BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027136
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
D++G T L L A G L ++VL+K ++ N P+H AAY GH + LL+
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLK- 93
Query: 150 THGVDI 155
HG D+
Sbjct: 94 -HGADV 98
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
D GYT L L A G+L ++VL+K + N +++ G P+H AA GH + LL
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG---ITPLHLAAATGHLEIVEVLL 100
Query: 148 EVTHGVDIYS-GNDG 161
+ HG D+ + NDG
Sbjct: 101 K--HGADVNAYDNDG 113
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+DE+G T L+L G+L ++VL+K ++ N + P+H AA+ GH + LL+
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Query: 149 VTHGVDI 155
HG D+
Sbjct: 102 --HGADV 106
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 66 ESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGG 125
+ DE L+ A+ D L DE G T L L A G+L ++VL+K ++ N
Sbjct: 26 QDDEVRILM---ANGADVNAL---DEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDN 78
Query: 126 LDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYS 157
P+H AA +GH + LL+ HG D+ +
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLK--HGADVNA 108
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D++G T L L A G+L +K+L++ ++ N + P+H AA GH + LLE
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 149 VTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKL 183
G D+ + + R L L A N + L+++KL
Sbjct: 90 A--GADVNAKDKNGRTPLHLAARNGH---LEVVKL 119
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG 152
G T L L A G+L +K+L++ ++ N + P+H AA GH + LLE G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA--G 58
Query: 153 VDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRD 190
D+ + + R L L A N + L+++KL G D
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGH---LEVVKLLLEAGAD 93
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D++G T L L A G+L +K+L++ ++ N + P+H AA GH + LLE
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 149 V 149
Sbjct: 123 A 123
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
D G T L L A G+ +K+L+ +PN + G P+H AA GHK + LL
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG---KTPLHLAAENGHKEVVKLLL 90
Query: 148 EVTHGVDIYSGNDGARVLLLLIAANLYDVALDLL 181
+ G D + + + L L A N + + LL
Sbjct: 91 --SQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 77 LASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEA 134
L+ DP +D G T L L A G+ +K+L+ +PN + G P+H A
Sbjct: 57 LSQGADPNA---KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG---KTPLHLA 110
Query: 135 AYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL 168
A GHK + LL + G D + + R L L
Sbjct: 111 AENGHKEVVKLLL--SQGADPNTSDSDGRTPLDL 142
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D G+T L L A G+L ++VL+K ++ N + P+H AA +GH + LL+
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 149 VTHGVDIYS 157
HG D+ +
Sbjct: 135 --HGADVNA 141
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D+ GYT L L A +G+L ++VL+K ++ N + P+H AA +GH + LL+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 149 VTHGVDI 155
G D+
Sbjct: 90 A--GADV 94
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
+D+ GYT L L A +G+L ++VL+K ++ N + P A +GH++ + L
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D+ GYT L L A +G+L ++VL+K ++ N + P+H AA +GH + LL+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 149 VTHGVDIYS 157
G D+ +
Sbjct: 90 A--GADVNA 96
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
+D+ GYT L L A +G+L ++VL+K ++ N + P A G+++ + L
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D+ GYT L L A +G+L ++VL+K ++ N + P+H AA +GH + LL+
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 149 VTHGVDI 155
G D+
Sbjct: 102 A--GADV 106
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLT 120
+D+ GYT L L A +G+L ++VL+K ++
Sbjct: 109 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG 152
G + L L A G+ +VL++ + + R +D P+H AA +GH N + LL+ HG
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLK--HG 90
Query: 153 VDI 155
D+
Sbjct: 91 ADV 93
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 78 ASKVDPQTLAR---------QDEHGYTALFLCAGKGNLRALKVLVKCNPNL--TNIRGGL 126
A K D Q L++ DE+G TAL AG G+ + +++L + +L ++RGGL
Sbjct: 52 ARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 111
Query: 127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPT 186
L H AA + L+E+ G DI ++ R L L ++A ++LK P
Sbjct: 112 TAL--HMAAGYVRPEVVEALVEL--GADIEVEDE--RGLTAL------ELAREILKTTPK 159
Query: 187 IGRDSIDSRRIVLNKL 202
G RRI L K+
Sbjct: 160 -GNPMQFGRRIGLEKV 174
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 78 ASKVDPQTLAR---------QDEHGYTALFLCAGKGNLRALKVLVKCNPNL--TNIRGGL 126
A K D Q L++ DE+G TAL AG G+ + +++L + +L ++RGGL
Sbjct: 53 ARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 112
Query: 127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPT 186
L H AA + L+E+ G DI ++ R L L ++A ++LK P
Sbjct: 113 TAL--HMAAGYVRPEVVEALVEL--GADIEVEDE--RGLTAL------ELAREILKTTPK 160
Query: 187 IGRDSIDSRRIVLNKL 202
G RRI L K+
Sbjct: 161 -GNPMQFGRRIGLEKV 175
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 86 LARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
L + D+HG++ L +G +++L+ + + G DT P+H AA GH++ Q
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT-PLHLAASHGHRDIVQK 85
Query: 146 LLEVTHGVDIYSGNDGARVLL 166
LL+ + DI + N+ V L
Sbjct: 86 LLQ--YKADINAVNEHGNVPL 104
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 86 LARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
L + D+HG++ L +G +++L+ + + G DT P+H AA GH++ Q
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT-PLHLAASHGHRDIVQK 90
Query: 146 LLEVTHGVDIYSGNDGARVLL 166
LL+ + DI + N+ V L
Sbjct: 91 LLQ--YKADINAVNEHGNVPL 109
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
D +G T L L A G+L ++VL+K ++ N + P++ AAY GH + LL+
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK- 122
Query: 150 THGVDI 155
HG D+
Sbjct: 123 -HGADV 127
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
D +G T L + A G+L ++VL++ + N + G T P+H AA GH + LL
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG---TTPLHLAASLGHLEIVEVLL 88
Query: 148 EVTHGVDIYSGNDGARVLLLLIAA 171
+ +G D+ + D + L +AA
Sbjct: 89 K--YGADV-NAKDATGITPLYLAA 109
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
D+ G T L L A +G+L ++VL+K + N ++I G P+H AA GH + LL
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG---RTPLHLAATVGHLEIVEVLL 100
Query: 148 EVTHGVDIYS 157
E +G D+ +
Sbjct: 101 E--YGADVNA 108
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
D+ G T L L A +G+L ++VL+K ++ N R P+H AA GH + LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLE- 101
Query: 150 THGVDIYS 157
+G D+ +
Sbjct: 102 -YGADVNA 108
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D G+T L L A G+L ++VL+K ++ N + L P+H AA +GH + LL+
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLK 101
Query: 149 VTHGVDIYS 157
+G D+ +
Sbjct: 102 --NGADVNA 108
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D G T L L A +G+L ++VL+K ++ N P+H AA +GH + LL+
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 149 VTHGVDIYS 157
+G D+ +
Sbjct: 135 --NGADVNA 141
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
QD G + + A G L LKVLV+ ++ N+ G LPIH A +GH +L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFL 126
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
GYT L + + GN++ +K L++ ++ N + L P+H+AA +GH + LL+
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 77 LASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEA 134
L +K A+ D+ T L A G+ +K+L++ NPNL G P+H A
Sbjct: 67 LQNKAKVNAKAKDDQ---TPLHCAARIGHTNMVKLLLENNANPNLATTAG---HTPLHIA 120
Query: 135 AYKGHKNTFQYLLE 148
A +GH T LLE
Sbjct: 121 AREGHVETVLALLE 134
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 95 TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
T L + A G+ K L++ N N + D P+H AA GH N + LLE
Sbjct: 49 TPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
D G T L A G+ +K+L+ ++ N + P+H AA GHK + L +
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLL--I 90
Query: 150 THGVDIYSGNDGARVLLLLIAANLYDVALDLL 181
+ G D+ + + R L A N + + LL
Sbjct: 91 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D G T L A G+ +K+L+ ++ N + P+H AA GHK + L
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLL-- 122
Query: 149 VTHGVDIYSGNDGARVLLLL 168
++ G D+ + + R L L
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 97 LFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIY 156
L A GN +K L++ ++ N P+H AA GHK + L ++ G D+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLL--ISKGADVN 64
Query: 157 SGNDGARVLLLLIAANLYDVALDLL 181
+ + R L A N + + LL
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLL 89
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
QD G + + A G L LKVLV+ ++ N+ G LPIH A +GH +L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFL 120
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
D +G T L L A G+L ++VL+K ++ N + P+H AAY GH + LL+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLK- 134
Query: 150 THGVDI 155
+G D+
Sbjct: 135 -YGADV 139
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG 152
G+T L L A G+L ++VL+K ++ N P+H AA GH + LL+ HG
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVLLK--HG 103
Query: 153 VDI 155
D+
Sbjct: 104 ADV 106
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG 152
G T L L A G+L +K+L++ ++ N + P+H AA GH + LLE G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA--G 58
Query: 153 VDIYSGNDGARVLLLLIAANLYDVALDLLKL 183
D+ + + R L L A N + L+++KL
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGH---LEVVKL 86
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D++G T L L A G+L +K+L++ ++ N + P+H AA GH + LLE
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 149 V 149
Sbjct: 90 A 90
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG 152
G+T L L A G+L ++VL+K ++ N G P+H AA+ H + LL+ HG
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVLLK--HG 103
Query: 153 VDIYS 157
D+ +
Sbjct: 104 ADVNA 108
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
D+ G T L L A +G+L ++VL+K ++ N P+H AA GH + LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLE- 101
Query: 150 THGVDIYS 157
+G D+ +
Sbjct: 102 -YGADVNA 108
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
D G+T L L A G+L ++VL+K ++ N L P+H AA +GH + LL+
Sbjct: 43 SDHVGWTPLHLAAYFGHLEIVEVLLKNGADV-NADDSLGVTPLHLAADRGHLEVVEVLLK 101
Query: 149 VTHGVDIYSGNDGARVLLLLIAANL 173
+G D+ + ND L +AAN+
Sbjct: 102 --NGADV-NANDHNGFTPLHLAANI 123
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 61 LLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPN 118
L+ E+ + D L + DP D G T L A G+ +K+L+ +PN
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNA---SDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 119 LTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVAL 178
+ G P+H AA GHK + LL + G D + + R L A N + +
Sbjct: 65 AKDSDG---RTPLHYAAENGHKEIVKLLL--SKGADPNAKDSDGRTPLHYAAENGHKEIV 119
Query: 179 DLL 181
LL
Sbjct: 120 KLL 122
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 77 LASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEA 134
L+ DP +D G T L A G+ +K+L+ +PN + G P+H A
Sbjct: 57 LSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG---RTPLHYA 110
Query: 135 AYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL 168
A GHK + LL + G D + + R L L
Sbjct: 111 AENGHKEIVKLLL--SKGADPNTSDSDGRTPLDL 142
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG 152
G+T L L A G+L ++VL+K ++ N L + P+H AA+ GH + LL+ +G
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLK--NG 103
Query: 153 VDIYSGNDGARVLLLLIAAN 172
D+ + +D + L +AAN
Sbjct: 104 ADVNAKDDNG-ITPLHLAAN 122
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
D G T L L A G+L ++VL+K ++ N + P+H AA +GH + LL+
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADV-NAKDDNGITPLHLAANRGHLEIVEVLLK- 134
Query: 150 THGVDI 155
+G D+
Sbjct: 135 -YGADV 139
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D G T L A +G+ +K+L+ ++ N + P+H AA +GHK + L
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLL-- 122
Query: 149 VTHGVDIYSGNDGARVLLLL 168
++ G D+ + + R L L
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
D G T L A +G+ +K+L+ ++ N + P+H AA +GHK + L +
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLL--I 90
Query: 150 THGVDIYSGNDGARVLLLLIAANLYDVALDLL 181
+ G D+ + + R L A + + LL
Sbjct: 91 SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
D +G+T L L A G+L ++VL+K + N ++ G + P+H AA +GH + LL
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTG---STPLHLAADEGHLEIVEVLL 133
Query: 148 EVTHGVDI 155
+ +G D+
Sbjct: 134 K--YGADV 139
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
D G T L L A G+L ++VL+K + + ++ G P+H AA GH + LL
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG---FTPLHLAAMTGHLEIVEVLL 100
Query: 148 EVTHGVDI 155
+ +G D+
Sbjct: 101 K--YGADV 106
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
D+ G+T L L A +G+L ++VL+K + N + +G P+H AA GH + L
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQG---YTPLHLAAEDGHLEIVEVL 132
Query: 147 LEVTHGVDI 155
L+ +G D+
Sbjct: 133 LK--YGADV 139
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
+D +G T L L A G+L ++VL+K + N + G + P+H AA +GH + L
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG---STPLHLAAKRGHLEIVEVL 99
Query: 147 LEVTHGVDI 155
L+ +G D+
Sbjct: 100 LK--YGADV 106
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 77 LASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAY 136
L + DP +D G+T L G+L+ +++L++ + L N G + P+H+AA
Sbjct: 30 LQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHDAAK 85
Query: 137 KGHKNTFQYLLE---VTHGVDI-------YSGNDGARVLLLLIAAN 172
GH + + LL + V+I Y+ ++ + LLLL N
Sbjct: 86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 81 VDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHK 140
+DP T R G T L + + KG++ +++ L++ N + N++ P+HEA GH
Sbjct: 2 IDPFTNHR----GETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHL 56
Query: 141 NTFQYLLE 148
+ LL+
Sbjct: 57 KVVELLLQ 64
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 88 RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
R + G TAL + A KG LK+L++ ++ NI+ P+H AA+ G + + L+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 148 E 148
E
Sbjct: 253 E 253
>pdb|2O7G|A Chain A, Crystal Structure Of The Pribnow Box Recognition Region Of
Sigc From Mycobacterium Tuberculosis
pdb|2O7G|B Chain B, Crystal Structure Of The Pribnow Box Recognition Region Of
Sigc From Mycobacterium Tuberculosis
Length = 112
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 21/94 (22%)
Query: 85 TLARQDEHGYTALFLCAGKGNLRALKVLVKCNPN--------LTNIRGGLDTLPIHEAAY 136
T D+ TAL L A KGN RAL+ +K L+++ G D L
Sbjct: 2 TATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDV-GSADDL------- 53
Query: 137 KGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIA 170
T + L + +S AR LL IA
Sbjct: 54 -----TQETFLRAIGAIPRFSARSSARTWLLAIA 82
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
QD G + + A G L LKVLV+ ++ N +LPIH A +GH + +L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
QD G + + A G L LKVLV+ ++ N +LPIH A +GH + +L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 91 EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT 150
E T L A +L A+K L+K L + + + +H AA KGH QYLL
Sbjct: 42 EDQRTPLMEAAENNHLEAVKYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLS-N 99
Query: 151 HGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRD 190
+D+ +DG +I A Y +DL+KL + G D
Sbjct: 100 GQMDVNCQDDGGWT--PMIWATEYK-HVDLVKLLLSKGSD 136
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D G+ + A G L L+ L++ ++ NI LP+H AA +GH ++L++
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 149 VT 150
T
Sbjct: 125 HT 126
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLV--KCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
+D + TA+ A KGNL+ + +L+ K + N+ + G P+H A + ++L
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG---NTPLHLACDEERVEEAKFL 191
Query: 147 LEVTHGVDIYSGNDGARVLLLLIAANL 173
VT G IY N + L + L
Sbjct: 192 --VTQGASIYIENKEEKTPLQVAKGGL 216
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
D GYT L L A G+L ++VL+K ++ N P+H AA G+ + LL+
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGADV-NAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 149 VTHGVDI 155
HG D+
Sbjct: 135 --HGADV 139
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 128 TLPIHEAAYKGHKNTFQYLLEVTHGVDI 155
T P+H AAY GH + LL+ HG D+
Sbjct: 48 TTPLHLAAYSGHLEIVEVLLK--HGADV 73
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLV--KCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
+D + TA+ A KGNL+ + +L+ K + N+ + G P+H A + ++L
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG---NTPLHLACDEERVEEAKFL 191
Query: 147 LEVTHGVDIYSGNDGARVLLLLIAANL 173
VT G IY N + L + L
Sbjct: 192 --VTQGASIYIENKEEKTPLQVAKGGL 216
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D G+ + A G L L+ L++ ++ NI LP+H AA +GH ++L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 149 VT 150
T
Sbjct: 125 HT 126
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D G+ + A G L L+ L++ ++ NI LP+H AA +GH ++L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 149 VT 150
T
Sbjct: 125 HT 126
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D G+ + A G L L+ L++ ++ NI LP+H AA +GH ++L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 149 VT 150
T
Sbjct: 125 HT 126
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLT----------NIRGGLDTLPIHEAAYKGH 139
D +G+TA A G ++ALK L K N+ +R G T + +AA KGH
Sbjct: 122 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKGH 180
Query: 140 KNTFQYLLEVTHGVDIYSGNDGARVLLL--LIAANLYDV 176
+ LL+ G D+ + ++ R L+ L++++ DV
Sbjct: 181 VEVLKILLD-EMGADVNACDNMGRNALIHALLSSDDSDV 218
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 73 LLDKLASKVDPQTLARQDEHGYTAL---FLCAGKGNLRALKVLVKCNPNLTNIRGGLDTL 129
LLD++ + V+ D G AL L + ++ A+ L+ + N+RG
Sbjct: 187 LLDEMGADVNAC-----DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 241
Query: 130 PIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVA 177
P+ A K H Q LLE H + +DG LLL + L +A
Sbjct: 242 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 289
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 77 LASKVDPQTLARQ-DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHE 133
LA++++ + + DE G+T L A G + ++ L++ +P L +G L +
Sbjct: 35 LATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSL-- 91
Query: 134 AAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLK--LHPTIGRDS 191
A KG+ + + LL+ V+ Y N G LL + N LL+ PTI DS
Sbjct: 92 ACSKGYTDIVKMLLDCGVDVNEYDWN-GGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 150
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLT----------NIRGGLDTLPIHEAAYKGH 139
D +G+TA A G ++ALK L K N+ +R G T + +AA KGH
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKGH 160
Query: 140 KNTFQYLLEVTHGVDIYSGNDGARVLLL--LIAANLYDV 176
+ LL+ G D+ + ++ R L+ L++++ DV
Sbjct: 161 VEVLKILLD-EMGADVNACDNMGRNALIHALLSSDDSDV 198
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 120 TNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVA 177
N+RG P+ A K H Q LLE H + +DG LLL + L +A
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 77 LASKVDPQTLARQ-DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHE 133
LA++++ + + DE G+T L A G + ++ L++ +P L +G L +
Sbjct: 17 LATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSL-- 73
Query: 134 AAYKGHKNTFQYLLEVTHGVDIYSGNDGARVL 165
A KG+ + + LL+ V+ Y N G +L
Sbjct: 74 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 105
>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 411
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 121 NIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGA----RVLLLLIAANLYDV 176
N + ++ + +E H++T ++L E IY+ N R ++ + AN +
Sbjct: 85 NSKSMMEEIMKYETLISTHESTIRFLQE------IYNSNSQKIVNLRDKVVQLEANCQEP 138
Query: 177 ALDLLKLHPTIGRDSIDSRRIVLNKLAQKPYAFASGSRLGRLQRLIY 223
D +K+H GRD D V NK A++ + + Q L+Y
Sbjct: 139 CQDTVKIHDVTGRDCQD----VANKGAKESGLYFIRPLKAKQQFLVY 181
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 77 LASKVDPQTLARQ-DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHE 133
LA++++ + + DE G+T L A G + ++ L++ +P L +G L +
Sbjct: 19 LATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSL-- 75
Query: 134 AAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLK--LHPTIGRDS 191
A KG+ + + LL+ V+ Y N G LL + N LL+ PTI DS
Sbjct: 76 ACSKGYTDIVKMLLDCGVDVNEYDWN-GGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 134
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNI-RGGLDTLPIHEAAYKGHKNTFQYLL 147
+D G+T L L A G+L ++VL+K ++ + G+ P+ AA GH + LL
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM--TPLRLAALFGHLEIVEVLL 100
Query: 148 EVTHGVDIYS 157
+ +G D+ +
Sbjct: 101 K--NGADVNA 108
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLT-NIRGGLDTLPIHEAAYKGHKNTFQYLL 147
D+ G TAL+ G+ ++ L PN+ N + L +H AA+KG+ + Q LL
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLF-TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLT 120
+D+ GYT L L A +G+L ++VL+K ++
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLV--KCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
+D + TA+ A KGNL+ + +L+ K + N+ + G P+H A + + +
Sbjct: 135 KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG---NTPLHLACDE--ERVEEAK 189
Query: 147 LEVTHGVDIYSGNDGARVLLLLIAANL 173
L V+ G IY N + L + L
Sbjct: 190 LLVSQGASIYIENKEEKTPLQVAKGGL 216
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
+D G + A G L L+ L++ ++ NI LP+H AA +GH ++L++
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 149 VT 150
T
Sbjct: 125 HT 126
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 89 QDEHGYTALFLCAGKGNLRALKVLV--KCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
+D + TA+ A KGNL+ + +L+ K + N+ + G P+H A + + +
Sbjct: 136 KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG---NTPLHLACDE--ERVEEAK 190
Query: 147 LEVTHGVDIYSGNDGARVLLLLIAANL 173
L V+ G IY N + L + L
Sbjct: 191 LLVSQGASIYIENKEEKTPLQVAKGGL 217
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 44 AKTVAPGS--STIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYT-ALFLC 100
A+ +AP + A+VELL + + E LLD L ++V P DE Y A FL
Sbjct: 14 AEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGV----DEAAYVKAGFLA 69
Query: 101 A-GKGNLRA-LKVLVKCNPNLTNIRGGLDTLPIHEA 134
A KG ++ L K L ++GG + P+ +A
Sbjct: 70 AIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDA 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,765,880
Number of Sequences: 62578
Number of extensions: 263970
Number of successful extensions: 710
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 134
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)