=18% Similarity=0.294 Sum_probs=47.7
Q ss_pred ecCCCCCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeee
Q 027134 83 DLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV 162 (227)
Q Consensus 83 ~l~~~~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (227)
++.+-.|+|.+| -.||. +.-+... .++..+|+.|+-|+-+. +..+++++-+.++++..-.... .
T Consensus 43 ~~~~~~g~WAVV-TGaTD-GIGKayA-------~eLAkrG~nvvLIsRt~------~KL~~v~kEI~~~~~vev~~i~-~ 106 (312)
T KOG1014|consen 43 DLKEKLGSWAVV-TGATD-GIGKAYA-------RELAKRGFNVVLISRTQ------EKLEAVAKEIEEKYKVEVRIIA-I 106 (312)
T ss_pred chHHhcCCEEEE-ECCCC-cchHHHH-------HHHHHcCCEEEEEeCCH------HHHHHHHHHHHHHhCcEEEEEE-E
Confidence 344445677766 33443 5555444 34445788888888652 2445555555456564333322 4
Q ss_pred ccCCCCchhhHHHhhhcCCCCCCCccccceeEEEECCCC
Q 027134 163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG 201 (227)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~~~lid~~G 201 (227)
|....+. .|..+.. .+..+|-.+||+-=|
T Consensus 107 Dft~~~~--~ye~i~~--------~l~~~~VgILVNNvG 135 (312)
T KOG1014|consen 107 DFTKGDE--VYEKLLE--------KLAGLDVGILVNNVG 135 (312)
T ss_pred ecCCCch--hHHHHHH--------HhcCCceEEEEeccc
Confidence 5544432 4544433 223345556665433
No 321
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=23.80 E-value=1e+02 Score=19.87 Aligned_cols=32 Identities=9% Similarity=0.357 Sum_probs=16.3
Q ss_pred eEEEECCCCcEEEecC-CCCChhhHHHHHHHHh
Q 027134 193 SKFLVDKEGNVVERYA-PTTSPLSIEKDIKKLL 224 (227)
Q Consensus 193 ~~~lid~~G~I~~~~~-g~~~~~~l~~~i~~lL 224 (227)
..+-||++|+|+.... .......+.+.+.+.|
T Consensus 30 V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai 62 (85)
T PF13103_consen 30 VRITIDPDGRVISVRIVKSSGNPAFDAAVRRAI 62 (85)
T ss_dssp EEEEE-TTSBEEEEEEEE--S-HHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEecCCCCHHHHHHHHHHH
Confidence 4688999999954322 2222334555555444
No 322
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=23.68 E-value=1.9e+02 Score=17.74 Aligned_cols=19 Identities=0% Similarity=-0.178 Sum_probs=13.3
Q ss_pred EEecCCCCcchHhHHHHHH
Q 027134 95 VNVASQCGLTNSNYTELSQ 113 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~ 113 (227)
.|+.++|+.|++..-.|.+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~ 21 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKA 21 (74)
T ss_pred EEeCCCCCcHHHHHHHHHH
Confidence 3557899999866655554
No 323
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=23.67 E-value=1.2e+02 Score=18.72 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.0
Q ss_pred eEEEECCCCcEEEec
Q 027134 193 SKFLVDKEGNVVERY 207 (227)
Q Consensus 193 ~~~lid~~G~I~~~~ 207 (227)
-.|.||++|++....
T Consensus 14 v~~~i~~~G~v~~~~ 28 (74)
T TIGR01352 14 VRFTVDADGRVTSVS 28 (74)
T ss_pred EEEEECCCCCEEEEE
Confidence 469999999987653
No 324
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=23.43 E-value=3.9e+02 Score=23.70 Aligned_cols=12 Identities=42% Similarity=0.515 Sum_probs=7.4
Q ss_pred eEEEECCCCcEE
Q 027134 193 SKFLVDKEGNVV 204 (227)
Q Consensus 193 ~~~lid~~G~I~ 204 (227)
+..++|.+|+++
T Consensus 238 R~~vvd~~G~~~ 249 (449)
T PRK14321 238 RIGVVDDQGNFV 249 (449)
T ss_pred eEEEECCCCCEe
Confidence 346667777665
No 325
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=23.40 E-value=4.9e+02 Score=23.03 Aligned_cols=12 Identities=50% Similarity=0.656 Sum_probs=7.6
Q ss_pred eEEEECCCCcEE
Q 027134 193 SKFLVDKEGNVV 204 (227)
Q Consensus 193 ~~~lid~~G~I~ 204 (227)
+..++|++|+++
T Consensus 247 R~~~vd~~G~~l 258 (448)
T PRK14318 247 RCLAVDANGNVV 258 (448)
T ss_pred eEEEECCCCcEe
Confidence 346667777654
No 326
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=23.36 E-value=16 Score=19.74 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=14.7
Q ss_pred CCCCcEEEecCCCCChhhHHHHHHHHh
Q 027134 198 DKEGNVVERYAPTTSPLSIEKDIKKLL 224 (227)
Q Consensus 198 d~~G~I~~~~~g~~~~~~l~~~i~~lL 224 (227)
||+|.|...+........-.+.+-++|
T Consensus 4 dpegqimk~yaadpeyrkh~~v~yqil 30 (38)
T PF02526_consen 4 DPEGQIMKAYAADPEYRKHLNVLYQIL 30 (38)
T ss_pred CchhHHHHHHhcCHHHHHHHHHHHHHH
Confidence 678888777664333333333444444
No 327
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=23.28 E-value=89 Score=23.02 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=26.8
Q ss_pred EEEecCCCCcchH-------hHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 94 IVNVASQCGLTNS-------NYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 94 v~F~aswC~~C~~-------~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
|.|-+|.|-.|.. .-..++++.++|...|+.|+-=+.|
T Consensus 34 vvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGaae 78 (154)
T PRK13265 34 VVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGAAE 78 (154)
T ss_pred EEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecccc
Confidence 4588999988864 2346778888888877666554443
No 328
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=23.20 E-value=69 Score=19.76 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=12.8
Q ss_pred EecCCCCcchHhHHHHHH
Q 027134 96 NVASQCGLTNSNYTELSQ 113 (227)
Q Consensus 96 F~aswC~~C~~~~~~l~~ 113 (227)
++..+||.|.+..-.|..
T Consensus 4 y~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 4 YIYEHCPFCVKARMIAGL 21 (71)
T ss_pred EecCCCcHhHHHHHHHHH
Confidence 457899999866655554
No 329
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=22.95 E-value=4e+02 Score=23.73 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=7.3
Q ss_pred eEEEECCCCcEE
Q 027134 193 SKFLVDKEGNVV 204 (227)
Q Consensus 193 ~~~lid~~G~I~ 204 (227)
+..++|.+|+++
T Consensus 260 R~~~vd~~G~~i 271 (465)
T PRK14317 260 RVLAVDGQGRVV 271 (465)
T ss_pred EEEEECCCCCEE
Confidence 345667777654
No 330
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=22.53 E-value=1.9e+02 Score=24.65 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=33.7
Q ss_pred CCCEEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEeCC
Q 027134 88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN 131 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs~D 131 (227)
.||+|++.|-...-|.++..+..+++..++..-.++-++++..+
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~~ 200 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQGS 200 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 59999887766555677778888888888866667888888753
No 331
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=22.35 E-value=2.8e+02 Score=19.38 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCCccceeeeccCCCCchhhHHHhhhcCCCCCC
Q 027134 106 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG 185 (227)
Q Consensus 106 ~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 185 (227)
....-|++-.++++..+..=+-||++ +.+.+++.. ..-...++. ...+++....+
T Consensus 35 ~S~~WL~~~~~~L~~l~AvGlVVnV~--------t~~~l~~Lr--~lapgl~l~---P~sgddLa~rL------------ 89 (105)
T TIGR03765 35 ASRQWLQQNAAALKSLGAVGLVVNVE--------TAAALQRLR--ALAPGLPLL---PVSGDDLAERL------------ 89 (105)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHH--HHcCCCccc---CCCHHHHHHHh------------
Confidence 34567788888888877777788887 677766643 212223332 33455455444
Q ss_pred CccccceeEEEECCCC
Q 027134 186 DSIKWNFSKFLVDKEG 201 (227)
Q Consensus 186 ~~i~~~P~~~lid~~G 201 (227)
+++|+|. +|..+|
T Consensus 90 -~l~hYPv--Lit~tg 102 (105)
T TIGR03765 90 -GLRHYPV--LITATG 102 (105)
T ss_pred -CCCcccE--EEecCc
Confidence 8888885 555555
No 332
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=22.19 E-value=1.7e+02 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=19.9
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHHHHHhh
Q 027134 192 FSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 225 (227)
Q Consensus 192 P~~~lid~~G~I~~~~~g~~~~~~l~~~i~~lL~ 225 (227)
|...++ .+|+++.+..+..-.+++...+++..+
T Consensus 320 ~~~~~f-~~g~~~~~~~~~~~~eel~~~i~~~~~ 352 (361)
T COG0821 320 GSGPVF-VKGEIIKKLPEEDIVEELEALIEAYAE 352 (361)
T ss_pred CeeEEE-ECCeEEEecChhhHHHHHHHHHHHHHH
Confidence 344555 469988886654445556666655543
No 333
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=21.53 E-value=3.6e+02 Score=23.79 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=5.9
Q ss_pred EEEECCCCcEE
Q 027134 194 KFLVDKEGNVV 204 (227)
Q Consensus 194 ~~lid~~G~I~ 204 (227)
..++|++|+++
T Consensus 239 ~~ivd~~G~~l 249 (443)
T cd03089 239 LGVVDEKGEII 249 (443)
T ss_pred eEEECCCCcEe
Confidence 45556666543
No 334
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=21.30 E-value=55 Score=20.95 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.2
Q ss_pred eEEEECCCCcEEEec
Q 027134 193 SKFLVDKEGNVVERY 207 (227)
Q Consensus 193 ~~~lid~~G~I~~~~ 207 (227)
..||+|++|++++.-
T Consensus 55 ~~~ivd~~G~ii~hp 69 (81)
T PF02743_consen 55 YAFIVDKNGTIIAHP 69 (81)
T ss_dssp EEEEEETTSBBCE-S
T ss_pred EEEEEECCCCEEEeC
Confidence 579999999998764
No 335
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.29 E-value=93 Score=24.22 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=29.9
Q ss_pred EEEEEEecCCCCcchHhHHHHHHHHHHHhcCCcEEEEEe
Q 027134 91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129 (227)
Q Consensus 91 ~vlv~F~aswC~~C~~~~~~l~~l~~~~~~~~~~vl~Vs 129 (227)
..++.||...|+.-.....++.+|....+..|+.|+.-.
T Consensus 40 ~YFv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa 78 (218)
T COG1535 40 NYFVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTA 78 (218)
T ss_pred HhhcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 345678888888777777888888888888888777643
No 336
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=20.60 E-value=89 Score=19.19 Aligned_cols=19 Identities=5% Similarity=-0.041 Sum_probs=13.3
Q ss_pred EEecCCCCcchHhHHHHHH
Q 027134 95 VNVASQCGLTNSNYTELSQ 113 (227)
Q Consensus 95 ~F~aswC~~C~~~~~~l~~ 113 (227)
.|...+||.|.+..-.|.+
T Consensus 3 ly~~~~~~~~~~v~~~l~~ 21 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAE 21 (73)
T ss_pred EEECCCChhHHHHHHHHHH
Confidence 3557789999877666543
No 337
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.57 E-value=1.2e+02 Score=20.45 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=15.1
Q ss_pred eEEEECCCCcEEEecCCC
Q 027134 193 SKFLVDKEGNVVERYAPT 210 (227)
Q Consensus 193 ~~~lid~~G~I~~~~~g~ 210 (227)
..++.||+|+.+..+.|.
T Consensus 93 ~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEEECCCCCEEEEecCC
Confidence 368999999999888764
No 338
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=20.35 E-value=2.9e+02 Score=24.13 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=39.0
Q ss_pred CCCEEEEEEecCCCCc----chHhHHHHHHHHHHHhcCCcEEEEEeCCCCCCCCCCCHHHHHHHHHhhCCCC
Q 027134 88 KGKLLLIVNVASQCGL----TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE 155 (227)
Q Consensus 88 ~gk~vlv~F~aswC~~----C~~~~~~l~~l~~~~~~~~~~vl~Vs~D~~~~~~~~~~~~~~~~~~~~~~~~ 155 (227)
..+...|-||-++|.. =+..-...+..+++|++....|.+=..|. +++++..-++.+|+++
T Consensus 40 ~k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~-------t~~~IL~k~k~~F~id 104 (465)
T KOG1387|consen 40 EKNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNV-------TPENILNKVKNKFDID 104 (465)
T ss_pred hhhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCC-------CHHHHHHHHHHhcCce
Confidence 3345567788999973 23444667788889887433443333333 7888877776777654
No 339
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=20.32 E-value=6e+02 Score=22.41 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=7.0
Q ss_pred eEEEECCCCcEE
Q 027134 193 SKFLVDKEGNVV 204 (227)
Q Consensus 193 ~~~lid~~G~I~ 204 (227)
+..++|++|+++
T Consensus 246 R~~ivd~~G~~i 257 (445)
T cd05803 246 RLALVDEDGRPI 257 (445)
T ss_pred eEEEECCCCCCc
Confidence 345667666654
No 340
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.21 E-value=1.9e+02 Score=25.03 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=16.6
Q ss_pred EEEECCCCcEEEecCCCCChhhHHHHHHHH
Q 027134 194 KFLVDKEGNVVERYAPTTSPLSIEKDIKKL 223 (227)
Q Consensus 194 ~~lid~~G~I~~~~~g~~~~~~l~~~i~~l 223 (227)
-+++=..|+++.+.....--+++.+.|++.
T Consensus 327 ~~~vf~~Gk~v~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 327 KGPVFVDGEKIKTLPEENIVEELEAEIEAY 356 (360)
T ss_pred ceEEEECCEEeeeeChHhHHHHHHHHHHHH
Confidence 355557899998765322223344444444
No 341
>PRK06756 flavodoxin; Provisional
Probab=20.02 E-value=3.1e+02 Score=19.74 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=17.3
Q ss_pred CCCCCEEEEEEecCCC-C-cchHhHHHHHHHHHHHhcCCcEEEE
Q 027134 86 IYKGKLLLIVNVASQC-G-LTNSNYTELSQLYDKYKNQGLEILA 127 (227)
Q Consensus 86 ~~~gk~vlv~F~aswC-~-~C~~~~~~l~~l~~~~~~~~~~vl~ 127 (227)
+++||++.++-.+.|. + .|. .+..+.+.+++.|+.+++
T Consensus 80 ~l~~k~~~~fgt~~~~y~~~~~----a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 80 DLTGKKAAVFGSCDSAYPKYGV----AVDILIEKLQERGAAVVL 119 (148)
T ss_pred CCCCCEEEEEeCCCCchHHHHH----HHHHHHHHHHHCCCEEcC
Confidence 4567776653222222 1 232 234444555555555543
Done!