Query 027137
Match_columns 227
No_of_seqs 168 out of 1158
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00434 cytosolic glyceraldeh 100.0 1E-82 2.2E-87 578.4 19.2 226 1-227 1-265 (361)
2 PLN02237 glyceraldehyde-3-phos 100.0 5.3E-76 1.1E-80 545.5 20.4 224 2-227 74-325 (442)
3 COG0057 GapA Glyceraldehyde-3- 100.0 3.3E-74 7.2E-79 515.1 19.4 221 4-227 2-248 (335)
4 PRK07403 glyceraldehyde-3-phos 100.0 4.3E-73 9.3E-78 514.2 20.1 221 4-227 2-250 (337)
5 PTZ00023 glyceraldehyde-3-phos 100.0 1.5E-72 3.3E-77 510.8 20.4 223 3-227 2-251 (337)
6 PRK07729 glyceraldehyde-3-phos 100.0 1.7E-72 3.6E-77 511.0 19.9 222 3-227 2-248 (343)
7 PTZ00353 glycosomal glyceralde 100.0 3E-72 6.4E-77 509.2 20.4 223 3-227 2-251 (342)
8 PRK15425 gapA glyceraldehyde-3 100.0 8.8E-72 1.9E-76 504.8 20.8 221 3-227 2-247 (331)
9 PLN02272 glyceraldehyde-3-phos 100.0 1.9E-70 4.1E-75 507.3 21.3 223 4-227 86-332 (421)
10 PLN02358 glyceraldehyde-3-phos 100.0 2.9E-70 6.3E-75 496.9 21.2 224 3-227 5-253 (338)
11 PLN03096 glyceraldehyde-3-phos 100.0 2.3E-70 4.9E-75 504.2 20.5 224 2-227 59-308 (395)
12 PRK08289 glyceraldehyde-3-phos 100.0 2.2E-69 4.8E-74 502.9 18.9 223 3-227 127-385 (477)
13 TIGR01534 GAPDH-I glyceraldehy 100.0 1.1E-68 2.3E-73 484.8 19.4 221 5-227 1-248 (327)
14 PRK13535 erythrose 4-phosphate 100.0 7.5E-68 1.6E-72 480.5 19.9 221 4-227 2-250 (336)
15 PRK08955 glyceraldehyde-3-phos 100.0 2.2E-67 4.8E-72 477.4 20.6 221 3-227 2-248 (334)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 4.6E-65 1E-69 461.2 20.2 220 5-227 1-248 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 6E-62 1.3E-66 424.3 6.7 207 14-227 1-231 (285)
18 PF00044 Gp_dh_N: Glyceraldehy 100.0 1.2E-51 2.6E-56 337.0 11.9 149 4-154 1-151 (151)
19 TIGR01546 GAPDH-II_archae glyc 100.0 1.9E-47 4E-52 346.7 15.0 200 6-227 1-225 (333)
20 smart00846 Gp_dh_N Glyceraldeh 100.0 1.5E-46 3.2E-51 306.5 16.2 148 4-154 1-149 (149)
21 PRK04207 glyceraldehyde-3-phos 100.0 2.1E-37 4.6E-42 282.5 15.7 201 4-227 2-228 (341)
22 PRK06901 aspartate-semialdehyd 99.9 2.5E-27 5.4E-32 213.4 13.6 155 1-187 1-163 (322)
23 PRK14874 aspartate-semialdehyd 99.9 8.6E-27 1.9E-31 212.0 14.4 166 4-202 2-197 (334)
24 TIGR01296 asd_B aspartate-semi 99.9 2.2E-24 4.7E-29 196.8 14.7 150 5-187 1-160 (339)
25 COG0136 Asd Aspartate-semialde 99.9 1.7E-24 3.6E-29 195.7 13.7 154 4-187 2-166 (334)
26 TIGR01745 asd_gamma aspartate- 99.9 2.4E-24 5.2E-29 197.7 10.4 156 4-187 1-167 (366)
27 PRK08664 aspartate-semialdehyd 99.9 7.2E-22 1.6E-26 180.7 14.2 202 1-226 1-249 (349)
28 PRK06728 aspartate-semialdehyd 99.9 1.7E-21 3.8E-26 178.0 15.4 155 3-187 5-165 (347)
29 PRK08040 putative semialdehyde 99.9 3.3E-21 7.1E-26 175.7 15.8 153 2-187 3-165 (336)
30 PRK06598 aspartate-semialdehyd 99.9 2.3E-21 5.1E-26 178.3 13.0 154 4-187 2-168 (369)
31 PRK05671 aspartate-semialdehyd 99.8 1.3E-19 2.8E-24 165.4 14.9 152 3-187 4-164 (336)
32 TIGR00978 asd_EA aspartate-sem 99.8 3.4E-19 7.3E-24 162.6 14.3 162 4-187 1-179 (341)
33 PLN02383 aspartate semialdehyd 99.8 1E-18 2.2E-23 159.9 14.7 152 3-187 7-172 (344)
34 PF02800 Gp_dh_C: Glyceraldehy 99.8 4.8E-20 1E-24 151.6 3.7 69 159-227 1-92 (157)
35 PRK00436 argC N-acetyl-gamma-g 99.7 8E-17 1.7E-21 147.2 13.9 158 1-187 1-185 (343)
36 PRK08300 acetaldehyde dehydrog 99.7 3E-16 6.5E-21 141.1 11.0 156 1-184 2-160 (302)
37 TIGR01850 argC N-acetyl-gamma- 99.7 8.2E-16 1.8E-20 140.8 12.4 157 4-187 1-185 (346)
38 PRK11863 N-acetyl-gamma-glutam 99.6 1.3E-15 2.9E-20 137.8 12.2 139 2-185 1-147 (313)
39 PLN02968 Probable N-acetyl-gam 99.6 1.9E-15 4.1E-20 140.1 13.4 157 3-187 38-220 (381)
40 KOG4777 Aspartate-semialdehyde 99.6 1.4E-16 3.1E-21 139.4 5.1 165 1-187 1-186 (361)
41 TIGR01851 argC_other N-acetyl- 99.5 6E-14 1.3E-18 126.7 11.3 137 4-185 2-146 (310)
42 TIGR03215 ac_ald_DH_ac acetald 99.5 1.7E-13 3.6E-18 122.7 12.1 153 3-185 1-155 (285)
43 PF01118 Semialdhyde_dh: Semia 99.1 1.2E-10 2.7E-15 91.1 5.0 113 5-143 1-119 (121)
44 COG0002 ArgC Acetylglutamate s 98.5 6.5E-07 1.4E-11 81.9 9.9 141 3-169 2-167 (349)
45 smart00859 Semialdhyde_dh Semi 98.4 9.1E-07 2E-11 68.8 6.6 111 5-142 1-120 (122)
46 TIGR01921 DAP-DH diaminopimela 98.1 6.2E-06 1.3E-10 75.3 7.2 91 1-125 1-91 (324)
47 PRK13303 L-aspartate dehydroge 98.1 1.1E-05 2.3E-10 71.5 8.5 92 4-126 2-93 (265)
48 PRK13301 putative L-aspartate 98.1 8.8E-06 1.9E-10 72.3 7.6 145 2-183 1-149 (267)
49 PRK13302 putative L-aspartate 98.0 3.1E-05 6.7E-10 68.9 8.1 92 1-123 4-96 (271)
50 TIGR00036 dapB dihydrodipicoli 97.9 2.5E-05 5.5E-10 69.2 6.6 95 4-123 2-97 (266)
51 PRK06349 homoserine dehydrogen 97.8 3.6E-05 7.7E-10 72.6 5.5 95 1-126 1-105 (426)
52 PRK06270 homoserine dehydrogen 97.7 0.00012 2.5E-09 67.2 8.1 35 2-36 1-44 (341)
53 COG1712 Predicted dinucleotide 97.7 0.00013 2.8E-09 63.6 7.3 150 4-187 1-151 (255)
54 PRK00048 dihydrodipicolinate r 97.7 0.00011 2.3E-09 64.8 6.7 87 4-123 2-89 (257)
55 PF01408 GFO_IDH_MocA: Oxidore 97.7 0.00018 3.9E-09 54.9 7.0 94 4-127 1-95 (120)
56 PRK11579 putative oxidoreducta 97.6 0.00026 5.6E-09 64.5 9.0 94 1-126 1-96 (346)
57 PF01113 DapB_N: Dihydrodipico 97.6 1.8E-05 4E-10 62.2 1.1 92 4-119 1-93 (124)
58 PRK13304 L-aspartate dehydroge 97.6 0.00023 4.9E-09 63.0 7.8 90 4-125 2-92 (265)
59 COG0673 MviM Predicted dehydro 97.3 0.0012 2.5E-08 59.2 8.5 97 1-126 1-99 (342)
60 COG0289 DapB Dihydrodipicolina 97.3 0.0018 3.9E-08 57.6 9.0 96 3-122 2-98 (266)
61 PRK08374 homoserine dehydrogen 97.2 0.00044 9.5E-09 63.4 5.1 106 3-125 2-121 (336)
62 PRK06813 homoserine dehydrogen 97.1 0.001 2.2E-08 61.4 5.9 34 3-36 2-44 (346)
63 PRK06392 homoserine dehydrogen 97.1 0.0012 2.5E-08 60.5 6.0 33 4-36 1-40 (326)
64 COG0460 ThrA Homoserine dehydr 97.0 0.0023 5E-08 58.7 7.3 36 1-36 1-45 (333)
65 COG4569 MhpF Acetaldehyde dehy 96.9 0.0038 8.3E-08 54.0 7.8 135 3-170 4-146 (310)
66 PRK10206 putative oxidoreducta 96.9 0.0026 5.6E-08 58.2 7.1 93 4-126 2-96 (344)
67 PF03447 NAD_binding_3: Homose 96.7 0.0012 2.6E-08 50.8 2.9 84 10-126 1-90 (117)
68 PRK05447 1-deoxy-D-xylulose 5- 96.5 0.0078 1.7E-07 56.3 7.3 112 4-125 2-122 (385)
69 COG4091 Predicted homoserine d 96.5 0.0033 7.1E-08 58.2 4.6 92 3-104 17-112 (438)
70 PLN02775 Probable dihydrodipic 96.4 0.012 2.5E-07 53.1 7.1 92 3-119 11-106 (286)
71 PLN02700 homoserine dehydrogen 96.4 0.007 1.5E-07 56.5 5.9 36 1-36 1-44 (377)
72 cd01076 NAD_bind_1_Glu_DH NAD( 96.3 0.073 1.6E-06 46.3 11.4 34 2-36 30-63 (227)
73 PRK09414 glutamate dehydrogena 96.1 0.021 4.5E-07 54.5 7.9 100 3-123 232-341 (445)
74 cd05211 NAD_bind_Glu_Leu_Phe_V 96.1 0.086 1.9E-06 45.5 11.0 35 2-37 22-56 (217)
75 PRK05472 redox-sensing transcr 95.7 0.03 6.4E-07 47.8 6.3 95 3-126 84-179 (213)
76 COG2344 AT-rich DNA-binding pr 95.5 0.03 6.4E-07 47.8 5.5 95 3-126 84-179 (211)
77 COG0569 TrkA K+ transport syst 95.3 0.057 1.2E-06 46.7 6.7 99 4-128 1-103 (225)
78 TIGR03736 PRTRC_ThiF PRTRC sys 95.2 0.049 1.1E-06 48.1 6.2 106 3-114 11-127 (244)
79 cd05313 NAD_bind_2_Glu_DH NAD( 95.0 0.16 3.4E-06 45.2 8.8 106 3-125 38-153 (254)
80 PLN02477 glutamate dehydrogena 95.0 0.32 6.9E-06 46.0 11.3 34 3-37 206-239 (410)
81 PLN02819 lysine-ketoglutarate 94.9 0.077 1.7E-06 55.5 7.5 98 3-126 569-679 (1042)
82 PF02629 CoA_binding: CoA bind 94.9 0.045 9.7E-07 40.9 4.4 92 3-126 3-95 (96)
83 COG1748 LYS9 Saccharopine dehy 94.7 0.17 3.6E-06 47.6 8.6 98 4-126 2-99 (389)
84 TIGR01761 thiaz-red thiazoliny 94.6 0.13 2.9E-06 47.4 7.7 93 3-126 3-98 (343)
85 PTZ00079 NADP-specific glutama 94.6 0.24 5.2E-06 47.5 9.4 103 4-123 238-350 (454)
86 TIGR02130 dapB_plant dihydrodi 94.6 0.099 2.2E-06 46.9 6.4 88 4-119 1-95 (275)
87 PRK14030 glutamate dehydrogena 94.4 0.31 6.8E-06 46.6 9.7 105 3-123 228-341 (445)
88 PF02826 2-Hacid_dh_C: D-isome 94.3 0.075 1.6E-06 44.0 4.7 32 4-36 37-68 (178)
89 cd01075 NAD_bind_Leu_Phe_Val_D 94.2 0.28 6E-06 41.6 8.2 32 3-36 28-59 (200)
90 PRK09466 metL bifunctional asp 94.2 0.047 1E-06 55.8 3.9 35 2-36 457-500 (810)
91 PRK09436 thrA bifunctional asp 94.0 0.055 1.2E-06 55.3 4.0 35 2-36 464-506 (819)
92 PRK07819 3-hydroxybutyryl-CoA 93.9 0.48 1E-05 42.3 9.5 149 4-172 6-180 (286)
93 PTZ00082 L-lactate dehydrogena 93.7 0.17 3.7E-06 46.1 6.3 33 3-36 6-38 (321)
94 KOG2741 Dimeric dihydrodiol de 93.6 0.22 4.9E-06 46.0 6.8 97 3-126 6-104 (351)
95 PF03446 NAD_binding_2: NAD bi 93.5 0.12 2.7E-06 42.0 4.7 30 4-34 2-31 (163)
96 PTZ00117 malate dehydrogenase; 93.5 0.36 7.7E-06 43.9 8.0 34 2-36 4-37 (319)
97 PRK08229 2-dehydropantoate 2-r 93.5 0.54 1.2E-05 42.4 9.2 33 1-35 1-33 (341)
98 PF13380 CoA_binding_2: CoA bi 93.4 0.49 1.1E-05 36.7 7.6 83 5-126 2-88 (116)
99 PLN02696 1-deoxy-D-xylulose-5- 93.2 0.95 2.1E-05 43.4 10.6 112 4-125 58-180 (454)
100 PF05368 NmrA: NmrA-like famil 93.2 0.16 3.4E-06 43.1 4.9 95 6-125 1-102 (233)
101 cd01483 E1_enzyme_family Super 93.1 0.13 2.7E-06 40.8 4.0 41 5-46 1-42 (143)
102 PF03435 Saccharop_dh: Sacchar 93.1 0.19 4.1E-06 46.3 5.7 97 6-125 1-97 (386)
103 PF03807 F420_oxidored: NADP o 93.1 0.25 5.3E-06 36.1 5.2 40 5-46 1-42 (96)
104 PRK08507 prephenate dehydrogen 92.9 0.46 9.9E-06 41.9 7.6 29 5-33 2-31 (275)
105 PRK14031 glutamate dehydrogena 92.8 0.57 1.2E-05 44.8 8.5 104 3-124 228-341 (444)
106 CHL00194 ycf39 Ycf39; Provisio 92.6 0.54 1.2E-05 41.9 7.8 30 5-35 2-32 (317)
107 PRK07502 cyclohexadienyl dehyd 92.5 0.48 1E-05 42.4 7.3 33 3-36 6-39 (307)
108 COG1063 Tdh Threonine dehydrog 92.4 0.39 8.5E-06 44.0 6.7 100 5-126 171-271 (350)
109 PRK07634 pyrroline-5-carboxyla 92.4 0.29 6.2E-06 42.0 5.5 36 1-36 1-40 (245)
110 PRK06223 malate dehydrogenase; 92.2 0.73 1.6E-05 41.2 8.1 32 4-36 3-34 (307)
111 COG3804 Uncharacterized conser 92.2 0.48 1E-05 43.0 6.6 35 2-36 1-35 (350)
112 PF10727 Rossmann-like: Rossma 91.6 0.16 3.5E-06 40.4 2.8 33 3-36 10-42 (127)
113 PRK08410 2-hydroxyacid dehydro 91.5 0.25 5.5E-06 44.7 4.4 30 4-34 146-175 (311)
114 PRK06487 glycerate dehydrogena 91.5 0.28 6.1E-06 44.6 4.6 31 4-35 149-179 (317)
115 PRK00066 ldh L-lactate dehydro 91.1 1.5 3.3E-05 39.8 9.0 150 3-180 6-173 (315)
116 PRK11880 pyrroline-5-carboxyla 91.0 0.45 9.7E-06 41.4 5.3 25 1-26 1-25 (267)
117 PLN02256 arogenate dehydrogena 90.8 0.44 9.5E-06 43.2 5.1 34 2-36 35-68 (304)
118 PRK06932 glycerate dehydrogena 90.7 0.34 7.4E-06 44.0 4.4 30 4-34 148-177 (314)
119 PF00056 Ldh_1_N: lactate/mala 90.7 0.63 1.4E-05 37.3 5.5 79 4-105 1-81 (141)
120 COG0111 SerA Phosphoglycerate 90.7 0.36 7.8E-06 44.2 4.5 30 4-34 143-172 (324)
121 PLN02928 oxidoreductase family 90.2 0.4 8.7E-06 44.2 4.4 31 4-35 160-190 (347)
122 PRK07574 formate dehydrogenase 90.1 0.42 9.1E-06 44.8 4.5 30 4-34 193-222 (385)
123 cd08230 glucose_DH Glucose deh 89.9 6.6 0.00014 35.3 12.1 141 4-169 174-316 (355)
124 PRK11559 garR tartronate semia 89.9 0.47 1E-05 42.0 4.5 33 1-36 1-33 (296)
125 PRK08268 3-hydroxy-acyl-CoA de 89.9 0.63 1.4E-05 45.1 5.6 30 4-34 8-37 (507)
126 PRK13243 glyoxylate reductase; 89.7 0.46 1E-05 43.5 4.4 30 4-34 151-180 (333)
127 PRK06436 glycerate dehydrogena 89.7 0.48 1E-05 43.0 4.4 31 4-35 123-153 (303)
128 PLN00016 RNA-binding protein; 89.5 1.2 2.6E-05 40.8 7.0 33 3-36 52-89 (378)
129 COG1052 LdhA Lactate dehydroge 89.4 0.47 1E-05 43.5 4.2 30 4-34 147-176 (324)
130 PRK06249 2-dehydropantoate 2-r 89.4 2.3 5E-05 38.2 8.6 32 2-34 4-35 (313)
131 PRK11790 D-3-phosphoglycerate 89.4 0.51 1.1E-05 44.5 4.5 30 4-34 152-181 (409)
132 cd05293 LDH_1 A subgroup of L- 89.3 0.87 1.9E-05 41.4 5.8 31 3-33 3-34 (312)
133 cd01338 MDH_choloroplast_like 89.3 1.1 2.4E-05 40.9 6.5 147 2-174 1-173 (322)
134 PRK15409 bifunctional glyoxyla 89.2 0.54 1.2E-05 42.9 4.4 31 4-36 146-177 (323)
135 PRK13403 ketol-acid reductoiso 89.1 0.59 1.3E-05 43.1 4.5 32 4-36 17-48 (335)
136 PRK12480 D-lactate dehydrogena 89.0 0.62 1.3E-05 42.6 4.7 30 4-34 147-176 (330)
137 cd00755 YgdL_like Family of ac 89.0 0.61 1.3E-05 40.7 4.4 103 3-108 11-117 (231)
138 KOG1502 Flavonol reductase/cin 88.9 2.6 5.7E-05 38.8 8.6 47 3-51 6-54 (327)
139 PRK15469 ghrA bifunctional gly 88.8 0.65 1.4E-05 42.2 4.6 30 4-34 137-166 (312)
140 PLN02306 hydroxypyruvate reduc 88.6 0.63 1.4E-05 43.6 4.5 32 4-36 166-197 (386)
141 TIGR01202 bchC 2-desacetyl-2-h 88.6 6 0.00013 35.1 10.7 124 5-168 147-271 (308)
142 PRK08644 thiamine biosynthesis 88.6 0.34 7.5E-06 41.5 2.5 24 3-26 28-51 (212)
143 PLN02602 lactate dehydrogenase 88.5 0.91 2E-05 42.0 5.5 150 4-180 38-205 (350)
144 PLN00106 malate dehydrogenase 88.2 4.4 9.5E-05 37.1 9.7 26 3-28 18-44 (323)
145 PRK05442 malate dehydrogenase; 88.2 1.1 2.4E-05 41.0 5.7 152 1-178 1-179 (326)
146 COG0039 Mdh Malate/lactate deh 88.0 0.93 2E-05 41.5 5.1 23 4-26 1-23 (313)
147 TIGR01915 npdG NADPH-dependent 88.0 1.4 3E-05 37.5 6.0 29 4-33 1-30 (219)
148 cd00757 ThiF_MoeB_HesA_family 87.9 0.38 8.3E-06 41.4 2.5 33 3-36 21-53 (228)
149 KOG4354 N-acetyl-gamma-glutamy 87.8 2.9 6.3E-05 37.4 7.8 155 3-187 19-186 (340)
150 PRK15438 erythronate-4-phospha 87.8 0.75 1.6E-05 43.1 4.4 31 4-36 117-147 (378)
151 PRK08605 D-lactate dehydrogena 87.7 0.82 1.8E-05 41.8 4.6 30 4-33 147-176 (332)
152 PLN03139 formate dehydrogenase 87.7 0.71 1.5E-05 43.4 4.2 31 4-36 200-230 (386)
153 TIGR03649 ergot_EASG ergot alk 87.6 1.4 3.1E-05 38.2 6.0 30 5-35 1-31 (285)
154 cd05290 LDH_3 A subgroup of L- 87.6 1.2 2.5E-05 40.5 5.4 32 5-36 1-32 (307)
155 PRK11064 wecC UDP-N-acetyl-D-m 87.2 0.93 2E-05 42.7 4.8 33 1-34 1-33 (415)
156 COG0771 MurD UDP-N-acetylmuram 87.2 3.9 8.4E-05 39.3 8.9 89 3-119 7-95 (448)
157 cd01487 E1_ThiF_like E1_ThiF_l 87.1 0.84 1.8E-05 37.8 3.9 30 5-35 1-30 (174)
158 KOG0455 Homoserine dehydrogena 86.9 0.74 1.6E-05 41.3 3.6 36 1-36 1-44 (364)
159 PLN02712 arogenate dehydrogena 86.8 0.99 2.1E-05 45.3 4.9 32 3-35 369-400 (667)
160 PRK15116 sulfur acceptor prote 86.7 0.8 1.7E-05 40.9 3.8 24 3-26 30-53 (268)
161 PRK07417 arogenate dehydrogena 86.5 1 2.2E-05 39.8 4.4 29 5-34 2-30 (279)
162 PRK07679 pyrroline-5-carboxyla 86.3 1.2 2.6E-05 39.3 4.7 26 1-26 1-26 (279)
163 cd05291 HicDH_like L-2-hydroxy 85.9 1.6 3.5E-05 39.2 5.4 30 5-34 2-32 (306)
164 PLN02712 arogenate dehydrogena 85.8 1.2 2.5E-05 44.8 4.8 32 3-35 52-83 (667)
165 COG2910 Putative NADH-flavin r 85.7 1.2 2.5E-05 38.3 4.1 31 4-35 1-32 (211)
166 PLN02688 pyrroline-5-carboxyla 85.4 1.8 3.9E-05 37.6 5.4 33 4-36 1-36 (266)
167 cd00401 AdoHcyase S-adenosyl-L 85.4 1.9 4.2E-05 40.9 5.9 31 4-36 203-233 (413)
168 PRK06476 pyrroline-5-carboxyla 85.3 1.6 3.6E-05 37.9 5.1 32 5-36 2-34 (258)
169 PRK00257 erythronate-4-phospha 85.2 1.3 2.9E-05 41.5 4.6 31 4-36 117-147 (381)
170 PF03721 UDPG_MGDP_dh_N: UDP-g 84.7 1.4 3E-05 37.0 4.1 30 4-34 1-30 (185)
171 TIGR01327 PGDH D-3-phosphoglyc 84.6 1.3 2.8E-05 43.1 4.5 30 4-34 139-168 (525)
172 TIGR02356 adenyl_thiF thiazole 84.5 1.3 2.7E-05 37.6 3.8 41 3-44 21-62 (202)
173 PRK09880 L-idonate 5-dehydroge 84.3 7 0.00015 35.0 8.8 93 4-123 171-264 (343)
174 TIGR02354 thiF_fam2 thiamine b 84.3 0.6 1.3E-05 39.7 1.8 33 3-36 21-53 (200)
175 PRK09599 6-phosphogluconate de 84.3 1.6 3.4E-05 39.1 4.5 29 5-34 2-30 (301)
176 PRK05690 molybdopterin biosynt 84.2 0.83 1.8E-05 40.0 2.7 116 3-126 32-154 (245)
177 PLN02662 cinnamyl-alcohol dehy 84.2 5.9 0.00013 34.8 8.2 30 4-34 5-35 (322)
178 PRK13581 D-3-phosphoglycerate 83.8 1.5 3.2E-05 42.7 4.4 30 4-34 141-170 (526)
179 TIGR02355 moeB molybdopterin s 83.6 0.91 2E-05 39.7 2.7 112 3-119 24-141 (240)
180 cd05294 LDH-like_MDH_nadp A la 83.5 2.9 6.3E-05 37.8 6.0 31 4-34 1-33 (309)
181 PRK12490 6-phosphogluconate de 83.1 1.9 4.1E-05 38.5 4.6 30 5-36 2-31 (299)
182 PRK12491 pyrroline-5-carboxyla 83.1 2.3 5E-05 37.7 5.1 24 3-26 2-25 (272)
183 PF02670 DXP_reductoisom: 1-de 83.1 2.8 6.2E-05 33.4 5.1 109 6-124 1-120 (129)
184 PRK00094 gpsA NAD(P)H-dependen 82.7 2.2 4.9E-05 37.8 4.9 30 4-34 2-31 (325)
185 TIGR00872 gnd_rel 6-phosphoglu 82.5 2 4.3E-05 38.4 4.5 29 5-34 2-30 (298)
186 TIGR03366 HpnZ_proposed putati 82.4 7.9 0.00017 33.7 8.2 136 5-168 123-260 (280)
187 PF02774 Semialdhyde_dhC: Semi 82.3 0.97 2.1E-05 37.7 2.2 25 163-187 1-26 (184)
188 PRK12475 thiamine/molybdopteri 82.3 1.5 3.2E-05 40.4 3.6 33 3-36 24-56 (338)
189 KOG0069 Glyoxylate/hydroxypyru 82.1 1.1 2.4E-05 41.4 2.7 22 4-25 163-184 (336)
190 cd01486 Apg7 Apg7 is an E1-lik 81.8 0.74 1.6E-05 42.0 1.5 30 5-35 1-30 (307)
191 COG0287 TyrA Prephenate dehydr 81.5 2.2 4.9E-05 38.2 4.4 25 2-26 2-26 (279)
192 COG0334 GdhA Glutamate dehydro 81.4 12 0.00025 35.6 9.3 33 4-37 208-240 (411)
193 PTZ00431 pyrroline carboxylate 81.4 2.6 5.6E-05 36.9 4.7 26 1-26 1-26 (260)
194 PLN02545 3-hydroxybutyryl-CoA 81.4 2.7 5.9E-05 37.2 4.9 33 1-34 1-34 (295)
195 TIGR01019 sucCoAalpha succinyl 81.1 7.5 0.00016 35.0 7.7 86 3-123 6-93 (286)
196 PRK11154 fadJ multifunctional 80.8 2.1 4.5E-05 43.2 4.4 152 4-175 310-486 (708)
197 PRK07530 3-hydroxybutyryl-CoA 80.8 3 6.4E-05 37.0 4.9 32 1-33 1-33 (292)
198 PRK05479 ketol-acid reductoiso 80.6 2.7 5.8E-05 38.8 4.6 31 4-35 18-48 (330)
199 PRK08818 prephenate dehydrogen 80.4 2.8 6.2E-05 39.1 4.8 31 3-33 4-35 (370)
200 PRK05808 3-hydroxybutyryl-CoA 80.4 2.9 6.4E-05 36.8 4.7 33 1-34 1-33 (282)
201 PRK06718 precorrin-2 dehydroge 80.2 24 0.00053 29.8 10.2 30 4-34 11-40 (202)
202 TIGR01505 tartro_sem_red 2-hyd 80.0 2.2 4.7E-05 37.7 3.8 29 5-34 1-29 (291)
203 TIGR02717 AcCoA-syn-alpha acet 79.9 8.8 0.00019 36.5 8.1 82 3-123 7-94 (447)
204 PF00208 ELFV_dehydrog: Glutam 79.9 3 6.5E-05 36.6 4.6 137 3-162 32-178 (244)
205 PRK03369 murD UDP-N-acetylmura 79.7 12 0.00026 35.9 9.0 83 4-118 13-95 (488)
206 cd01484 E1-2_like Ubiquitin ac 79.5 2.5 5.5E-05 36.9 4.0 113 5-126 1-123 (234)
207 PRK14618 NAD(P)H-dependent gly 79.5 3.3 7.2E-05 37.3 4.9 32 3-35 4-35 (328)
208 PF02254 TrkA_N: TrkA-N domain 79.3 4 8.7E-05 30.5 4.6 29 6-35 1-29 (116)
209 TIGR02853 spore_dpaA dipicolin 79.3 3 6.5E-05 37.4 4.5 31 4-35 152-182 (287)
210 COG1062 AdhC Zn-dependent alco 79.2 6.4 0.00014 36.7 6.6 97 4-123 187-284 (366)
211 TIGR00465 ilvC ketol-acid redu 79.0 3.5 7.5E-05 37.6 4.8 33 3-36 3-35 (314)
212 PRK06928 pyrroline-5-carboxyla 78.8 3.6 7.7E-05 36.4 4.8 32 4-35 2-36 (277)
213 PRK15059 tartronate semialdehy 78.6 3.2 6.9E-05 37.1 4.5 28 5-33 2-29 (292)
214 PF13460 NAD_binding_10: NADH( 78.6 3.8 8.3E-05 32.9 4.6 30 6-36 1-31 (183)
215 TIGR02440 FadJ fatty oxidation 78.5 2.8 6.2E-05 42.2 4.5 32 4-36 305-336 (699)
216 PRK01438 murD UDP-N-acetylmura 78.3 18 0.0004 34.2 9.8 30 4-34 17-46 (480)
217 PRK06035 3-hydroxyacyl-CoA deh 78.3 3.9 8.5E-05 36.2 4.9 33 1-34 1-33 (291)
218 PRK06046 alanine dehydrogenase 78.3 3.6 7.8E-05 37.4 4.7 33 4-36 130-162 (326)
219 PRK14619 NAD(P)H-dependent gly 78.1 3.5 7.6E-05 36.9 4.6 31 3-34 4-34 (308)
220 COG2085 Predicted dinucleotide 78.0 4.6 0.0001 35.0 5.0 91 4-126 2-93 (211)
221 TIGR03026 NDP-sugDHase nucleot 77.8 3.2 6.9E-05 38.8 4.4 29 5-34 2-30 (411)
222 TIGR01759 MalateDH-SF1 malate 77.6 6.4 0.00014 36.0 6.2 148 3-177 3-177 (323)
223 PRK11908 NAD-dependent epimera 77.4 4.1 8.9E-05 36.5 4.9 32 4-35 2-34 (347)
224 TIGR01763 MalateDH_bact malate 77.2 6.9 0.00015 35.3 6.2 146 4-176 2-165 (305)
225 cd08239 THR_DH_like L-threonin 77.1 6.9 0.00015 34.7 6.2 138 4-169 165-303 (339)
226 cd08237 ribitol-5-phosphate_DH 77.0 21 0.00045 32.1 9.3 31 4-34 165-196 (341)
227 PRK05597 molybdopterin biosynt 76.7 2 4.4E-05 39.6 2.7 32 3-35 28-59 (355)
228 PRK15461 NADH-dependent gamma- 76.7 3.9 8.4E-05 36.5 4.4 30 4-34 2-31 (296)
229 PRK07680 late competence prote 76.6 5.4 0.00012 35.0 5.3 32 5-36 2-35 (273)
230 cd08298 CAD2 Cinnamyl alcohol 76.6 44 0.00094 29.2 11.1 127 5-168 170-296 (329)
231 COG0345 ProC Pyrroline-5-carbo 76.5 5.4 0.00012 35.7 5.2 39 4-44 2-42 (266)
232 PRK05600 thiamine biosynthesis 76.2 2 4.4E-05 40.0 2.5 112 3-119 41-158 (370)
233 TIGR00243 Dxr 1-deoxy-D-xylulo 75.9 5.6 0.00012 37.5 5.3 112 4-125 2-124 (389)
234 PRK06130 3-hydroxybutyryl-CoA 75.9 5 0.00011 35.7 4.9 30 4-34 5-34 (311)
235 PF02737 3HCDH_N: 3-hydroxyacy 75.9 4.8 0.00011 33.4 4.5 30 5-36 1-30 (180)
236 PRK14573 bifunctional D-alanyl 75.8 14 0.00031 37.7 8.7 34 1-36 1-36 (809)
237 PRK06719 precorrin-2 dehydroge 75.7 39 0.00085 27.4 9.8 30 4-34 14-43 (157)
238 PRK07531 bifunctional 3-hydrox 75.4 4.8 0.0001 38.8 4.9 32 3-36 4-35 (495)
239 PRK07877 hypothetical protein; 75.0 1.7 3.7E-05 44.1 1.8 118 3-126 107-228 (722)
240 cd00704 MDH Malate dehydrogena 74.9 7.5 0.00016 35.5 5.9 23 4-26 1-24 (323)
241 PTZ00075 Adenosylhomocysteinas 74.6 4.8 0.0001 38.9 4.7 29 4-33 255-283 (476)
242 PRK14851 hypothetical protein; 74.2 2.7 5.9E-05 42.3 3.0 98 3-104 43-144 (679)
243 cd01065 NAD_bind_Shikimate_DH 74.1 8.8 0.00019 30.1 5.4 33 3-36 19-51 (155)
244 PLN02427 UDP-apiose/xylose syn 73.9 5.6 0.00012 36.3 4.8 33 3-35 14-47 (386)
245 TIGR01757 Malate-DH_plant mala 73.5 6.4 0.00014 37.1 5.1 24 3-26 44-68 (387)
246 PRK08219 short chain dehydroge 73.3 5.9 0.00013 32.6 4.4 33 1-35 1-34 (227)
247 PRK00683 murD UDP-N-acetylmura 73.1 5.7 0.00012 37.1 4.8 33 1-34 1-33 (418)
248 PF01210 NAD_Gly3P_dh_N: NAD-d 72.9 10 0.00022 30.5 5.7 100 5-126 1-103 (157)
249 PRK06129 3-hydroxyacyl-CoA deh 72.8 5.7 0.00012 35.6 4.5 30 4-34 3-32 (308)
250 PRK08293 3-hydroxybutyryl-CoA 72.7 6.9 0.00015 34.6 4.9 32 1-33 1-32 (287)
251 cd08242 MDR_like Medium chain 72.6 37 0.0008 29.6 9.6 87 4-123 157-243 (319)
252 PRK05678 succinyl-CoA syntheta 72.5 18 0.0004 32.6 7.7 87 3-123 8-95 (291)
253 PRK14106 murD UDP-N-acetylmura 72.3 27 0.00058 32.6 9.1 32 3-36 5-36 (450)
254 PRK06444 prephenate dehydrogen 72.2 6.9 0.00015 33.3 4.6 22 4-25 1-23 (197)
255 cd05213 NAD_bind_Glutamyl_tRNA 72.0 6.1 0.00013 35.6 4.5 33 3-36 178-210 (311)
256 KOG0068 D-3-phosphoglycerate d 71.7 5.2 0.00011 37.4 3.9 29 4-33 147-175 (406)
257 PLN02586 probable cinnamyl alc 71.5 20 0.00044 32.5 7.9 30 5-35 186-215 (360)
258 PRK09496 trkA potassium transp 71.5 6.1 0.00013 36.8 4.6 29 5-34 2-30 (453)
259 PRK11199 tyrA bifunctional cho 71.3 5.8 0.00012 36.8 4.3 30 4-34 99-129 (374)
260 PRK08306 dipicolinate synthase 71.3 6.8 0.00015 35.2 4.6 31 4-35 153-183 (296)
261 PRK03806 murD UDP-N-acetylmura 71.2 34 0.00073 32.0 9.5 104 4-140 7-116 (438)
262 PRK06522 2-dehydropantoate 2-r 71.0 7.1 0.00015 34.2 4.6 30 4-34 1-30 (304)
263 KOG0022 Alcohol dehydrogenase, 70.9 11 0.00024 35.0 5.8 96 5-123 195-293 (375)
264 PRK15057 UDP-glucose 6-dehydro 70.6 5.8 0.00013 37.1 4.2 38 5-47 2-39 (388)
265 KOG3923 D-aspartate oxidase [A 70.4 5.8 0.00013 36.4 3.9 36 1-36 1-42 (342)
266 COG1179 Dinucleotide-utilizing 70.3 4.2 9.2E-05 36.2 3.0 124 4-134 31-164 (263)
267 PTZ00142 6-phosphogluconate de 70.3 5.9 0.00013 38.1 4.2 30 4-34 2-31 (470)
268 PRK06153 hypothetical protein; 70.1 3.1 6.7E-05 39.2 2.2 31 4-34 177-207 (393)
269 COG1023 Gnd Predicted 6-phosph 70.1 5 0.00011 35.9 3.3 43 4-50 1-43 (300)
270 cd01339 LDH-like_MDH L-lactate 70.0 9.4 0.0002 34.1 5.2 30 6-36 1-30 (300)
271 PRK11730 fadB multifunctional 70.0 6.2 0.00013 39.9 4.5 29 4-33 314-342 (715)
272 PRK09260 3-hydroxybutyryl-CoA 69.8 7.2 0.00016 34.4 4.4 38 4-45 2-39 (288)
273 cd08281 liver_ADH_like1 Zinc-d 69.5 15 0.00033 33.3 6.6 91 5-119 194-285 (371)
274 PF07991 IlvN: Acetohydroxy ac 69.5 7.1 0.00015 32.6 4.0 31 4-35 5-35 (165)
275 COG0373 HemA Glutamyl-tRNA red 69.4 7.4 0.00016 37.0 4.6 32 4-35 179-210 (414)
276 PRK08328 hypothetical protein; 69.2 4.8 0.0001 34.8 3.1 33 3-36 27-59 (231)
277 PRK07878 molybdopterin biosynt 69.1 1.6 3.5E-05 40.8 0.1 33 3-36 42-74 (392)
278 PRK06988 putative formyltransf 69.1 7.8 0.00017 35.2 4.5 32 1-34 1-32 (312)
279 PRK03659 glutathione-regulated 69.0 8.1 0.00018 38.2 5.0 39 4-46 401-439 (601)
280 PLN02494 adenosylhomocysteinas 68.9 7.6 0.00017 37.6 4.6 30 4-34 255-284 (477)
281 TIGR02437 FadB fatty oxidation 68.9 6.4 0.00014 39.8 4.3 31 4-36 314-344 (714)
282 COG0743 Dxr 1-deoxy-D-xylulose 68.8 7.2 0.00016 36.6 4.2 42 4-46 2-45 (385)
283 TIGR00936 ahcY adenosylhomocys 68.4 7.7 0.00017 36.8 4.5 30 4-34 196-225 (406)
284 TIGR01381 E1_like_apg7 E1-like 68.3 3 6.5E-05 41.8 1.8 24 3-26 338-361 (664)
285 PF00899 ThiF: ThiF family; I 68.3 12 0.00027 29.0 5.0 106 3-113 2-112 (135)
286 PRK04690 murD UDP-N-acetylmura 68.2 38 0.00082 32.3 9.2 31 4-36 9-39 (468)
287 cd05292 LDH_2 A subgroup of L- 68.2 8.6 0.00019 34.7 4.6 33 4-36 1-33 (308)
288 TIGR01470 cysG_Nterm siroheme 68.2 52 0.0011 27.9 9.2 30 4-34 10-39 (205)
289 TIGR02441 fa_ox_alpha_mit fatt 68.0 4.2 9E-05 41.3 2.8 37 4-44 336-372 (737)
290 PLN00112 malate dehydrogenase 67.8 14 0.0003 35.5 6.1 23 3-25 100-123 (444)
291 COG1064 AdhP Zn-dependent alco 67.4 38 0.00082 31.4 8.7 131 4-168 168-301 (339)
292 PRK09424 pntA NAD(P) transhydr 67.2 44 0.00096 32.7 9.5 31 4-36 166-196 (509)
293 TIGR01087 murD UDP-N-acetylmur 67.0 33 0.00072 31.9 8.5 30 5-36 1-30 (433)
294 TIGR03201 dearomat_had 6-hydro 66.6 71 0.0015 28.5 10.3 136 4-168 168-312 (349)
295 PRK08618 ornithine cyclodeamin 66.6 12 0.00025 34.0 5.2 90 4-123 128-218 (325)
296 PRK03562 glutathione-regulated 66.6 9.4 0.0002 38.0 4.9 39 4-46 401-439 (621)
297 PRK02006 murD UDP-N-acetylmura 66.3 45 0.00099 31.8 9.4 31 4-36 8-38 (498)
298 PRK06545 prephenate dehydrogen 66.0 8.5 0.00018 35.4 4.2 22 5-26 2-23 (359)
299 PRK00141 murD UDP-N-acetylmura 65.9 41 0.00089 32.1 9.0 31 4-36 16-46 (473)
300 PLN02350 phosphogluconate dehy 65.6 6.6 0.00014 38.1 3.5 129 3-144 6-157 (493)
301 cd05191 NAD_bind_amino_acid_DH 65.3 15 0.00032 26.4 4.6 22 4-25 24-45 (86)
302 PRK07411 hypothetical protein; 65.2 2.5 5.4E-05 39.6 0.5 33 3-36 38-70 (390)
303 PLN02986 cinnamyl-alcohol dehy 65.1 24 0.00052 31.1 6.8 32 4-36 6-38 (322)
304 PRK01710 murD UDP-N-acetylmura 64.9 39 0.00083 32.0 8.5 31 4-36 15-45 (458)
305 PRK02318 mannitol-1-phosphate 64.6 8.7 0.00019 35.7 4.0 31 4-34 1-31 (381)
306 PLN02178 cinnamyl-alcohol dehy 64.5 50 0.0011 30.3 9.0 134 4-169 180-314 (375)
307 PRK15181 Vi polysaccharide bio 64.3 12 0.00026 33.8 4.8 32 3-35 15-47 (348)
308 COG1087 GalE UDP-glucose 4-epi 64.1 18 0.0004 33.3 5.8 33 4-37 1-34 (329)
309 KOG0024 Sorbitol dehydrogenase 63.8 11 0.00023 35.1 4.3 30 93-123 242-271 (354)
310 PLN02353 probable UDP-glucose 63.6 11 0.00025 36.2 4.7 31 4-34 2-33 (473)
311 PRK10083 putative oxidoreducta 63.3 33 0.00071 30.2 7.4 96 5-123 163-258 (339)
312 PRK15182 Vi polysaccharide bio 63.2 9.9 0.00021 36.0 4.2 30 3-34 6-35 (425)
313 PTZ00325 malate dehydrogenase; 63.2 13 0.00029 33.9 4.9 141 3-174 8-173 (321)
314 TIGR02371 ala_DH_arch alanine 63.2 14 0.00031 33.5 5.1 33 4-36 129-161 (325)
315 KOG2380 Prephenate dehydrogena 63.2 9.2 0.0002 35.9 3.8 24 3-26 52-75 (480)
316 PRK12921 2-dehydropantoate 2-r 63.1 12 0.00026 32.9 4.4 30 4-34 1-30 (305)
317 TIGR00873 gnd 6-phosphoglucona 62.7 8.7 0.00019 37.0 3.7 30 5-35 1-30 (467)
318 PLN02240 UDP-glucose 4-epimera 62.7 13 0.00029 33.0 4.8 32 3-35 5-37 (352)
319 PRK08655 prephenate dehydrogen 62.7 12 0.00026 35.5 4.7 30 4-34 1-31 (437)
320 PLN02740 Alcohol dehydrogenase 62.6 20 0.00044 32.7 6.1 30 4-34 200-230 (381)
321 TIGR01035 hemA glutamyl-tRNA r 62.5 12 0.00026 35.2 4.6 32 4-35 181-212 (417)
322 PRK00421 murC UDP-N-acetylmura 62.2 45 0.00097 31.5 8.4 31 4-36 8-39 (461)
323 cd01485 E1-1_like Ubiquitin ac 62.1 7.2 0.00016 32.9 2.7 32 3-35 19-50 (198)
324 cd01336 MDH_cytoplasmic_cytoso 61.7 15 0.00032 33.6 4.9 31 3-33 2-39 (325)
325 PRK10669 putative cation:proto 61.6 13 0.00029 36.1 4.8 31 4-35 418-448 (558)
326 PRK04663 murD UDP-N-acetylmura 61.2 58 0.0012 30.6 8.9 85 4-119 8-94 (438)
327 TIGR03451 mycoS_dep_FDH mycoth 61.1 73 0.0016 28.6 9.3 30 4-34 178-208 (358)
328 PRK05476 S-adenosyl-L-homocyst 61.1 13 0.00028 35.5 4.5 29 4-33 213-241 (425)
329 PRK07066 3-hydroxybutyryl-CoA 60.8 16 0.00035 33.4 4.9 31 4-36 8-38 (321)
330 PRK03803 murD UDP-N-acetylmura 60.6 51 0.0011 30.9 8.4 30 5-36 8-37 (448)
331 cd00650 LDH_MDH_like NAD-depen 59.9 18 0.00038 31.6 4.9 21 6-26 1-22 (263)
332 TIGR00561 pntA NAD(P) transhyd 59.9 37 0.0008 33.2 7.5 31 4-36 165-195 (511)
333 PRK05708 2-dehydropantoate 2-r 59.7 15 0.00032 33.0 4.5 31 3-34 2-32 (305)
334 PF04321 RmlD_sub_bind: RmlD s 59.5 15 0.00033 32.4 4.5 31 4-35 1-32 (286)
335 cd05283 CAD1 Cinnamyl alcohol 59.3 82 0.0018 27.8 9.2 87 4-118 171-257 (337)
336 PRK08223 hypothetical protein; 59.2 7.6 0.00017 35.1 2.5 98 3-104 27-128 (287)
337 PRK07236 hypothetical protein; 59.0 16 0.00034 33.4 4.6 32 1-33 4-35 (386)
338 cd01337 MDH_glyoxysomal_mitoch 58.2 18 0.00038 33.0 4.7 23 4-26 1-24 (310)
339 PRK14852 hypothetical protein; 58.0 11 0.00024 39.6 3.7 32 3-35 332-363 (989)
340 cd01490 Ube1_repeat2 Ubiquitin 57.7 15 0.00032 35.2 4.3 22 5-26 1-22 (435)
341 COG1250 FadB 3-hydroxyacyl-CoA 57.2 15 0.00033 33.5 4.1 34 1-36 1-34 (307)
342 cd08255 2-desacetyl-2-hydroxye 57.2 82 0.0018 26.7 8.6 86 4-119 99-185 (277)
343 cd08296 CAD_like Cinnamyl alco 57.1 53 0.0012 29.0 7.6 94 5-124 166-259 (333)
344 cd08301 alcohol_DH_plants Plan 56.7 29 0.00062 31.3 5.9 30 4-34 189-219 (369)
345 PLN02514 cinnamyl-alcohol dehy 56.6 42 0.00092 30.3 7.0 138 4-174 182-320 (357)
346 cd00300 LDH_like L-lactate deh 56.6 19 0.00041 32.3 4.6 31 6-36 1-31 (300)
347 PRK05653 fabG 3-ketoacyl-(acyl 56.4 23 0.00049 29.2 4.8 32 3-35 5-37 (246)
348 PLN00198 anthocyanidin reducta 56.1 20 0.00044 31.9 4.7 32 2-34 8-40 (338)
349 PRK15076 alpha-galactosidase; 56.0 14 0.0003 35.2 3.8 13 4-16 2-14 (431)
350 cd08277 liver_alcohol_DH_like 55.6 74 0.0016 28.7 8.4 30 4-34 186-216 (365)
351 PF01488 Shikimate_DH: Shikima 55.5 27 0.00059 27.3 4.9 31 4-35 13-44 (135)
352 PRK10309 galactitol-1-phosphat 55.5 43 0.00093 29.8 6.8 29 4-33 162-191 (347)
353 PLN02695 GDP-D-mannose-3',5'-e 55.1 22 0.00047 32.6 4.9 31 3-34 21-52 (370)
354 KOG1399 Flavin-containing mono 54.6 14 0.00031 35.4 3.7 24 2-25 5-28 (448)
355 COG0702 Predicted nucleoside-d 54.4 20 0.00043 30.3 4.2 31 4-35 1-32 (275)
356 PRK07326 short chain dehydroge 53.9 25 0.00054 29.1 4.7 30 4-34 7-37 (237)
357 PRK07340 ornithine cyclodeamin 53.9 25 0.00055 31.6 5.0 33 4-36 126-158 (304)
358 cd01489 Uba2_SUMO Ubiquitin ac 53.8 14 0.0003 33.7 3.3 31 5-36 1-31 (312)
359 PLN00141 Tic62-NAD(P)-related 53.6 24 0.00053 30.0 4.7 31 4-35 18-49 (251)
360 PF01262 AlaDh_PNT_C: Alanine 53.1 29 0.00064 28.1 4.9 32 3-35 20-51 (168)
361 PF02558 ApbA: Ketopantoate re 53.0 25 0.00055 27.4 4.4 30 6-36 1-30 (151)
362 PLN02166 dTDP-glucose 4,6-dehy 52.7 24 0.00051 33.5 4.8 32 3-35 120-152 (436)
363 PLN02778 3,5-epimerase/4-reduc 52.7 33 0.00071 30.4 5.5 29 3-32 9-38 (298)
364 TIGR02279 PaaC-3OHAcCoADH 3-hy 52.6 21 0.00046 34.6 4.5 30 4-34 6-35 (503)
365 TIGR00518 alaDH alanine dehydr 52.4 23 0.0005 32.9 4.6 30 4-34 168-197 (370)
366 PRK09496 trkA potassium transp 52.4 23 0.00049 33.0 4.6 30 4-34 232-261 (453)
367 COG0677 WecC UDP-N-acetyl-D-ma 51.8 17 0.00036 34.7 3.5 30 3-33 9-38 (436)
368 cd08278 benzyl_alcohol_DH Benz 51.7 39 0.00084 30.5 5.9 95 4-123 188-283 (365)
369 cd08234 threonine_DH_like L-th 51.4 63 0.0014 28.2 7.1 90 5-119 162-252 (334)
370 PLN02657 3,8-divinyl protochlo 51.4 27 0.00059 32.3 4.9 32 3-35 60-92 (390)
371 TIGR01771 L-LDH-NAD L-lactate 51.0 23 0.00049 32.0 4.2 29 8-36 1-29 (299)
372 PRK00045 hemA glutamyl-tRNA re 50.9 25 0.00053 33.2 4.6 30 4-34 183-213 (423)
373 PRK02472 murD UDP-N-acetylmura 50.6 93 0.002 29.0 8.4 31 4-36 6-36 (447)
374 PRK14806 bifunctional cyclohex 50.5 25 0.00053 35.4 4.8 31 4-34 4-35 (735)
375 COG2084 MmsB 3-hydroxyisobutyr 50.3 24 0.00053 31.9 4.3 128 4-144 1-146 (286)
376 PLN02827 Alcohol dehydrogenase 50.3 48 0.001 30.3 6.3 29 4-33 195-224 (378)
377 cd08254 hydroxyacyl_CoA_DH 6-h 50.2 51 0.0011 28.7 6.3 91 5-119 168-258 (338)
378 PRK10675 UDP-galactose-4-epime 50.1 27 0.0006 30.8 4.6 31 4-35 1-32 (338)
379 TIGR02818 adh_III_F_hyde S-(hy 50.0 47 0.001 30.1 6.2 30 4-34 187-217 (368)
380 PRK06019 phosphoribosylaminoim 49.8 29 0.00063 31.9 4.8 30 4-34 3-32 (372)
381 PRK09126 hypothetical protein; 49.5 26 0.00056 31.8 4.4 33 1-34 1-33 (392)
382 TIGR02819 fdhA_non_GSH formald 49.5 1.3E+02 0.0028 27.8 9.2 31 5-36 188-218 (393)
383 cd05188 MDR Medium chain reduc 49.2 74 0.0016 26.3 6.9 31 4-35 136-166 (271)
384 cd08235 iditol_2_DH_like L-idi 49.1 55 0.0012 28.8 6.4 93 4-119 167-260 (343)
385 PF00107 ADH_zinc_N: Zinc-bind 48.5 7.7 0.00017 29.3 0.7 36 92-127 57-92 (130)
386 TIGR01408 Ube1 ubiquitin-activ 48.4 30 0.00065 36.6 5.1 23 3-25 419-441 (1008)
387 cd08233 butanediol_DH_like (2R 48.4 50 0.0011 29.4 6.0 29 5-34 175-204 (351)
388 cd08269 Zn_ADH9 Alcohol dehydr 48.3 59 0.0013 27.9 6.3 31 4-35 131-162 (312)
389 cd08245 CAD Cinnamyl alcohol d 48.3 93 0.002 27.1 7.7 31 4-35 164-194 (330)
390 TIGR00507 aroE shikimate 5-deh 48.3 97 0.0021 27.1 7.7 31 4-35 118-148 (270)
391 PLN02206 UDP-glucuronate decar 47.5 28 0.0006 33.1 4.4 31 4-35 120-151 (442)
392 PRK12825 fabG 3-ketoacyl-(acyl 47.5 39 0.00085 27.8 4.9 31 3-34 6-37 (249)
393 PRK08291 ectoine utilization p 47.2 40 0.00087 30.6 5.3 33 4-36 133-165 (330)
394 COG0362 Gnd 6-phosphogluconate 47.1 23 0.0005 33.8 3.7 35 1-36 1-35 (473)
395 PRK05225 ketol-acid reductoiso 47.0 12 0.00026 36.3 1.8 27 4-31 37-63 (487)
396 PRK08125 bifunctional UDP-gluc 46.9 31 0.00068 34.3 4.8 32 4-35 316-348 (660)
397 PF00070 Pyr_redox: Pyridine n 46.6 49 0.0011 23.1 4.6 28 5-33 1-28 (80)
398 PRK05732 2-octaprenyl-6-methox 46.4 30 0.00066 31.2 4.4 35 1-35 1-37 (395)
399 PRK14620 NAD(P)H-dependent gly 46.3 35 0.00075 30.6 4.7 26 5-31 2-27 (326)
400 PRK10217 dTDP-glucose 4,6-dehy 46.0 33 0.00071 30.6 4.5 31 4-35 2-33 (355)
401 COG5322 Predicted dehydrogenas 45.9 90 0.002 28.6 7.0 61 93-156 230-291 (351)
402 cd05284 arabinose_DH_like D-ar 45.6 82 0.0018 27.6 6.9 31 5-35 170-200 (340)
403 PLN00203 glutamyl-tRNA reducta 45.4 28 0.00061 34.0 4.2 32 4-35 267-298 (519)
404 PRK12826 3-ketoacyl-(acyl-carr 45.4 39 0.00084 28.0 4.6 32 3-35 6-38 (251)
405 PRK08163 salicylate hydroxylas 45.3 35 0.00076 30.9 4.6 31 2-33 3-33 (396)
406 PRK07688 thiamine/molybdopteri 45.2 44 0.00094 30.7 5.2 40 3-43 24-64 (339)
407 PLN02858 fructose-bisphosphate 44.9 29 0.00064 37.9 4.5 30 4-34 325-354 (1378)
408 TIGR03466 HpnA hopanoid-associ 44.7 34 0.00073 29.7 4.3 30 5-35 2-32 (328)
409 PF00670 AdoHcyase_NAD: S-aden 44.7 29 0.00063 28.8 3.5 31 4-36 24-54 (162)
410 cd08300 alcohol_DH_class_III c 44.6 1.7E+02 0.0038 26.3 9.0 30 4-34 188-218 (368)
411 cd05279 Zn_ADH1 Liver alcohol 44.5 61 0.0013 29.2 6.0 28 5-33 186-214 (365)
412 cd08284 FDH_like_2 Glutathione 44.4 44 0.00096 29.4 5.0 28 5-33 170-198 (344)
413 TIGR02992 ectoine_eutC ectoine 44.3 45 0.00097 30.3 5.1 33 4-36 130-162 (326)
414 cd08294 leukotriene_B4_DH_like 43.9 1.2E+02 0.0027 26.2 7.8 90 5-119 146-236 (329)
415 KOG4039 Serine/threonine kinas 43.7 29 0.00062 29.9 3.4 35 1-35 16-52 (238)
416 cd08287 FDH_like_ADH3 formalde 43.4 1.7E+02 0.0037 25.7 8.6 70 93-168 237-308 (345)
417 TIGR01181 dTDP_gluc_dehyt dTDP 43.1 32 0.0007 29.6 3.9 30 5-34 1-32 (317)
418 TIGR01214 rmlD dTDP-4-dehydror 42.9 35 0.00076 29.3 4.0 30 5-35 1-31 (287)
419 TIGR01772 MDH_euk_gproteo mala 42.6 38 0.00083 30.8 4.3 22 5-26 1-23 (312)
420 PLN02896 cinnamyl-alcohol dehy 42.6 44 0.00095 30.0 4.8 31 4-35 11-42 (353)
421 cd08262 Zn_ADH8 Alcohol dehydr 42.1 94 0.002 27.3 6.8 31 4-35 163-193 (341)
422 cd08289 MDR_yhfp_like Yhfp put 42.0 1E+02 0.0022 26.7 6.9 89 5-119 149-238 (326)
423 cd08236 sugar_DH NAD(P)-depend 42.0 1E+02 0.0022 27.1 7.0 30 5-35 162-192 (343)
424 PLN02702 L-idonate 5-dehydroge 41.9 83 0.0018 28.2 6.5 96 5-119 184-280 (364)
425 PRK12827 short chain dehydroge 41.9 49 0.0011 27.3 4.7 31 3-34 6-37 (249)
426 KOG1203 Predicted dehydrogenas 41.7 36 0.00078 32.4 4.1 31 3-34 79-110 (411)
427 cd08238 sorbose_phosphate_red 41.4 2.3E+02 0.005 26.1 9.5 34 92-125 256-289 (410)
428 PRK05586 biotin carboxylase; V 41.4 40 0.00086 31.8 4.4 31 4-35 3-33 (447)
429 PLN02948 phosphoribosylaminoim 41.3 44 0.00096 33.0 4.9 32 2-34 21-52 (577)
430 PLN02572 UDP-sulfoquinovose sy 41.2 42 0.00091 31.7 4.6 30 4-34 48-78 (442)
431 PRK05086 malate dehydrogenase; 41.1 47 0.001 30.1 4.7 21 4-24 1-22 (312)
432 cd08260 Zn_ADH6 Alcohol dehydr 40.7 95 0.0021 27.4 6.6 30 5-35 168-197 (345)
433 cd08231 MDR_TM0436_like Hypoth 40.6 86 0.0019 27.9 6.3 30 5-35 180-210 (361)
434 PRK06407 ornithine cyclodeamin 40.3 62 0.0013 29.1 5.3 33 4-36 118-150 (301)
435 PRK00258 aroE shikimate 5-dehy 40.1 50 0.0011 29.1 4.6 32 4-35 124-155 (278)
436 PRK09291 short chain dehydroge 40.1 56 0.0012 27.3 4.8 31 4-35 3-34 (257)
437 PRK09987 dTDP-4-dehydrorhamnos 40.0 41 0.0009 29.6 4.1 28 5-34 2-30 (299)
438 TIGR03570 NeuD_NnaD sugar O-ac 39.9 52 0.0011 26.5 4.4 31 5-36 1-31 (201)
439 PLN02260 probable rhamnose bio 39.9 45 0.00097 33.0 4.7 33 3-35 6-40 (668)
440 cd01080 NAD_bind_m-THF_DH_Cycl 39.8 76 0.0016 26.2 5.4 31 4-35 45-76 (168)
441 COG1893 ApbA Ketopantoate redu 39.7 40 0.00086 30.5 4.0 30 4-34 1-30 (307)
442 PRK06141 ornithine cyclodeamin 39.7 61 0.0013 29.2 5.2 33 4-36 126-158 (314)
443 PRK11150 rfaD ADP-L-glycero-D- 39.1 60 0.0013 28.3 5.0 30 6-36 2-32 (308)
444 PLN02214 cinnamoyl-CoA reducta 39.1 51 0.0011 29.6 4.6 31 4-35 11-42 (342)
445 cd08263 Zn_ADH10 Alcohol dehyd 39.1 2.7E+02 0.0058 24.9 9.4 30 5-35 190-220 (367)
446 PRK07577 short chain dehydroge 38.9 62 0.0014 26.6 4.8 34 1-35 1-35 (234)
447 PLN02260 probable rhamnose bio 38.8 51 0.0011 32.6 4.9 32 3-35 380-413 (668)
448 cd08240 6_hydroxyhexanoate_dh_ 38.8 92 0.002 27.6 6.2 90 5-118 178-268 (350)
449 COG4529 Uncharacterized protei 38.8 44 0.00094 32.5 4.2 33 4-36 2-35 (474)
450 PRK14989 nitrite reductase sub 38.7 48 0.001 34.4 4.8 35 1-35 1-38 (847)
451 PRK05565 fabG 3-ketoacyl-(acyl 38.5 61 0.0013 26.8 4.7 30 3-33 5-35 (247)
452 PRK08017 oxidoreductase; Provi 38.4 63 0.0014 27.0 4.8 31 4-35 3-34 (256)
453 COG0451 WcaG Nucleoside-diphos 38.4 51 0.0011 28.3 4.4 30 5-35 2-32 (314)
454 cd08293 PTGR2 Prostaglandin re 38.3 82 0.0018 27.7 5.8 31 4-35 156-188 (345)
455 cd08292 ETR_like_2 2-enoyl thi 38.2 96 0.0021 26.8 6.1 32 4-36 141-173 (324)
456 PRK10084 dTDP-glucose 4,6 dehy 37.8 49 0.0011 29.4 4.3 29 5-33 2-31 (352)
457 PRK12829 short chain dehydroge 37.8 61 0.0013 27.2 4.7 31 3-34 11-42 (264)
458 PRK06182 short chain dehydroge 37.6 66 0.0014 27.5 4.9 33 1-34 1-34 (273)
459 PRK06180 short chain dehydroge 37.6 66 0.0014 27.6 4.9 32 3-35 4-36 (277)
460 PRK06914 short chain dehydroge 37.4 64 0.0014 27.5 4.8 34 1-35 1-35 (280)
461 PF01370 Epimerase: NAD depend 37.4 64 0.0014 26.4 4.7 30 6-36 1-31 (236)
462 PRK12439 NAD(P)H-dependent gly 37.3 46 0.001 30.3 4.1 24 3-26 7-30 (341)
463 TIGR00514 accC acetyl-CoA carb 37.3 57 0.0012 30.7 4.8 33 1-35 1-33 (449)
464 PRK11259 solA N-methyltryptoph 37.1 55 0.0012 29.3 4.5 33 1-34 1-33 (376)
465 PRK03815 murD UDP-N-acetylmura 37.0 53 0.0011 30.8 4.5 29 4-35 1-29 (401)
466 TIGR03589 PseB UDP-N-acetylglu 37.0 60 0.0013 29.0 4.7 32 3-34 4-37 (324)
467 PRK04148 hypothetical protein; 36.1 48 0.0011 26.6 3.5 29 4-34 18-46 (134)
468 PRK00676 hemA glutamyl-tRNA re 36.0 58 0.0013 30.2 4.5 32 4-35 175-206 (338)
469 cd08252 AL_MDR Arginate lyase 35.9 1.6E+02 0.0035 25.5 7.3 92 4-119 151-243 (336)
470 PRK07023 short chain dehydroge 35.9 64 0.0014 26.9 4.5 30 4-34 2-32 (243)
471 TIGR02622 CDP_4_6_dhtase CDP-g 35.8 67 0.0015 28.7 4.9 31 3-34 4-35 (349)
472 PRK06847 hypothetical protein; 35.5 62 0.0013 29.0 4.6 30 3-33 4-33 (375)
473 COG0644 FixC Dehydrogenases (f 35.2 60 0.0013 29.9 4.5 33 1-34 1-33 (396)
474 PRK08849 2-octaprenyl-3-methyl 35.0 61 0.0013 29.5 4.5 33 1-34 1-33 (384)
475 PLN02686 cinnamoyl-CoA reducta 34.8 69 0.0015 29.2 4.8 33 2-35 52-85 (367)
476 PF00743 FMO-like: Flavin-bind 34.7 55 0.0012 32.0 4.3 29 4-33 2-30 (531)
477 PRK08264 short chain dehydroge 34.3 79 0.0017 26.1 4.8 30 4-34 7-38 (238)
478 PRK08013 oxidoreductase; Provi 33.9 63 0.0014 29.7 4.4 33 1-34 1-33 (400)
479 PLN02858 fructose-bisphosphate 33.8 46 0.001 36.4 4.0 31 4-36 5-35 (1378)
480 PRK09288 purT phosphoribosylgl 33.7 78 0.0017 28.9 5.0 32 3-35 12-43 (395)
481 PF13241 NAD_binding_7: Putati 33.7 82 0.0018 23.3 4.3 33 3-36 7-39 (103)
482 PLN03154 putative allyl alcoho 33.6 85 0.0018 28.3 5.2 31 4-35 160-191 (348)
483 TIGR01142 purT phosphoribosylg 33.5 60 0.0013 29.4 4.2 30 5-35 1-30 (380)
484 PLN02172 flavin-containing mon 33.5 63 0.0014 30.9 4.4 30 3-33 10-39 (461)
485 PRK14194 bifunctional 5,10-met 33.4 83 0.0018 28.7 5.0 32 4-36 160-192 (301)
486 COG0665 DadA Glycine/D-amino a 33.4 77 0.0017 28.4 4.8 32 2-34 3-34 (387)
487 COG0059 IlvC Ketol-acid reduct 33.3 44 0.00096 30.8 3.2 25 4-29 19-43 (338)
488 PRK10538 malonic semialdehyde 33.3 79 0.0017 26.5 4.6 29 5-34 2-31 (248)
489 cd08259 Zn_ADH5 Alcohol dehydr 33.2 2E+02 0.0043 24.8 7.3 31 4-35 164-195 (332)
490 PRK12320 hypothetical protein; 33.1 66 0.0014 32.7 4.7 30 5-35 2-32 (699)
491 cd05288 PGDH Prostaglandin deh 32.9 2.5E+02 0.0055 24.2 8.0 31 4-35 147-178 (329)
492 PRK08263 short chain dehydroge 32.9 89 0.0019 26.7 5.0 34 1-35 1-35 (275)
493 TIGR03855 NAD_NadX aspartate d 32.7 48 0.0011 28.8 3.3 33 93-126 37-69 (229)
494 PRK06179 short chain dehydroge 32.7 90 0.0019 26.4 4.9 34 1-35 1-36 (270)
495 TIGR01161 purK phosphoribosyla 32.7 64 0.0014 29.2 4.2 29 5-34 1-29 (352)
496 PRK09135 pteridine reductase; 32.5 88 0.0019 25.8 4.8 31 4-35 7-38 (249)
497 PRK07231 fabG 3-ketoacyl-(acyl 32.4 90 0.0019 25.8 4.8 31 4-35 6-37 (251)
498 cd08295 double_bond_reductase_ 32.3 1E+02 0.0022 27.3 5.4 30 5-35 154-184 (338)
499 PLN02583 cinnamoyl-CoA reducta 31.8 78 0.0017 27.7 4.5 31 4-35 7-38 (297)
500 cd08285 NADP_ADH NADP(H)-depen 31.4 3.7E+02 0.008 23.7 9.7 30 4-34 168-198 (351)
No 1
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1e-82 Score=578.36 Aligned_cols=226 Identities=44% Similarity=0.767 Sum_probs=213.7
Q ss_pred CCccEEEEEccChHHHHHHHHHHcC----CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEe-------CCCeE
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-------DDKTL 69 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~----~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~-------~~~~l 69 (227)
||++||||||||||||.++|+++++ +++++|||||+..++++++|||||||+||+|+ ++++++ +++.|
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~~l 79 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDDVL 79 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCCEE
Confidence 7779999999999999999998864 57999999998889999999999999999999 899872 34579
Q ss_pred EECCEEEEEE-eecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeccCccccCC-CC
Q 027137 70 LFGEKPVTVF-GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-EL 146 (227)
Q Consensus 70 ~i~gk~I~v~-~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d-~p~~V~gVN~~~~~~-~~ 146 (227)
.+||++|.++ +++||+++||+++|+|||+||||.|++++.++.|+++||||||||+|++| .|||||||||+.|++ .+
T Consensus 80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence 9999999986 99999999999999999999999999999999999999999999999887 579999999999998 58
Q ss_pred cEEEcCChhhHhHHHHHHHH-hhhcCeeEEEEEEEeeccCCC-----C-CCCccccchhhhhh-----------------
Q 027137 147 NIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITGIR-----P-KKLWMGHHQRIGEV----------------- 202 (227)
Q Consensus 147 ~IVSnaSCtTn~Lap~lk~L-~~~fgI~~~~~TTvha~t~~q-----~-~~d~r~~r~a~~~~----------------- 202 (227)
+||||+|||||||||++|+| ||+|||++++||||||||++| + ||||||+|||++||
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~ 239 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPS 239 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceeccc
Confidence 89999999999999999999 799999999999999999999 4 69999999999998
Q ss_pred -hhccccceeeeccCchhhhhhcccC
Q 027137 203 -AGLLHSTSFLAVLEPLRLLERSCLL 227 (227)
Q Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (227)
+|||++++|++|+||+|++|++|+|
T Consensus 240 L~GKl~G~a~RVPt~nvS~vDLt~~l 265 (361)
T PTZ00434 240 TKGKLTGMSFRVPTPDVSVVDLTFRA 265 (361)
T ss_pred cCCceeeEEEecccCcEeEEEEEEEe
Confidence 9999999999999999999999975
No 2
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=5.3e-76 Score=545.52 Aligned_cols=224 Identities=43% Similarity=0.705 Sum_probs=211.8
Q ss_pred CccEEEEEccChHHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEE
Q 027137 2 GKVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~--~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~ 79 (227)
|++||||||||||||.++|+++++ ++++||+|||+ .++++++|||||||+||+|+ ++++..+++.|.++|+.|+++
T Consensus 74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCCEEEECCEEEEEE
Confidence 358999999999999999998765 57999999996 69999999999999999999 899864556799999999999
Q ss_pred eecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC--CCeEEeccCccccCCC-CcEEEcCChhh
Q 027137 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPE-LNIVSNASCTT 156 (227)
Q Consensus 80 ~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d--~p~~V~gVN~~~~~~~-~~IVSnaSCtT 156 (227)
++++|+++||++.|+||||||||.|+++++++.|+++|||||++|+|.+| +|+||||||++.|++. ++|||||||||
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT 231 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT 231 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence 99999999999999999999999999999999999999999999999765 7999999999999875 78999999999
Q ss_pred HhHHHHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhccccceeee
Q 027137 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLLHSTSFLA 213 (227)
Q Consensus 157 n~Lap~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~~~~~~~~ 213 (227)
|||+|++|+|||+|||+++.||||||||++| +|+||||+|+|++|| +|||++|+|++
T Consensus 232 NcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RV 311 (442)
T PLN02237 232 NCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 311 (442)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCCcccccccccccccccCCcchhhhhceecccCCCceeeEEEec
Confidence 9999999999999999999999999999999 789999999999998 99999999999
Q ss_pred ccCchhhhhhcccC
Q 027137 214 VLEPLRLLERSCLL 227 (227)
Q Consensus 214 ~~~~~~~~~~~~~~ 227 (227)
|+|++|++|++|.|
T Consensus 312 Pt~nvS~vDLt~~l 325 (442)
T PLN02237 312 PTPNVSVVDLVVNV 325 (442)
T ss_pred ccCCceEEEEEEEe
Confidence 99999999999975
No 3
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-74 Score=515.09 Aligned_cols=221 Identities=49% Similarity=0.787 Sum_probs=211.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~-~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
+||||||||||||+++|++.+++ ++|+|||||+ .+++++||||+|||+||+|. ++++.+ ++.+.|+|+.|+++.++
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~-~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVK-DDALVVNGKGIKVLAER 78 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-Cccccc-CCeEEECCceEEEEecC
Confidence 79999999999999999999998 7999999998 79999999999999999999 898864 55799999999999999
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhC-CCCEEEEeCCCCC-CCeEEeccCccccCCCCcEEEcCChhhHhHH
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG-GAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~-GakkVIisaps~d-~p~~V~gVN~~~~~~~~~IVSnaSCtTn~La 160 (227)
+|+++||.++|+|+|+||||.|+++|+++.|+++ |||||++|+|+++ +++||+|||++.|++.+.||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999998 5999999999987 9999999999999988999999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhccccceeeeccCc
Q 027137 161 PLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVLEP 217 (227)
Q Consensus 161 p~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~~~ 217 (227)
|++|+|+++|||++++|||+|+||++| +|+||||+|||++|| +|||++|+|++|||+
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~~ 238 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPN 238 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCccccCcccchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCCC
Confidence 999999999999999999999999999 799999999998884 999999999999999
Q ss_pred hhhhhhcccC
Q 027137 218 LRLLERSCLL 227 (227)
Q Consensus 218 ~~~~~~~~~~ 227 (227)
++++|++..|
T Consensus 239 vs~~dl~v~l 248 (335)
T COG0057 239 VSVVDLTVEL 248 (335)
T ss_pred cEEEEEEEEe
Confidence 9999998754
No 4
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=4.3e-73 Score=514.16 Aligned_cols=221 Identities=40% Similarity=0.686 Sum_probs=209.5
Q ss_pred cEEEEEccChHHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 4 VKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~--~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
+||||||||||||.++|+++++ +++++|||||+ .++++++|||||||+||+|+ ++++.+ ++.|.+||++|+++++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~-~~~l~v~g~~I~v~~~ 78 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLN-ADISAD-ENSITVNGKTIKCVSD 78 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCC-CcEEEc-CCEEEECCEEEEEEEc
Confidence 6999999999999999998866 57999999997 69999999999999999999 899984 5579999999999999
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC--CCeEEeccCccccCC-CCcEEEcCChhhHh
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKP-ELNIVSNASCTTNC 158 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d--~p~~V~gVN~~~~~~-~~~IVSnaSCtTn~ 158 (227)
+||+++||+++|+|+||||||.|+++++++.|+++|||||++|+|++| +|+||||||++.|++ .++|||||||||||
T Consensus 79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~ 158 (337)
T PRK07403 79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNC 158 (337)
T ss_pred CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHH
Confidence 999999999999999999999999999999999999999999999765 599999999999986 47899999999999
Q ss_pred HHHHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhccccceeeecc
Q 027137 159 LAPLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVL 215 (227)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~ 215 (227)
|+|++|+||++|||+++.||||||||++| +|+||||+|+|++|| +||+++|++++|+
T Consensus 159 Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVPt 238 (337)
T PRK07403 159 LAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPT 238 (337)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccccccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEecc
Confidence 99999999999999999999999999999 689999999999888 9999999999999
Q ss_pred CchhhhhhcccC
Q 027137 216 EPLRLLERSCLL 227 (227)
Q Consensus 216 ~~~~~~~~~~~~ 227 (227)
++++++|++|.|
T Consensus 239 ~~vs~~dl~v~l 250 (337)
T PRK07403 239 PNVSVVDLVVQV 250 (337)
T ss_pred CCcEEEEEEEEE
Confidence 999999999875
No 5
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-72 Score=510.84 Aligned_cols=223 Identities=56% Similarity=0.920 Sum_probs=211.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
++||||||||||||.++|++++++++++|||||+..++++++|||||||+||+|+ +++++++ +.|.+||++|++++++
T Consensus 2 ~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~-~~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 2 VVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTD-GFLMIGSKKVHVFFEK 79 (337)
T ss_pred ceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecC-CEEEECCeEEEEEeCC
Confidence 4899999999999999999988788999999998889999999999999999999 8999854 4699999999999999
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeccCccccCCCCcEEEcCChhhHhHHH
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d-~p~~V~gVN~~~~~~~~~IVSnaSCtTn~Lap 161 (227)
||+++||++.|+|+||||||.|+++++++.|+++|||+|++|+|.++ +|+||||||++.|++.++||||||||||||+|
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap 159 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAP 159 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999765 79999999999998777899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEEEeeccCCC-----C---CCCccccchhhhhh------------------hhccccceeeecc
Q 027137 162 LAKVIHDKFGIVEGLMTTVHSITGIR-----P---KKLWMGHHQRIGEV------------------AGLLHSTSFLAVL 215 (227)
Q Consensus 162 ~lk~L~~~fgI~~~~~TTvha~t~~q-----~---~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~ 215 (227)
++|+||++|||+++.||||||+|++| + ++|||++|+++.|| +||+++|++++|+
T Consensus 160 ~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt 239 (337)
T PTZ00023 160 LAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPV 239 (337)
T ss_pred HHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEecc
Confidence 99999999999999999999999999 2 58999999998876 8899999999999
Q ss_pred CchhhhhhcccC
Q 027137 216 EPLRLLERSCLL 227 (227)
Q Consensus 216 ~~~~~~~~~~~~ 227 (227)
++++++|++|.|
T Consensus 240 ~~~s~~dltv~l 251 (337)
T PTZ00023 240 PDVSVVDLTCKL 251 (337)
T ss_pred cCeEEEEEEEEE
Confidence 999999999864
No 6
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-72 Score=511.00 Aligned_cols=222 Identities=40% Similarity=0.686 Sum_probs=210.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
++||||||||||||.++|++++++++++|||||+ .++++++|||||||+||+|+ ++++++ |+.|.+||++|++++++
T Consensus 2 ~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~-~~v~~~-~~~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 2 KTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAF-EDHLLVDGKKIRLLNNR 78 (343)
T ss_pred ceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEec-CCEEEECCEEEEEEEcC
Confidence 4899999999999999999988788999999996 69999999999999999999 899984 55799999999999999
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeccCccccCC-CCcEEEcCChhhHhHH
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLA 160 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d-~p~~V~gVN~~~~~~-~~~IVSnaSCtTn~La 160 (227)
+|+++||++.|+||||||||.|+++++++.|+++|||+|++|+|++| +++||||||++.|++ .++||||||||||||+
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~La 158 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLA 158 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHH
Confidence 99999999999999999999999999999999999999999999766 567799999999987 4789999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhccccceeeeccCc
Q 027137 161 PLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVLEP 217 (227)
Q Consensus 161 p~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~~~ 217 (227)
|++|+||++|||+++.||||||+|++| +|+||||+|++++|| +|||++|+|++|+++
T Consensus 159 p~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~~ 238 (343)
T PRK07729 159 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPN 238 (343)
T ss_pred HHHHHHHHhcCeeEEEEEEEecccCcccccccchhhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeecC
Confidence 999999999999999999999999999 679999999998887 999999999999999
Q ss_pred hhhhhhcccC
Q 027137 218 LRLLERSCLL 227 (227)
Q Consensus 218 ~~~~~~~~~~ 227 (227)
++++|++|.|
T Consensus 239 ~s~~dltv~l 248 (343)
T PRK07729 239 VSLVDLVVDV 248 (343)
T ss_pred eEEEEEEEEE
Confidence 9999999975
No 7
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3e-72 Score=509.21 Aligned_cols=223 Identities=25% Similarity=0.477 Sum_probs=209.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECC-EEEEEEee
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~g-k~I~v~~~ 81 (227)
++||||||||||||.++|++++++++++|||||+..++++++|||||||+||+|+..+++++ ++.|.+|| ++|+++++
T Consensus 2 ~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~-~~~l~i~g~~~i~~~~~ 80 (342)
T PTZ00353 2 PITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVV-GEQIVLNGTQKIRVSAK 80 (342)
T ss_pred CeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEc-CCEEecCCCeEEEEEec
Confidence 47999999999999999999888889999999987899999999999999999951488885 45799998 89999999
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCccccCCCCcEEEcCChhhHhHHH
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~~~~~~~~IVSnaSCtTn~Lap 161 (227)
++|+++||+++|+|+||||||.|.+++.+..|+++|+|||+|++|++|+||||||||++.|++.++||||||||||||+|
T Consensus 81 ~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 160 (342)
T PTZ00353 81 HDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAP 160 (342)
T ss_pred CCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEEEeeccCCC------C--CCCccccchhhhhh------------------hhccccceeeecc
Q 027137 162 LAKVIHDKFGIVEGLMTTVHSITGIR------P--KKLWMGHHQRIGEV------------------AGLLHSTSFLAVL 215 (227)
Q Consensus 162 ~lk~L~~~fgI~~~~~TTvha~t~~q------~--~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~ 215 (227)
++|+||++|||+++.|||||||+ +| + ++||||+|+|+++| +|||++|++++|+
T Consensus 161 vlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt 239 (342)
T PTZ00353 161 VIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPV 239 (342)
T ss_pred HHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEccc
Confidence 99999999999999999999997 55 2 38999999998877 8999999999999
Q ss_pred CchhhhhhcccC
Q 027137 216 EPLRLLERSCLL 227 (227)
Q Consensus 216 ~~~~~~~~~~~~ 227 (227)
++++++|++|.+
T Consensus 240 ~~vs~vdltv~~ 251 (342)
T PTZ00353 240 KKGCAIDMLVRT 251 (342)
T ss_pred cCeEEEEEEEEE
Confidence 999999999964
No 8
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=8.8e-72 Score=504.85 Aligned_cols=221 Identities=47% Similarity=0.824 Sum_probs=208.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
++||||||||||||.++|++++++++++|||||+ .++++++|||||||+||+|+ ++++.++ +.|.++|++|.+++++
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~-~~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKD-GHLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecC-CEEEECCeEEEEEEcC
Confidence 4799999999999999999988788999999996 69999999999999999999 8999854 4699999999999999
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeccCccccCCCCcEEEcCChhhHhHHH
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d-~p~~V~gVN~~~~~~~~~IVSnaSCtTn~Lap 161 (227)
+|+++||+++|+|+||||||.|+++++++.|+++|||+|++|+|+++ +|+||||||++.|++ ++||||||||||||+|
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lap 157 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAP 157 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999875 799999999999975 7899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEEEeeccCCC------CCCCccccchhhhhh------------------hhccccceeeeccCc
Q 027137 162 LAKVIHDKFGIVEGLMTTVHSITGIR------PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVLEP 217 (227)
Q Consensus 162 ~lk~L~~~fgI~~~~~TTvha~t~~q------~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~~~ 217 (227)
++|+||++|||+++.||||||||++| +++|||++|++++|| +||+++|++++|+++
T Consensus 158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~ 237 (331)
T PRK15425 158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 237 (331)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccC
Confidence 99999999999999999999999999 358999999998877 889999999999999
Q ss_pred hhhhhhcccC
Q 027137 218 LRLLERSCLL 227 (227)
Q Consensus 218 ~~~~~~~~~~ 227 (227)
++++|++|.|
T Consensus 238 gs~~dltv~l 247 (331)
T PRK15425 238 VSVVDLTVRL 247 (331)
T ss_pred eEEEEEEEEE
Confidence 9999999864
No 9
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.9e-70 Score=507.33 Aligned_cols=223 Identities=61% Similarity=0.994 Sum_probs=212.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+||||||||||||.++|.+.+++++++++||||+.++++++|||||||+||+|+ ++++..+++.|.++|++|+++++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCCEEEECCEEEEEEecCC
Confidence 699999999999999999987678999999999899999999999999999999 8998634557999999999999999
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCccccCCCCcEEEcCChhhHhHHHHH
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLA 163 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~~~~~~~~IVSnaSCtTn~Lap~l 163 (227)
|+++||+++|+||||||||.|+++++++.|+++||||||||+|++|+|+||||||++.|++.++||||||||||||+|++
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~l 244 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLA 244 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999889999999999999877789999999999999999
Q ss_pred HHHhhhcCeeEEEEEEEeeccCCC------CCCCccccchhhhhh------------------hhccccceeeeccCchh
Q 027137 164 KVIHDKFGIVEGLMTTVHSITGIR------PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVLEPLR 219 (227)
Q Consensus 164 k~L~~~fgI~~~~~TTvha~t~~q------~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~~~~~ 219 (227)
|+||++|||+++.|||||+||++| +++|||++|++++|| +||+++|++++|+++++
T Consensus 245 k~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~gs 324 (421)
T PLN02272 245 KVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVS 324 (421)
T ss_pred HHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCceE
Confidence 999999999999999999999999 368999999998877 88999999999999999
Q ss_pred hhhhcccC
Q 027137 220 LLERSCLL 227 (227)
Q Consensus 220 ~~~~~~~~ 227 (227)
++|++|.|
T Consensus 325 ~~dltv~l 332 (421)
T PLN02272 325 VVDLTCRL 332 (421)
T ss_pred EEEEEEEE
Confidence 99999864
No 10
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=2.9e-70 Score=496.87 Aligned_cols=224 Identities=77% Similarity=1.193 Sum_probs=214.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCc-ceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~-~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
++||||||||||||.++|.+.+.+++++++|||+..++++++|||||||+||+|+ + +++.++|+.|.++|++|+++++
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEEEEEEc
Confidence 5899999999999999999988889999999998899999999999999999998 6 8988677789999999999999
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCccccCCCCcEEEcCChhhHhHHH
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~~~~~~~~IVSnaSCtTn~Lap 161 (227)
+||+++||++.|+||||||||.|+++++++.|+++|||||+||+|++|+|+||||||++.|++.++||||||||||||+|
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap 163 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAP 163 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999998877899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEEEeeccCCC------CCCCccccchhhhhh------------------hhccccceeeeccCc
Q 027137 162 LAKVIHDKFGIVEGLMTTVHSITGIR------PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVLEP 217 (227)
Q Consensus 162 ~lk~L~~~fgI~~~~~TTvha~t~~q------~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~~~ 217 (227)
++|+||++|||+++.||||||||++| +++||||+|+++.|| +||+++|++++|+++
T Consensus 164 ~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~ 243 (338)
T PLN02358 164 LAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVD 243 (338)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcC
Confidence 99999999999999999999999999 368999999998888 899999999999999
Q ss_pred hhhhhhcccC
Q 027137 218 LRLLERSCLL 227 (227)
Q Consensus 218 ~~~~~~~~~~ 227 (227)
++++|++|.+
T Consensus 244 gs~~dl~v~~ 253 (338)
T PLN02358 244 VSVVDLTVRL 253 (338)
T ss_pred eeEEEEEEEE
Confidence 9999999864
No 11
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=2.3e-70 Score=504.22 Aligned_cols=224 Identities=39% Similarity=0.661 Sum_probs=211.7
Q ss_pred CccEEEEEccChHHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEE
Q 027137 2 GKVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~--~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~ 79 (227)
|++||||||||||||.++|++.++ +.+++++|||+ .++++++|||+|||+||+|+ ++++..+|+.|.+||++|+++
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~ 136 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVV 136 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEE
Confidence 358999999999999999999876 57999999997 59999999999999999999 899865667899999999999
Q ss_pred eecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeccCccccCCCCcEEEcCChhhHh
Q 027137 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNC 158 (227)
Q Consensus 80 ~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d-~p~~V~gVN~~~~~~~~~IVSnaSCtTn~ 158 (227)
+++||+++||++.|+||||||||.|.+++.++.|+++|||||++|+|+++ +||||||||++.|++.++|||||||||||
T Consensus 137 ~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~ 216 (395)
T PLN03096 137 SDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNC 216 (395)
T ss_pred EcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHH
Confidence 99999999999999999999999999999999999999999999999765 79999999999998778899999999999
Q ss_pred HHHHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhccccceeeecc
Q 027137 159 LAPLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVL 215 (227)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~ 215 (227)
|+|++|+|||+|||+++.||||||||++| +|+||||+|+++.|| +||+++|++++|+
T Consensus 217 LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv 296 (395)
T PLN03096 217 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 296 (395)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEccccccccccCCCCccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccc
Confidence 99999999999999999999999999999 678999999998887 8999999999999
Q ss_pred CchhhhhhcccC
Q 027137 216 EPLRLLERSCLL 227 (227)
Q Consensus 216 ~~~~~~~~~~~~ 227 (227)
++++++|++|.+
T Consensus 297 ~~gs~~dltv~~ 308 (395)
T PLN03096 297 PNVSVVDLVVQV 308 (395)
T ss_pred cceEEEEEEEEE
Confidence 999999999864
No 12
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=2.2e-69 Score=502.91 Aligned_cols=223 Identities=31% Similarity=0.483 Sum_probs=209.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcC----CCceEEEEe----CCCcChhhhhhhhcccccccCCCCcceEEeC-CCeEEECC
Q 027137 3 KVKIGINGFGRIGRLVARVILQR----DDVELVAVN----DPFITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGE 73 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~----~~~~ivaIn----d~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~-~~~l~i~g 73 (227)
+.||||||||||||.++|.+.++ ++++++||| |. .++++++|||||||+||+|+ +++++++ ++.|++||
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~-~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~~liing 204 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSE-GDLEKRASLLRRDSVHGPFN-GTITVDEENNAIIANG 204 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCC-CCHHHHHHHhhhhcCCCCCC-CceEeecCCCEEEECC
Confidence 46999999999999999998866 479999996 44 69999999999999999999 8998852 56799999
Q ss_pred EEEEEEeecCCCCCCCccCCcc--EEEeecCcccCHHhHHHHHh-CCCCEEEEeCCCCC-CCeEEeccCccccCCCCcEE
Q 027137 74 KPVTVFGVRNPEEIPWAETGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVIISAPSKD-APMFVVGVNENEYKPELNIV 149 (227)
Q Consensus 74 k~I~v~~~~~p~~i~W~~~~vD--iVve~tG~f~~~~~a~~hl~-~GakkVIisaps~d-~p~~V~gVN~~~~~~~~~IV 149 (227)
+.|+++++++|+++||+++|+| +|+||||.|.+++.+..|++ +||||||||+|++| +|+||||||++.|+++++||
T Consensus 205 ~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~II 284 (477)
T PRK08289 205 NYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIV 284 (477)
T ss_pred EEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEE
Confidence 9999999999999999999999 99999999999999999999 89999999999986 79999999999998778899
Q ss_pred EcCChhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhcc
Q 027137 150 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLL 206 (227)
Q Consensus 150 SnaSCtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~ 206 (227)
||||||||||+|++|+||++|||+++.||||||||++| +|+||||+|+|+.|| +|||
T Consensus 285 SnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~hkd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKl 364 (477)
T PRK08289 285 SAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAKALPELAGKL 364 (477)
T ss_pred ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhhhcCcccceeeeeeEecCCChhhhhhhcccccCCcE
Confidence 99999999999999999999999999999999999999 689999999998877 8999
Q ss_pred ccceeeeccCchhhhhhcccC
Q 027137 207 HSTSFLAVLEPLRLLERSCLL 227 (227)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~ 227 (227)
++|++++|+|+++++|++|.|
T Consensus 365 tg~avRVPt~nvS~vdLtv~l 385 (477)
T PRK08289 365 TGNAIRVPTPNVSMAILNLNL 385 (477)
T ss_pred EEEEEEeccccEEEEEEEEEE
Confidence 999999999999999999864
No 13
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=1.1e-68 Score=484.76 Aligned_cols=221 Identities=50% Similarity=0.808 Sum_probs=207.8
Q ss_pred EEEEEccChHHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCE-EEEEEee
Q 027137 5 KIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~--~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk-~I~v~~~ 81 (227)
||||||||||||.++|+++++ +++++|||||+ .++++++|||||||+||+|+ +++++++++.|.++|+ .|.++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence 799999999999999998876 47999999997 79999999999999999999 8999854326999999 9999999
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeccCccccCCCCcEEEcCChhhHhHH
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d-~p~~V~gVN~~~~~~~~~IVSnaSCtTn~La 160 (227)
++|+++||+++|+||||||||.|+++++++.|+++|||||++|+|++| +||||||||++.|++.++||||||||||||+
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 999999999999999999999999999999999999999999999877 7999999999999877789999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhccccceeeeccCc
Q 027137 161 PLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVLEP 217 (227)
Q Consensus 161 p~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~~~ 217 (227)
|++|+||++|||+++.||||||+|++| +++|||++|++++|| +||+++|++++|+++
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~~ 238 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPN 238 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCCCCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEecccC
Confidence 999999999999999999999999999 568999999988776 889999999999999
Q ss_pred hhhhhhcccC
Q 027137 218 LRLLERSCLL 227 (227)
Q Consensus 218 ~~~~~~~~~~ 227 (227)
.+++|++|.+
T Consensus 239 gs~~dl~v~~ 248 (327)
T TIGR01534 239 VSLVDLVLNL 248 (327)
T ss_pred eEEEEEEEEE
Confidence 9999999864
No 14
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.5e-68 Score=480.53 Aligned_cols=221 Identities=32% Similarity=0.596 Sum_probs=208.1
Q ss_pred cEEEEEccChHHHHHHHHHHcC---CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~---~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~ 80 (227)
+||||||||||||.++|+++++ ++++++||||+ .++++++|||||||+||+|+ ++++. +|+.|.+||++|++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~-~~v~~-~~~~l~v~g~~i~v~~ 78 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFA-WDVRQ-ERDQLFVGDDAIRLLH 78 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEe-cCCEEEECCEEEEEEE
Confidence 6999999999999999999874 47999999996 69999999999999999999 89987 4567999999999999
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCC-C-CCeEEeccCccccCCCCcEEEcCChhhHh
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNC 158 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~-d-~p~~V~gVN~~~~~~~~~IVSnaSCtTn~ 158 (227)
+++|+++||++.|+|+||||||.|.++++++.|+++|||+|++|+|++ | .++||||||++.|++.++|||||||||||
T Consensus 79 ~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~ 158 (336)
T PRK13535 79 ERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNC 158 (336)
T ss_pred cCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHH
Confidence 999999999999999999999999999999999999999999999975 5 45899999999998777899999999999
Q ss_pred HHHHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhccccceeeecc
Q 027137 159 LAPLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVL 215 (227)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~ 215 (227)
|+|++|+||++|||+++.||||||||++| +|+||||+|+++.|| +||++.|++++|+
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv 238 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPT 238 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchhhccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeCc
Confidence 99999999999999999999999999999 689999999887776 8999999999999
Q ss_pred CchhhhhhcccC
Q 027137 216 EPLRLLERSCLL 227 (227)
Q Consensus 216 ~~~~~~~~~~~~ 227 (227)
++++++|++|.|
T Consensus 239 ~~gs~~dl~v~~ 250 (336)
T PRK13535 239 INVTAIDLSVTV 250 (336)
T ss_pred cCcEEEEEEEEE
Confidence 999999999864
No 15
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.2e-67 Score=477.37 Aligned_cols=221 Identities=35% Similarity=0.618 Sum_probs=208.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
++||||||||||||.++|.+.++++++++++||+..++++++|||||||+||+|+ ++++. +|+.|.+||++|++++++
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~-~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTA-EGDAIVINGKRIRTTQNK 79 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEE-cCCEEEECCEEEEEEecC
Confidence 4899999999999999999998888999999998889999999999999999999 89987 466799999999999999
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC--CCeEEeccCccccCC-CCcEEEcCChhhHhH
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKP-ELNIVSNASCTTNCL 159 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d--~p~~V~gVN~~~~~~-~~~IVSnaSCtTn~L 159 (227)
+|++++|+ |+|+||||||.|++++.++.|+++|||||++|+|++| +|+||||||++.|++ .++||||||||||||
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999997 9999999999999999999999999999999999754 699999999999987 478999999999999
Q ss_pred HHHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhccccceeeeccC
Q 027137 160 APLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVLE 216 (227)
Q Consensus 160 ap~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~~ 216 (227)
+|++|+||++|||+++.||||||||++| +|+|||++|++++|| +||+++|++++|++
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv~ 237 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPLA 237 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccccccCCCcccccchhheeccccccCCCccccceEccccCCcEEEEEEEeccC
Confidence 9999999999999999999999999999 578999999998886 88999999999999
Q ss_pred chhhhhhcccC
Q 027137 217 PLRLLERSCLL 227 (227)
Q Consensus 217 ~~~~~~~~~~~ 227 (227)
+++++|++|.|
T Consensus 238 ~gs~~dl~v~~ 248 (334)
T PRK08955 238 NASLTDCVFEV 248 (334)
T ss_pred CeEEEEEEEEE
Confidence 99999999864
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=4.6e-65 Score=461.17 Aligned_cols=220 Identities=33% Similarity=0.591 Sum_probs=206.2
Q ss_pred EEEEEccChHHHHHHHHHHcCC---CceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 5 KIGINGFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~---~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
||||||||||||.++|++.+++ ++++++|||. .+.++++|||||||+||+|+ ++++.+ |+.|.++|+.|+++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~-~~v~~~-~~~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFP-GEVKVD-GDCLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCC-CcEEEe-CCEEEECCeEEEEEEc
Confidence 6999999999999999998763 6999999996 69999999999999999999 899874 5679999999999999
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCC-C-CCeEEeccCccccCCCCcEEEcCChhhHhH
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~-d-~p~~V~gVN~~~~~~~~~IVSnaSCtTn~L 159 (227)
++|+++||++.++|+||||||.|.+++.++.|+++|||+|++|+|.+ | .++||||||++.|++.++||||||||||||
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l 157 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI 157 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999965 4 458999999999987788999999999999
Q ss_pred HHHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhccccceeeeccC
Q 027137 160 APLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVLE 216 (227)
Q Consensus 160 ap~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~~ 216 (227)
+|++|+||++|||+++.||||||+|++| +|+||||+|+|++|| +||+++|++++|++
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~ 237 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYHHDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTV 237 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccchhhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEeccc
Confidence 9999999999999999999999999999 678999999998755 99999999999999
Q ss_pred chhhhhhcccC
Q 027137 217 PLRLLERSCLL 227 (227)
Q Consensus 217 ~~~~~~~~~~~ 227 (227)
+++++|++|.+
T Consensus 238 ~~s~~dl~v~~ 248 (325)
T TIGR01532 238 NVTALDLSVTT 248 (325)
T ss_pred CcEEEEEEEEE
Confidence 99999999864
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-62 Score=424.26 Aligned_cols=207 Identities=53% Similarity=0.942 Sum_probs=195.0
Q ss_pred HHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecCCCCCCCccCC
Q 027137 14 IGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 93 (227)
Q Consensus 14 IGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~p~~i~W~~~~ 93 (227)
|||.++ + +.+++++++|||+++.++++||+||||+||+|+ ++++++++ .++++|++|.++++++|..++|.+.+
T Consensus 1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g 74 (285)
T KOG0657|consen 1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKG 74 (285)
T ss_pred CCcccc---c-cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCcccccc
Confidence 466665 2 445999999999999999999999999999999 89998655 48888999999999999999999999
Q ss_pred ccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCccccCCCCcEEEcCChhhHhHHHHHHHHhhhcCee
Q 027137 94 AEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV 173 (227)
Q Consensus 94 vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~~~~~~~~IVSnaSCtTn~Lap~lk~L~~~fgI~ 173 (227)
+|+|+|+||.|.+.+.+..|+++|+||+|||+|+.|.||||+|||+++|++...||||+|||||||||++|+|||+|||+
T Consensus 75 ~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~ 154 (285)
T KOG0657|consen 75 ADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIM 154 (285)
T ss_pred ceeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccc
Confidence 99999999999999999999999999999999999999999999999999877799999999999999999999999999
Q ss_pred EEEEEEEeeccCCC------CCCCccccchhhhhh------------------hhccccceeeeccCchhhhhhcccC
Q 027137 174 EGLMTTVHSITGIR------PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVLEPLRLLERSCLL 227 (227)
Q Consensus 174 ~~~~TTvha~t~~q------~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (227)
+++|||+|++|++| ++|+||++|+|.||| ||||++|+|++|+| ++|||++|+|
T Consensus 155 EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~ 231 (285)
T KOG0657|consen 155 EGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHL 231 (285)
T ss_pred cccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeeccc
Confidence 99999999999999 678999999887776 99999999999999 9999999986
No 18
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=1.2e-51 Score=337.03 Aligned_cols=149 Identities=56% Similarity=0.997 Sum_probs=139.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+||||||||||||.++|+++.++++++++|||+..++++++|||||||+||+|+ ++++.+++ .|.++|++|+++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence 599999999999999999999999999999999889999999999999999999 89998544 7999999999999999
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC--CCeEEeccCccccCCCCcEEEcCCh
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASC 154 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d--~p~~V~gVN~~~~~~~~~IVSnaSC 154 (227)
|+++||++.++|+|+||||.|.+++.++.|+++||||||+|+|++| +||||||||++.|+++++|||++||
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999999999999999999999999999999999999999999986 8999999999999997799999999
No 19
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=1.9e-47 Score=346.66 Aligned_cols=200 Identities=18% Similarity=0.205 Sum_probs=172.2
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChh---hhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD---YMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 6 VgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~---~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
|||||||||||.++|++.+.+++++|+|||. +++ +++|+++|||+|+.+. ..++++++ .+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~-~~~~~~~~-~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEE-FIPRFEEA-GIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCC-cceEeccC-ceEecCC--------
Confidence 6999999999999999988889999999995 777 7888888999994433 35666433 4666654
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC--CCeEEeccCccccCCCCcEEEcCChhhHhHH
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d--~p~~V~gVN~~~~~~~~~IVSnaSCtTn~La 160 (227)
++++. .++|+|+||||.+..+++++.|++.|+|+|++++|++| +++||+|+|++.|.+.+ +|||+|||||||+
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~La 143 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLV 143 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHH
Confidence 44443 37999999999999999999999999999999999887 47999999999998644 9999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEEEeeccCCCCCCCccccchh--------------------hhhhhhccccceeeeccCchhh
Q 027137 161 PLAKVIHDKFGIVEGLMTTVHSITGIRPKKLWMGHHQR--------------------IGEVAGLLHSTSFLAVLEPLRL 220 (227)
Q Consensus 161 p~lk~L~~~fgI~~~~~TTvha~t~~q~~~d~r~~r~a--------------------~~~~~~~~~~~~~~~~~~~~~~ 220 (227)
|++|+|+++|||+++.|||+|+ |++| +||||+|+- ..+++ +++|++++|++++++
T Consensus 144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq--~d~rrgr~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrVPt~~vs~ 218 (333)
T TIGR01546 144 RTLNAINDYSKVDKVRAVMVRR-AADP--NDVKKGPINAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVVPTTLMHV 218 (333)
T ss_pred HHHHHHHHhcCeEEEEEEEEee-cCCh--hhhccCchhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEeCCCCcEE
Confidence 9999999999999999999997 9999 799999941 12344 899999999999999
Q ss_pred hhhcccC
Q 027137 221 LERSCLL 227 (227)
Q Consensus 221 ~~~~~~~ 227 (227)
+|++|.|
T Consensus 219 ~dl~v~l 225 (333)
T TIGR01546 219 HSIMVEL 225 (333)
T ss_pred EEEEEEE
Confidence 9999865
No 20
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=1.5e-46 Score=306.49 Aligned_cols=148 Identities=55% Similarity=0.946 Sum_probs=139.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+||||+|||||||.+++.+.+.+++++++++|+ .++++++|||||||+||+|. .+++++++ .|.+||+.|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence 489999999999999999988889999999997 79999999999999999999 88988544 6999999999999999
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC-CCeEEeccCccccCCCCcEEEcCCh
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASC 154 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d-~p~~V~gVN~~~~~~~~~IVSnaSC 154 (227)
|+++||++.|+|+|+||||.|.+++.++.|+++||||||+|+|++| +++||+|||++.|+++++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9999999999999999999999999999999999999999999987 4699999999999987779999999
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-37 Score=282.47 Aligned_cols=201 Identities=22% Similarity=0.246 Sum_probs=159.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcc---cccccCCCCcceEEeCCCeEEECCEEEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY---DSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllky---DS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~ 80 (227)
+||||||+|||||.+++++.+.+++++++++|. ++++.+|+++| | .||+++ ...+. +++..+.+.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~-~~~~~~-~~~~~-------~~~~~i~V~- 69 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYP-LYVADP-EREKA-------FEEAGIPVA- 69 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCC-ccccCc-ccccc-------ccCCceEEc-
Confidence 799999999999999999998899999999996 58999999884 4 466655 33321 222223331
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCC-CCC--eEEeccCccccCCCCcEEEcCChhhH
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAP--MFVVGVNENEYKPELNIVSNASCTTN 157 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~-d~p--~~V~gVN~~~~~~~~~IVSnaSCtTn 157 (227)
.+++++. .++|+||||||.+.+.+.++.|+++| ++||+++|++ ++| +||+|||++.+.+. ++|+|+|||||
T Consensus 70 -~~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT~ 143 (341)
T PRK04207 70 -GTIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNTT 143 (341)
T ss_pred -CChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHHH
Confidence 2233332 27999999999999999999999999 6799998864 333 58999999998753 48999999999
Q ss_pred hHHHHHHHHhhhcCeeEEEEEEEeeccCCCCCCCccccchhhhhhh-------------------h-ccccceeeeccCc
Q 027137 158 CLAPLAKVIHDKFGIVEGLMTTVHSITGIRPKKLWMGHHQRIGEVA-------------------G-LLHSTSFLAVLEP 217 (227)
Q Consensus 158 ~Lap~lk~L~~~fgI~~~~~TTvha~t~~q~~~d~r~~r~a~~~~~-------------------~-~~~~~~~~~~~~~ 217 (227)
||+|++|+||++|||+++.|||||++|+. +++| |++++||- . ++++|++++|+++
T Consensus 144 ~l~~~l~~L~~~fgI~~~~vTtv~a~td~---~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~i~~~avrVPv~~ 218 (341)
T PRK04207 144 GLCRTLCALDRAFGVKKVRATLVRRAADP---KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPDLDITTMAVKVPTTL 218 (341)
T ss_pred HHHHHHHHHHHhcCceEEEEEEEEcCCCc---chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCCCceEEEEEEcCCCC
Confidence 99999999999999999999999999964 3553 55555441 0 3788999999999
Q ss_pred hhhhhhcccC
Q 027137 218 LRLLERSCLL 227 (227)
Q Consensus 218 ~~~~~~~~~~ 227 (227)
.++++.++.|
T Consensus 219 gh~~~v~v~l 228 (341)
T PRK04207 219 MHMHSVNVEL 228 (341)
T ss_pred ceEEEEEEEE
Confidence 9998888753
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.95 E-value=2.5e-27 Score=213.39 Aligned_cols=155 Identities=20% Similarity=0.300 Sum_probs=130.2
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEE
Q 027137 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (227)
Q Consensus 1 m~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~ 79 (227)
|.+++||| | +|.+||.+++.|.++. |+ +.+. ++| +|. -.+ .|+.+.++|+.+.|
T Consensus 1 ~~~~~iAi-GATg~VG~~~l~~Leer~-fp---v~~l--------~l~--~s~-------~~s--~gk~i~f~g~~~~V- 55 (322)
T PRK06901 1 MATLNIAI-AAEFELSEKLLEALEQSD-LE---IEQI--------SIV--EIE-------PFG--EEQGIRFNNKAVEQ- 55 (322)
T ss_pred CCcceEEE-ecCcHHHHHHHHHHHhcC-Cc---hhhe--------eec--ccc-------ccc--CCCEEEECCEEEEE-
Confidence 66789999 9 8999999999998874 65 2222 443 331 011 35679999999998
Q ss_pred eecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCC--CCcEEEcC
Q 027137 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSNA 152 (227)
Q Consensus 80 ~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~--~~~IVSna 152 (227)
++.++.+|. ++|+||+ +|...++++++...++|| +|||++| +|+|++||+||++.+.. ..+||+||
T Consensus 56 --~~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanP 128 (322)
T PRK06901 56 --IAPEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLP 128 (322)
T ss_pred --EECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECC
Confidence 345666775 8999999 999999999999999999 8999997 36999999999998775 35799999
Q ss_pred ChhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 153 SCtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
+|+|.+|++.|+|||+.|||+++.+|||||+|++.
T Consensus 129 NCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG 163 (322)
T PRK06901 129 DPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTD 163 (322)
T ss_pred cHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcC
Confidence 99999999999999999999999999999999997
No 23
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.94 E-value=8.6e-27 Score=211.99 Aligned_cols=166 Identities=23% Similarity=0.299 Sum_probs=135.9
Q ss_pred cEEEEEc-cChHHHHHHHHHHc--CCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEe
Q 027137 4 VKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~--~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~ 80 (227)
+||+|+| .|.+|+.++|.|.+ .|.++++++.... + .|+.+.++|+.+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~-------------~-------------~g~~l~~~g~~i~v~- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR-------------S-------------AGKELSFKGKELKVE- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc-------------c-------------CCCeeeeCCceeEEe-
Confidence 5999999 99999999999987 4667888775431 1 122344556555552
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeccCccccCCC--CcEEEcCC
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYKPE--LNIVSNAS 153 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~-----d~p~~V~gVN~~~~~~~--~~IVSnaS 153 (227)
+++..+|. ++|+||+|+|.+.+++.++.|+++|+ +||+.+++ ++|+++||+|++.++.. .++||||+
T Consensus 55 --d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~ 128 (334)
T PRK14874 55 --DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPN 128 (334)
T ss_pred --eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECcc
Confidence 45555785 89999999999999999999999998 78987752 47999999999998764 47999999
Q ss_pred hhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC--------------------CCCCccccchhhhhh
Q 027137 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR--------------------PKKLWMGHHQRIGEV 202 (227)
Q Consensus 154 CtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q--------------------~~~d~r~~r~a~~~~ 202 (227)
|+|+|++|.++||+++|+|+++.|||+|++|+.. +++++|+.|+++.|+
T Consensus 129 C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~ni 197 (334)
T PRK14874 129 CSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNV 197 (334)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcc
Confidence 9999999999999999999999999999999733 146888988887777
No 24
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.92 E-value=2.2e-24 Score=196.84 Aligned_cols=150 Identities=25% Similarity=0.372 Sum_probs=118.8
Q ss_pred EEEEEc-cChHHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 5 KIGING-FGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~--~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
||+|+| .|.+|+.+++.|.++ |.++++.+... .+ .|+.+.+.|+.+.+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-------------~~-------------~g~~~~~~~~~~~~~~- 53 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-------------RS-------------AGRKVTFKGKELEVNE- 53 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-------------cc-------------CCCeeeeCCeeEEEEe-
Confidence 689999 999999999998874 44555444321 01 1333445555544422
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCC--CCcEEEcCCh
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSNASC 154 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~--~~~IVSnaSC 154 (227)
-++ ..|. ++|+||+|+|.+.+++.++.|+++|+ +|||.++ +|+|++|||||++.++. ..++||||+|
T Consensus 54 ~~~--~~~~--~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C 127 (339)
T TIGR01296 54 AKI--ESFE--GIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNC 127 (339)
T ss_pred CCh--HHhc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCc
Confidence 222 2353 89999999999999999999999998 6898875 24799999999998875 3559999999
Q ss_pred hhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 155 tTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
+|+|+++.++||+++|+|+++.|||+|++|+++
T Consensus 128 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG 160 (339)
T TIGR01296 128 STIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAG 160 (339)
T ss_pred HHHHHHHHHHHHHHhcCccEEEEEeeechhhcC
Confidence 999999999999999999999999999999985
No 25
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.92 E-value=1.7e-24 Score=195.65 Aligned_cols=154 Identities=24% Similarity=0.397 Sum_probs=124.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHcC-CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCe-EEECCEEEEEEe
Q 027137 4 VKIGING-FGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKT-LLFGEKPVTVFG 80 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~-~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~-l~i~gk~I~v~~ 80 (227)
+||||+| +|.+|+.+++.|.++ +.++.+.+- .| +-++ |+. +.+.|+.+.+..
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~---------------AS--------~rSa--G~~~~~f~~~~~~v~~ 56 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLL---------------AS--------ARSA--GKKYIEFGGKSIGVPE 56 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEE---------------ec--------cccc--CCccccccCccccCcc
Confidence 6999999 999999999999885 334322221 22 1111 222 667777666622
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCC--CCc-EEEcC
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELN-IVSNA 152 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~--~~~-IVSna 152 (227)
.-.+.+.|. ++||||+|.|...+++.++...++|+ +|||++| +|+|++||+||++.+.. ..+ ||+||
T Consensus 57 -~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 57 -DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred -ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 125667786 89999999999999999999999998 9999997 47999999999987654 234 99999
Q ss_pred ChhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 153 SCtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
+|||.+|++.||||+++|||+++.+|||||+|++.
T Consensus 132 NCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG 166 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAG 166 (334)
T ss_pred ChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcC
Confidence 99999999999999999999999999999999998
No 26
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.91 E-value=2.4e-24 Score=197.69 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=125.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
+||||+| +|.+|+.+++.|.+.++|++..+ +++ .|.. + .|+.+.++|+.+.|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~-----------~~~--ss~~--------s--~g~~~~f~~~~~~v~--- 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRP-----------VFF--STSQ--------L--GQAAPSFGGTTGTLQ--- 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccE-----------EEE--Echh--------h--CCCcCCCCCCcceEE---
Confidence 3899999 99999999999986666763211 222 2210 1 244567778777663
Q ss_pred CCCCC-CCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCC--CCcE--EEcC
Q 027137 83 NPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNI--VSNA 152 (227)
Q Consensus 83 ~p~~i-~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~--~~~I--VSna 152 (227)
+.+++ .|. ++|+||+|.|...+++.++...++|.+.+|||++| +|+|++||+||++.+.. ..+| |+||
T Consensus 55 ~~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianP 132 (366)
T TIGR01745 55 DAFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGG 132 (366)
T ss_pred cCccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECc
Confidence 34343 454 89999999999999999999999995448999997 36999999999997764 2567 8999
Q ss_pred ChhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 153 SCtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
+|||..|++.|+|||+.|||+++.+|||||+|++.
T Consensus 133 NCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG 167 (366)
T TIGR01745 133 NCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGG 167 (366)
T ss_pred CHHHHHHHHHHHHHHhccCccEEEEEechhhhhcC
Confidence 99999999999999999999999999999999997
No 27
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.88 E-value=7.2e-22 Score=180.66 Aligned_cols=202 Identities=21% Similarity=0.234 Sum_probs=138.0
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEE-eCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEE
Q 027137 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (227)
Q Consensus 1 m~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaI-nd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v 78 (227)
||++||+|+| +|.+|+.+++.+.+.|.++++++ .+.. +.... +++.++ +. . .+. +.-.-+.+.+
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~-~~G~~-----~~~~~~-~~-~-----~~~-~~~~~~~~~v 66 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASER-SAGKT-----YGEAVR-WQ-L-----DGP-IPEEVADMEV 66 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChh-hcCCc-----cccccc-cc-c-----ccc-ccccccceEE
Confidence 7789999999 99999999999999999999998 3321 11100 011110 00 0 000 0000012333
Q ss_pred EeecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCC---------
Q 027137 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--------- 144 (227)
Q Consensus 79 ~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~--------- 144 (227)
...+++. |. ++|+||+|++...+.+.++...++|++ +|+.++ ++.|.+++++|++.|..
T Consensus 67 -~~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~--vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~ 139 (349)
T PRK08664 67 -VSTDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKP--VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRG 139 (349)
T ss_pred -EeCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCE--EEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhcc
Confidence 2234554 32 799999999999988888877788884 455554 24789999999986632
Q ss_pred -CCcEEEcCChhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCCCCCCccccchhhhhh---------------------
Q 027137 145 -ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIRPKKLWMGHHQRIGEV--------------------- 202 (227)
Q Consensus 145 -~~~IVSnaSCtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q~~~d~r~~r~a~~~~--------------------- 202 (227)
+.++||||+|+|+|+++.++||++ |||+++.|||+|++|+++ +..+..+.++.|+
T Consensus 140 ~~~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG--~~~~~~~~~~~N~~p~~~~~ehrh~~Ei~~~l~~ 216 (349)
T PRK08664 140 WDGFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAG--YPGVPSMDIVDNVIPYIGGEEEKIEKETLKILGK 216 (349)
T ss_pred CCceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCC--cccchhhhhhcCcccccCchhhhhhHHHHHHhhh
Confidence 136999999999999999999999 999999999999999999 1112222222222
Q ss_pred ---------hhccccceeeeccCchhhhhhccc
Q 027137 203 ---------AGLLHSTSFLAVLEPLRLLERSCL 226 (227)
Q Consensus 203 ---------~~~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
+.+++.|..++|+..-.+.+.++.
T Consensus 217 ~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~ 249 (349)
T PRK08664 217 FEGGKIVPADFPISATCHRVPVIDGHTEAVFVK 249 (349)
T ss_pred cccccccCCCceEEEEeEEccccccEEEEEEEE
Confidence 345778888888877766665554
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.87 E-value=1.7e-21 Score=178.04 Aligned_cols=155 Identities=18% Similarity=0.344 Sum_probs=125.7
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
.+||||+| +|.+|+.++|.|.+.++|++.-+ +++ .|. -+ .|+.+.+.|+.+.+. +
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l-----------~~~--aS~--------~s--aGk~~~~~~~~l~v~-~ 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEV-----------TLL--SSK--------RS--AGKTVQFKGREIIIQ-E 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccE-----------EEE--ECc--------cc--CCCCeeeCCcceEEE-e
Confidence 57999999 89999999999987788873211 111 221 01 255577777766663 3
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCCCCcEEEcCChhh
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKPELNIVSNASCTT 156 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~~~~IVSnaSCtT 156 (227)
-+++. |. ++|+||+|+|...+++.++...++|+ +|||.++ .|+|+++|+||.+.+....+||+||+|+|
T Consensus 61 ~~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~t 134 (347)
T PRK06728 61 AKINS--FE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSA 134 (347)
T ss_pred CCHHH--hc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHH
Confidence 34544 43 79999999999999999999989998 7899986 35899999999998875447999999999
Q ss_pred HhHHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 157 n~Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
++++..|+||+++++|+++.++|+|++|++.
T Consensus 135 t~~~laL~PL~~~~~i~~v~V~t~qavSGAG 165 (347)
T PRK06728 135 LQMVTALQPIRKVFGLERIIVSTYQAVSGSG 165 (347)
T ss_pred HHHHHHHHHHHHcCCccEEEEEEeecccccc
Confidence 9999999999999999999999999999997
No 29
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.87 E-value=3.3e-21 Score=175.74 Aligned_cols=153 Identities=25% Similarity=0.308 Sum_probs=128.2
Q ss_pred CccEEEEEc-cChHHHHHHHHHHc--CCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEE
Q 027137 2 GKVKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (227)
Q Consensus 2 ~~~kVgI~G-~GrIGr~~~r~l~~--~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v 78 (227)
+++||||+| +|.+|+.++|.|.+ .|.++++.+... .| .|+.+.++|+.+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-------------~s-------------aG~~~~~~~~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE-------------ES-------------AGETLRFGGKSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-------------Cc-------------CCceEEECCcceEE
Confidence 479999999 89999999999988 577887777532 11 14456666766666
Q ss_pred EeecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCC--CCcEEEc
Q 027137 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSN 151 (227)
Q Consensus 79 ~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~--~~~IVSn 151 (227)
. ++++++|. ++|+||+|++...+++.++...++|+ +||+.++ +|+|+++|++|.+.++. +.++|+|
T Consensus 57 ~---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAn 129 (336)
T PRK08040 57 Q---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAV 129 (336)
T ss_pred E---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEEC
Confidence 3 56778886 79999999999999999999989998 6899886 25899999999954442 4679999
Q ss_pred CChhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 152 aSCtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
|+|+|++++..|+||+++++|+++.++|++++|+..
T Consensus 130 PgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG 165 (336)
T PRK08040 130 ADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHG 165 (336)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccC
Confidence 999999999999999999999999999999999997
No 30
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.86 E-value=2.3e-21 Score=178.33 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=122.3
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCce---EEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEE
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~---ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~ 79 (227)
+||||+| +|.+|+.+++.+++.++|+ ++...+. .| .++.+.++|+...++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-------------~s-------------g~~~~~f~g~~~~v~ 55 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-------------QA-------------GGAAPSFGGKEGTLQ 55 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-------------hh-------------CCcccccCCCcceEE
Confidence 6999999 8999999999676666776 3332211 00 122245667666665
Q ss_pred eecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCCC--C--cEEE
Q 027137 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKPE--L--NIVS 150 (227)
Q Consensus 80 ~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~~--~--~IVS 150 (227)
...+++. |. ++|+||+|+|...+++.++...++|++.+|||+++ +|+|++||+||++.+... . ++|+
T Consensus 56 ~~~~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa 131 (369)
T PRK06598 56 DAFDIDA--LK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV 131 (369)
T ss_pred ecCChhH--hc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE
Confidence 4333443 43 79999999999999999999999996558999987 369999999999977642 2 4899
Q ss_pred cCChhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 151 naSCtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
||+|+|++++..|+||++.++|+++.++|+|++|++.
T Consensus 132 nPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG 168 (369)
T PRK06598 132 GGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAG 168 (369)
T ss_pred cCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccC
Confidence 9999999999999999999999999999999999997
No 31
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.82 E-value=1.3e-19 Score=165.35 Aligned_cols=152 Identities=17% Similarity=0.249 Sum_probs=123.1
Q ss_pred ccEEEEEc-cChHHHHHHHHHHc--CCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEE
Q 027137 3 KVKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~--~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~ 79 (227)
|+||+|+| +|.+|+.++|.|.+ .|.++++.+.+. .+ . |+.+.+.|+.+.+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-------------~~-a------------G~~l~~~~~~l~~- 56 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-------------ES-A------------GHSVPFAGKNLRV- 56 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-------------cc-C------------CCeeccCCcceEE-
Confidence 58999999 89999999999984 467777777553 11 1 2234445544444
Q ss_pred eecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC----CCCCeEEeccCccccCC--CCcEEEcCC
Q 027137 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS----KDAPMFVVGVNENEYKP--ELNIVSNAS 153 (227)
Q Consensus 80 ~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps----~d~p~~V~gVN~~~~~~--~~~IVSnaS 153 (227)
.+++..+|. ++|+||.|++...+.+.++...++|+ +||+.++ +|+|+++|++|.+.+.. +.+||+||+
T Consensus 57 --~~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPg 130 (336)
T PRK05671 57 --REVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPS 130 (336)
T ss_pred --eeCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCC
Confidence 223333463 89999999999999999999889998 5888886 36899999999998764 257999999
Q ss_pred hhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 154 CtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
|+|+++...|+||++.++++++.++|++++|+..
T Consensus 131 C~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG 164 (336)
T PRK05671 131 ASAVALAVALAPLKGLLDIQRVQVTACLAVSSLG 164 (336)
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccC
Confidence 9999999999999999999999999999999998
No 32
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.81 E-value=3.4e-19 Score=162.61 Aligned_cols=162 Identities=20% Similarity=0.299 Sum_probs=117.7
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECC--EEEEEEe
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE--KPVTVFG 80 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~g--k~I~v~~ 80 (227)
+||+|+| .|.+|+.+++.+.+++.++++++.+...+.. .. +...+..+ .+ ++ + .+ ..+.+ +
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g---~~--~~~~~~~~-----~~-~~--~--~~~~~~~~~-~ 64 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAG---KR--YGEAVKWI-----EP-GD--M--PEYVRDLPI-V 64 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcC---Cc--chhhcccc-----cc-CC--C--ccccceeEE-E
Confidence 4899999 8999999999998888899999965410100 00 01101000 00 00 0 01 12222 2
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCC---------CC
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP---------EL 146 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~---------~~ 146 (227)
..+++ .| .++|+||+|++...+.+.++...++|++ +|+.++ +++|++++++|++.|.. ..
T Consensus 65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~--VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~ 138 (341)
T TIGR00978 65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKP--VFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKG 138 (341)
T ss_pred eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCE--EEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCc
Confidence 22333 34 3799999999999999999888889984 565554 34899999999987753 13
Q ss_pred cEEEcCChhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 147 NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 147 ~IVSnaSCtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
++|+||+|+|+|+++.++||+++++|+++.+||+|++|+.|
T Consensus 139 ~iVanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG 179 (341)
T TIGR00978 139 FIVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAG 179 (341)
T ss_pred cEEeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCC
Confidence 59999999999999999999999999999999999999999
No 33
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.80 E-value=1e-18 Score=159.89 Aligned_cols=152 Identities=19% Similarity=0.268 Sum_probs=121.0
Q ss_pred ccEEEEEc-cChHHHHHHHHHHc--CCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEE
Q 027137 3 KVKIGING-FGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~--~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~ 79 (227)
++||+|+| .|.+|+.++|.|.+ .|.++++.+... .| - |+.+.++|+.+.+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-------------rs-a------------Gk~~~~~~~~~~v- 59 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-------------RS-A------------GKKVTFEGRDYTV- 59 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-------------CC-C------------CCeeeecCceeEE-
Confidence 58999999 99999999999987 566777666432 11 1 2233344544444
Q ss_pred eecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCCC------CcE
Q 027137 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKPE------LNI 148 (227)
Q Consensus 80 ~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~~------~~I 148 (227)
..-+++ .|. ++|+||.|+|...+++.++...++|+ +||+.++ ++.|+++|++|.+.+... .++
T Consensus 60 ~~~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i 133 (344)
T PLN02383 60 EELTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL 133 (344)
T ss_pred EeCCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence 222333 343 79999999999999999998888898 6899886 358999999999987652 349
Q ss_pred EEcCChhhHhHHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 149 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 149 VSnaSCtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
|+||+|+|++++..|+||+++++|+++.++|++++|+..
T Consensus 134 IanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG 172 (344)
T PLN02383 134 IANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAG 172 (344)
T ss_pred EECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccC
Confidence 999999999999999999999999999999999999998
No 34
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.79 E-value=4.8e-20 Score=151.61 Aligned_cols=69 Identities=30% Similarity=0.479 Sum_probs=64.5
Q ss_pred HHHHHHHHhhhcCeeEEEEEEEeeccCCC-----CCCCccccchhhhhh------------------hhccccceeeecc
Q 027137 159 LAPLAKVIHDKFGIVEGLMTTVHSITGIR-----PKKLWMGHHQRIGEV------------------AGLLHSTSFLAVL 215 (227)
Q Consensus 159 Lap~lk~L~~~fgI~~~~~TTvha~t~~q-----~~~d~r~~r~a~~~~------------------~~~~~~~~~~~~~ 215 (227)
|+|++|+|+++|||+++.|||+|++|++| +|+||||+|++++|| |||+++|+|++|+
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVPt 80 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPHKDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVPT 80 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS--SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEESS
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeeccccccccccccccccccccccchhhhhhhhhccCcceeeEEeeee
Confidence 79999999999999999999999999999 679999999998876 8999999999999
Q ss_pred CchhhhhhcccC
Q 027137 216 EPLRLLERSCLL 227 (227)
Q Consensus 216 ~~~~~~~~~~~~ 227 (227)
++++++|++|+|
T Consensus 81 ~~~s~~dl~~~l 92 (157)
T PF02800_consen 81 PNVSLHDLTVEL 92 (157)
T ss_dssp SSEEEEEEEEEE
T ss_pred cccCceEEEEec
Confidence 999999999975
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.72 E-value=8e-17 Score=147.22 Aligned_cols=158 Identities=22% Similarity=0.254 Sum_probs=119.4
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEE
Q 027137 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (227)
Q Consensus 1 m~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~ 79 (227)
|| +||+|+| .|.+|+.+++.+.+.++++++++.+.....+.+ ...|+.+. + + . ...+
T Consensus 1 ~m-~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l------~~~~~~~~--------~--~-~---~~~~- 58 (343)
T PRK00436 1 MM-IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPL------SDVHPHLR--------G--L-V---DLVL- 58 (343)
T ss_pred CC-eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcch------HHhCcccc--------c--c-c---Ccee-
Confidence 54 7999999 699999999999998899999988741111111 11111111 0 0 0 0111
Q ss_pred eecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCC------C------------------CCeEEe
Q 027137 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK------D------------------APMFVV 135 (227)
Q Consensus 80 ~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~------d------------------~p~~V~ 135 (227)
. +.++..|. ++|+||.|++.....+.+...+++|+ .|||.+++ | .|..+|
T Consensus 59 ~--~~~~~~~~--~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lp 132 (343)
T PRK00436 59 E--PLDPEILA--GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLP 132 (343)
T ss_pred e--cCCHHHhc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecC
Confidence 1 12222333 69999999999999999998888886 78988852 3 589999
Q ss_pred ccCccccCCCCcEEEcCChhhHhHHHHHHHHhhhcCee--EEEEEEEeeccCCC
Q 027137 136 GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITGIR 187 (227)
Q Consensus 136 gVN~~~~~~~~~IVSnaSCtTn~Lap~lk~L~~~fgI~--~~~~TTvha~t~~q 187 (227)
++|.+.+.. .++|+||+|+|+++...|+||++..+|+ ++.++|++++|+..
T Consensus 133 e~~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG 185 (343)
T PRK00436 133 ELNREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAG 185 (343)
T ss_pred ccCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCC
Confidence 999998864 5899999999999999999999999898 89999999999998
No 36
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.67 E-value=3e-16 Score=141.13 Aligned_cols=156 Identities=19% Similarity=0.141 Sum_probs=115.2
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~ 80 (227)
|+++||||+|+|.||+.++..+.+.++++++++.|+..+.+-+.. ...+|. ... +.+..- +
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~----A~~~Gi----~~~--------~~~ie~-L-- 62 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLAR----ARRLGV----ATS--------AEGIDG-L-- 62 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHH----HHHcCC----Ccc--------cCCHHH-H--
Confidence 347999999999999998988888788999999987322222211 111221 000 111000 0
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-CCCCeEEeccCccccCC--CCcEEEcCChhhH
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNENEYKP--ELNIVSNASCTTN 157 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-~d~p~~V~gVN~~~~~~--~~~IVSnaSCtTn 157 (227)
.++.+|. ++|+||+|||.....+.+...+++|+ .+|+..+ ...|++||+||.+.... ..++|+|++|+|+
T Consensus 63 ---L~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati 135 (302)
T PRK08300 63 ---LAMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATI 135 (302)
T ss_pred ---HhCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHH
Confidence 1122343 79999999999999999999999997 5666554 57999999999987654 4689999999999
Q ss_pred hHHHHHHHHhhhcCeeEEEEEEEeecc
Q 027137 158 CLAPLAKVIHDKFGIVEGLMTTVHSIT 184 (227)
Q Consensus 158 ~Lap~lk~L~~~fgI~~~~~TTvha~t 184 (227)
.++..++++++. ++.+.. +||+|.+
T Consensus 136 ~~v~Al~~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 136 PIVAAVSRVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred HHHHHhcccCcC-ceeeee-eeehhhc
Confidence 999999998865 888876 8999887
No 37
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.66 E-value=8.2e-16 Score=140.79 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=116.9
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCE-EEEEEee
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk-~I~v~~~ 81 (227)
+||+|+| +|.+|+.++|.+.+.|+++++++.++..+.... +...|+.+. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~-----~~~~~~~l~---------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKP-----VSEVHPHLR---------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCC-----hHHhCcccc---------------ccCCcee-ec
Confidence 4899999 699999999999999999999875541111000 011111111 10 1112 11
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC----C--------------------CCCeEEecc
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS----K--------------------DAPMFVVGV 137 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps----~--------------------d~p~~V~gV 137 (227)
.++++ |.+ ++|+||.|++...+++.++..+++|+ +||+.++ + +.|..+|++
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 22332 322 79999999999999999999888885 6888875 2 378999999
Q ss_pred CccccCCCCcEEEcCChhhHhHHHHHHHHhhhcCee--EEEEEEEeeccCCC
Q 027137 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITGIR 187 (227)
Q Consensus 138 N~~~~~~~~~IVSnaSCtTn~Lap~lk~L~~~fgI~--~~~~TTvha~t~~q 187 (227)
|.+.+.. .++|+||+|.++++...|+||++++.|+ ++.++|++++|+..
T Consensus 135 n~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG 185 (346)
T TIGR01850 135 HREEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAG 185 (346)
T ss_pred CHHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccC
Confidence 9888754 6799999999999999999999998887 79999999999998
No 38
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.65 E-value=1.3e-15 Score=137.75 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=111.0
Q ss_pred CccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEe
Q 027137 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (227)
Q Consensus 2 ~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~ 80 (227)
|++||||+| +|.+|+.++|.|.++|+++++++.... ++.+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~----------------------------~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK----------------------------RKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC----------------------------CCcc-----------
Confidence 358999999 999999999999999999988875420 1001
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCC--CCcEEEcCC
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSNAS 153 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~--~~~IVSnaS 153 (227)
.+.+..|. ++|+||.|++...+++.++...++|+ +|||.++ ++.|..+|++|++..+. ..++|+||+
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 01112344 78999999999999999998888888 5898886 25899999999764432 467999999
Q ss_pred hhhHhHHHHHHHHhhhcCeeEEEEEEEeeccC
Q 027137 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITG 185 (227)
Q Consensus 154 CtTn~Lap~lk~L~~~fgI~~~~~TTvha~t~ 185 (227)
|.++++...|+||+++..|++...++++++|+
T Consensus 116 C~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG 147 (313)
T PRK11863 116 CYPTGAIALLRPLVDAGLLPADYPVSINAVSG 147 (313)
T ss_pred cHHHHHHHHHHHHHHcCCcccCceEEEEEccc
Confidence 99999999999999986666665789999964
No 39
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.64 E-value=1.9e-15 Score=140.13 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=114.4
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
++||+|+| +|.+|+.++|.|.++|+++++.+.... + .|+-- .. .. ..+.+....-+.
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~-------------s-aG~~i----~~-~~--~~l~~~~~~~~~- 95 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADR-------------K-AGQSF----GS-VF--PHLITQDLPNLV- 95 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChh-------------h-cCCCc----hh-hC--ccccCcccccee-
Confidence 47999999 899999999999999999998886531 0 12110 00 00 001111111111
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCC-----C--------CCeEEeccCccc-cC----
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----D--------APMFVVGVNENE-YK---- 143 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~-----d--------~p~~V~gVN~~~-~~---- 143 (227)
+.+..+|. ++|+||.|+|...+.+.++. +++|+ +||+.+++ + .|..++++|.+. |.
T Consensus 96 -~~~~~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~ 169 (381)
T PLN02968 96 -AVKDADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTEL 169 (381)
T ss_pred -cCCHHHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchh
Confidence 12222343 79999999999988888887 56775 57888752 3 688899999874 43
Q ss_pred -----CCCcEEEcCChhhHhHHHHHHHHhhhcCe--eEEEEEEEeeccCCC
Q 027137 144 -----PELNIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITGIR 187 (227)
Q Consensus 144 -----~~~~IVSnaSCtTn~Lap~lk~L~~~fgI--~~~~~TTvha~t~~q 187 (227)
...++|+||+|.|+++...|+||+++++| +++.++|++++|+..
T Consensus 170 ~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG 220 (381)
T PLN02968 170 QREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAG 220 (381)
T ss_pred CHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccC
Confidence 23579999999999999999999999999 789999999999998
No 40
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.64 E-value=1.4e-16 Score=139.35 Aligned_cols=165 Identities=19% Similarity=0.278 Sum_probs=121.8
Q ss_pred CCccEEE-EEc-cChHHHHHHHHHHcCCCceEEEEeCCC--cChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEE
Q 027137 1 MGKVKIG-ING-FGRIGRLVARVILQRDDVELVAVNDPF--ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (227)
Q Consensus 1 m~~~kVg-I~G-~GrIGr~~~r~l~~~~~~~ivaInd~~--~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I 76 (227)
|.-.|+| |.| +|.+|+.++-.|.++|.|+|....... ..-. |. ..|+|+ .+.- +--.-..+
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~---ya-----~a~~wk-qt~~------lp~~~~e~ 65 (361)
T KOG4777|consen 1 MALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKR---YA-----FAGNWK-QTDL------LPESAHEY 65 (361)
T ss_pred CCcccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCc---eE-----ecccch-hccc------ccchhhhh
Confidence 4334677 999 999999999999999988766553321 1111 11 022232 1110 10011234
Q ss_pred EEEeecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCC-------
Q 027137 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP------- 144 (227)
Q Consensus 77 ~v~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~------- 144 (227)
.| ++-+++.|. +.||||...+...+.|.-+.+.++|. +|+|+.+ +++|++||.||+|.++.
T Consensus 66 ~V-~ec~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~ 138 (361)
T KOG4777|consen 66 TV-EECTADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDT 138 (361)
T ss_pred hH-hhcChhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheecccc
Confidence 44 345677765 89999999999989888888888887 8889885 35999999999998764
Q ss_pred ----CCcEEEcCChhhHhHHHHHHHHhhhc-CeeEEEEEEEeeccCCC
Q 027137 145 ----ELNIVSNASCTTNCLAPLAKVIHDKF-GIVEGLMTTVHSITGIR 187 (227)
Q Consensus 145 ----~~~IVSnaSCtTn~Lap~lk~L~~~f-gI~~~~~TTvha~t~~q 187 (227)
..-||.|++|+|..+...+||||++| .|++..++|+||+|+..
T Consensus 139 ~k~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG 186 (361)
T KOG4777|consen 139 GKMGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAG 186 (361)
T ss_pred CCCCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCC
Confidence 13599999999999999999999999 79999999999999988
No 41
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.53 E-value=6e-14 Score=126.66 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=110.4
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
.||+|+| .|..|..++|.|..+|+++++.+.... + |. ..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~-------~----------~~-----------------------~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR-------R----------KD-----------------------AA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc-------c----------cC-----------------------cC
Confidence 5899999 999999999999999999998886531 0 11 00
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCCeEEeccCccccCC--CCcEEEcCChh
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAPMFVVGVNENEYKP--ELNIVSNASCT 155 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~~~--~~~IVSnaSCt 155 (227)
+++++ + .++|+||.|++...+++.++...++|+ +||+.++ ++.|..+|++|.+..+. ..++|+||+|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 11111 1 268999999999999999988888888 5888885 25899999998764432 46899999999
Q ss_pred hHhHHHHHHHHhhhcCeeEEEEEEEeeccC
Q 027137 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITG 185 (227)
Q Consensus 156 Tn~Lap~lk~L~~~fgI~~~~~TTvha~t~ 185 (227)
++++...|+||+++..|++...+++++.|+
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG 146 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSG 146 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 999999999999987777766799999987
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.51 E-value=1.7e-13 Score=122.71 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=112.6
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
++||||+|.|+||+.++..+.+.++++++++.|+..+.+-++.- ..+|. . ....+...-+ +
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A----~~~Gi----~--------~~~~~~e~ll---~ 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA----RELGV----K--------TSAEGVDGLL---A 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH----HHCCC----C--------EEECCHHHHh---c
Confidence 47999999999999998888877789999999973222112111 11110 1 1111111001 1
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCccccCC--CCcEEEcCChhhHhHH
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKP--ELNIVSNASCTTNCLA 160 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~~~~~--~~~IVSnaSCtTn~La 160 (227)
+.++|+|++||+.....+.+...+++|. .||.-.|....|++|+.||.+.... ..++|++++|.|+.++
T Consensus 62 --------~~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~ 132 (285)
T TIGR03215 62 --------NPDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV 132 (285)
T ss_pred --------CCCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence 1268999999999999999999999996 3554555567899999999986554 4689999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEEEeeccC
Q 027137 161 PLAKVIHDKFGIVEGLMTTVHSITG 185 (227)
Q Consensus 161 p~lk~L~~~fgI~~~~~TTvha~t~ 185 (227)
..++.+++...+ ..++||++.+.
T Consensus 133 ~al~r~~d~~~~--~iv~ti~s~S~ 155 (285)
T TIGR03215 133 AAISRVAPVHYA--EIVASIASRSA 155 (285)
T ss_pred HHHHHhhccccE--EEEEEEEeecc
Confidence 999999998755 56788999886
No 43
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.08 E-value=1.2e-10 Score=91.08 Aligned_cols=113 Identities=26% Similarity=0.327 Sum_probs=78.5
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
||+|+| +|.+|+.+++.|.+.|.++++.+.....+.. .++...++.+. + ...+.+.. .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-----~~~~~~~~~~~--------~------~~~~~~~~-~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-----KPLSEVFPHPK--------G------FEDLSVED-AD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-----SBHHHTTGGGT--------T------TEEEBEEE-TS
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-----Ceeehhccccc--------c------ccceeEee-cc
Confidence 799999 9999999999999999999999877532011 11122222111 0 11222211 23
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCC-----CCCeEEeccCccccC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-----DAPMFVVGVNENEYK 143 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~-----d~p~~V~gVN~~~~~ 143 (227)
++.+ .++|+||.|++...+++.++..++.|+ .||+.++. +.|+.+|++|.+.+.
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 3433 289999999999999999999999999 68888762 589999999987653
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.51 E-value=6.5e-07 Score=81.89 Aligned_cols=141 Identities=18% Similarity=0.277 Sum_probs=93.7
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
|+||+|+| .|..|-.++|.|..+|++|+..+.... .... ++...|..+. |. + ..+. +.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~-~~g~-----~~~~~~p~l~--------g~---~---~l~~-~~ 60 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE-RAGK-----PVSDVHPNLR--------GL---V---DLPF-QT 60 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechh-hcCC-----chHHhCcccc--------cc---c---cccc-cc
Confidence 58999999 899999999999999999965554331 0000 0011111111 10 0 1111 22
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCC----C-------------C----CeEEecc---
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK----D-------------A----PMFVVGV--- 137 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~----d-------------~----p~~V~gV--- 137 (227)
.+++.+ ...++|+||.|++...+++.++..++.|+| ||+.+.+ | . .--|||.
T Consensus 61 ~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl 136 (349)
T COG0002 61 IDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPEL 136 (349)
T ss_pred CChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCccc
Confidence 344544 234689999999999999999999999985 7887642 0 0 1345543
Q ss_pred CccccCCCCcEEEcCChhhHhHHHHHHHHhhh
Q 027137 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDK 169 (227)
Q Consensus 138 N~~~~~~~~~IVSnaSCtTn~Lap~lk~L~~~ 169 (227)
|.+++. ..+.|+||.|-.+|....++||-+.
T Consensus 137 ~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 137 HREKIR-GAKLIANPGCYPTAAILALAPLVKA 167 (349)
T ss_pred CHHHHh-cCCEeeCCCchHHHHHHHHHHHHHc
Confidence 333332 3579999999999999999999886
No 45
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.38 E-value=9.1e-07 Score=68.79 Aligned_cols=111 Identities=22% Similarity=0.230 Sum_probs=68.8
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
|++|+| .|++|+.+++.+.+.++++++++.+.. . .....+ ...+++.. .+ +. .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~--~-~~~~~~--~~~~~~~~-----------------~~-~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA--R-SAGKRV--SEAGPHLK-----------------GE-VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech--h-hcCcCH--HHHCcccc-----------------cc-cc--cc
Confidence 689999 699999999999988889999995531 1 000000 00111100 00 00 11
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHH---HHHhCCCCEEEEeCCC-----CCCCeEEeccCcccc
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAA---AHLKGGAKKVIISAPS-----KDAPMFVVGVNENEY 142 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~---~hl~~GakkVIisaps-----~d~p~~V~gVN~~~~ 142 (227)
.+..+|...+.|+||.|++.....+... ..++.|+ ++|+.++ .+.|..++++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 2222344458899999999887766433 2334554 8888775 357999999997654
No 46
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.13 E-value=6.2e-06 Score=75.31 Aligned_cols=91 Identities=26% Similarity=0.369 Sum_probs=64.9
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~ 80 (227)
|+++||||+|+|.||+.+++++.+.++++++++.|.. +++.+. .. .+ ++.
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-~~~~~~-----~~-~~-----------------------v~~ 50 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-GAETLD-----TE-TP-----------------------VYA 50 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-cHHHHh-----hc-CC-----------------------ccc
Confidence 7789999999999999999999988899999999873 222211 00 00 000
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeC
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisa 125 (227)
..+.+. +. .++|+|+-||+.....+.+...+++|.. ||.+.
T Consensus 51 ~~d~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~ 91 (324)
T TIGR01921 51 VADDEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSF 91 (324)
T ss_pred cCCHHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECC
Confidence 011111 11 3789999999999999999999999974 65553
No 47
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.13 E-value=1.1e-05 Score=71.51 Aligned_cols=92 Identities=25% Similarity=0.359 Sum_probs=62.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+||||+|+|+||+.+++.+.+.++++++++.+.....+.... . + . ..+.++ .+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~--------------~--------~--~-~~~~~~--~d 54 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRR--------------A--------L--G-EAVRVV--SS 54 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhh--------------h--------h--c-cCCeee--CC
Confidence 699999999999999999988888999998854211111100 0 0 0 012222 23
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
.+++ +.++|+|+|||+.....+.+...+++|.. |++-.|
T Consensus 55 ~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 55 VDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred HHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 4444 23689999999998888999999999964 555444
No 48
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.11 E-value=8.8e-06 Score=72.34 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=85.8
Q ss_pred CccEEEEEccChHHHHHHHHHHcC--CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEE
Q 027137 2 GKVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~--~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~ 79 (227)
|++||||+|+|.||+.+++.+... +.++++++++.. .+....+ . + + ..+
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~--~~~~~~~----------~--------~-------~-~~~- 51 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA--ADLPPAL----------A--------G-------R-VAL- 51 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC--HHHHHHh----------h--------c-------c-Ccc-
Confidence 468999999999999999988653 348999998862 2211110 0 1 0 111
Q ss_pred eecCCCCC-CCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-CCCCeEEeccCccccCCCCcEEEcCChhhH
Q 027137 80 GVRNPEEI-PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNENEYKPELNIVSNASCTTN 157 (227)
Q Consensus 80 ~~~~p~~i-~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-~d~p~~V~gVN~~~~~~~~~IVSnaSCtTn 157 (227)
-.+++++ .| ..|+|+||.|...-+++++..|++|+.-+++|-.. .| +-|--.+-...-....++ --||-..-
T Consensus 52 -~~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD-~~~~~~l~~~A~~~g~~i-~ipSGAig 125 (267)
T PRK13301 52 -LDGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALAD-DALRARLIAAAEAGGARI-RVPAGAIA 125 (267)
T ss_pred -cCCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcC-HHHHHHHHHHHHhCCCEE-EEeChHHH
Confidence 1345553 44 68999999999999999999999999866666443 23 211101100000011222 23443333
Q ss_pred hHHHHHHHHhhhcCeeEEEEEEEeec
Q 027137 158 CLAPLAKVIHDKFGIVEGLMTTVHSI 183 (227)
Q Consensus 158 ~Lap~lk~L~~~fgI~~~~~TTvha~ 183 (227)
.|- .++.. ...|++++.+||.-+.
T Consensus 126 GlD-~l~aa-~~~~~~~v~~~t~K~P 149 (267)
T PRK13301 126 GLD-YLQAV-AGRDDAEVVYESRKPV 149 (267)
T ss_pred hHH-HHHHh-hccCceEEEEEEecCh
Confidence 332 33333 2368999888877444
No 49
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.96 E-value=3.1e-05 Score=68.88 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=62.6
Q ss_pred CCccEEEEEccChHHHHHHHHHHc-CCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEE
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~-~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~ 79 (227)
|+++||||+|+|+||+.+++.+.+ .++++++++.|+ +++...-+. ..+|. . ..
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a~~~a---~~~g~----------~----------~~- 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRHADFI---WGLRR----------P----------PP- 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHHHHHH---HhcCC----------C----------cc-
Confidence 557999999999999999999986 478999999997 443321111 00110 0 00
Q ss_pred eecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 80 ~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
..+++++.. ++|+|++|++...-.+.+...+++|.. |++
T Consensus 58 -~~~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk~-Vi~ 96 (271)
T PRK13302 58 -VVPLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGKK-AIV 96 (271)
T ss_pred -cCCHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCCc-EEE
Confidence 022333421 579999999998888888899998853 444
No 50
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.91 E-value=2.5e-05 Score=69.20 Aligned_cols=95 Identities=21% Similarity=0.332 Sum_probs=62.4
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
+||+|+| +|++|+.+++.+.+.++++++++.|.. +.+.. .+|. +.+. + +.-.| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~-~~~~~----~~~~--~~~~--------~--~~~~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH-GSSLQ----GTDA--GELA--------G--IGKVG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-Ccccc----CCCH--HHhc--------C--cCcCC--ceee--C
Confidence 6999999 799999999999988899999999841 22111 0111 1000 0 00001 2221 2
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
+++++ ...+|+|+|+|......+.+...+++|.. +|+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 34444 13589999999988888999999999965 555
No 51
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.77 E-value=3.6e-05 Score=72.64 Aligned_cols=95 Identities=21% Similarity=0.362 Sum_probs=58.5
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC---------CceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEE
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF 71 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~---------~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i 71 (227)
|+++||||+|+|.+|+.+++.+.+++ ++++++|.|. +.+.. .. +. .
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~--~~~~~------~~----~~-------------~ 55 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR--DLEKD------RG----VD-------------L 55 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC--Chhhc------cC----CC-------------C
Confidence 77899999999999999998875432 5899999886 22211 00 00 0
Q ss_pred CCEEEEEEeecCCCCCCCccCCccEEEeecCcc-cCHHhHHHHHhCCCCEEEEeCC
Q 027137 72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 72 ~gk~I~v~~~~~p~~i~W~~~~vDiVve~tG~f-~~~~~a~~hl~~GakkVIisap 126 (227)
.+ ..++ .+++++ ..+.++|+|+||||.. ...+.....+++|. .||..++
T Consensus 56 ~~--~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 56 PG--ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred cc--ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 00 0010 223222 1234789999999763 34577778888884 4544444
No 52
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.73 E-value=0.00012 Score=67.23 Aligned_cols=35 Identities=34% Similarity=0.666 Sum_probs=30.3
Q ss_pred CccEEEEEccChHHHHHHHHHHcCC---------CceEEEEeCC
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~---------~~~ivaInd~ 36 (227)
|++||+|+|+|.||+.+++.+.+.+ ++++++|.|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 3699999999999999999987552 6899999985
No 53
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.69 E-value=0.00013 Score=63.58 Aligned_cols=150 Identities=23% Similarity=0.228 Sum_probs=89.0
Q ss_pred cEEEEEccChHHHHHHHHHHcC-CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~-~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
++|||+|+|.||..+++.+.+. .+++++++.|. +.+..-.+. .| +.++.. .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~--~~ek~~~~~--~~-------------------~~~~~~-----s 52 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR--DEEKAKELE--AS-------------------VGRRCV-----S 52 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC--CHHHHHHHH--hh-------------------cCCCcc-----c
Confidence 4899999999999999988754 36999999996 444433322 11 111111 1
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCccccCCCCcEEEcCChhhHhHHHH
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPL 162 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~~~~~~~~IVSnaSCtTn~Lap~ 162 (227)
+.+++ -..+|+++||++..--++...+.+++|..-+|+|-..--+|=+.--. .+.......-|--||-..-+|- .
T Consensus 53 ~ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl-~~lak~~~~rv~~pSGAiGGlD-~ 127 (255)
T COG1712 53 DIDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERL-RELAKCGGARVYLPSGAIGGLD-A 127 (255)
T ss_pred cHHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHH-HHHHhcCCcEEEecCccchhHH-H
Confidence 11222 13789999999999889999999999998667776541122110000 0000001222333343333322 2
Q ss_pred HHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 163 AKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 163 lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
++.+. .-+|+++..||.-+...-|
T Consensus 128 l~aar-~g~i~~V~lttrKpp~~lg 151 (255)
T COG1712 128 LAAAR-VGGIEEVVLTTRKPPAELG 151 (255)
T ss_pred HHHhh-cCCeeEEEEEeecChHHhC
Confidence 22222 2489999999998887555
No 54
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.67 E-value=0.00011 Score=64.83 Aligned_cols=87 Identities=23% Similarity=0.351 Sum_probs=57.9
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~-GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
+||+|+|+ |++|+.+++.+.+.++++++++.|.. .+..... ..+ .+.+ ..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~--~~~~~~~-------~~~------------------~i~~--~~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP--GSPLVGQ-------GAL------------------GVAI--TD 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC--Ccccccc-------CCC------------------Cccc--cC
Confidence 69999996 99999999998887889999999872 2211000 000 0111 12
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
+.+++- .++|+|+|+|......+.+...+++|.. |++
T Consensus 53 dl~~ll---~~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 53 DLEAVL---ADADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CHHHhc---cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 232221 1578999888777778888888888864 554
No 55
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.66 E-value=0.00018 Score=54.93 Aligned_cols=94 Identities=28% Similarity=0.422 Sum_probs=66.0
Q ss_pred cEEEEEccChHHHHHHHHHHcC-CCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~-~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
+||||+|+|.+|+.+++.+.+. +++++++|.|+ +++...... .. |. .. .+ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~~~~~---~~---~~-~~-~~------------------~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERAEAFA---EK---YG-IP-VY------------------T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHHH---HH---TT-SE-EE------------------S
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHHHHHH---HH---hc-cc-ch------------------h
Confidence 5999999999999999998876 78999999998 444332211 10 11 01 11 1
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps 127 (227)
+.+++ ..+.++|+|+-||+.....+.+...+++|. .|++.-|-
T Consensus 53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 12222 112378999999999999999999999997 57777763
No 56
>PRK11579 putative oxidoreductase; Provisional
Probab=97.64 E-value=0.00026 Score=64.48 Aligned_cols=94 Identities=28% Similarity=0.475 Sum_probs=65.0
Q ss_pred CC-ccEEEEEccChHHH-HHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEE
Q 027137 1 MG-KVKIGINGFGRIGR-LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (227)
Q Consensus 1 m~-~~kVgI~G~GrIGr-~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v 78 (227)
|+ ++||||+|+|.||+ .+++++...+++++++|.|+ +.+... + +|. + +++
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~-----~----~~~--------~---------~~~ 52 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVK-----A----DWP--------T---------VTV 52 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHH-----h----hCC--------C---------Cce
Confidence 53 58999999999998 46787777778999999997 443321 0 111 0 001
Q ss_pred EeecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 79 ~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
+ .+.+++- .+.++|+|+-||+.....+.+...+++| |-|++--|
T Consensus 53 ~--~~~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (346)
T PRK11579 53 V--SEPQHLF-NDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKP 96 (346)
T ss_pred e--CCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCC
Confidence 1 1222221 1237899999999999999999999999 45777666
No 57
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.63 E-value=1.8e-05 Score=62.24 Aligned_cols=92 Identities=32% Similarity=0.367 Sum_probs=56.2
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~-GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
|||+|+|+ ||+|+.+++.+.+.++++++++.|...+ ++ .|+-- +++- + .....+.++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~-~~----------~g~d~-g~~~---~----~~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS-AK----------VGKDV-GELA---G----IGPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS-TT----------TTSBC-HHHC---T----SST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc-cc----------ccchh-hhhh---C----cCCcccccc--h
Confidence 59999997 9999999999999889999999887321 11 11100 1100 0 001112221 2
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
+.+++. ..+|++||.|-.....+..+..++.|.+
T Consensus 60 ~l~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~~ 93 (124)
T PF01113_consen 60 DLEELL---EEADVVIDFTNPDAVYDNLEYALKHGVP 93 (124)
T ss_dssp -HHHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-E
T ss_pred hHHHhc---ccCCEEEEcCChHHhHHHHHHHHhCCCC
Confidence 333332 1389999999777777788888888875
No 58
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.60 E-value=0.00023 Score=63.05 Aligned_cols=90 Identities=27% Similarity=0.377 Sum_probs=61.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~-~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
+||||+|+|+||+.+++.+.+.+ +++++++.|+ +.+....+.+ ++ + . .++ .
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~a~------~~---------~------~---~~~--~ 53 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENLAS------KT---------G------A---KAC--L 53 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHHHH------hc---------C------C---eeE--C
Confidence 59999999999999999988764 7999999997 4433322211 00 1 0 111 2
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeC
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisa 125 (227)
+.+++. .++|+|++|++...-.+.+...+++|.. |++..
T Consensus 54 ~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~s 92 (265)
T PRK13304 54 SIDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VIIMS 92 (265)
T ss_pred CHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEEEc
Confidence 334443 2689999999988888888888888864 55533
No 59
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.29 E-value=0.0012 Score=59.18 Aligned_cols=97 Identities=25% Similarity=0.311 Sum_probs=65.5
Q ss_pred CCccEEEEEccChHHH-HHHHHHHcCCC-ceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEE
Q 027137 1 MGKVKIGINGFGRIGR-LVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr-~~~r~l~~~~~-~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v 78 (227)
|+++||||+|+|.++. .++..+.+.++ ++++++.|+ +++....+ ...+| .. ..
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~~~---a~~~~----~~----------------~~ 55 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAEAF---AEEFG----IA----------------KA 55 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHHHH---HHHcC----CC----------------cc
Confidence 6789999999997765 58888887776 799999998 45443222 11111 00 00
Q ss_pred EeecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 79 ~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
+ .+.+++- .+.++|+|+=||+.....+.+...+++|. -|++--|
T Consensus 56 ~--~~~~~ll-~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 56 Y--TDLEELL-ADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred c--CCHHHHh-cCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 0 1111111 11258999999999999999999999995 5777666
No 60
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0018 Score=57.58 Aligned_cols=96 Identities=27% Similarity=0.314 Sum_probs=61.3
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
++||+|+| .||+||.+++++.+.+++++++.-|...+ ...|+-. +++- + ++-..+.++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~-----------~~~g~d~-ge~~---g----~~~~gv~v~-- 60 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS-----------LSLGSDA-GELA---G----LGLLGVPVT-- 60 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc-----------cccccch-hhhc---c----ccccCceee--
Confidence 48999999 69999999999999999999988775211 1112111 1110 0 111112221
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEE
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVI 122 (227)
.++. -.+.+.|++||=|-...+.+.++..++.|.+-||
T Consensus 61 ~~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVI 98 (266)
T COG0289 61 DDLL---LVKADADVLIDFTTPEATLENLEFALEHGKPLVI 98 (266)
T ss_pred cchh---hcccCCCEEEECCCchhhHHHHHHHHHcCCCeEE
Confidence 2211 2234789999988888888888888888865433
No 61
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.23 E-value=0.00044 Score=63.40 Aligned_cols=106 Identities=26% Similarity=0.355 Sum_probs=58.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC---------CceEEEEeCCCcCh---hh--hhhhhcccccccCCCCcceEEeCCCe
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITT---DY--MTYMFKYDSVHGQWKHHELKVKDDKT 68 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~---------~~~ivaInd~~~~~---~~--~ayllkyDS~~Gkf~~~~v~~~~~~~ 68 (227)
++||+|.|||.+|+.+++.+.++. ++++++|.|..... +- +..+++|-...|+.. .
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~----------~ 71 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS----------N 71 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh----------h
Confidence 599999999999999999886521 38899998852111 00 001111111000000 0
Q ss_pred EEECCEEEEEEeecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeC
Q 027137 69 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (227)
Q Consensus 69 l~i~gk~I~v~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisa 125 (227)
+.-+ ... ...+++++ +.+..+|+|||+|+.....+.....++.|.. |+++
T Consensus 72 ~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~~--VVta 121 (336)
T PRK08374 72 WGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGKS--VVTS 121 (336)
T ss_pred cccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCCc--EEEC
Confidence 0000 000 00012222 2335799999999887777777888888873 4444
No 62
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.07 E-value=0.001 Score=61.41 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=28.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC---------CceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~---------~~~ivaInd~ 36 (227)
+++|+|+|||.||+.+++.+.++. +++|++|.+.
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 589999999999999999986431 4788899875
No 63
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.05 E-value=0.0012 Score=60.54 Aligned_cols=33 Identities=36% Similarity=0.702 Sum_probs=28.5
Q ss_pred cEEEEEccChHHHHHHHHHHcC-------CCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQR-------DDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~-------~~~~ivaInd~ 36 (227)
+||+|+|||.||+.+++.+.++ .++++|+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 3899999999999999998764 35899999886
No 64
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0023 Score=58.75 Aligned_cols=36 Identities=33% Similarity=0.674 Sum_probs=30.8
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC---------CceEEEEeCC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~---------~~~ivaInd~ 36 (227)
||++||+|.|||.+|+.+++.+.+++ ++++++|.+.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 78899999999999999999987542 4788888876
No 65
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.95 E-value=0.0038 Score=54.04 Aligned_cols=135 Identities=24% Similarity=0.392 Sum_probs=83.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC-CceEEEEe--CCCcChhhhhhhhc--ccccccCCCCcceEEeCCCeEEECCEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVN--DPFITTDYMTYMFK--YDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~-~~~ivaIn--d~~~~~~~~ayllk--yDS~~Gkf~~~~v~~~~~~~l~i~gk~I~ 77 (227)
+.||+|+|.|.||.-++.-++.++ .+|.-.+. || ..+-++...+ ..+|| +| + . .
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp--~sdglaraarlgv~tt~-----------eg--v--~----~ 62 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDP--QSDGLARAARLGVATTH-----------EG--V--I----G 62 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcCCcccceeEEccCC--CccHHHHHHhcCCcchh-----------hH--H--H----H
Confidence 789999999999996665555442 34433222 34 2333332221 12221 11 0 0 1
Q ss_pred EEeecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeC-CCCCCCeEEeccCccc-cCC-CCcEEEcCCh
Q 027137 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA-PSKDAPMFVVGVNENE-YKP-ELNIVSNASC 154 (227)
Q Consensus 78 v~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisa-ps~d~p~~V~gVN~~~-~~~-~~~IVSnaSC 154 (227)
++ +-|+ + .++|+|||+|..+...+.+++..++|.+ .|+- |..-.|-+||-+|-+. .+. .-+.| .|
T Consensus 63 ll--~~p~-~----~di~lvfdatsa~~h~~~a~~~ae~gi~--~idltpaaigp~vvp~~n~~eh~~a~nvnmv---tc 130 (310)
T COG4569 63 LL--NMPE-F----ADIDLVFDATSAGAHVKNAAALAEAGIR--LIDLTPAAIGPYVVPVVNLEEHVDALNVNMV---TC 130 (310)
T ss_pred HH--hCCC-C----CCcceEEeccccchhhcchHhHHhcCCc--eeecchhccCCeeccccchHHhcCCCCcceE---ee
Confidence 11 1132 2 2789999999999999999999999995 4543 4444799999999874 442 34556 56
Q ss_pred hhHhHHHHHHHHhhhc
Q 027137 155 TTNCLAPLAKVIHDKF 170 (227)
Q Consensus 155 tTn~Lap~lk~L~~~f 170 (227)
-..+-.|++....+..
T Consensus 131 ggqatipiv~avsrvv 146 (310)
T COG4569 131 GGQATIPIVAAVSRVV 146 (310)
T ss_pred cCcccchhhhhhhhhe
Confidence 6667777777766543
No 66
>PRK10206 putative oxidoreductase; Provisional
Probab=96.93 E-value=0.0026 Score=58.23 Aligned_cols=93 Identities=17% Similarity=0.261 Sum_probs=60.9
Q ss_pred cEEEEEccChHHH-HHHHHHHc-CCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 4 VKIGINGFGRIGR-LVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 4 ~kVgI~G~GrIGr-~~~r~l~~-~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
+||||+|+|++++ .+++.+.. .++++++||.|+. .+.....-+|.- + +++
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~--~~~~~~~~~~~~---------~---------------~~~-- 53 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRH--AKPEEQAPIYSH---------I---------------HFT-- 53 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCC--hhHHHHHHhcCC---------C---------------ccc--
Confidence 7999999999875 56776654 4579999999973 322111111110 0 010
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
.+.+++ ..+.++|.|+-||+.....+.+...+++| |-|++--|
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKP 96 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecC
Confidence 112221 11237899999999999999999999999 45777666
No 67
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.73 E-value=0.0012 Score=50.82 Aligned_cols=84 Identities=27% Similarity=0.377 Sum_probs=49.6
Q ss_pred ccChHHHHHHHHHHcCC---CceEEEEeCCC--cChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecCC
Q 027137 10 GFGRIGRLVARVILQRD---DVELVAVNDPF--ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (227)
Q Consensus 10 G~GrIGr~~~r~l~~~~---~~~ivaInd~~--~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~p 84 (227)
|+|.||+.+++.+.+.+ ++++++|.+.. .+.+.... . . +. ... .++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-----~--------~~-~~~----------~~~ 51 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----F-----P--------DE-AFT----------TDL 51 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----H-----T--------HS-CEE----------SSH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----c-----c--------cc-ccc----------CCH
Confidence 89999999999998765 79999999873 00110000 0 0 00 000 111
Q ss_pred CC-CCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 85 EE-IPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 85 ~~-i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
++ +.| .++|+|||||+.....+.....+++|. -||+++
T Consensus 52 ~~~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~n 90 (117)
T PF03447_consen 52 EELIDD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTAN 90 (117)
T ss_dssp HHHHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES-
T ss_pred HHHhcC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEEC
Confidence 11 111 168999999999888888889999997 455543
No 68
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.53 E-value=0.0078 Score=56.35 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=65.9
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhhhc-ccccccCCCCcceEEeCCC---eE--EECCEE
Q 027137 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TL--LFGEKP 75 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~-~~~ivaInd~~~~~~~~ayllk-yDS~~Gkf~~~~v~~~~~~---~l--~i~gk~ 75 (227)
.||+|+| +|-||+..++.+.+.+ .|+++++..- .+.+.+..+.+ |.. .-+-..+++ .| .+.+..
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~-~n~~~l~~q~~~f~p-------~~v~i~~~~~~~~l~~~l~~~~ 73 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG-KNVELLAEQAREFRP-------KYVVVADEEAAKELKEALAAAG 73 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHHHHhCC-------CEEEEcCHHHHHHHHHhhccCC
Confidence 4899999 9999999999987655 6999999832 25555544332 221 111111110 00 011112
Q ss_pred EEEEeec-CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeC
Q 027137 76 VTVFGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (227)
Q Consensus 76 I~v~~~~-~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisa 125 (227)
++++... ...++- ...++|+|+.+.+.+...+..-..+++| |+|.+.+
T Consensus 74 ~~v~~G~~~~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaLAN 122 (385)
T PRK05447 74 IEVLAGEEGLCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIALAN 122 (385)
T ss_pred ceEEEChhHHHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEEeC
Confidence 3333322 122211 1126999999999998888888889999 4565533
No 69
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.53 E-value=0.0033 Score=58.19 Aligned_cols=92 Identities=21% Similarity=0.356 Sum_probs=56.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCC----CeEEECCEEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD----KTLLFGEKPVTV 78 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~----~~l~i~gk~I~v 78 (227)
++|||++|.|..|+-++-....-+++++|+|+|...+-...+ ||-..+.-. ..++..+- ..+. .| +|.+
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A----~~~ag~~~~-~~~e~~~~s~~a~Ai~-aG-Ki~v 89 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA----YDRAGGPKI-EAVEADDASKMADAIE-AG-KIAV 89 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH----HHHhcCCcc-cccccchhhHHHHHHh-cC-cEEE
Confidence 689999999999998888887888999999999865554444 454333211 11111000 0011 12 2333
Q ss_pred EeecCCCCCCCccCCccEEEeecCcc
Q 027137 79 FGVRNPEEIPWAETGAEYVVESTGVF 104 (227)
Q Consensus 79 ~~~~~p~~i~W~~~~vDiVve~tG~f 104 (227)
. .| .++-.....+|+|||+||.-
T Consensus 90 T--~D-~~~i~~~~~IdvIIdATG~p 112 (438)
T COG4091 90 T--DD-AELIIANDLIDVIIDATGVP 112 (438)
T ss_pred e--cc-hhhhhcCCcceEEEEcCCCc
Confidence 2 12 22334445899999999864
No 70
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.36 E-value=0.012 Score=53.14 Aligned_cols=92 Identities=23% Similarity=0.183 Sum_probs=56.5
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
.+||.|+| .|++|+.+.+++.+ +++++|+..|+..+.+.+ .+.+.|..+.++..
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~------------------------~~~~~g~~v~~~~~ 65 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGV------------------------TVEVCGVEVRLVGP 65 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccc------------------------cceeccceeeeecC
Confidence 58999999 89999999999988 889999988763111100 02233334455321
Q ss_pred cCCCCCC--CccCCcc-EEEeecCcccCHHhHHHHHhCCCC
Q 027137 82 RNPEEIP--WAETGAE-YVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 82 ~~p~~i~--W~~~~vD-iVve~tG~f~~~~~a~~hl~~Gak 119 (227)
.|.+... -.....| ++||=|-.....+.....++.|.+
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~ 106 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLP 106 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCC
Confidence 2222111 0011357 677777666666777777777775
No 71
>PLN02700 homoserine dehydrogenase family protein
Probab=96.36 E-value=0.007 Score=56.55 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=29.9
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC--------CceEEEEeCC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~--------~~~ivaInd~ 36 (227)
||+++|+|+|+|.||+.+++.+.++. ++.+++|.|.
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 88899999999999999999875332 3678899875
No 72
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.26 E-value=0.073 Score=46.26 Aligned_cols=34 Identities=32% Similarity=0.650 Sum_probs=30.6
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
+.+||+|.|||.+|+.+++.|.+. ++++++|.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 458999999999999999998876 5999999986
No 73
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.15 E-value=0.021 Score=54.53 Aligned_cols=100 Identities=16% Similarity=0.309 Sum_probs=62.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCC--------cChhhhhhhhcccccc-cCCCCcceEEeCCCeEEECC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGE 73 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~--------~~~~~~ayllkyDS~~-Gkf~~~~v~~~~~~~l~i~g 73 (227)
..||+|-|||.+|+.+++.|.+. +.+||+|.|.. .|++. |++|-..+ |... .+.+. .+.
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~~---L~~~k~~~~~~l~----~~~~~----~~~ 299 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLEK---LKEIKEVRRGRIS----EYAEE----FGA 299 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHH---HHHHHHhcCCchh----hhhhh----cCC
Confidence 47999999999999999999876 59999999832 13332 23332111 1111 00000 000
Q ss_pred EEEEEEeecCCCCCCCccCCccEEEeec-CcccCHHhHHHHHhCCCCEEEE
Q 027137 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 74 k~I~v~~~~~p~~i~W~~~~vDiVve~t-G~f~~~~~a~~hl~~GakkVIi 123 (227)
+. -++++ .|. .++|+.+.|+ +..++.+.+..+.+.+|| +|+
T Consensus 300 ~~------i~~~~-i~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 300 EY------LEGGS-PWS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred ee------cCCcc-ccc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 11 12333 253 5899999999 777788889888877885 555
No 74
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.12 E-value=0.086 Score=45.53 Aligned_cols=35 Identities=23% Similarity=0.492 Sum_probs=31.0
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCC
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~ 37 (227)
+..||+|.|||.+|+.+++.|.+. +..+|+|.|..
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~~ 56 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDPD 56 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence 357999999999999999999887 58999999974
No 75
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.69 E-value=0.03 Score=47.82 Aligned_cols=95 Identities=21% Similarity=0.324 Sum_probs=59.7
Q ss_pred ccEEEEEccChHHHHHHHHH-HcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGINGFGRIGRLVARVI-LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l-~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
+.||+|+|+|.+|+.+++.+ ....+++++++.|. +++.. |+ .++|.++. .-
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~----------~~--------------~i~g~~v~--~~ 135 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKI----------GT--------------KIGGIPVY--HI 135 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhhc----------CC--------------EeCCeEEc--CH
Confidence 46899999999999988864 33457999999886 22211 10 01232221 11
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
.+.+++ ..+.++|.|+.|++.....+-...-+++|.+.++...|
T Consensus 136 ~~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 136 DELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 222222 12347999999999876666667777889875544344
No 76
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.51 E-value=0.03 Score=47.81 Aligned_cols=95 Identities=21% Similarity=0.344 Sum_probs=63.9
Q ss_pred ccEEEEEccChHHHHHHHHHH-cCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~-~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
+.++.|+|.|.+||.++.--+ ++.+++|+++=|. +++. -|+.- .+ +.|..-
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~~----------VG~~~--------------~~--v~V~~~ 135 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPDK----------VGTKI--------------GD--VPVYDL 135 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHHH----------hCccc--------------CC--eeeech
Confidence 479999999999998876554 3557999999886 4432 24333 11 222221
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
.+.+++ -.+.++|+++-|.++...-+-+..-.++|.|.++=-+|
T Consensus 136 d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 136 DDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred HHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccc
Confidence 222222 12348999999999988888888999999986443444
No 77
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.057 Score=46.70 Aligned_cols=99 Identities=26% Similarity=0.283 Sum_probs=58.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhc--ccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK--YDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllk--yDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
+++.|+|.|++|+.+++.|.+.+ -+++.|.+ +.+....-++ +|. ..+..++....++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~---d~~~~~~~~~~~~~~---------------~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDR---DEERVEEFLADELDT---------------HVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEc---CHHHHHHHhhhhcce---------------EEEEecCCCHHHHHh
Confidence 48999999999999999998874 67777765 3333322111 111 012222222222222
Q ss_pred cCCCCCCCccCCccEEEeecCcccCH-HhHHHHHh-CCCCEEEEeCCCC
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDK-DKAAAHLK-GGAKKVIISAPSK 128 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~-~~a~~hl~-~GakkVIisaps~ 128 (227)
-.. .++|+++-+||..... -.+..+.+ -|.+++|..+.++
T Consensus 62 agi-------~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 62 AGI-------DDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred cCC-------CcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 111 2679999999985443 33444444 5899888766653
No 78
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.25 E-value=0.049 Score=48.05 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=57.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC----------CceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEEC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD----------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG 72 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~----------~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~ 72 (227)
..||.|+|.|-+|-.+++.|...+ +++++-+.....+...+...+=+++.-|+.+ .++-.+ .--.++
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~K-a~v~~~--ri~~~~ 87 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNK-AIVLVN--RLNQAM 87 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHH-HHHHHH--HHHhcc
Confidence 579999999999999999987542 2355444322233333332222344456654 332211 000122
Q ss_pred CEEEEEEeec-CCCCCCCccCCccEEEeecCcccCHHhHHHHH
Q 027137 73 EKPVTVFGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAAAHL 114 (227)
Q Consensus 73 gk~I~v~~~~-~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl 114 (227)
+..+....++ +++++ + .+.|+|++|+..+.++......+
T Consensus 88 ~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 88 GTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred CceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 3233332221 22222 2 37899999999988875554443
No 79
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.03 E-value=0.16 Score=45.15 Aligned_cols=106 Identities=15% Similarity=0.259 Sum_probs=65.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCC--------cChhhhhhhhcccccccC-CCCcceEEeCCCeEEECC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVHGQ-WKHHELKVKDDKTLLFGE 73 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~--------~~~~~~ayllkyDS~~Gk-f~~~~v~~~~~~~l~i~g 73 (227)
..||+|-|||.+|+..++.|.+. +.++|+|+|.. .|++.+..+++++..++. .. .+. ..+.+
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~----~~~----~~~~~ 108 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLEL-GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVS----EYA----KKYGT 108 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHH----HHh----hcCCC
Confidence 36999999999999999999876 59999998842 244444444444432221 00 000 00111
Q ss_pred EEEEEEeecCCCCCCCccCCccEEEeec-CcccCHHhHHHHHhCCCCEEEEeC
Q 027137 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIISA 125 (227)
Q Consensus 74 k~I~v~~~~~p~~i~W~~~~vDiVve~t-G~f~~~~~a~~hl~~GakkVIisa 125 (227)
.+. -+++++ |. .++|+.+=|. +.-++.+.++.-.+.+|| +|+-+
T Consensus 109 --a~~---~~~~~~-~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~Eg 153 (254)
T cd05313 109 --AKY---FEGKKP-WE-VPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVAEG 153 (254)
T ss_pred --CEE---eCCcch-hc-CCCcEEEeccccccCCHHHHHHHHHcCCE-EEEeC
Confidence 011 123433 53 5799998887 777888888876666775 55543
No 80
>PLN02477 glutamate dehydrogenase
Probab=94.98 E-value=0.32 Score=46.04 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=30.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~ 37 (227)
..+|+|-|||.+|+.+++.|.+. +..||||.|..
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~-GakVVaVsD~~ 239 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEK-GGKIVAVSDIT 239 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 36899999999999999988876 59999999973
No 81
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.93 E-value=0.077 Score=55.54 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=63.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCce------------EEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVE------------LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLL 70 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~------------ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~ 70 (227)
+.||+|+|.|+||+.+++.+.+.++++ +|+|.|+ +++....+.+- ++ .+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~~------~~--~~--------- 629 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKETVEG------IE--NA--------- 629 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHHHHHh------cC--CC---------
Confidence 358999999999999999998777666 7899997 44443332210 11 00
Q ss_pred ECCEEEEEEeecCCCCCC-CccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 71 FGEKPVTVFGVRNPEEIP-WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 71 i~gk~I~v~~~~~p~~i~-W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
+.+.+ .-.|++++. +- .++|+|+-|++.+...+-+...+++|+- +++..
T Consensus 630 ---~~v~l-Dv~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkH--vv~ek 679 (1042)
T PLN02819 630 ---EAVQL-DVSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKH--LVTAS 679 (1042)
T ss_pred ---ceEEe-ecCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCC--EEECc
Confidence 01111 002222221 10 2699999999999999999999999873 45443
No 82
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.91 E-value=0.045 Score=40.91 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=59.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEE-ee
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF-GV 81 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~-~~ 81 (227)
+.|+.|+|.|+.|+.++...++..+++++++-|. +++.. | -.++|- .++ .-
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~~~----------------------G--~~i~gi--pV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPEKI----------------------G--KEIGGI--PVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTTTT----------------------T--SEETTE--EEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCCcc----------------------C--cEECCE--EeeccH
Confidence 4689999999999988766665557898888775 22111 1 123443 333 11
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
++..+.- ++|+.+-|.+.....+.+...+++|.|.++.-+|
T Consensus 55 ~~l~~~~----~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEEFI----EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHHHC----TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhhhh----CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1111111 3899999999888888888999999998765443
No 83
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.74 E-value=0.17 Score=47.60 Aligned_cols=98 Identities=19% Similarity=0.284 Sum_probs=60.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+||-|+|.|.||+.+++.+..+.+.+|... |. +.+..+... ++..++. + .+.++- .+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iA-dR--s~~~~~~i~--~~~~~~v-----~-----~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIA-DR--SKEKCARIA--ELIGGKV-----E-----ALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEE-eC--CHHHHHHHH--hhccccc-----e-----eEEecc--------cC
Confidence 599999999999999999987776775544 43 334433332 3322221 1 122221 11
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
.+.+.=--.+.|+||.|.+.|.+..-.+..+++|.. +++.+
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~--yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVD--YVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCC--EEEcc
Confidence 110000001459999999999999988899999985 44443
No 84
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.64 E-value=0.13 Score=47.40 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=56.6
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~-~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
++||||+|. .+|+.+++++.+.+ +++++||.|. +.+...-+- ..+|- ..+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~--~~erA~~~A---~~~gi---------------------~~y-- 53 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQ--GSERSRALA---HRLGV---------------------PLY-- 53 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcC--CHHHHHHHH---HHhCC---------------------Ccc--
Confidence 589999999 68999999998877 7999999997 444332221 11110 000
Q ss_pred cCCCCCCCccCCccEEEee--cCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 82 RNPEEIPWAETGAEYVVES--TGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~--tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
.+.+++. .+.++|.|.=. +......+.+...+++|. .|++--|
T Consensus 54 ~~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~EKP 98 (343)
T TIGR01761 54 CEVEELP-DDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQEHP 98 (343)
T ss_pred CCHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEEcCC
Confidence 1222222 11134444432 233566788888999994 5777666
No 85
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.58 E-value=0.24 Score=47.45 Aligned_cols=103 Identities=16% Similarity=0.341 Sum_probs=65.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCC--------cChhhhhhhhcccccc-cCCCCcceEEeCCCeEEECCE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGEK 74 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~--------~~~~~~ayllkyDS~~-Gkf~~~~v~~~~~~~l~i~gk 74 (227)
.+|+|-|||.+|...++.|.+. +.++|+|+|.. .|++.+.+++++-..+ |+.. .+.+. ..|
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~----~~~~~----~~~- 307 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK----EYAKH----SST- 307 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH----hhhhc----cCC-
Confidence 6899999999999999999876 59999999974 2355555555443211 2111 00000 001
Q ss_pred EEEEEeecCCCCCCCccCCccEEEeec-CcccCHHhHHHHHhCCCCEEEE
Q 027137 75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 75 ~I~v~~~~~p~~i~W~~~~vDiVve~t-G~f~~~~~a~~hl~~GakkVIi 123 (227)
.+.. ++++ +|. .++|+.+=|+ +-.++.+.+..-++.||| +|+
T Consensus 308 -a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~ 350 (454)
T PTZ00079 308 -AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVA 350 (454)
T ss_pred -cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEE
Confidence 0111 1222 375 6899999876 777888888877788996 455
No 86
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=94.57 E-value=0.099 Score=46.92 Aligned_cols=88 Identities=22% Similarity=0.203 Sum_probs=52.9
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEE-eCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaI-nd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
+||.||| .|++|+.+.+++.+ +++++|+. -|+...- .+...+.|..+.+...
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~-------------------------~~~~~~~g~~v~v~~~ 54 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEA-------------------------ENEAEVAGKEILLHGP 54 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccc-------------------------cchhhhcccceeeecc
Confidence 4899999 89999999999887 78999986 3321000 0011122323444211
Q ss_pred ----cCCCCCCCccCCcc-EEEeecCcccCHHhHHHHHhCCCC
Q 027137 82 ----RNPEEIPWAETGAE-YVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 82 ----~~p~~i~W~~~~vD-iVve~tG~f~~~~~a~~hl~~Gak 119 (227)
.+++.+. +...| ++||=|-.....+.+...++.|.+
T Consensus 55 ~~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~ 95 (275)
T TIGR02130 55 SEREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIP 95 (275)
T ss_pred ccccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCC
Confidence 1222221 11256 788877666677777777777875
No 87
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.41 E-value=0.31 Score=46.59 Aligned_cols=105 Identities=16% Similarity=0.292 Sum_probs=66.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCC--------cChhhhhhhhcccccccCCCCcceEEeCCCeEEECCE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK 74 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~--------~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk 74 (227)
..+|+|-|||.+|...++.|.+. +..+|+|+|.. .|++.+.+|++|-..+|... .. +.+ .+.|-
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~-~~--~~~----~~~ga 299 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIV-AP--YAE----KFPGS 299 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccH-HH--HHh----cCCCC
Confidence 36899999999999999998876 59999976542 34555666776644332110 00 000 11121
Q ss_pred EEEEEeecCCCCCCCccCCccEEEeec-CcccCHHhHHHHHhCCCCEEEE
Q 027137 75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 75 ~I~v~~~~~p~~i~W~~~~vDiVve~t-G~f~~~~~a~~hl~~GakkVIi 123 (227)
+. -++++ .|. .++|+.+=|+ +-.++.+.+..-.+.+|| .|+
T Consensus 300 --~~---i~~~~-~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~ 341 (445)
T PRK14030 300 --TF---FAGKK-PWE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVA 341 (445)
T ss_pred --EE---cCCcc-cee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence 11 12333 264 6799998877 778888888887777886 455
No 88
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.25 E-value=0.075 Score=44.02 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=26.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+|||+|+|+||+.+++.+... ++++.+.+-.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~ 68 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRS 68 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT-T-EEEEEESS
T ss_pred CEEEEEEEcCCcCeEeeeeecC-CceeEEeccc
Confidence 5899999999999999999866 4888877653
No 89
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.25 E-value=0.28 Score=41.62 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=26.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
..+|+|.|||++|+.+++.|.+.+ .+++ +.|.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADI 59 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence 368999999999999999998774 7888 5565
No 90
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=94.16 E-value=0.047 Score=55.76 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=28.6
Q ss_pred CccEEEEEccChHHHHHHHHHHcCC---------CceEEEEeCC
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDP 36 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~---------~~~ivaInd~ 36 (227)
++++|+|.|||.||+.+++.+.++. ++++++|.+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 4689999999999999999886431 4788999765
No 91
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.99 E-value=0.055 Score=55.29 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=28.4
Q ss_pred CccEEEEEccChHHHHHHHHHHcCC--------CceEEEEeCC
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~--------~~~ivaInd~ 36 (227)
++++|+|.|||.||+.+++.+.++. ++++++|.+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 3689999999999999999986432 4778888764
No 92
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.91 E-value=0.48 Score=42.31 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=77.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcc-----c--ccccCCCCcceEEeCCCeEEECCEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY-----D--SVHGQWKHHELKVKDDKTLLFGEKPV 76 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllky-----D--S~~Gkf~~~~v~~~~~~~l~i~gk~I 76 (227)
-||||+|.|.+|+.++..+... +++++.. |. +++.+....++ | -..|... .. .. .. . .+ .+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~-d~--~~~~~~~~~~~i~~~~~~~~~~g~~~-~~-~~--~~-~-~~--~l 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVF-ET--TEELATAGRNRIEKSLERAVSRGKLT-ER-ER--DA-A-LA--RL 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEE-EC--CHHHHHHHHHHHHHHHHHHHhcccCC-hh-hH--HH-H-Hh--Ce
Confidence 4899999999999999888766 4775554 33 34443321110 1 0122221 00 00 00 0 01 23
Q ss_pred EEEeecCCCCCCCccCCccEEEeecCcccCHHhH-----HHHH-hCCCCEEEEeCCCC----------CCCeE---Eecc
Q 027137 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKA-----AAHL-KGGAKKVIISAPSK----------DAPMF---VVGV 137 (227)
Q Consensus 77 ~v~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a-----~~hl-~~GakkVIisaps~----------d~p~~---V~gV 137 (227)
++ ..+++.+ .++|+|+||.......+.. ..+. ..++ ++.|+.|. ..|-- +--.
T Consensus 74 ~~--~~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~ 145 (286)
T PRK07819 74 RF--TTDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFF 145 (286)
T ss_pred Ee--eCCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecC
Confidence 32 2344433 3899999998766554332 2333 3344 77777652 12311 1223
Q ss_pred CccccCCCCcEEEcCChhhHhHHHHHHHHhhhcCe
Q 027137 138 NENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 172 (227)
Q Consensus 138 N~~~~~~~~~IVSnaSCtTn~Lap~lk~L~~~fgI 172 (227)
|+-.+.+--.|+..+.+.-..++.+...+.+..|-
T Consensus 146 ~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk 180 (286)
T PRK07819 146 NPVPVLPLVELVPTLVTSEATVARAEEFASDVLGK 180 (286)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 32222222357777777777777666666655553
No 93
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.66 E-value=0.17 Score=46.09 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=25.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
+.||+|+|.|.+|..++..+...+-.+ +.+-|.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 468999999999999888776554236 566665
No 94
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.59 E-value=0.22 Score=45.96 Aligned_cols=97 Identities=26% Similarity=0.392 Sum_probs=61.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC--CceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEe
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~--~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~ 80 (227)
.+|+||.|.|+|++.+++++...| +.+|+||.|+ +.+... .+...|+ +. + .+++.
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~--s~~~A~---~fAq~~~--------------~~-~---~k~y~ 62 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP--SLERAK---EFAQRHN--------------IP-N---PKAYG 62 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc--cHHHHH---HHHHhcC--------------CC-C---Ccccc
Confidence 589999999999999999998666 7999999998 333321 1222111 10 0 01111
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
. -+++- ++..+|+|.-++..-...|.+-..+..| |.|++--|
T Consensus 63 s--yEeLa-kd~~vDvVyi~~~~~qH~evv~l~l~~~-K~VL~EKP 104 (351)
T KOG2741|consen 63 S--YEELA-KDPEVDVVYISTPNPQHYEVVMLALNKG-KHVLCEKP 104 (351)
T ss_pred C--HHHHh-cCCCcCEEEeCCCCccHHHHHHHHHHcC-CcEEeccc
Confidence 0 11110 1236888888888777778877777776 44777655
No 95
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.55 E-value=0.12 Score=41.98 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=23.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.|||++|+|.+|+.+++.|.+.+ +++..-+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g-~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG-YEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT-TEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcC-CeEEeec
Confidence 59999999999999999998774 8876554
No 96
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.51 E-value=0.36 Score=43.90 Aligned_cols=34 Identities=38% Similarity=0.510 Sum_probs=25.0
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
+..||+|+|.|.+|..++..+...+-.+ +.+-|.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 4579999999999999888776554235 444454
No 97
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.49 E-value=0.54 Score=42.37 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
|| +||+|+|.|.+|..++..+.+.+ .++..++.
T Consensus 1 ~~-mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r 33 (341)
T PRK08229 1 MM-ARICVLGAGSIGCYLGGRLAAAG-ADVTLIGR 33 (341)
T ss_pred CC-ceEEEECCCHHHHHHHHHHHhcC-CcEEEEec
Confidence 54 79999999999999999988764 66665543
No 98
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=93.40 E-value=0.49 Score=36.68 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=54.1
Q ss_pred EEEEEc----cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEe
Q 027137 5 KIGING----FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (227)
Q Consensus 5 kVgI~G----~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~ 80 (227)
+|+|+| -+..|+.+++.+.+. ++++..||-. ++. +.|.+ ++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~------------~~~-------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPK------------GGE-------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTT------------CSE-------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCC------------ceE-------------------ECcEE--ee-
Confidence 699999 589999999999885 5899999743 122 12211 11
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
.+.+++| ..+|+++-++......+..+...+.|++.+++...
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1122222 37899999999988888888888889999888654
No 99
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=93.25 E-value=0.95 Score=43.41 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=65.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhhhc-ccccccCCCCcceEEeCCC---eEE--ECCE-
Q 027137 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TLL--FGEK- 74 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~-~~~ivaInd~~~~~~~~ayllk-yDS~~Gkf~~~~v~~~~~~---~l~--i~gk- 74 (227)
.||+|.| +|-||...++.+.+.+ +|+++++..- .+.+.++...+ |.. .-+...+.. .+. +.+.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag-~Ni~lL~~q~~~f~p-------~~v~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG-SNVTLLADQVRKFKP-------KLVAVRNESLVDELKEALADLD 129 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC-CCHHHHHHHHHHhCC-------CEEEEcCHHHHHHHHHhhcCCC
Confidence 5999999 7999999999887665 5999999764 36665554322 221 111111110 000 0110
Q ss_pred -EEEEEe-ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeC
Q 027137 75 -PVTVFG-VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (227)
Q Consensus 75 -~I~v~~-~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisa 125 (227)
.+.++. +.+..++- ...++|+|+.+.+.+...+..-..+++| |+|.+.+
T Consensus 130 ~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALAN 180 (454)
T PLN02696 130 DKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 180 (454)
T ss_pred CCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEec
Confidence 123332 11121111 1126899999998887877777888999 5566644
No 100
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.16 E-value=0.16 Score=43.08 Aligned_cols=95 Identities=24% Similarity=0.265 Sum_probs=53.8
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecCC
Q 027137 6 IGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (227)
Q Consensus 6 VgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~p 84 (227)
|.|.| +|.+|+.++++|.+ +++++.++.... ....+.-|+.. | .++ + .++ ..++
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~--~~~~~~~l~~~---g----~~v-v-~~d-------------~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDP--SSDRAQQLQAL---G----AEV-V-EAD-------------YDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSS--HHHHHHHHHHT---T----TEE-E-ES--------------TT-H
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEecc--chhhhhhhhcc---c----ceE-e-ecc-------------cCCH
Confidence 68999 89999999999998 569999987642 11121112111 1 010 0 010 0123
Q ss_pred CCCCCccCCccEEEeecCcccC------HHhHHHHHhCCCCEEEEeC
Q 027137 85 EEIPWAETGAEYVVESTGVFTD------KDKAAAHLKGGAKKVIISA 125 (227)
Q Consensus 85 ~~i~W~~~~vDiVve~tG~f~~------~~~a~~hl~~GakkVIisa 125 (227)
+.+.=.-.|+|.||.+++.... ..-.....++|+|++|.|.
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 3322112389999999996522 2333455578999988643
No 101
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.15 E-value=0.13 Score=40.81 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=27.5
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhh
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYM 46 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~-~~~~~~~ayl 46 (227)
||.|+|.|.+|..+++.|...+ +.=+.+-|. ..+++.+..-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~d~v~~~nl~r~ 42 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDFDTVELSNLNRQ 42 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcCCCcCcchhhcc
Confidence 6899999999999999998765 433334443 2344444433
No 102
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.12 E-value=0.19 Score=46.32 Aligned_cols=97 Identities=24% Similarity=0.401 Sum_probs=55.2
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecCCC
Q 027137 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPE 85 (227)
Q Consensus 6 VgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~p~ 85 (227)
|.|+|.|.+|+.+++.|.+++.++-+.+.|. +.+.+..+.+. ..+ ..+++ ..+ ...|++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r--~~~~~~~~~~~--~~~----~~~~~-----~~~--------d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR--NPEKAERLAEK--LLG----DRVEA-----VQV--------DVNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEES--SHHHHHHHHT----TT----TTEEE-----EE----------TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC--CHHHHHHHHhh--ccc----cceeE-----EEE--------ecCCHH
Confidence 6899999999999999998877744556665 45554443311 000 11111 111 112222
Q ss_pred CCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeC
Q 027137 86 EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (227)
Q Consensus 86 ~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisa 125 (227)
.+.=--.+.|+||.|.|.|....-++..+++|+ -.++.
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD~ 97 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVDT 97 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEES
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceecc
Confidence 211111267999999999988888888999998 45663
No 103
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.07 E-value=0.25 Score=36.11 Aligned_cols=40 Identities=30% Similarity=0.477 Sum_probs=30.3
Q ss_pred EEEEEccChHHHHHHHHHHcCC--CceEEEEeCCCcChhhhhhh
Q 027137 5 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYM 46 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~--~~~ivaInd~~~~~~~~ayl 46 (227)
||||+|+|.+|..+++.+.+.+ .-++.-+++. +++...++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~ 42 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAEL 42 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHH
Confidence 7999999999999999998764 2566656555 56666554
No 104
>PRK08507 prephenate dehydrogenase; Validated
Probab=92.91 E-value=0.46 Score=41.85 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=23.3
Q ss_pred EEEEEccChHHHHHHHHHHcCCC-ceEEEE
Q 027137 5 KIGINGFGRIGRLVARVILQRDD-VELVAV 33 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~-~~ivaI 33 (227)
||+|+|+|.+|..+++.+.+.+. .++.++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~ 31 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGY 31 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEE
Confidence 89999999999999999986642 355554
No 105
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.81 E-value=0.57 Score=44.82 Aligned_cols=104 Identities=14% Similarity=0.312 Sum_probs=63.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCC--------cChhhhhhhhccccc-ccCCCCcceEEeCCCeEEECC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSV-HGQWKHHELKVKDDKTLLFGE 73 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~--------~~~~~~ayllkyDS~-~Gkf~~~~v~~~~~~~l~i~g 73 (227)
..||+|-|||.+|...++.|.+. +.+|++|+|.. .|++.+.|+.++... +++.. .+.+. . |
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~----~~~~~----~-g 297 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIR----EYAEK----Y-G 297 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchh----hhHhh----c-C
Confidence 36899999999999999999876 59999999931 244444444333221 11111 00000 0 1
Q ss_pred EEEEEEeecCCCCCCCccCCccEEEeec-CcccCHHhHHHHHhCCCCEEEEe
Q 027137 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIIS 124 (227)
Q Consensus 74 k~I~v~~~~~p~~i~W~~~~vDiVve~t-G~f~~~~~a~~hl~~GakkVIis 124 (227)
.... ++++ +|. ...|+.+=|. +..++.+.+..-...|++ +|+.
T Consensus 298 --a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~-~V~E 341 (444)
T PRK14031 298 --CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGVI-AVSE 341 (444)
T ss_pred --CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCCe-EEEC
Confidence 1111 2232 364 5789998877 666888888877666774 4443
No 106
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.63 E-value=0.54 Score=41.91 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=26.4
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
||.|.| +|.||+.+++.|.+.+ .+++++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CeEEEEEc
Confidence 899999 8999999999998874 78888864
No 107
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.52 E-value=0.48 Score=42.41 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=24.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCC-ceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDD-VELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~-~~ivaInd~ 36 (227)
..||+|+|+|.+|..+++.+.+.+. .++. +.|+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIV-GADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEEC
Confidence 4689999999999999998876642 2444 4454
No 108
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.43 E-value=0.39 Score=43.99 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=52.7
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECC-EEEEEEeecC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFGVRN 83 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~g-k~I~v~~~~~ 83 (227)
+|.|.|.|.||-..+..+.-.+--+++++ |. +.+.++..-++.. .+ ..++. +.... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~g-------~~--------~~~~~~~~~~~---~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAGG-------AD--------VVVNPSEDDAG---AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhCC-------Ce--------EeecCccccHH---HH
Confidence 69999999999887666655554566666 55 4555544332211 01 11111 11000 00
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
..++.. ..++|+||||+|...+.+.+-..++.|-.=+++.-+
T Consensus 230 ~~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 230 ILELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 001111 137999999999665556666666555432334333
No 109
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.40 E-value=0.29 Score=41.98 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=27.3
Q ss_pred CC-ccEEEEEccChHHHHHHHHHHcCC--Cce-EEEEeCC
Q 027137 1 MG-KVKIGINGFGRIGRLVARVILQRD--DVE-LVAVNDP 36 (227)
Q Consensus 1 m~-~~kVgI~G~GrIGr~~~r~l~~~~--~~~-ivaInd~ 36 (227)
|| .+||+|+|.|++|+.+++.+.+.+ .++ ++..++.
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 55 689999999999999999887653 344 5555543
No 110
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.23 E-value=0.73 Score=41.15 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=24.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
+||+|+|.|.+|..++..+...+-.+++-+ |.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~-D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLF-DI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE-EC
Confidence 599999999999999888776541255544 44
No 111
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=92.17 E-value=0.48 Score=43.03 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=31.4
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|.+++-+.|+|.+|+..+|.+...|++++|+.-+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCCCCceEEEEec
Confidence 35899999999999999999999999999988765
No 112
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.63 E-value=0.16 Score=40.38 Aligned_cols=33 Identities=39% Similarity=0.646 Sum_probs=27.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+||+|+|.|++|..+.++|.+. +.+|+++...
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARA-GHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHT-TSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeC
Confidence 47999999999999999999876 4899998765
No 113
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.55 E-value=0.25 Score=44.74 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|||+||+.+++.+..- +++|.+.+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f-gm~V~~~d 175 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF-GAKVVYYS 175 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc-CCEEEEEC
Confidence 5799999999999999988655 47877664
No 114
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.47 E-value=0.28 Score=44.56 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+|||+|+|+||+.+++.+... ++++.+.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~~~~ 179 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF-GMRVLIGQL 179 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEECC
Confidence 4899999999999999988655 488877653
No 115
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.15 E-value=1.5 Score=39.82 Aligned_cols=150 Identities=15% Similarity=0.194 Sum_probs=74.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
..||+|+|.|.+|..++..+...+-+.-+.+-|...+. +.-...|-.|. ..+.. .+.+. ..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~---~~g~~~Dl~~~--------------~~~~~-~~~i~-~~ 66 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEK---AEGDAMDLSHA--------------VPFTS-PTKIY-AG 66 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCch---hHHHHHHHHhh--------------ccccC-CeEEE-eC
Confidence 47999999999999999888777644223333432111 11111122111 11111 13333 23
Q ss_pred CCCCCCCccCCccEEEeecCccc----CH------------HhHHHHHhCCCCE--EEEeCCCCCCCeEEeccCccccCC
Q 027137 83 NPEEIPWAETGAEYVVESTGVFT----DK------------DKAAAHLKGGAKK--VIISAPSKDAPMFVVGVNENEYKP 144 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~----~~------------~~a~~hl~~Gakk--VIisaps~d~p~~V~gVN~~~~~~ 144 (227)
+.+++. ++|+||-+.|.-. ++ +.+....+.+.+. +++++|..-.-.++... ..+ +
T Consensus 67 ~~~~~~----~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~~k~--sg~-p 139 (315)
T PRK00066 67 DYSDCK----DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKL--SGF-P 139 (315)
T ss_pred CHHHhC----CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHHHHH--hCC-C
Confidence 445553 8999999998733 22 1123333333322 22355531000011110 112 2
Q ss_pred CCcEEEcCChhhHhHHHHHHHHhhhcCeeEEEEEEE
Q 027137 145 ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180 (227)
Q Consensus 145 ~~~IVSnaSCtTn~Lap~lk~L~~~fgI~~~~~TTv 180 (227)
.+++|. .||.-=-+.+-..|-+.+|+..-.+..+
T Consensus 140 ~~~viG--~gt~LDs~R~~~~la~~l~v~~~~V~~~ 173 (315)
T PRK00066 140 KERVIG--SGTSLDSARFRYMLSEKLDVDPRSVHAY 173 (315)
T ss_pred HHHEee--cCchHHHHHHHHHHHHHhCCCcccEEEE
Confidence 345663 3344334888888888899865544443
No 116
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.05 E-value=0.45 Score=41.44 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.5
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
|| +||+|+|+|.+|..+++.+.+.+
T Consensus 1 ~m-m~I~iIG~G~mG~~la~~l~~~g 25 (267)
T PRK11880 1 MM-KKIGFIGGGNMASAIIGGLLASG 25 (267)
T ss_pred CC-CEEEEEechHHHHHHHHHHHhCC
Confidence 54 79999999999999999887653
No 117
>PLN02256 arogenate dehydrogenase
Probab=90.79 E-value=0.44 Score=43.17 Aligned_cols=34 Identities=32% Similarity=0.676 Sum_probs=27.8
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
+++||+|+|+|.+|..+++.+.+.+ .++++++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECc
Confidence 4579999999999999999987654 788777643
No 118
>PRK06932 glycerate dehydrogenase; Provisional
Probab=90.71 E-value=0.34 Score=43.98 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=24.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|+|+||+.+++.+..- ++++.+.+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f-g~~V~~~~ 177 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL-GMKVLYAE 177 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEEC
Confidence 5899999999999999988654 47877654
No 119
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.71 E-value=0.63 Score=37.25 Aligned_cols=79 Identities=27% Similarity=0.288 Sum_probs=44.9
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCC-ceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 4 VKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 4 ~kVgI~G~-GrIGr~~~r~l~~~~~-~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
+||+|+|. |.+|..++..+...+- -|++-+ |.. .+ .+.-...|-.|..+. .+..+.+..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~-D~~--~~-~~~g~a~Dl~~~~~~--------------~~~~~~i~~- 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLI-DIN--ED-KAEGEALDLSHASAP--------------LPSPVRITS- 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEE-ESS--HH-HHHHHHHHHHHHHHG--------------STEEEEEEE-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEe-ccC--cc-cceeeehhhhhhhhh--------------ccccccccc-
Confidence 49999998 9999999988876653 244433 331 11 111111233222111 112333433
Q ss_pred cCCCCCCCccCCccEEEeecCccc
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFT 105 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~ 105 (227)
.+.+.+. +.|+|+-+.|.-.
T Consensus 62 ~~~~~~~----~aDivvitag~~~ 81 (141)
T PF00056_consen 62 GDYEALK----DADIVVITAGVPR 81 (141)
T ss_dssp SSGGGGT----TESEEEETTSTSS
T ss_pred ccccccc----cccEEEEeccccc
Confidence 5566664 8999999998743
No 120
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.66 E-value=0.36 Score=44.24 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|||+||+.+++.+... ++++.+.+
T Consensus 143 kTvGIiG~G~IG~~va~~l~af-gm~v~~~d 172 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF-GMKVIGYD 172 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEC
Confidence 5899999999999999988766 48877764
No 121
>PLN02928 oxidoreductase family protein
Probab=90.19 E-value=0.4 Score=44.18 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+|||+|+|+||+.+++.+... +++|++.+.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af-G~~V~~~dr 190 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF-GVKLLATRR 190 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEECC
Confidence 5899999999999999998765 488877643
No 122
>PRK07574 formate dehydrogenase; Provisional
Probab=90.05 E-value=0.42 Score=44.83 Aligned_cols=30 Identities=40% Similarity=0.551 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|+|+||+.+++.+... ++++.+.+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-G~~V~~~d 222 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-DVKLHYTD 222 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999998765 47877664
No 123
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.94 E-value=6.6 Score=35.33 Aligned_cols=141 Identities=14% Similarity=0.122 Sum_probs=70.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
-+|.|.|.|.+|...++.+... +.+++++.....+.+.+..+.++ | .+ . ++-..-.+ . +
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----G----a~--------~-v~~~~~~~-~--~ 232 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----G----AT--------Y-VNSSKTPV-A--E 232 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----C----CE--------E-ecCCccch-h--h
Confidence 3789999999999988877665 46777775311123333222111 1 01 0 11000000 0 0
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCe-EE-eccCccccCCCCcEEEcCChhhHhHHH
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM-FV-VGVNENEYKPELNIVSNASCTTNCLAP 161 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~-~V-~gVN~~~~~~~~~IVSnaSCtTn~Lap 161 (227)
.. .+ .++|+||||+|.....+.+-..++.|-+-+++..++.+.+. +- ..++...+..+..+...-.++..-+..
T Consensus 233 -~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~ 308 (355)
T cd08230 233 -VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQ 308 (355)
T ss_pred -hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHH
Confidence 00 12 37899999999754555566677766532333333321111 10 011122222345566655555555666
Q ss_pred HHHHHhhh
Q 027137 162 LAKVIHDK 169 (227)
Q Consensus 162 ~lk~L~~~ 169 (227)
+++.|.+.
T Consensus 309 ~~~~l~~~ 316 (355)
T cd08230 309 AVEDLAQW 316 (355)
T ss_pred HHHHHHhc
Confidence 77777653
No 124
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.93 E-value=0.47 Score=42.00 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=26.2
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|+ +||||+|+|.+|..+++.+.+. +.++.+. |+
T Consensus 1 ~~-~~IgviG~G~mG~~~a~~l~~~-g~~v~~~-d~ 33 (296)
T PRK11559 1 MT-MKVGFIGLGIMGKPMSKNLLKA-GYSLVVY-DR 33 (296)
T ss_pred CC-ceEEEEccCHHHHHHHHHHHHC-CCeEEEE-cC
Confidence 54 6999999999999999998865 4776644 44
No 125
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.87 E-value=0.63 Score=45.10 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=24.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
-||||+|.|.+|+.+++.+... +++++..+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~l~D 37 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVLLYD 37 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEe
Confidence 5699999999999999988766 58876543
No 126
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.74 E-value=0.46 Score=43.47 Aligned_cols=30 Identities=40% Similarity=0.575 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|+|+||+.+++.+... ++++.+.+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~-G~~V~~~d 180 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF-GMRILYYS 180 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEEC
Confidence 5899999999999999998765 47876553
No 127
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.74 E-value=0.48 Score=42.97 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=25.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+|||+|+|+||+.+++.+... ++++.+.+.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af-G~~V~~~~r 153 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF-GMNIYAYTR 153 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEECC
Confidence 5899999999999999977644 588877764
No 128
>PLN00016 RNA-binding protein; Provisional
Probab=89.49 E-value=1.2 Score=40.78 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=27.7
Q ss_pred ccEEEEE----c-cChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGIN----G-FGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~----G-~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
+.||.|. | +|.||+.+++.|.+.+ .+|+++...
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecC
Confidence 4689999 8 9999999999998774 788887653
No 129
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=89.43 E-value=0.47 Score=43.48 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=24.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.++||+|+||||+.++|.+... +++|..-+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~~ 176 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYYD 176 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEEC
Confidence 5899999999999999998733 47765554
No 130
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.42 E-value=2.3 Score=38.17 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=24.8
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+++||+|+|.|.||..+...|.+.+ .++..+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~ 35 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG-FDVHFLL 35 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 4689999999999999988887653 5554443
No 131
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.36 E-value=0.51 Score=44.50 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|+|+||+.+++.+... ++++.+.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f-Gm~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL-GMRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEC
Confidence 5899999999999999988765 47877664
No 132
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.26 E-value=0.87 Score=41.37 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=23.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCc-eEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~-~ivaI 33 (227)
..||+|+|.|.||..++..+...+-. +++-+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~Li 34 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLV 34 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 46999999999999998888766533 44333
No 133
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.26 E-value=1.1 Score=40.94 Aligned_cols=147 Identities=11% Similarity=0.078 Sum_probs=73.5
Q ss_pred CccEEEEEcc-ChHHHHHHHHHHcCCCc------eEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCE
Q 027137 2 GKVKIGINGF-GRIGRLVARVILQRDDV------ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK 74 (227)
Q Consensus 2 ~~~kVgI~G~-GrIGr~~~r~l~~~~~~------~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk 74 (227)
++.||+|+|. |.||..++..+...+-+ +++ +.|...+.+. +.-...|-.|..+ .+..
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~-L~Di~~~~~~-a~g~a~Dl~~~~~-------------~~~~- 64 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQ-LLELPQALKA-LEGVAMELEDCAF-------------PLLA- 64 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEE-EEecCCcccc-cceeehhhhhccc-------------cccC-
Confidence 3579999997 99999998888755422 333 3333111110 1111123222211 1111
Q ss_pred EEEEEeecCCCCCCCccCCccEEEeecCccc----CHHh------------HHHHHhCCC-CE--EEEeCCCCCCCeEEe
Q 027137 75 PVTVFGVRNPEEIPWAETGAEYVVESTGVFT----DKDK------------AAAHLKGGA-KK--VIISAPSKDAPMFVV 135 (227)
Q Consensus 75 ~I~v~~~~~p~~i~W~~~~vDiVve~tG~f~----~~~~------------a~~hl~~Ga-kk--VIisaps~d~p~~V~ 135 (227)
.+++. ..+.+++. +.|+||-+.|.-. ++.. ++.-.+.+- +. +++|+|- |.-+.+.
T Consensus 65 ~~~i~-~~~~~~~~----daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv-D~~t~~~ 138 (322)
T cd01338 65 EIVIT-DDPNVAFK----DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC-NTNALIA 138 (322)
T ss_pred ceEEe-cCcHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH-HHHHHHH
Confidence 13343 34556665 8999999998843 2211 111112221 22 2236552 2111111
Q ss_pred ccCccccCCCCcEEEcCChhhHhHHHHHHHHhhhcCeeE
Q 027137 136 GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (227)
Q Consensus 136 gVN~~~~~~~~~IVSnaSCtTn~Lap~lk~L~~~fgI~~ 174 (227)
--..-.+ +..+|+.. |.---+.+-..|.+.+|+.-
T Consensus 139 ~k~sg~~-p~~~ViG~---t~LDs~Rl~~~la~~lgv~~ 173 (322)
T cd01338 139 MKNAPDI-PPDNFTAM---TRLDHNRAKSQLAKKAGVPV 173 (322)
T ss_pred HHHcCCC-ChHheEEe---hHHHHHHHHHHHHHHhCcCh
Confidence 1000012 23567755 56667889999999999864
No 134
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.20 E-value=0.54 Score=42.91 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHHHHHHHH-cCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~-~~~~~~ivaInd~ 36 (227)
.+|||+|+|+||+.+++.+. .. ++++++ .|+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~-~~~ 177 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILY-NAR 177 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEE-ECC
Confidence 58999999999999999886 44 477664 444
No 135
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=89.12 E-value=0.59 Score=43.13 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=27.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+|||+|+|.||+.++++|... +++++..+++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-GVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-cCEEEEEECc
Confidence 5899999999999999999877 4888777654
No 136
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=89.04 E-value=0.62 Score=42.64 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|+|+||+.+++.+... +++|++.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF-GATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEe
Confidence 5899999999999999988765 47877664
No 137
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.97 E-value=0.61 Score=40.70 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=50.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhc-ccccccCCCCcceEEeCCCeEEECC-EEEEEEe
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFG 80 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllk-yDS~~Gkf~~~~v~~~~~~~l~i~g-k~I~v~~ 80 (227)
..||.|+|.|-+|..++++|...+--+++-+.+...++..+...+- ..++-|+.+ .++-. ..-..+|- -.+....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~K-ae~~~--~~l~~inP~~~V~~~~ 87 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPK-VEVMA--ERIRDINPECEVDAVE 87 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcH-HHHHH--HHHHHHCCCcEEEEee
Confidence 4689999999999999999987642243333322233333332221 234556543 22211 00001221 1122211
Q ss_pred ec-CCCCCC-CccCCccEEEeecCcccCHH
Q 027137 81 VR-NPEEIP-WAETGAEYVVESTGVFTDKD 108 (227)
Q Consensus 81 ~~-~p~~i~-W~~~~vDiVve~tG~f~~~~ 108 (227)
+. ++++++ +-..+.|+||+|+.....+.
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~ 117 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAIDSIRAKV 117 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCCCHHHHH
Confidence 10 111111 11235899999998876553
No 138
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=88.89 E-value=2.6 Score=38.79 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=36.8
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEE-EeCCCcChhhhhhhhcccc
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVA-VNDPFITTDYMTYMFKYDS 51 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~iva-Ind~~~~~~~~ayllkyDS 51 (227)
..+|.|-| .|.||..+++.|++++ ..+.| +-|+ .+.+...||.+.+.
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~-~~~k~~~~L~~l~~ 54 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDP-EDEKKTEHLRKLEG 54 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCc-chhhhHHHHHhccc
Confidence 36899999 8999999999999996 56665 5555 46777677876664
No 139
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.79 E-value=0.65 Score=42.20 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|+|.||+.+++.+... ++++.+.+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af-G~~V~~~~ 166 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW-GFPLRCWS 166 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 5899999999999999998865 47877664
No 140
>PLN02306 hydroxypyruvate reductase
Probab=88.62 E-value=0.63 Score=43.64 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=24.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+|||+|+|+||+.+++.+...=++++.+. |+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~-d~ 197 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL 197 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEE-CC
Confidence 589999999999999998752225787665 44
No 141
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.60 E-value=6 Score=35.05 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=64.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~p 84 (227)
++.|+|.|.||...++.+... +...+.+.|. +.+.+.... .+ ..++- .+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~--~~~rl~~a~-------~~------------~~i~~--------~~~ 196 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA-GGSPPAVWET--NPRRRDGAT-------GY------------EVLDP--------EKD 196 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCceEEEeCC--CHHHHHhhh-------hc------------cccCh--------hhc
Confidence 689999999999888877655 4664444454 223221110 00 01110 000
Q ss_pred CCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCcc-ccCCCCcEEEcCChhhHhHHHHH
Q 027137 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPLA 163 (227)
Q Consensus 85 ~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~-~~~~~~~IVSnaSCtTn~Lap~l 163 (227)
...++|+||||+|.-.+.+.+-..++.|.+ +++-+...+ ++ .+|.. .+.....++.....+..-+..++
T Consensus 197 -----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~-iv~~G~~~~-~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 266 (308)
T TIGR01202 197 -----PRRDYRAIYDASGDPSLIDTLVRRLAKGGE-IVLAGFYTE-PV---NFDFVPAFMKEARLRIAAEWQPGDLHAVR 266 (308)
T ss_pred -----cCCCCCEEEECCCCHHHHHHHHHhhhcCcE-EEEEeecCC-Cc---ccccchhhhcceEEEEecccchhHHHHHH
Confidence 123789999999976555555666666653 443332211 21 12211 12223445555444445566677
Q ss_pred HHHhh
Q 027137 164 KVIHD 168 (227)
Q Consensus 164 k~L~~ 168 (227)
+.+.+
T Consensus 267 ~l~~~ 271 (308)
T TIGR01202 267 ELIES 271 (308)
T ss_pred HHHHc
Confidence 77764
No 142
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.56 E-value=0.34 Score=41.50 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
..||.|+|.|-+|..+++.|...+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999997664
No 143
>PLN02602 lactate dehydrogenase
Probab=88.50 E-value=0.91 Score=42.02 Aligned_cols=150 Identities=16% Similarity=0.200 Sum_probs=75.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
.||+|+|.|.||..++..+...+-..=+.+-|...+. +.-...|-.|.. .+.+. ..|....+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~---~~g~a~DL~~~~--------------~~~~~-~~i~~~~d 99 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDK---LRGEMLDLQHAA--------------AFLPR-TKILASTD 99 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCch---hhHHHHHHHhhh--------------hcCCC-CEEEeCCC
Confidence 6999999999999999888766533323333432111 111112332221 11111 23322234
Q ss_pred CCCCCCccCCccEEEeecCccc----CH------------HhHHHHHhCC--CCEEEEeCCCCCCCeEEeccCccccCCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFT----DK------------DKAAAHLKGG--AKKVIISAPSKDAPMFVVGVNENEYKPE 145 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~----~~------------~~a~~hl~~G--akkVIisaps~d~p~~V~gVN~~~~~~~ 145 (227)
.+++. +.|+||-+.|.-. ++ +.++.-.+.+ +.-+++|+|.+-.-.++... ..+ +.
T Consensus 100 y~~~~----daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~~k~--sg~-p~ 172 (350)
T PLN02602 100 YAVTA----GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKL--SGF-PA 172 (350)
T ss_pred HHHhC----CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH--hCC-CH
Confidence 44443 8999999988742 33 1122222233 22344577642100111111 112 13
Q ss_pred CcEEEcCChhhHhHHHHHHHHhhhcCeeEEEEEEE
Q 027137 146 LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180 (227)
Q Consensus 146 ~~IVSnaSCtTn~Lap~lk~L~~~fgI~~~~~TTv 180 (227)
.++|. .||.-=-+.+-..|.+.+|+..-.+..+
T Consensus 173 ~rviG--~gt~LDs~R~r~~lA~~l~v~~~~V~~~ 205 (350)
T PLN02602 173 NRVIG--SGTNLDSSRFRFLIADHLDVNAQDVQAY 205 (350)
T ss_pred HHEEe--ecchHHHHHHHHHHHHHhCCCccceeee
Confidence 46663 4455556788888889999876554444
No 144
>PLN00106 malate dehydrogenase
Probab=88.22 E-value=4.4 Score=37.11 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=21.3
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCCCc
Q 027137 3 KVKIGINGF-GRIGRLVARVILQRDDV 28 (227)
Q Consensus 3 ~~kVgI~G~-GrIGr~~~r~l~~~~~~ 28 (227)
+.||+|+|. |+||..++..+..++..
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~ 44 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLV 44 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC
Confidence 369999997 99999999988765533
No 145
>PRK05442 malate dehydrogenase; Provisional
Probab=88.17 E-value=1.1 Score=41.05 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=74.4
Q ss_pred CC-ccEEEEEcc-ChHHHHHHHHHHcCCCc------eEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEEC
Q 027137 1 MG-KVKIGINGF-GRIGRLVARVILQRDDV------ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG 72 (227)
Q Consensus 1 m~-~~kVgI~G~-GrIGr~~~r~l~~~~~~------~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~ 72 (227)
|+ +.||+|+|. |.+|..++..+...+-+ +++-+ |...+.+. +.-...|-.|..+. +.
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~Li-Di~~~~~~-~~g~a~Dl~~~~~~-------------~~ 65 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLL-EIPPALKA-LEGVVMELDDCAFP-------------LL 65 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEE-ecCCcccc-cceeehhhhhhhhh-------------hc
Confidence 53 689999997 99999988877654322 33333 33111100 11111232222111 11
Q ss_pred CEEEEEEeecCCCCCCCccCCccEEEeecCccc----CHH------------hHHHHHhCCC-CE--EEEeCCCCCCCeE
Q 027137 73 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFT----DKD------------KAAAHLKGGA-KK--VIISAPSKDAPMF 133 (227)
Q Consensus 73 gk~I~v~~~~~p~~i~W~~~~vDiVve~tG~f~----~~~------------~a~~hl~~Ga-kk--VIisaps~d~p~~ 133 (227)
. .+++. ..+.+++. ++|+||-+.|... +|. .++.-.+.+. +. +++|+|- |.-+.
T Consensus 66 ~-~~~i~-~~~y~~~~----daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv-Dv~t~ 138 (326)
T PRK05442 66 A-GVVIT-DDPNVAFK----DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA-NTNAL 138 (326)
T ss_pred C-CcEEe-cChHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch-HHHHH
Confidence 1 12332 24456664 8999999998632 222 1122222121 22 2346663 21111
Q ss_pred EeccCccccCCCCcEEEcCChhhHhHHHHHHHHhhhcCeeEEEEE
Q 027137 134 VVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178 (227)
Q Consensus 134 V~gVN~~~~~~~~~IVSnaSCtTn~Lap~lk~L~~~fgI~~~~~T 178 (227)
+.--..-.| +.++||.. |+-=-+++-..|.+++++.--.+.
T Consensus 139 v~~k~s~g~-p~~rViG~---t~LDs~R~r~~la~~l~v~~~~V~ 179 (326)
T PRK05442 139 IAMKNAPDL-PAENFTAM---TRLDHNRALSQLAAKAGVPVADIK 179 (326)
T ss_pred HHHHHcCCC-CHHHEEee---eHHHHHHHHHHHHHHhCcChHHeE
Confidence 111000012 23567754 455568899999999999754443
No 146
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=88.05 E-value=0.93 Score=41.46 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=19.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
+||+|+|.|.||..++..+....
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 48999999999999988886553
No 147
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.03 E-value=1.4 Score=37.53 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.3
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
|||+|+| +|.+|..+++.+.+.+ .+++..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~ 30 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIG 30 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEE
Confidence 3899997 9999999999998764 565544
No 148
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.94 E-value=0.38 Score=41.39 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=25.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
..||.|+|.|-+|..+++.|...+ +.-+.+.|+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 468999999999999999998764 544445444
No 149
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=87.80 E-value=2.9 Score=37.43 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=81.9
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
..|||..| -|..|+.+.+.+...|.+|+..+.... .+-. .| + +-++ .++.+ .+ +...+ +.-..+
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssre--l~Gq-kl-~-~ytk-----~eiqy--~~-lst~D--~~klee 83 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRE--LAGQ-KL-E-VYTK-----LEIQY--AD-LSTVD--AVKLEE 83 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehhh--hcCC-cc-c-Ccch-----hheee--cc-cchhh--HHHhhc
Confidence 47999999 799999999999999999988876531 1100 00 0 1111 22222 11 21111 111111
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCC--CC--eEEecc---Ccc-ccCCCCcEEEcCC
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--AP--MFVVGV---NEN-EYKPELNIVSNAS 153 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d--~p--~~V~gV---N~~-~~~~~~~IVSnaS 153 (227)
| .-+|..+.+-+--.-+.....-..+--|-++|+-+.+. .| -.+||. |+. ++. ..+.|+||.
T Consensus 84 --~-------~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNPG 153 (340)
T KOG4354|consen 84 --P-------HAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANPG 153 (340)
T ss_pred --C-------CceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCCC
Confidence 1 13455555554433333333322233344677655321 45 566654 432 232 357899999
Q ss_pred hhhHh----HHHHHHHHhhhcCeeEEEEEEEeeccCCC
Q 027137 154 CTTNC----LAPLAKVIHDKFGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 154 CtTn~----Lap~lk~L~~~fgI~~~~~TTvha~t~~q 187 (227)
|-.+. |.|++|.+.-+-.| -.+-.||++.
T Consensus 154 CYaTgsQl~l~Pllk~i~g~p~i-----fgvSGySGAG 186 (340)
T KOG4354|consen 154 CYATGSQLPLVPLLKAILGKPEI-----FGVSGYSGAG 186 (340)
T ss_pred cccccCcccchHHHHHhcCCcce-----eeeccccCCC
Confidence 96553 57888877644332 2234466665
No 150
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.77 E-value=0.75 Score=43.08 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=25.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+|||+|+|.||+.+++.+... ++++.+. ||
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~-G~~V~~~-dp 147 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL-GIKTLLC-DP 147 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEE-CC
Confidence 5899999999999999988766 4887765 44
No 151
>PRK08605 D-lactate dehydrogenase; Validated
Probab=87.71 E-value=0.82 Score=41.77 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=23.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
.+|||+|+|+||+.+++.+...-++++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~ 176 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAY 176 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 589999999999999998843335777664
No 152
>PLN03139 formate dehydrogenase; Provisional
Probab=87.71 E-value=0.71 Score=43.36 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+|||+|+|+||+.+++.+... ++++.+. |+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~~-d~ 230 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLYH-DR 230 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEEE-CC
Confidence 5899999999999999998765 5787664 44
No 153
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=87.65 E-value=1.4 Score=38.23 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=24.9
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+|.|.| +|.+|+.+++.|.+. +.++.++.-
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeC
Confidence 478999 899999999999876 478777764
No 154
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.56 E-value=1.2 Score=40.52 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=23.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
||+|+|.|.||..++..+...+-+.=+.+-|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 79999999999999888876654432333343
No 155
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=87.23 E-value=0.93 Score=42.69 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.3
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|.++||+|+|+|.+|..++..+.+.+ +++++++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D 33 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQ-KQVIGVD 33 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCC-CEEEEEe
Confidence 66689999999999999999988774 8887775
No 156
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.16 E-value=3.9 Score=39.26 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=55.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
..||.|.|+|+-|+..++.|.+.+ .++. ++|....++... ....+. .+ |.+...+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v~-v~D~~~~~~~~~-------~~~~~~-------~~---------i~~~~g~ 61 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AEVT-VSDDRPAPEGLA-------AQPLLL-------EG---------IEVELGS 61 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-CeEE-EEcCCCCccchh-------hhhhhc-------cC---------ceeecCc
Confidence 369999999999999999998875 5544 444321221100 000000 01 1121112
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
.+. .+|. +.|+|+-+-|...+........++|++
T Consensus 62 ~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 62 HDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred cch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 233 4554 789999999999999888888889985
No 157
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.07 E-value=0.84 Score=37.81 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=22.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
||.|+|.|-+|..+++.|...+ +.=+.+-|
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD 30 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVD 30 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6899999999999999987664 54333444
No 158
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=86.95 E-value=0.74 Score=41.32 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=29.4
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC--------CceEEEEeCC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDP 36 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~--------~~~ivaInd~ 36 (227)
|++++|+++|+|-+|+.+++.+.... .+.+|+++|.
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 67899999999999999998875211 2789999885
No 159
>PLN02712 arogenate dehydrogenase
Probab=86.82 E-value=0.99 Score=45.27 Aligned_cols=32 Identities=31% Similarity=0.665 Sum_probs=27.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
++||||+|+|.||+.+++.+.+. +.+|++++.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~-G~~V~~~dr 400 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQ-GHTVLAYSR 400 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHC-cCEEEEEEC
Confidence 57999999999999999999865 478887654
No 160
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.75 E-value=0.8 Score=40.92 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
..+|.|+|.|-+|..++++|...+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999998764
No 161
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.52 E-value=1 Score=39.77 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=24.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
||+|+|+|.+|..+++.+.+. +.++.+++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d 30 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVS 30 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEE
Confidence 899999999999999998776 46766664
No 162
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.32 E-value=1.2 Score=39.35 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
|..+||+++|+|.+|..+++.+.+.+
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g 26 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHAN 26 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCC
Confidence 65679999999999999999998764
No 163
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.85 E-value=1.6 Score=39.18 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=23.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 027137 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~-~ivaIn 34 (227)
||+|+|.|.+|+.++..+...+-. +++-++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 899999999999999998876533 555443
No 164
>PLN02712 arogenate dehydrogenase
Probab=85.77 E-value=1.2 Score=44.78 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=26.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
++||||+|+|++|+.+++.+.+. +++|++++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr 83 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ-GHTVLAHSR 83 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 47999999999999999998876 478877654
No 165
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=85.74 E-value=1.2 Score=38.27 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=27.5
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
|||||+| .|++|..+++-+..++ -+++||.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEe
Confidence 4999999 8999999999998884 89999875
No 166
>PLN02688 pyrroline-5-carboxylate reductase
Probab=85.44 E-value=1.8 Score=37.56 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=25.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCC---ceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~---~~ivaInd~ 36 (227)
+||+++|+|.+|..+++.+.+.+. .+++..++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 489999999999999999987642 266666455
No 167
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.42 E-value=1.9 Score=40.86 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
-+|+|.|+|.||+.+++.+...+ .+++. .|.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~ 233 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV 233 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 48999999999999999887664 67555 444
No 168
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.33 E-value=1.6 Score=37.89 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=24.3
Q ss_pred EEEEEccChHHHHHHHHHHcCC-CceEEEEeCC
Q 027137 5 KIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~-~~~ivaInd~ 36 (227)
||||+|+|++|+.+++.+.+.+ ...-+.+.+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 8999999999999999998654 2333455554
No 169
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=85.24 E-value=1.3 Score=41.48 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=25.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+|||+|+|.||+.+++.+... ++++.+. ||
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~-G~~V~~~-Dp 147 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL-GWKVLVC-DP 147 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE-CC
Confidence 5899999999999999998765 4887665 44
No 170
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=84.75 E-value=1.4 Score=37.00 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=22.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|||+|+|+|.+|-..+-.+.+. +++++++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-GHQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-TSEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhC-CCEEEEEe
Confidence 4999999999999887777776 48888873
No 171
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=84.63 E-value=1.3 Score=43.08 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|+|+||+.+++.+... ++++.+.+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d 168 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-GMKVLAYD 168 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999998765 47877764
No 172
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.49 E-value=1.3 Score=37.57 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=28.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCc-eEEEEeCCCcChhhhh
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMT 44 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~-~ivaInd~~~~~~~~a 44 (227)
.-||.|+|.|-+|..+++.|...+ + +++-+.+...+.+.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchh
Confidence 468999999999999999998764 4 4444443323344443
No 173
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.31 E-value=7 Score=35.03 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=50.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~-~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
-+|.|+|.|.+|...++.+...+ . +++++.. +.+.+..+.+ +|. + ..++-+.-.+ .+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~---~~~~~~~a~~----lGa----~--------~vi~~~~~~~-~~- 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADV---SPRSLSLARE----MGA----D--------KLVNPQNDDL-DH- 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeC---CHHHHHHHHH----cCC----c--------EEecCCcccH-HH-
Confidence 36899999999999888776654 5 4555432 2333333322 221 0 1111100001 00
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
-.. .. .++|+||||+|.-.+.+.+-..++.|-+ +++
T Consensus 229 ~~~--~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~-iv~ 264 (343)
T PRK09880 229 YKA--EK--GYFDVSFEVSGHPSSINTCLEVTRAKGV-MVQ 264 (343)
T ss_pred Hhc--cC--CCCCEEEECCCCHHHHHHHHHHhhcCCE-EEE
Confidence 000 01 1589999999975455666777777653 444
No 174
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=84.28 E-value=0.6 Score=39.69 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=25.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
..||+|+|.|-+|..++..|...+ +.-+.+-|.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G-vg~i~lvD~ 53 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG-IGKLILVDF 53 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEECC
Confidence 468999999999999999987664 643444454
No 175
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.27 E-value=1.6 Score=39.06 Aligned_cols=29 Identities=34% Similarity=0.668 Sum_probs=24.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|||++|+|.+|..+++.+.+. +.+++..+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-g~~v~v~d 30 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-GHEVVGYD 30 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-CCeEEEEE
Confidence 899999999999999999876 47765543
No 176
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.23 E-value=0.83 Score=39.99 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=56.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcc-cccccCCCCcceEEeCCCeE-EECC-EEEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTL-LFGE-KPVTVF 79 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllky-DS~~Gkf~~~~v~~~~~~~l-~i~g-k~I~v~ 79 (227)
.-||.|+|.|-+|..+++.|...+--++.-+.+...+...+...+-| ++.-|+.+ .+.-. . .| .+|- -.|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~K-a~~a~--~-~l~~lnp~v~i~~~ 107 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPK-VESAR--A-ALARINPHIAIETI 107 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChH-HHHHH--H-HHHHHCCCCEEEEE
Confidence 35899999999999999999866422443343333344444332223 12234432 11100 0 00 1111 112221
Q ss_pred eec-CCCCCC--CccCCccEEEeecCcccCHHhHHH-HHhCCCCEEEEeCC
Q 027137 80 GVR-NPEEIP--WAETGAEYVVESTGVFTDKDKAAA-HLKGGAKKVIISAP 126 (227)
Q Consensus 80 ~~~-~p~~i~--W~~~~vDiVve~tG~f~~~~~a~~-hl~~GakkVIisap 126 (227)
.++ ++++++ |. +.|+||+|+..+.++..... ..+.+. -+|++.
T Consensus 108 ~~~i~~~~~~~~~~--~~DiVi~~~D~~~~r~~ln~~~~~~~i--p~v~~~ 154 (245)
T PRK05690 108 NARLDDDELAALIA--GHDLVLDCTDNVATRNQLNRACFAAKK--PLVSGA 154 (245)
T ss_pred eccCCHHHHHHHHh--cCCEEEecCCCHHHHHHHHHHHHHhCC--EEEEee
Confidence 111 111211 33 78999999998866543332 234454 344443
No 177
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=84.23 E-value=5.9 Score=34.76 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.3
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|-|-| .|.||+.+++.|.+.+ .+++++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence 4799999 8999999999998874 6777665
No 178
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.76 E-value=1.5 Score=42.71 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=25.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|+|+||+.+++.+... ++++.+.+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d 170 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF-GMKVIAYD 170 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 5899999999999999998765 47877765
No 179
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.65 E-value=0.91 Score=39.67 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=54.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhhhccc-ccccCCCCcceEEeCCCeE-EEC-CEEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKYD-SVHGQWKHHELKVKDDKTL-LFG-EKPVTV 78 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~-~~~~~~~ayllkyD-S~~Gkf~~~~v~~~~~~~l-~i~-gk~I~v 78 (227)
.-||.|+|.|-+|..+++.|...+ +.-+.+.|. ..++..+..-+-|+ +.-|+.+ .+.-. . .| .+| .-.|..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~K-a~~a~--~-~l~~inp~v~i~~ 98 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPK-VESAK--D-ALTQINPHIAINP 98 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcH-HHHHH--H-HHHHHCCCcEEEE
Confidence 358999999999999999998764 433334443 23333333222232 2334432 11100 0 00 011 111222
Q ss_pred Eeec-CCCCCCCccCCccEEEeecCcccCHHhHH-HHHhCCCC
Q 027137 79 FGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAK 119 (227)
Q Consensus 79 ~~~~-~p~~i~W~~~~vDiVve~tG~f~~~~~a~-~hl~~Gak 119 (227)
..++ +.++++=--.+.|+||+|+..+.++.... ...+.|.+
T Consensus 99 ~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip 141 (240)
T TIGR02355 99 INAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVP 141 (240)
T ss_pred EeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 2111 11111100127899999999987764443 23345654
No 180
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=83.50 E-value=2.9 Score=37.80 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=24.2
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCC-ceEEEEe
Q 027137 4 VKIGINGF-GRIGRLVARVILQRDD-VELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~-GrIGr~~~r~l~~~~~-~~ivaIn 34 (227)
+||+|+|. |.+|..++..+...+- .+++.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 48999995 9999999998887753 2566553
No 181
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.12 E-value=1.9 Score=38.54 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=25.0
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|||++|+|.+|..+++.+.+. +++++.. |.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-g~~v~v~-dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-GHEVVGY-DV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEE-EC
Confidence 899999999999999999876 4777654 44
No 182
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.12 E-value=2.3 Score=37.71 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
.+||+++|+|.+|..+++.+.+.+
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g 25 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKN 25 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCC
Confidence 469999999999999999998654
No 183
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=83.11 E-value=2.8 Score=33.45 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=57.7
Q ss_pred EEEEc-cChHHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhhhc-ccccccCCCCcceEEeCCC-------eEEECCEE
Q 027137 6 IGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK-------TLLFGEKP 75 (227)
Q Consensus 6 VgI~G-~GrIGr~~~r~l~~~~-~~~ivaInd~~~~~~~~ayllk-yDS~~Gkf~~~~v~~~~~~-------~l~i~gk~ 75 (227)
|.|.| +|-||+..++.+.+.| +|+++++..- .+.+.+..+.+ |.. .-+...+.+ .+.-.+..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~-~n~~~L~~q~~~f~p-------~~v~i~~~~~~~~l~~~~~~~~~~ 72 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG-SNIEKLAEQAREFKP-------KYVVIADEEAYEELKKALPSKGPG 72 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES-STHHHHHHHHHHHT--------SEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC-CCHHHHHHHHHHhCC-------CEEEEcCHHHHHHHHHHhhhcCCC
Confidence 68999 9999999999998766 6999999764 36666654432 211 011110000 00001112
Q ss_pred EEEEeecC-CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEe
Q 027137 76 VTVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (227)
Q Consensus 76 I~v~~~~~-p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIis 124 (227)
++++...+ ..++- .+.++|+|+.+.-.+...+-.-..+++| |++-+.
T Consensus 73 ~~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~iaLA 120 (129)
T PF02670_consen 73 IEVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIALA 120 (129)
T ss_dssp SEEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTT-SEEEE-
T ss_pred CEEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCC-CeEEEe
Confidence 23322111 11110 1136888888887777777677777888 455553
No 184
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.70 E-value=2.2 Score=37.83 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=24.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+||+|+|.|.+|..++..+.+.+ .++..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 48999999999999999988763 6654443
No 185
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=82.55 E-value=2 Score=38.40 Aligned_cols=29 Identities=28% Similarity=0.625 Sum_probs=24.5
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
||||+|+|++|..+.+.+.+. +.+++..+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-g~~V~~~d 30 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-GHDCVGYD 30 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-CCEEEEEE
Confidence 899999999999999999876 47776643
No 186
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=82.44 E-value=7.9 Score=33.70 Aligned_cols=136 Identities=15% Similarity=0.247 Sum_probs=68.5
Q ss_pred EEEEEccChHHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~-ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+|.|.|.|.+|...++.+... +.+ ++++ +. +.+.+..+.++ |- + ..++.+.. . +.
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~-~~--~~~r~~~a~~~----Ga----~--------~~i~~~~~---~-~~ 178 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAA-GAARVVAA-DP--SPDRRELALSF----GA----T--------ALAEPEVL---A-ER 178 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEE-CC--CHHHHHHHHHc----CC----c--------EecCchhh---H-HH
Confidence 689999999999888877655 465 6666 43 33333222211 10 0 11111000 0 00
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCccc-cCCCCcEEEcCChhhHhHHHH
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENE-YKPELNIVSNASCTTNCLAPL 162 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~~-~~~~~~IVSnaSCtTn~Lap~ 162 (227)
..++. ...++|+||||+|.-.+.+.+-..++.|.+-+++.......+. .+|... +.++..|+..-..+...+..+
T Consensus 179 ~~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~---~i~~~~~~~~~~~i~g~~~~~~~~~~~~ 254 (280)
T TIGR03366 179 QGGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPV---ALDPEQVVRRWLTIRGVHNYEPRHLDQA 254 (280)
T ss_pred HHHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCce---eeCHHHHHhCCcEEEecCCCCHHHHHHH
Confidence 00010 1137899999999765666666777766543333322211121 223222 222445655544444556667
Q ss_pred HHHHhh
Q 027137 163 AKVIHD 168 (227)
Q Consensus 163 lk~L~~ 168 (227)
++.|.+
T Consensus 255 ~~~l~~ 260 (280)
T TIGR03366 255 VRFLAA 260 (280)
T ss_pred HHHHHh
Confidence 777765
No 187
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=82.29 E-value=0.97 Score=37.71 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=23.4
Q ss_pred HHHHhhh-cCeeEEEEEEEeeccCCC
Q 027137 163 AKVIHDK-FGIVEGLMTTVHSITGIR 187 (227)
Q Consensus 163 lk~L~~~-fgI~~~~~TTvha~t~~q 187 (227)
|+||+++ ++++++.++|++++|+..
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG 26 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAG 26 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGC
T ss_pred CcchhhCcCCCcEEEEEEeechhhcc
Confidence 6889997 999999999999999987
No 188
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.28 E-value=1.5 Score=40.37 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=25.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
..||.|+|.|.+|..+++.|...+ +.-+.|-|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG-IGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 468999999999999999998764 544444454
No 189
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=82.09 E-value=1.1 Score=41.40 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.4
Q ss_pred cEEEEEccChHHHHHHHHHHcC
Q 027137 4 VKIGINGFGRIGRLVARVILQR 25 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~ 25 (227)
-+|||+|+|+||+.+++.|...
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc
Confidence 5899999999999999988653
No 190
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=81.82 E-value=0.74 Score=41.99 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=23.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
||.|+|.|-+|-.+++.|...+ +.=+.+.|
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG-Vg~ItlvD 30 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG-VRHITFVD 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence 6899999999999999998764 43334444
No 191
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=81.50 E-value=2.2 Score=38.23 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.2
Q ss_pred CccEEEEEccChHHHHHHHHHHcCC
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
++++|+|+|+|.||+.+.+.+.+.+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 3579999999999999999998775
No 192
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=81.45 E-value=12 Score=35.63 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=29.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~ 37 (227)
.||+|-|||.+|+..++-+.+. +.++|++.|..
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds~ 240 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSK 240 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence 6899999999999999988776 69999999874
No 193
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=81.44 E-value=2.6 Score=36.92 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=22.4
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
|-.+||+|+|+|.+|..+++.+.+.+
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCC
Confidence 44579999999999999999998664
No 194
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.35 E-value=2.7 Score=37.24 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=26.3
Q ss_pred CCc-cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGK-VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~-~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|+. .||||+|.|.+|..+++.+... +.+++..+
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d 34 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAA-GMDVWLLD 34 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhc-CCeEEEEe
Confidence 543 5799999999999999998876 47766554
No 195
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=81.14 E-value=7.5 Score=35.05 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=52.0
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEE-EEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEe
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELV-AVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~iv-aInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~ 80 (227)
+-||-|.| +|++|..+++.+..-+ ++++ +|| | |++. .+ +.|.+ .+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g-~~~v~~V~-p-----------------~~~~-~~----------v~G~~--~y- 52 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYG-TNIVGGVT-P-----------------GKGG-TT----------VLGLP--VF- 52 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCC-CCEEEEEC-C-----------------CCCc-ce----------ecCee--cc-
Confidence 45899999 8999999999987664 4343 454 3 1111 11 11211 11
Q ss_pred ecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 81 ~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
++.+++|..- ++|+++-+.+.....+......++|+|.+||
T Consensus 53 -~sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 53 -DSVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred -CCHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 2234444211 3688888888776666667777778877655
No 196
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.80 E-value=2.1 Score=43.20 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=74.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcc-------cccccCCCCcceEEeCCCeEEECCEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKY-------DSVHGQWKHHELKVKDDKTLLFGEKPV 76 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllky-------DS~~Gkf~~~~v~~~~~~~l~i~gk~I 76 (227)
.||+|+|.|.+|+.++..+....+++++-+ |+ +.+.+....++ .-..|++. .. .. +. .. ..|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~-d~--~~~~l~~~~~~~~~~l~~~~~~~~~~-~~-~~-~~---~~--~~i 378 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIK-DI--NPQGINHALKYSWDLLDKKVKRRHLK-PS-ER-DK---QM--ALI 378 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEE-eC--CHHHHHHHHHHHHHHHHHHHHcCCCC-HH-HH-HH---HH--hcE
Confidence 479999999999999887773445776554 44 33433322111 11122222 00 00 00 00 123
Q ss_pred EEEeecCCCCCCCccCCccEEEeecCcccCHHh-----HHHHHhCCCCEEEEeCCCC----------CCCeEEecc---C
Q 027137 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDK-----AAAHLKGGAKKVIISAPSK----------DAPMFVVGV---N 138 (227)
Q Consensus 77 ~v~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~-----a~~hl~~GakkVIisaps~----------d~p~~V~gV---N 138 (227)
++. .+.+.+ .++|+||||...-...+. ...+..-++ ++-|+.|. ..|-=+.|. |
T Consensus 379 ~~~--~~~~~~----~~aDlViEav~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~ig~Hff~ 450 (708)
T PRK11154 379 SGT--TDYRGF----KHADVVIEAVFEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAAARPEQVIGLHYFS 450 (708)
T ss_pred EEe--CChHHh----ccCCEEeecccccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhcCcccceEEEecCC
Confidence 332 233333 389999999766554322 223333343 55576652 123212222 2
Q ss_pred ccccCCCCcEEEcCChhhHhHHHHHHHHhhhcCeeEE
Q 027137 139 ENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEG 175 (227)
Q Consensus 139 ~~~~~~~~~IVSnaSCtTn~Lap~lk~L~~~fgI~~~ 175 (227)
+-.+-+--.||..+.+.-..+.-+...+. ..|..-+
T Consensus 451 P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~-~~gk~pv 486 (708)
T PRK11154 451 PVEKMPLVEVIPHAKTSAETIATTVALAK-KQGKTPI 486 (708)
T ss_pred ccccCceEEEECCCCCCHHHHHHHHHHHH-HcCCceE
Confidence 22221223467666665555555555554 4565443
No 197
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.79 E-value=3 Score=36.96 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=25.5
Q ss_pred CC-ccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 1 m~-~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
|| ..||+|+|.|.+|..++..+... +.+++..
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~-G~~V~l~ 33 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALA-GYDVLLN 33 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEE
Confidence 44 46899999999999999988876 4676654
No 198
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=80.55 E-value=2.7 Score=38.75 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=25.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+|||+|+|.+|+.+++.|.+.+ ++++....
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 68999999999999999998764 77765444
No 199
>PRK08818 prephenate dehydrogenase; Provisional
Probab=80.41 E-value=2.8 Score=39.12 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=25.3
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCCCceEEEE
Q 027137 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 3 ~~kVgI~G~-GrIGr~~~r~l~~~~~~~ivaI 33 (227)
+.||+|+|+ |.||+.+.+++.+..+.+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 689999998 9999999999976545666554
No 200
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.39 E-value=2.9 Score=36.79 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=26.0
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|.+.||+|+|.|.+|..++..+...+ .+++.+.
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g-~~V~~~d 33 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAG-YDVVMVD 33 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCC-CceEEEe
Confidence 43358999999999999999887764 6766653
No 201
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=80.21 E-value=24 Score=29.83 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.||-|+|.|.+|...++.|.+.+ .+++.|+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs 40 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVIS 40 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence 58999999999999999888775 6776665
No 202
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=80.04 E-value=2.2 Score=37.74 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=24.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
||||+|+|.+|..+++.+.+. +++++..+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G~~V~~~d 29 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-GYQLHVTT 29 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-CCeEEEEc
Confidence 699999999999999998876 47876553
No 203
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=79.93 E-value=8.8 Score=36.53 Aligned_cols=82 Identities=13% Similarity=0.209 Sum_probs=53.0
Q ss_pred ccEEEEEcc----ChHHHHHHHHHHcCCCc--eEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEE
Q 027137 3 KVKIGINGF----GRIGRLVARVILQRDDV--ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (227)
Q Consensus 3 ~~kVgI~G~----GrIGr~~~r~l~~~~~~--~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I 76 (227)
.-+|+|+|. |.+|+.+++.+.+.+ + ++..||-. ++..+ |.+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~------------~~~i~-------------------G~~- 53 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPK------------AGEIL-------------------GVK- 53 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCC------------CCccC-------------------Ccc-
Confidence 467999996 889999999998764 4 67777632 12211 111
Q ss_pred EEEeecCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 77 ~v~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
++ .+.+++| ..+|+++-+++.....+......+.|+|.+||
T Consensus 54 -~~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 54 -AY--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred -cc--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 11 2233333 25788888888777777777777788887765
No 204
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=79.88 E-value=3 Score=36.62 Aligned_cols=137 Identities=20% Similarity=0.322 Sum_probs=71.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCC--------cChhhhhhhhcccccccC-CCCcceEEeCCCeEEECC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF--------ITTDYMTYMFKYDSVHGQ-WKHHELKVKDDKTLLFGE 73 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~--------~~~~~~ayllkyDS~~Gk-f~~~~v~~~~~~~l~i~g 73 (227)
-.+|+|-|||.+|+..++.|.+. +..+++|.|.. .|++.+..+. +. +|. +. .+ ... .-++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~-Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~----~~-~~~--~~~~ 100 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAEL-GAKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVD----DY-PLE--SPDG 100 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHT-TEEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHST----TG-THT--CSST
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccc----cc-ccc--cccc
Confidence 36899999999999999999887 59999996642 2333332221 11 111 11 00 000 0000
Q ss_pred EEEEEEeecCCCCCCCccCCccEEEeec-CcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCccccCCCCcEEEcC
Q 027137 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNA 152 (227)
Q Consensus 74 k~I~v~~~~~p~~i~W~~~~vDiVve~t-G~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~~~~~~~~IVSna 152 (227)
.-.+ .. .+++ | +.++|+.+=|. +--++.+.++..++.||| +|+-+. +-|+- ++-.. .+ .+..|+-.|
T Consensus 101 -~~~~-~~--~~~i-l-~~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIvegA--N~p~t-~~a~~-~L-~~rGI~viP 168 (244)
T PF00208_consen 101 -AEYI-PN--DDEI-L-SVDCDILIPCALGNVINEDNAPSLIKSGAK-IIVEGA--NGPLT-PEADE-IL-RERGILVIP 168 (244)
T ss_dssp -SEEE-CH--HCHG-G-TSSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEEESS--SSSBS-HHHHH-HH-HHTT-EEE-
T ss_pred -eeEe-cc--cccc-c-cccccEEEEcCCCCeeCHHHHHHHHhccCc-EEEeCc--chhcc-HHHHH-HH-HHCCCEEEc
Confidence 0011 11 0111 4 35899999998 777788888877888887 565432 22321 11111 11 134555555
Q ss_pred ChhhHhHHHH
Q 027137 153 SCTTNCLAPL 162 (227)
Q Consensus 153 SCtTn~Lap~ 162 (227)
.=.+|+-..+
T Consensus 169 D~~aNaGGvi 178 (244)
T PF00208_consen 169 DFLANAGGVI 178 (244)
T ss_dssp HHHHTTHHHH
T ss_pred chhhcCCCeE
Confidence 5555554433
No 205
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.70 E-value=12 Score=35.94 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=48.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
.||.|.|+|++|+..++.|...+ .++++ .|. ..+....+.+ . |-.+. .+ ...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~--~~~~~~~l~~----~------------g~~~~-~~-------~~~ 64 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDD--DPDALRPHAE----R------------GVATV-ST-------SDA 64 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcC--CHHHHHHHHh----C------------CCEEE-cC-------cch
Confidence 48999999999999998777664 66554 664 2222222110 0 10011 11 112
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Ga 118 (227)
++.+. +.|+||.|.|.-.+........+.|+
T Consensus 65 ~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 65 VQQIA----DYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred HhHhh----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 23332 56999999998776655555555665
No 206
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=79.49 E-value=2.5 Score=36.89 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=55.1
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhhhccc-ccccCCCCcceEEeCCCeE-EEC-CEEEEEEe
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKYD-SVHGQWKHHELKVKDDKTL-LFG-EKPVTVFG 80 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~-~~~~~~~ayllkyD-S~~Gkf~~~~v~~~~~~~l-~i~-gk~I~v~~ 80 (227)
||.|+|.|-+|..+++.|...+ +.-..|-|. ..+...+..-|-|. +.-|+.+ .++-.+ .+ .+| +-.|....
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~K-a~va~~---~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK-SEVAAE---AVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcchhhccccCCChhhCChHH-HHHHHH---HHHHHCCCCEEEEEe
Confidence 6899999999999999997664 433333332 23444443332232 2235443 222110 00 111 11121111
Q ss_pred ec-CC-CCCC---CccCCccEEEeecCcccCHHhHHHH-HhCCCCEEEEeCC
Q 027137 81 VR-NP-EEIP---WAETGAEYVVESTGVFTDKDKAAAH-LKGGAKKVIISAP 126 (227)
Q Consensus 81 ~~-~p-~~i~---W~~~~vDiVve~tG~f~~~~~a~~h-l~~GakkVIisap 126 (227)
++ ++ ++++ | .+.|+|++|+..+.++...... .+.+. -+|++.
T Consensus 76 ~~i~~~~~~~~~f~--~~~DvVi~a~Dn~~aR~~ln~~c~~~~i--plI~~g 123 (234)
T cd01484 76 NKVGPEQDFNDTFF--EQFHIIVNALDNIIARRYVNGMLIFLIV--PLIESG 123 (234)
T ss_pred ccCChhhhchHHHH--hCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEc
Confidence 11 00 1111 3 3789999999887666544322 23454 345444
No 207
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.49 E-value=3.3 Score=37.26 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=25.6
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
++||+|+|.|.+|..++..+.+.+ .++..++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~r 35 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKG-VPVRLWAR 35 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC-CeEEEEeC
Confidence 469999999999999999988763 66665543
No 208
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=79.30 E-value=4 Score=30.50 Aligned_cols=29 Identities=31% Similarity=0.685 Sum_probs=23.4
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 6 IGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 6 VgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
|-|.|+|++|+.+++.|.+ .+.+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEEC
Confidence 4689999999999999998 4578887764
No 209
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=79.28 E-value=3 Score=37.39 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=25.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+++|+|+|++|+.+++.+...+ .++...+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEeC
Confidence 58999999999999999998765 67665553
No 210
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=79.16 E-value=6.4 Score=36.69 Aligned_cols=97 Identities=22% Similarity=0.315 Sum_probs=54.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEE-EEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV-TVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I-~v~~~~ 82 (227)
-.|+|.|+|-+|-..++.+.....-.|+||. + +++.+....++--|| .+|.+.. .+.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD-~--~~~Kl~~A~~fGAT~----------------~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVD-I--NPEKLELAKKFGATH----------------FVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEe-C--CHHHHHHHHhcCCce----------------eecchhhhhHHH--
Confidence 3589999999999888887766656788874 3 344443333332221 2333222 1100
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
...++ | +.|+|++|||+|.....+.+-.....+=+-|+|
T Consensus 246 ~i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 246 AIVEL-T-DGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred HHHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 01111 2 238999999999887666554444333233444
No 211
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=78.96 E-value=3.5 Score=37.59 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
..||+|+|+|.+|+.+++.+.+.+ ++++...++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~~ 35 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG-LNVIVGLRK 35 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC-CeEEEEECc
Confidence 368999999999999999998764 676554443
No 212
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.80 E-value=3.6 Score=36.43 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCC---ceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~---~~ivaInd 35 (227)
.||+|+|+|.+|..+++.+.+.+. .+++.++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 489999999999999999886642 46666654
No 213
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=78.63 E-value=3.2 Score=37.13 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.7
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
|||++|+|++|..+++.+.+.+ +++...
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~v~ 29 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLHVT 29 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEEEE
Confidence 7999999999999999998774 666544
No 214
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=78.55 E-value=3.8 Score=32.85 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=26.7
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 6 IGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 6 VgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|.|.| +|.+|+.+++.|.+++ .+++++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecC
Confidence 67999 8999999999999886 999998864
No 215
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=78.50 E-value=2.8 Score=42.20 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=23.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.||+|+|.|.+|+.++..+....+++++ +.|+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~-l~d~ 336 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVR-IKDI 336 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEE-EEeC
Confidence 4799999999999998776543346654 3454
No 216
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.35 E-value=18 Score=34.18 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=24.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|.|+|.|.+|...++.|.+.+ .+++.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG-ARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999999999999888764 7766554
No 217
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.31 E-value=3.9 Score=36.19 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=25.7
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|...||+|+|.|.+|..++..+... +.+++.++
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~-G~~V~l~d 33 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFART-GYDVTIVD 33 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhc-CCeEEEEe
Confidence 4335899999999999999988776 46766553
No 218
>PRK06046 alanine dehydrogenase; Validated
Probab=78.28 E-value=3.6 Score=37.41 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=29.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+|+|+|+|..|+.+++++...++++.+.|.|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r 162 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR 162 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence 579999999999999999886667999999987
No 219
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.14 E-value=3.5 Score=36.91 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+||+|+|+|.+|+.+.+.+.+.+ .+|...+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~~~~ 34 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG-HRVRVWS 34 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC-CEEEEEe
Confidence 469999999999999999998764 6666554
No 220
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=77.99 E-value=4.6 Score=34.98 Aligned_cols=91 Identities=22% Similarity=0.155 Sum_probs=53.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
++++|.|+|.||..+.+.+...+ .|++-.+.. +++..+-+.+|- +. . |.- ...
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r--~~~~~~a~a~~l---------------~~-~------i~~--~~~ 54 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGSSR--GPKALAAAAAAL---------------GP-L------ITG--GSN 54 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEecCC--ChhHHHHHHHhh---------------cc-c------ccc--CCh
Confidence 59999999999999999887664 776655432 344443332221 10 1 111 111
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHh-CCCCEEEEeCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLK-GGAKKVIISAP 126 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~-~GakkVIisap 126 (227)
++-. ...|+||-+.+-.--.+-.+.+.+ -| .|+|||..
T Consensus 55 ~dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~t 93 (211)
T COG2085 55 EDAA----ALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDAT 93 (211)
T ss_pred HHHH----hcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecC
Confidence 2222 257999999876655555554443 23 46899765
No 221
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=77.77 E-value=3.2 Score=38.79 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=24.6
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
||+|+|+|.+|..++..+.+.+ .++++++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G-~~V~~~d 30 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLG-HEVTGVD 30 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcC-CeEEEEE
Confidence 8999999999999999988764 7776664
No 222
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=77.61 E-value=6.4 Score=36.01 Aligned_cols=148 Identities=13% Similarity=0.096 Sum_probs=73.5
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCCCc------eEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEE
Q 027137 3 KVKIGINGF-GRIGRLVARVILQRDDV------ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 75 (227)
Q Consensus 3 ~~kVgI~G~-GrIGr~~~r~l~~~~~~------~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~ 75 (227)
++||+|+|. |.+|..++..+...+-+ +++-+ |...+.+ .+.-...|-.|..+. ...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~-Di~~~~~-~a~g~a~Dl~~~~~~------------~~~~-- 66 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLL-DIPPAMK-ALEGVAMELEDCAFP------------LLAG-- 66 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEE-ecCCccc-ccchHHHHHhhcccc------------ccCC--
Confidence 589999997 99999988888765422 34333 3311110 011111233232211 0111
Q ss_pred EEEEeecCCCCCCCccCCccEEEeecCccc----CHHh------------HHHHHhCCC-CEEE--EeCCCCCCCeEEe-
Q 027137 76 VTVFGVRNPEEIPWAETGAEYVVESTGVFT----DKDK------------AAAHLKGGA-KKVI--ISAPSKDAPMFVV- 135 (227)
Q Consensus 76 I~v~~~~~p~~i~W~~~~vDiVve~tG~f~----~~~~------------a~~hl~~Ga-kkVI--isaps~d~p~~V~- 135 (227)
+++. ..+.+++. +.|+||-+.|.-. ++.. ++.-.+.+- +.++ +|+|- |.-+.+.
T Consensus 67 ~~i~-~~~~~~~~----daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv-Dv~t~v~~ 140 (323)
T TIGR01759 67 VVAT-TDPEEAFK----DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA-NTNALIAS 140 (323)
T ss_pred cEEe-cChHHHhC----CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH-HHHHHHHH
Confidence 2232 24456654 8999999998732 3321 111112222 2222 35552 2111111
Q ss_pred ccCccccCCCCcEEEcCChhhHhHHHHHHHHhhhcCeeEEEE
Q 027137 136 GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177 (227)
Q Consensus 136 gVN~~~~~~~~~IVSnaSCtTn~Lap~lk~L~~~fgI~~~~~ 177 (227)
..- ..| +.++||. . |+-=-+++=..|-+++|+.--.+
T Consensus 141 k~s-~g~-p~~rViG--~-t~LDs~R~r~~la~~l~v~~~~V 177 (323)
T TIGR01759 141 KNA-PDI-PPKNFSA--M-TRLDHNRAKYQLAAKAGVPVSDV 177 (323)
T ss_pred HHc-CCC-CHHHEEE--e-eHHHHHHHHHHHHHHhCcChHHe
Confidence 110 022 2457886 3 55556888899999999865444
No 223
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=77.44 E-value=4.1 Score=36.54 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=27.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+||-|-| .|.||+.+++.|.+.++.+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4899999 7999999999998765588888863
No 224
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=77.17 E-value=6.9 Score=35.33 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=72.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+||+|+|.|.+|..++..+...+..+ |.+.|...+...- . ..|-.+.. .. .. ..+ .|+. ..|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~-VvlvDi~~~l~~g-~--a~d~~~~~----~~---~~----~~~-~i~~--t~d 63 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELAD-LVLLDVVEGIPQG-K--ALDMYEAS----PV---GG----FDT-KVTG--TNN 63 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCe-EEEEeCCCChhHH-H--HHhhhhhh----hc---cC----CCc-EEEe--cCC
Confidence 59999999999999999887764336 4444543232221 1 11221110 00 00 111 2332 233
Q ss_pred CCCCCCccCCccEEEeecCccc----CH--------HhHHH----HHhCC--CCEEEEeCCCCCCCeEEeccCccccCCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFT----DK--------DKAAA----HLKGG--AKKVIISAPSKDAPMFVVGVNENEYKPE 145 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~----~~--------~~a~~----hl~~G--akkVIisaps~d~p~~V~gVN~~~~~~~ 145 (227)
.+++ .+.|+||-|.|.-. ++ +.... -.+.+ ++=+++|+|.+-.-.+++.. ..+ +.
T Consensus 64 ~~~~----~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~--sg~-~~ 136 (305)
T TIGR01763 64 YADT----ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQK--SGF-PK 136 (305)
T ss_pred HHHh----CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH--HCc-CH
Confidence 4444 37899999998532 11 11111 11122 22233477642111112111 112 23
Q ss_pred CcEEEcCChhhHhHHHHHHHHhhhcCeeEEE
Q 027137 146 LNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176 (227)
Q Consensus 146 ~~IVSnaSCtTn~Lap~lk~L~~~fgI~~~~ 176 (227)
.++| +.||.---+++-+.|.+.+++..-.
T Consensus 137 ~rvi--G~g~~lds~R~~~~la~~l~v~~~~ 165 (305)
T TIGR01763 137 ERVI--GQAGVLDSARFRTFIAMELGVSVQD 165 (305)
T ss_pred HHEE--EeccchHHHHHHHHHHHHhCcCHHH
Confidence 5666 3455666678888898988887443
No 225
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=77.06 E-value=6.9 Score=34.72 Aligned_cols=138 Identities=12% Similarity=0.191 Sum_probs=68.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~-ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
-+|.|+|.|.+|...++.+... +.+ ++++.. +.+....+.++ |- . ..++-+.-.. +
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~---~~~~~~~~~~~----ga-~-----------~~i~~~~~~~---~ 221 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARAL-GAEDVIGVDP---SPERLELAKAL----GA-D-----------FVINSGQDDV---Q 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEECC---CHHHHHHHHHh----CC-C-----------EEEcCCcchH---H
Confidence 3789999999999988877655 466 776643 23333222211 10 0 1111110000 0
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCccccCCCCcEEEcCChhhHhHHHH
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPL 162 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~~~~~~~~IVSnaSCtTn~Lap~ 162 (227)
...++. ...++|+||||+|.....+.+-..++.+.+-+++..++ + +.+.+ ....+..+..++..-.++...+..+
T Consensus 222 ~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~~~~--~~~~~~~~~~i~g~~~~~~~~~~~~ 296 (339)
T cd08239 222 EIRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGG-E-LTIEV--SNDLIRKQRTLIGSWYFSVPDMEEC 296 (339)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCC-C-cccCc--HHHHHhCCCEEEEEecCCHHHHHHH
Confidence 000000 01279999999997655555667777766433333222 2 11111 0112222344554444445567777
Q ss_pred HHHHhhh
Q 027137 163 AKVIHDK 169 (227)
Q Consensus 163 lk~L~~~ 169 (227)
++.+.+.
T Consensus 297 ~~~~~~g 303 (339)
T cd08239 297 AEFLARH 303 (339)
T ss_pred HHHHHcC
Confidence 7777653
No 226
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.02 E-value=21 Score=32.11 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=22.0
Q ss_pred cEEEEEccChHHHHHHHHHHc-CCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~-~~~~~ivaIn 34 (227)
-+|.|.|.|.||...++.+.. .+..+++++.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~ 196 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFG 196 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 378999999999987776654 3335565553
No 227
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=76.74 E-value=2 Score=39.61 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=24.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.-||.|+|.|-+|..+++.|...+ +.-+.|-|
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD 59 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG-VGHITIID 59 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 468999999999999999997664 43333444
No 228
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=76.73 E-value=3.9 Score=36.51 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.||+|+|+|.+|..+++.+.+.+ .++...+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~v~d 31 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQVFD 31 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEEEEc
Confidence 48999999999999999998764 6665443
No 229
>PRK07680 late competence protein ComER; Validated
Probab=76.63 E-value=5.4 Score=34.96 Aligned_cols=32 Identities=22% Similarity=0.519 Sum_probs=23.9
Q ss_pred EEEEEccChHHHHHHHHHHcCCCc--eEEEEeCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDV--ELVAVNDP 36 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~--~ivaInd~ 36 (227)
||+|+|+|.+|..+++.+.+.+.+ +-+.+.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 799999999999999998866422 22445554
No 230
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=76.55 E-value=44 Score=29.23 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=67.5
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~p 84 (227)
+|.|.|.|.+|..+++.+... +++++++.+.. +....+-++ |- . ..++. +.+
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~---~~~~~~~~~----g~------~------~~~~~--------~~~ 221 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQ-GAEVFAFTRSG---EHQELAREL----GA------D------WAGDS--------DDL 221 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEcCCh---HHHHHHHHh----CC------c------EEecc--------Ccc
Confidence 688999999999888766655 48887776542 222222111 10 0 11111 001
Q ss_pred CCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCccccCCCCcEEEcCChhhHhHHHHHH
Q 027137 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAK 164 (227)
Q Consensus 85 ~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~~~~~~~~IVSnaSCtTn~Lap~lk 164 (227)
.+.++|+++++++.....+.+..+++.|.. +++-+.... -+++++...+.....+...+.-....+..+++
T Consensus 222 -----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~-~v~~g~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (329)
T cd08298 222 -----PPEPLDAAIIFAPVGALVPAALRAVKKGGR-VVLAGIHMS---DIPAFDYELLWGEKTIRSVANLTRQDGEEFLK 292 (329)
T ss_pred -----CCCcccEEEEcCCcHHHHHHHHHHhhcCCE-EEEEcCCCC---CCCccchhhhhCceEEEEecCCCHHHHHHHHH
Confidence 123689999998877677888888887764 333222111 11233332222233344444444555666666
Q ss_pred HHhh
Q 027137 165 VIHD 168 (227)
Q Consensus 165 ~L~~ 168 (227)
.+.+
T Consensus 293 l~~~ 296 (329)
T cd08298 293 LAAE 296 (329)
T ss_pred HHHc
Confidence 5544
No 231
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=76.47 E-value=5.4 Score=35.67 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=28.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCC--ceEEEEeCCCcChhhhh
Q 027137 4 VKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT 44 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~--~~ivaInd~~~~~~~~a 44 (227)
+|||++|+|.+|+.++..+.+.+. -+-+-|.++ +.+...
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~ 42 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRA 42 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC--CHHHHH
Confidence 599999999999999999987762 234445555 444443
No 232
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=76.23 E-value=2 Score=39.98 Aligned_cols=112 Identities=14% Similarity=0.154 Sum_probs=55.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhccc-ccccCCCCcceEE----eCCCeEEECCEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD-SVHGQWKHHELKV----KDDKTLLFGEKPVT 77 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyD-S~~Gkf~~~~v~~----~~~~~l~i~gk~I~ 77 (227)
.-||.|+|.|-+|..+++.|...+--++.-+.+...++..+..-+-|+ +.-|+.+ .+.-. +-+..+.+....-.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~K-a~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPK-VEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHH-HHHHHHHHHHHCCCCeeEEeeee
Confidence 468999999999999999998764224444433323444443322232 1123322 11100 00011222211112
Q ss_pred EEeecCCCCCCCccCCccEEEeecCcccCHHhHH-HHHhCCCC
Q 027137 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAK 119 (227)
Q Consensus 78 v~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~-~hl~~Gak 119 (227)
+ +++++..--.+.|+|++|+..+.++.... ...+.|.+
T Consensus 120 i----~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 120 L----TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred c----CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 2 12222111137899999999987775433 23445654
No 233
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=75.93 E-value=5.6 Score=37.51 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=63.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhhhc-ccccccCCCCcceEEeCCC---eEE--EC--C
Q 027137 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDK---TLL--FG--E 73 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~-~~~ivaInd~~~~~~~~ayllk-yDS~~Gkf~~~~v~~~~~~---~l~--i~--g 73 (227)
.||+|.| +|-||...++.+...+ +|+++++..- .+.+.+..+.+ |.. .-+...+++ .+. .. |
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~-~n~~~L~~q~~~f~p-------~~v~i~d~~~~~~l~~~l~~~~ 73 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG-KNVALMVEQILEFRP-------KFVAIDDEASLKDLKTMLQQQG 73 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHHHHcCC-------CEEEEcCHHHHHHHHHHhhcCC
Confidence 4899999 9999999999887654 5999999764 35655554432 221 111111110 000 01 2
Q ss_pred EEEEEEeecC-CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeC
Q 027137 74 KPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (227)
Q Consensus 74 k~I~v~~~~~-p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisa 125 (227)
..++++...+ ..++- ....+|+|+-+.-.+....-.-..+++| |++-+.+
T Consensus 74 ~~~~v~~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 124 (389)
T TIGR00243 74 SRTEVLVGEEGICEMA-ALEDVDQVMNAIVGAAGLLPTLAAIRAG-KTIALAN 124 (389)
T ss_pred CCcEEEECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 1234433221 11110 1126899999886666666666778888 5565654
No 234
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.92 E-value=5 Score=35.71 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=24.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.||+|+|.|.+|..++..+... +.+++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-GLQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-CCeEEEEE
Confidence 5899999999999999988765 47766654
No 235
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=75.87 E-value=4.8 Score=33.39 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=22.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
||+|+|.|.+|+.++..+... +++++-+ |+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~-d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLY-DR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE--S
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEE-EC
Confidence 799999999999998887776 4775544 44
No 236
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=75.78 E-value=14 Score=37.70 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=25.5
Q ss_pred CCcc-EEEEEccChHHHHH-HHHHHcCCCceEEEEeCC
Q 027137 1 MGKV-KIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36 (227)
Q Consensus 1 m~~~-kVgI~G~GrIGr~~-~r~l~~~~~~~ivaInd~ 36 (227)
||++ +|.|+|.|..|... ++.|.+.+ .++. +.|.
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G-~~V~-~sD~ 36 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG-YSVS-GSDL 36 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC-CeEE-EECC
Confidence 6544 59999999999987 78777764 6654 5664
No 237
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=75.72 E-value=39 Score=27.41 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=24.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.||-|+|-|.+|...++.|.+.+ .+++-|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 68999999999999999988764 6666663
No 238
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=75.36 E-value=4.8 Score=38.79 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=25.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+||||+|.|.+|..++..+... +++++. .|+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~-G~~V~v-~D~ 35 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA-GIDVAV-FDP 35 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC-CCeEEE-EeC
Confidence 35899999999999999988876 477654 454
No 239
>PRK07877 hypothetical protein; Provisional
Probab=74.96 E-value=1.7 Score=44.09 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=57.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCC-ceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECC-EEEEEEe
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFG 80 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~-~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~g-k~I~v~~ 80 (227)
.-||+|+|.| +|-.++..|...+- -+|.-+..-..++.++-..+-..+.-|+.+ .++-. ..-..+|- -.|..+.
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~K-v~~a~--~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNK-AVVAA--RRIAELDPYLPVEVFT 182 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHH-HHHHH--HHHHHHCCCCEEEEEe
Confidence 3689999999 89999988876542 133333222223333323221112235433 11110 11012231 2333333
Q ss_pred ec-CCCCCCCccCCccEEEeecCcccCHHhHH-HHHhCCCCEEEEeCC
Q 027137 81 VR-NPEEIPWAETGAEYVVESTGVFTDKDKAA-AHLKGGAKKVIISAP 126 (227)
Q Consensus 81 ~~-~p~~i~W~~~~vDiVve~tG~f~~~~~a~-~hl~~GakkVIisap 126 (227)
+. ++++++=--.++|+||||+..|.++-... ...+.|.+ +|++.
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP--~i~~~ 228 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIP--VLMAT 228 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCC--EEEEc
Confidence 21 23333210137999999999987764333 33445654 44444
No 240
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.86 E-value=7.5 Score=35.49 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.8
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCC
Q 027137 4 VKIGINGF-GRIGRLVARVILQRD 26 (227)
Q Consensus 4 ~kVgI~G~-GrIGr~~~r~l~~~~ 26 (227)
.||+|+|. |.||..++..+...+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999997 999999998887654
No 241
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=74.63 E-value=4.8 Score=38.95 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=24.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
.+|+|+|+|+||+.+++.+...+ .+++.+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G-a~ViV~ 283 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG-ARVVVT 283 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999999999999987664 675554
No 242
>PRK14851 hypothetical protein; Provisional
Probab=74.24 E-value=2.7 Score=42.33 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=49.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhhhcc-cccccCCCCcceEEeCCCeEEECC-EEEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKY-DSVHGQWKHHELKVKDDKTLLFGE-KPVTVF 79 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~-~~~~~~~ayllky-DS~~Gkf~~~~v~~~~~~~l~i~g-k~I~v~ 79 (227)
.-||+|+|.|=+|-.++..|...+ +.=..|.|. ..++..+...+-| .+.-|+.+ .++-. ..-..+|- -.|..+
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~G-VG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~K-v~v~~--~~l~~inP~~~I~~~ 118 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTG-IGRFHIADFDQFEPVNVNRQFGARVPSFGRPK-LAVMK--EQALSINPFLEITPF 118 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhC-CCeEEEEcCCEecccccccCcCcChhhCCCHH-HHHHH--HHHHHhCCCCeEEEE
Confidence 368999999999999999887654 322233332 1233333322212 22335543 22211 11012331 234444
Q ss_pred eec-CCCCCCCccCCccEEEeecCcc
Q 027137 80 GVR-NPEEIPWAETGAEYVVESTGVF 104 (227)
Q Consensus 80 ~~~-~p~~i~W~~~~vDiVve~tG~f 104 (227)
.+. ++++++.--.++|+||||+..|
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFF 144 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCC
Confidence 322 2333321113899999999865
No 243
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=74.13 E-value=8.8 Score=30.06 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=25.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
..+|+|+|.|.+|+.+++.+.+.+ ...+.+.|.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r 51 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNR 51 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 368999999999999999998764 444445454
No 244
>PLN02427 UDP-apiose/xylose synthase
Probab=73.87 E-value=5.6 Score=36.33 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=28.2
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
++||-|.| .|.||+.+++.|.++++.+|+++..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 46899999 8999999999999875578888864
No 245
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=73.52 E-value=6.4 Score=37.08 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.0
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCC
Q 027137 3 KVKIGINGF-GRIGRLVARVILQRD 26 (227)
Q Consensus 3 ~~kVgI~G~-GrIGr~~~r~l~~~~ 26 (227)
++||+|+|. |++|..++..+...+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 589999997 999999999887654
No 246
>PRK08219 short chain dehydrogenase; Provisional
Probab=73.28 E-value=5.9 Score=32.59 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=26.6
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 1 m~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
||+.++-|.| .|.+|+.+++.+.++ .+++++..
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 5556899999 899999999998876 67776654
No 247
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.08 E-value=5.7 Score=37.08 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=26.5
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|+..||.|+|+|.+|+.+++.+.+.+ .++++..
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G-~~V~g~D 33 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKG-VYVIGVD 33 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCC-CEEEEEe
Confidence 66678999999999999999888775 5655543
No 248
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=72.91 E-value=10 Score=30.48 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=52.3
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~p 84 (227)
||+|+|.|..|..++..+.+.+ .+ |-+-.. +.+.+..+-+... .-++. ..++ +.. .+.+. .|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~-V~l~~~--~~~~~~~i~~~~~-n~~~~-~~~~--------l~~-~i~~t--~dl 63 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HE-VTLWGR--DEEQIEEINETRQ-NPKYL-PGIK--------LPE-NIKAT--TDL 63 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EE-EEEETS--CHHHHHHHHHHTS-ETTTS-TTSB--------EET-TEEEE--SSH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CE-EEEEec--cHHHHHHHHHhCC-CCCCC-CCcc--------cCc-ccccc--cCH
Confidence 7999999999999988887775 33 233333 4455444432211 11111 1111 111 23332 444
Q ss_pred CCCCCccCCccEEEeecCcccCHHhHHH---HHhCCCCEEEEeCC
Q 027137 85 EEIPWAETGAEYVVESTGVFTDKDKAAA---HLKGGAKKVIISAP 126 (227)
Q Consensus 85 ~~i~W~~~~vDiVve~tG~f~~~~~a~~---hl~~GakkVIisap 126 (227)
++.- .+.|+++-+++.+--++.... |++.+. .+|+.+
T Consensus 64 ~~a~---~~ad~IiiavPs~~~~~~~~~l~~~l~~~~--~ii~~~ 103 (157)
T PF01210_consen 64 EEAL---EDADIIIIAVPSQAHREVLEQLAPYLKKGQ--IIISAT 103 (157)
T ss_dssp HHHH---TT-SEEEE-S-GGGHHHHHHHHTTTSHTT---EEEETS
T ss_pred HHHh---CcccEEEecccHHHHHHHHHHHhhccCCCC--EEEEec
Confidence 3321 378999999999877655543 344454 566655
No 249
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=72.85 E-value=5.7 Score=35.55 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=24.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+||+|+|.|.+|..++..+.+. +.+++..+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-G~~V~v~d 32 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-GHEVRLWD 32 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-CCeeEEEe
Confidence 4899999999999999988877 46766554
No 250
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.67 E-value=6.9 Score=34.62 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
|...||+|+|.|.+|..++..+... +.+++.+
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~-G~~V~l~ 32 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFH-GFDVTIY 32 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhc-CCeEEEE
Confidence 4346899999999999999888765 3665544
No 251
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=72.60 E-value=37 Score=29.60 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=52.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
-+|.|.|.|.+|..+++.+... +++++++.. +.+...++.++.. + ..++- ++
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~---~~~~~~~~~~~g~--------~--------~~~~~--------~~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALT-GPDVVLVGR---HSEKLALARRLGV--------E--------TVLPD--------EA 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEcC---CHHHHHHHHHcCC--------c--------EEeCc--------cc
Confidence 3688999999999988877666 477766643 2344444432211 0 01110 00
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
. .++ .++|+++||+|.-...+.+..+++.+.+ +++
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~-~v~ 243 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGT-VVL 243 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE-EEE
Confidence 0 123 2799999999875455666777877654 443
No 252
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=72.53 E-value=18 Score=32.65 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=52.4
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
+-||-|.| +|.+|+.+++++.+.+.-.+..||-.. . |+. +.|.+ .+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~-~---------~~~-------------------v~G~~--~y-- 54 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGK-G---------GTT-------------------VLGLP--VF-- 54 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCC-C---------CCe-------------------EeCee--cc--
Confidence 46899999 899999999999875422443555210 0 111 11211 11
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
++.+++|=.. ++|+++-+++.....+..+...++|+|.+||
T Consensus 55 ~sv~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 55 NTVAEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred CCHHHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 2334444100 2788888888777777777777788877554
No 253
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.27 E-value=27 Score=32.64 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=25.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
..+|.|+|.|++|..+++.+.+.+ .+++.+ |.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~-d~ 36 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG-AKVILT-DE 36 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC
Confidence 468999999999999999998875 675544 44
No 254
>PRK06444 prephenate dehydrogenase; Provisional
Probab=72.18 E-value=6.9 Score=33.31 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=18.5
Q ss_pred cEEEEEc-cChHHHHHHHHHHcC
Q 027137 4 VKIGING-FGRIGRLVARVILQR 25 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~ 25 (227)
+||+|+| .|++|+.+.+.+.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~ 23 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN 23 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC
Confidence 4899999 799999988877654
No 255
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=71.97 E-value=6.1 Score=35.64 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=24.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
..+|+|+|+|.+|+.+++.+...+ ..-+.+.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKG-VAEITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 368999999999999999987643 333444444
No 256
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=71.70 E-value=5.2 Score=37.35 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=21.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
..+||+||||||+.+++.+.... +.++.-
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~g-m~vI~~ 175 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMG-MHVIGY 175 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcC-ceEEee
Confidence 35899999999999998876543 554443
No 257
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=71.49 E-value=20 Score=32.52 Aligned_cols=30 Identities=13% Similarity=0.493 Sum_probs=23.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+|.|.|.|.+|...++.+... +.+++++.+
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAF-GLKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 688999999999988877655 467766543
No 258
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.48 E-value=6.1 Score=36.81 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+|.|+|+|++|+.+++.|.+. +.+++.|.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid 30 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVID 30 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEE
Confidence 899999999999999988776 47888775
No 259
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=71.29 E-value=5.8 Score=36.84 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=24.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.||+|+| +|.+|..+.+.+.+.+ .++..++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d 129 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSG-YQVRILE 129 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCC-CeEEEeC
Confidence 6899999 9999999999998764 5544443
No 260
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=71.28 E-value=6.8 Score=35.19 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.|+.|+|+|++|+.+++.+...+ .++..++.
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r 183 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-ANVTVGAR 183 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence 58999999999999999988764 66666543
No 261
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.19 E-value=34 Score=31.96 Aligned_cols=104 Identities=25% Similarity=0.279 Sum_probs=56.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
.+|.|+|+|..|+..++.|.+.+ .++.+ .|.......... +. .|-.+.. ...+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G-~~v~~-~D~~~~~~~~~~-----------------------l~-~g~~~~~-~~~~ 59 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG-VTPRV-IDTRITPPGLDK-----------------------LP-ENVERHT-GSLN 59 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CeEEE-EcCCCCchhHHH-----------------------Hh-cCCEEEe-CCCC
Confidence 47999999999999998776664 66554 453111100000 10 0111111 1122
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-----CCCC-eEEeccCcc
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-----KDAP-MFVVGVNEN 140 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-----~d~p-~~V~gVN~~ 140 (227)
+..++ +.|+||-+.|.-.+.+......+.|++ |++-+. .+.| .-|-|-|.+
T Consensus 60 ~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~~~el~~~~~~~~~I~VTGTnGK 116 (438)
T PRK03806 60 DEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVGDIELFCREAQAPIVAITGSNGK 116 (438)
T ss_pred HHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEEHHHHHhhhcCCCEEEEeCCCCH
Confidence 22222 468888888887666666677778874 454321 1234 235666654
No 262
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=70.99 E-value=7.1 Score=34.17 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=23.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+||+|+|.|.+|..++..+.+.+ .+++.+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence 38999999999999998887653 5665554
No 263
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.86 E-value=11 Score=34.97 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=54.0
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEE--EEEeec
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV--TVFGVR 82 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I--~v~~~~ 82 (227)
.++|.|+|-+|-.+++-+...+--+|.+|. . +.+.. ++.-..|- +=.+|-+.. .+ +|.
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvD-i--N~~Kf----~~ak~fGa------------Te~iNp~d~~~~i-~ev 254 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVD-I--NPDKF----EKAKEFGA------------TEFINPKDLKKPI-QEV 254 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEEe-c--CHHHH----HHHHhcCc------------ceecChhhccccH-HHH
Confidence 589999999999998888777667888873 2 22222 22222221 111222100 11 111
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCC-CEEEE
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA-KKVII 123 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Ga-kkVIi 123 (227)
..+ -.+.|+||-|||+|.-..+..|-..-..|- +-|+|
T Consensus 255 -i~E--mTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 255 -IIE--MTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred -HHH--HhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 011 123599999999999877765544444442 33555
No 264
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=70.62 E-value=5.8 Score=37.12 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=27.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhh
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMF 47 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayll 47 (227)
||+|+|+|.+|..++..+. . +.++++++- +.+.+.-+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~-G~~VigvD~---d~~kv~~l~ 39 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-Q-NHEVVALDI---LPSRVAMLN 39 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-h-CCcEEEEEC---CHHHHHHHH
Confidence 8999999999999885544 4 588777753 455554443
No 265
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=70.37 E-value=5.8 Score=36.42 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=26.5
Q ss_pred CCccEEEEEccChHHHHHHHHHHc------CCCceEEEEeCC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQ------RDDVELVAVNDP 36 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~------~~~~~ivaInd~ 36 (227)
|+++||+|+|.|.||-.-+..+.+ .|..++..+.|.
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 567899999999999876655544 345666667664
No 266
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=70.30 E-value=4.2 Score=36.16 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=60.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe--CCC-cChhhhhhhhcccccccCCCCcceEEe----CCCeEEECCEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN--DPF-ITTDYMTYMFKYDSVHGQWKHHELKVK----DDKTLLFGEKPV 76 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn--d~~-~~~~~~ayllkyDS~~Gkf~~~~v~~~----~~~~l~i~gk~I 76 (227)
-+|.|+|.|=+|...+++|...+=-+|+-|. |.. .+.+...|.+ -++.|+-+ -++..+ -+-...+.....
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~--~~~iGk~K-v~vm~eri~~InP~c~V~~~~~ 107 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHAL--LGDIGKPK-VEVMKERIKQINPECEVTAIND 107 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhh--hhhcccHH-HHHHHHHHHhhCCCceEeehHh
Confidence 3699999999999999999876411222221 111 1233333333 22345532 111110 000112221111
Q ss_pred EEEeecCCCCCCCccCCccEEEeecCcccCHHhHHHHH-hCCCCEEEEeCCCC--CCCeEE
Q 027137 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL-KGGAKKVIISAPSK--DAPMFV 134 (227)
Q Consensus 77 ~v~~~~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl-~~GakkVIisaps~--d~p~~V 134 (227)
.+ .+.+.+++-. .+.|||+||......+-..-.+. +.+. +||-|..+. -+|+-+
T Consensus 108 f~-t~en~~~~~~--~~~DyvIDaiD~v~~Kv~Li~~c~~~ki-~vIss~Gag~k~DPTri 164 (263)
T COG1179 108 FI-TEENLEDLLS--KGFDYVIDAIDSVRAKVALIAYCRRNKI-PVISSMGAGGKLDPTRI 164 (263)
T ss_pred hh-CHhHHHHHhc--CCCCEEEEchhhhHHHHHHHHHHHHcCC-CEEeeccccCCCCCceE
Confidence 12 2223344433 38999999998877764443333 3344 355555442 256543
No 267
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=70.28 E-value=5.9 Score=38.14 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|+|.+|..+++++.+.+ ++|...|
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~v~d 31 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKISVYN 31 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEEEEe
Confidence 48999999999999999998874 7765554
No 268
>PRK06153 hypothetical protein; Provisional
Probab=70.07 E-value=3.1 Score=39.25 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=25.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.||+|+|.|=+|-.++..|...+--+|+-|-
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD 207 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFD 207 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEEC
Confidence 5899999999999999999877644555554
No 269
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=70.07 E-value=5 Score=35.91 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=31.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhccc
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD 50 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyD 50 (227)
+++|++|+||+|..+.+.+.+.. -++|+- |. +.+....+-++.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~y-D~--n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGY-DV--NQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEE-cC--CHHHHHHHHhcC
Confidence 48999999999999999998774 777765 33 455555554443
No 270
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=69.99 E-value=9.4 Score=34.06 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=21.3
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 6 VgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|+|+|.|.+|..++..+...+-.+++-+ |.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~-Di 30 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLL-DI 30 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEE-eC
Confidence 6899999999998887765431265444 55
No 271
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.98 E-value=6.2 Score=39.90 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=23.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
-||+|+|.|.+|+-++..+... +++++-+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~ 342 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMK 342 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CCeEEEE
Confidence 4799999999999998877765 4775544
No 272
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.85 E-value=7.2 Score=34.45 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=27.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhh
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTY 45 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ay 45 (227)
-||+|+|.|.+|+.++..+.+. +.+++.+ |. +.+.+..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G~~V~~~-d~--~~~~~~~ 39 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-GFQTTLV-DI--KQEQLES 39 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-CCcEEEE-eC--CHHHHHH
Confidence 4899999999999999988866 4666555 43 4444433
No 273
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=69.54 E-value=15 Score=33.29 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=48.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCc-eEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~-~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+|.|+|.|.+|...++.+... +. +++++. . +.+.+..+.++ |- + ..++.+.-... +.
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~-~--~~~r~~~a~~~----Ga----~--------~~i~~~~~~~~--~~ 251 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAA-GASQVVAVD-L--NEDKLALAREL----GA----T--------ATVNAGDPNAV--EQ 251 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCcEEEEc-C--CHHHHHHHHHc----CC----c--------eEeCCCchhHH--HH
Confidence 689999999999888777655 45 466553 2 33443333211 10 0 11111000000 00
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
..++. ..++|+||||+|.-.+.+.+-..++.|-+
T Consensus 252 i~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~ 285 (371)
T cd08281 252 VRELT--GGGVDYAFEMAGSVPALETAYEITRRGGT 285 (371)
T ss_pred HHHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCE
Confidence 00111 12689999999976566666677776654
No 274
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=69.51 E-value=7.1 Score=32.56 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+|+|+|||.-|+.+..+|.+++ ++++--..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr 35 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSG-VNVIVGLR 35 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CEEEEECCChHHHHHHHHHHhCC-CCEEEEec
Confidence 58999999999999999999885 77664433
No 275
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=69.36 E-value=7.4 Score=37.02 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=25.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.|+-|+|.|-+|+.+++.|.+.+--+|.-+|-
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 47999999999999999999886445444554
No 276
>PRK08328 hypothetical protein; Provisional
Probab=69.19 E-value=4.8 Score=34.84 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=24.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.-||.|+|.|-+|..+++.|...+ +.-+.|-|.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~ 59 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDE 59 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 358999999999999999998664 433334453
No 277
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=69.12 E-value=1.6 Score=40.78 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=25.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.-||.|+|.|-+|..++..|...+ +.-+.|.|.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~G-vg~i~lvD~ 74 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAG-VGTLGIVEF 74 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC-CCeEEEECC
Confidence 468999999999999999997654 444444443
No 278
>PRK06988 putative formyltransferase; Provisional
Probab=69.06 E-value=7.8 Score=35.16 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=27.0
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|| +||.+.|.+.+|...++.|.+.+ +++++|-
T Consensus 1 ~~-mkIvf~Gs~~~a~~~L~~L~~~~-~~i~~Vv 32 (312)
T PRK06988 1 MK-PRAVVFAYHNVGVRCLQVLLARG-VDVALVV 32 (312)
T ss_pred CC-cEEEEEeCcHHHHHHHHHHHhCC-CCEEEEE
Confidence 54 79999999999999999998764 7777664
No 279
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.97 E-value=8.1 Score=38.18 Aligned_cols=39 Identities=21% Similarity=0.544 Sum_probs=30.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhh
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYM 46 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayl 46 (227)
.+|-|.|+||+|+.+.|.+.+. +.+++.|.. |++....+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~---d~~~v~~~ 439 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN-KMRITVLER---DISAVNLM 439 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC-CCCEEEEEC---CHHHHHHH
Confidence 4789999999999999998866 478888853 55555443
No 280
>PLN02494 adenosylhomocysteinase
Probab=68.91 E-value=7.6 Score=37.58 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=24.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|+|+|+|.||+.+++.+... +.+|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~-Ga~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA-GARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 5799999999999999998766 46766654
No 281
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=68.87 E-value=6.4 Score=39.84 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=24.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
-||+|+|.|.+|..++..+... +++++-+ |.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~-d~ 344 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-GTPIVMK-DI 344 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-CCeEEEE-eC
Confidence 4799999999999998887766 5775544 44
No 282
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=68.81 E-value=7.2 Score=36.59 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=33.4
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCC-CceEEEEeCCCcChhhhhhh
Q 027137 4 VKIGING-FGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYM 46 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~-~~~ivaInd~~~~~~~~ayl 46 (227)
.|+.|.| +|-||..-++.+.+.| .|+++++.-- ..++.+.-.
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag-~n~~~l~~q 45 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAG-KNVELLAEQ 45 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecC-CcHHHHHHH
Confidence 5899999 9999999999998776 4999999864 355555443
No 283
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.39 E-value=7.7 Score=36.76 Aligned_cols=30 Identities=13% Similarity=0.270 Sum_probs=24.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|+|+|+|.||+.+++.+... +.+++++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM-GARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-cCEEEEEe
Confidence 5899999999999999988765 47766653
No 284
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=68.31 E-value=3 Score=41.82 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
..||.|+|.|-+|-.+++.|...+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC
Confidence 468999999999999999998775
No 285
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=68.26 E-value=12 Score=29.01 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=52.5
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccc-cccCCCCcceEEeCCCeE-EEC-CEEEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDS-VHGQWKHHELKVKDDKTL-LFG-EKPVTVF 79 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS-~~Gkf~~~~v~~~~~~~l-~i~-gk~I~v~ 79 (227)
..||.|+|.|.+|..+++.|...+--++.-+.+-..+++.+..-+-|.+ .-|+.+ .+.-. . .| .+| +-.+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~K-a~~~~--~-~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNK-AEAAK--E-RLQEINPDVEVEAI 77 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBH-HHHHH--H-HHHHHSTTSEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHH-HHHHH--H-HHHHhcCceeeeee
Confidence 3589999999999999999986642234334333345566554332332 224432 11100 0 01 111 2223332
Q ss_pred eecC-CCCCCCcc-CCccEEEeecCcccCHHhHHHH
Q 027137 80 GVRN-PEEIPWAE-TGAEYVVESTGVFTDKDKAAAH 113 (227)
Q Consensus 80 ~~~~-p~~i~W~~-~~vDiVve~tG~f~~~~~a~~h 113 (227)
...- .+++ +.. .+.|+||+|+..+..+......
T Consensus 78 ~~~~~~~~~-~~~~~~~d~vi~~~d~~~~~~~l~~~ 112 (135)
T PF00899_consen 78 PEKIDEENI-EELLKDYDIVIDCVDSLAARLLLNEI 112 (135)
T ss_dssp ESHCSHHHH-HHHHHTSSEEEEESSSHHHHHHHHHH
T ss_pred ecccccccc-cccccCCCEEEEecCCHHHHHHHHHH
Confidence 2211 1111 111 2789999999887665544433
No 286
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.22 E-value=38 Score=32.30 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=24.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.||+|.|+|+-|+..++.|.+.+ .+++ +.|.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g-~~v~-~~d~ 39 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL-PAQA-LTLF 39 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC-CEEE-EEcC
Confidence 48999999999999999988764 6643 3553
No 287
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.22 E-value=8.6 Score=34.66 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|||+|+|.|.+|..++..+...+-..-+.+-|.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 389999999999999998887653333344444
No 288
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=68.16 E-value=52 Score=27.88 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.||.|+|-|.+|..-++.+.+.+ .+++.|.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG-AQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CEEEEEc
Confidence 58999999999999889888764 5655554
No 289
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=67.99 E-value=4.2 Score=41.34 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=27.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhh
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMT 44 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~a 44 (227)
-||+|+|.|.+|..++..+... +++++-+ |. +.+.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~-d~--~~~~l~ 372 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLK-DA--TPAGLD 372 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CCcEEEe-cC--CHHHHH
Confidence 4799999999999998887766 5776544 54 444443
No 290
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=67.83 E-value=14 Score=35.52 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.3
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcC
Q 027137 3 KVKIGINGF-GRIGRLVARVILQR 25 (227)
Q Consensus 3 ~~kVgI~G~-GrIGr~~~r~l~~~ 25 (227)
.+||+|+|. |.||..++..+...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 589999998 99999999888765
No 291
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=67.43 E-value=38 Score=31.43 Aligned_cols=131 Identities=15% Similarity=0.245 Sum_probs=73.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
-+|+|.|+|=+|...++.+.... .+++|+.-. .+.+....+. |-...++.+ +
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~---~~K~e~a~~l----------------GAd~~i~~~--------~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRS---EEKLELAKKL----------------GADHVINSS--------D 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCC---hHHHHHHHHh----------------CCcEEEEcC--------C
Confidence 47999999988887777666554 899998653 2222111111 111333321 1
Q ss_pred CCCCC-CccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC-CCCCeEEeccCcc-ccCCCCcEEEcCChhhHhHH
Q 027137 84 PEEIP-WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLA 160 (227)
Q Consensus 84 p~~i~-W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps-~d~p~~V~gVN~~-~~~~~~~IVSnaSCtTn~La 160 (227)
++.++ ..+ -+|+++++.+ ..+.+.+-..++.|=+-|++-.|. .+.|.+ +.. ..-.+..|+.+..=|-.=+-
T Consensus 220 ~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~----~~~~li~~~~~i~GS~~g~~~d~~ 293 (339)
T COG1064 220 SDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLL----PAFLLILKEISIVGSLVGTRADLE 293 (339)
T ss_pred chhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCC----CHHHhhhcCeEEEEEecCCHHHHH
Confidence 11111 111 2899999999 888888888888776555555553 221211 111 11123456666666666566
Q ss_pred HHHHHHhh
Q 027137 161 PLAKVIHD 168 (227)
Q Consensus 161 p~lk~L~~ 168 (227)
-+++...+
T Consensus 294 e~l~f~~~ 301 (339)
T COG1064 294 EALDFAAE 301 (339)
T ss_pred HHHHHHHh
Confidence 66665554
No 292
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=67.16 E-value=44 Score=32.65 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=24.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
-||.|+|.|.+|...++.+...+ .+++ +.|.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~V~-a~D~ 196 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLG-AIVR-AFDT 196 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEE-EEeC
Confidence 68999999999999888887664 5544 4454
No 293
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=67.00 E-value=33 Score=31.91 Aligned_cols=30 Identities=43% Similarity=0.660 Sum_probs=23.6
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
||.|+|.|.+|+.+++.|.+.+ .++ .++|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V-~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEV-TVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEE-EEEeC
Confidence 5889999999999999888774 664 45664
No 294
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=66.64 E-value=71 Score=28.54 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=67.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEE---EEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT---VFG 80 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~---v~~ 80 (227)
-+|.|.|.|.+|...++.+...+ .+++++.. +.+.+..+.++ |- . ..++-+... +..
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G-~~vi~~~~---~~~~~~~~~~~----Ga-~-----------~~i~~~~~~~~~~~~ 227 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG-AAVVAIDI---DPEKLEMMKGF----GA-D-----------LTLNPKDKSAREVKK 227 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEcC---CHHHHHHHHHh----CC-c-----------eEecCccccHHHHHH
Confidence 36899999999999888777664 67766633 33444333221 10 0 111110000 000
Q ss_pred ecCCCCCCCccCCc----cEEEeecCcccCHHhHHHHHhCCCCEEEEeC-CCCCCCeEEeccCcc-ccCCCCcEEEcCCh
Q 027137 81 VRNPEEIPWAETGA----EYVVESTGVFTDKDKAAAHLKGGAKKVIISA-PSKDAPMFVVGVNEN-EYKPELNIVSNASC 154 (227)
Q Consensus 81 ~~~p~~i~W~~~~v----DiVve~tG~f~~~~~a~~hl~~GakkVIisa-ps~d~p~~V~gVN~~-~~~~~~~IVSnaSC 154 (227)
...++ ....++ |+||||+|.-...+.+-..++.|-+ +++-+ ++...+ ++.. .+.....++.+-.+
T Consensus 228 --~~~~~-t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~-iv~~G~~~~~~~-----~~~~~~~~~~~~~~g~~~~ 298 (349)
T TIGR03201 228 --LIKAF-AKARGLRSTGWKIFECSGSKPGQESALSLLSHGGT-LVVVGYTMAKTE-----YRLSNLMAFHARALGNWGC 298 (349)
T ss_pred --HHHhh-cccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCe-EEEECcCCCCcc-----cCHHHHhhcccEEEEEecC
Confidence 00000 011244 4899999976555666677777753 44433 222111 1111 12122345555445
Q ss_pred hhHhHHHHHHHHhh
Q 027137 155 TTNCLAPLAKVIHD 168 (227)
Q Consensus 155 tTn~Lap~lk~L~~ 168 (227)
+...+..+++.+.+
T Consensus 299 ~~~~~~~~~~~i~~ 312 (349)
T TIGR03201 299 PPDRYPAALDLVLD 312 (349)
T ss_pred CHHHHHHHHHHHHc
Confidence 55566677777765
No 295
>PRK08618 ornithine cyclodeaminase; Validated
Probab=66.63 E-value=12 Score=34.01 Aligned_cols=90 Identities=21% Similarity=0.197 Sum_probs=53.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhc-ccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK-YDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllk-yDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
.+++|+|.|.+|+.+++++....+++-+.|.+. +++....+.+ +.. +|. + .+..+ .
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r--~~~~a~~~~~~~~~---~~~-----------~-----~~~~~--~ 184 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR--TFEKAYAFAQEIQS---KFN-----------T-----EIYVV--N 184 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC--CHHHHHHHHHHHHH---hcC-----------C-----cEEEe--C
Confidence 479999999999999988865556888888876 4444332221 000 000 0 11111 2
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
++++.- .+.|+|+-||+... .... ..++.|+ .|+
T Consensus 185 ~~~~~~---~~aDiVi~aT~s~~-p~i~-~~l~~G~--hV~ 218 (325)
T PRK08618 185 SADEAI---EEADIIVTVTNAKT-PVFS-EKLKKGV--HIN 218 (325)
T ss_pred CHHHHH---hcCCEEEEccCCCC-cchH-HhcCCCc--EEE
Confidence 222111 26899999998763 3334 6777887 444
No 296
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=66.62 E-value=9.4 Score=37.96 Aligned_cols=39 Identities=28% Similarity=0.642 Sum_probs=29.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhh
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYM 46 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayl 46 (227)
.+|-|.|+||+|+.+.|.+.+. +++++.|.. |++....+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~---d~~~v~~~ 439 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDH---DPDHIETL 439 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC-CCCEEEEEC---CHHHHHHH
Confidence 4688999999999999999876 488888842 55554333
No 297
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.29 E-value=45 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=24.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.||.|+|+|..|+.+++.|...+ .++.+ .|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G-~~v~~-~D~ 38 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG-ARLRV-ADT 38 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC-CEEEE-EcC
Confidence 47999999999999989888775 66554 554
No 298
>PRK06545 prephenate dehydrogenase; Validated
Probab=66.05 E-value=8.5 Score=35.39 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEEccChHHHHHHHHHHcCC
Q 027137 5 KIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
||+|+|+|.||..+++.+.+.+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G 23 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG 23 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC
Confidence 7999999999999999998664
No 299
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.90 E-value=41 Score=32.06 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=24.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.||.|.|+|..|+.+++.+.+.+ .++ .+.|.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~ 46 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG-CDV-VVADD 46 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC-CEE-EEECC
Confidence 47999999999999999988775 554 44553
No 300
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=65.63 E-value=6.6 Score=38.11 Aligned_cols=129 Identities=13% Similarity=0.229 Sum_probs=66.7
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhc-ccccccC----CCCcce-EEeCC---CeEEE--
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFK-YDSVHGQ----WKHHEL-KVKDD---KTLLF-- 71 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllk-yDS~~Gk----f~~~~v-~~~~~---~~l~i-- 71 (227)
+.+||++|+|.+|+.+++++.+.+ ++++.-| . +.+...-+.+ ... .|. .. .++ ++.+. ..+++
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G-~~V~V~N-R--t~~k~~~l~~~~~~-~Ga~~~~~a-~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKG-FPISVYN-R--TTSKVDETVERAKK-EGNLPLYGF-KDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCC-CeEEEEC-C--CHHHHHHHHHhhhh-cCCcccccC-CCHHHHHhcCCCCCEEEEE
Confidence 368999999999999999999874 8866554 3 2333222221 000 010 00 000 00000 00111
Q ss_pred --CCEEEE-EEeecCCCCCCCccCCccEEEeecCcc--cCHHhHHHHHhCCCCEEEEeCCC-------CCCCeEEeccCc
Q 027137 72 --GEKPVT-VFGVRNPEEIPWAETGAEYVVESTGVF--TDKDKAAAHLKGGAKKVIISAPS-------KDAPMFVVGVNE 139 (227)
Q Consensus 72 --~gk~I~-v~~~~~p~~i~W~~~~vDiVve~tG~f--~~~~~a~~hl~~GakkVIisaps-------~d~p~~V~gVN~ 139 (227)
+++.+. |+.. -++-- ..-|++||++-.. .+++.+....+.|+ -.+++|- ..-|++.+|=+.
T Consensus 80 v~~~~aV~~Vi~g----l~~~l-~~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~ 152 (493)
T PLN02350 80 VKAGAPVDQTIKA----LSEYM-EPGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSF 152 (493)
T ss_pred CCCcHHHHHHHHH----HHhhc-CCCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCH
Confidence 221110 0000 01111 1348999998664 44455566666787 3678872 135688888887
Q ss_pred cccCC
Q 027137 140 NEYKP 144 (227)
Q Consensus 140 ~~~~~ 144 (227)
+.|+.
T Consensus 153 ~a~~~ 157 (493)
T PLN02350 153 EAYKN 157 (493)
T ss_pred HHHHH
Confidence 77653
No 301
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=65.33 E-value=15 Score=26.42 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=19.8
Q ss_pred cEEEEEccChHHHHHHHHHHcC
Q 027137 4 VKIGINGFGRIGRLVARVILQR 25 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~ 25 (227)
.+++|.|+|.+|+.+++.+.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 5899999999999999988766
No 302
>PRK07411 hypothetical protein; Validated
Probab=65.15 E-value=2.5 Score=39.57 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=25.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.-||.|+|.|-+|-.+++.|...+ +.=+.|.|.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G-vg~l~lvD~ 70 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG-IGRIGIVDF 70 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC-CCEEEEECC
Confidence 368999999999999999987664 544445554
No 303
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=65.07 E-value=24 Score=31.07 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.4
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+|-|-| .|.||+.+++.|.+.+ .+++++.+.
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~ 38 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVRD 38 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECC
Confidence 5899999 9999999999998874 788766543
No 304
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.89 E-value=39 Score=31.99 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=24.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.||+|.|+|+.|+.+++.|.+.+ .++ .+.|.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V-~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKV-TAFDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEE-EEECC
Confidence 48999999999999999888775 554 44554
No 305
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=64.57 E-value=8.7 Score=35.66 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=24.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|||.+.|.|.+||.++-.++...+.+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEE
Confidence 3899999999999776666655568888875
No 306
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=64.50 E-value=50 Score=30.29 Aligned_cols=134 Identities=10% Similarity=0.119 Sum_probs=66.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
-+|.|.|.|.+|...++.+...+ .+++++... +.+....+-+ .|- + -.++.+.. +.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~~--~~~~~~~a~~----lGa----~--------~~i~~~~~-----~~ 235 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG-LRVTVISRS--SEKEREAIDR----LGA----D--------SFLVTTDS-----QK 235 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC-CeEEEEeCC--hHHhHHHHHh----CCC----c--------EEEcCcCH-----HH
Confidence 36889999999999888776664 677666432 1111111111 110 0 11221100 00
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCcc-ccCCCCcEEEcCChhhHhHHHH
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPL 162 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~-~~~~~~~IVSnaSCtTn~Lap~ 162 (227)
..+.. .++|+||||+|.-...+.+-..++.|-+-+.+..+..+.+ ++.. .+..+..+...-.++...+..+
T Consensus 236 v~~~~---~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~-----~~~~~~~~~~~~i~g~~~~~~~~~~~~ 307 (375)
T PLN02178 236 MKEAV---GTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLD-----LPIFPLVLGRKMVGGSQIGGMKETQEM 307 (375)
T ss_pred HHHhh---CCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCc-----cCHHHHHhCCeEEEEeCccCHHHHHHH
Confidence 00111 1689999999976455555666666653333433322111 1211 1112334554444455566777
Q ss_pred HHHHhhh
Q 027137 163 AKVIHDK 169 (227)
Q Consensus 163 lk~L~~~ 169 (227)
++.+.+.
T Consensus 308 ~~l~~~g 314 (375)
T PLN02178 308 LEFCAKH 314 (375)
T ss_pred HHHHHhC
Confidence 7777643
No 307
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=64.32 E-value=12 Score=33.78 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=27.5
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+.||-|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 46999999 8999999999999874 78888854
No 308
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=64.12 E-value=18 Score=33.25 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=27.7
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPF 37 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~ 37 (227)
++|-|-| .|.||....+.|.+. +.++|.+.+.+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~-G~~vvV~DNL~ 34 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLS 34 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHC-CCeEEEEecCC
Confidence 3788888 999999999999986 58888887764
No 309
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.82 E-value=11 Score=35.06 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=23.3
Q ss_pred CccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 93 ~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
..|++|||||...+.+.+-..++.|=. +++
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gGt-~vl 271 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGGT-VVL 271 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCCE-EEE
Confidence 489999999999999888777775532 444
No 310
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=63.58 E-value=11 Score=36.23 Aligned_cols=31 Identities=39% Similarity=0.488 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCC-CceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~-~~~ivaIn 34 (227)
|||+|+|.|.+|-.++-.+.+.+ +++++++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 58999999999998877777653 58888874
No 311
>PRK10083 putative oxidoreductase; Provisional
Probab=63.29 E-value=33 Score=30.23 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=49.0
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~p 84 (227)
+|.|+|.|.+|...++.+...-+.+.+.+.+. +.+....+.++ |. . ..++-+.-.+ . +..
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~----Ga-~-----------~~i~~~~~~~-~-~~~ 222 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKES----GA-D-----------WVINNAQEPL-G-EAL 222 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHh----CC-c-----------EEecCccccH-H-HHH
Confidence 78999999999988877654324654444443 33443332222 11 0 1111110000 0 001
Q ss_pred CCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 85 ~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
.... .++|+||||+|.-.+...+..+++.|-+-+.+
T Consensus 223 ~~~g---~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 223 EEKG---IKPTLIIDAACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred hcCC---CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 1111 24689999999644455566777776543333
No 312
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=63.21 E-value=9.9 Score=36.04 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=25.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+||||+|+|.+|..++..+.+ . +++++++
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~-~~V~g~D 35 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-S-RQVVGFD 35 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-C-CEEEEEe
Confidence 4799999999999999888655 3 8888775
No 313
>PTZ00325 malate dehydrogenase; Provisional
Probab=63.19 E-value=13 Score=33.92 Aligned_cols=141 Identities=20% Similarity=0.252 Sum_probs=71.4
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee
Q 027137 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (227)
Q Consensus 3 ~~kVgI~G~-GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~ 81 (227)
+.||+|+|. |+||..++..+...+...-+.+-|.. .++-. . -|-.| ... ...+...
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~-~~~g~--a--~Dl~~------------~~~------~~~v~~~ 64 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV-GAPGV--A--ADLSH------------IDT------PAKVTGY 64 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC-CCccc--c--cchhh------------cCc------CceEEEe
Confidence 469999997 99999998888755433222233321 00000 0 01111 000 1112122
Q ss_pred cCC----CCCCCccCCccEEEeecCcccCH----------------HhHHHHHhCCCCEEEE--eCCCCCCCeEEeccCc
Q 027137 82 RNP----EEIPWAETGAEYVVESTGVFTDK----------------DKAAAHLKGGAKKVII--SAPSKDAPMFVVGVNE 139 (227)
Q Consensus 82 ~~p----~~i~W~~~~vDiVve~tG~f~~~----------------~~a~~hl~~GakkVIi--saps~d~p~~V~gVN~ 139 (227)
.++ +.+ .|.|+||-+.|.-... +-.+.-.+.|.+++|+ |+|- |.-+.+..-..
T Consensus 65 td~~~~~~~l----~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv-dv~~~~~~~~~ 139 (321)
T PTZ00325 65 ADGELWEKAL----RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV-NSTVPIAAETL 139 (321)
T ss_pred cCCCchHHHh----CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH-HHHHHHHHhhh
Confidence 232 233 3899999999874431 1112223467777665 4442 21111110000
Q ss_pred cccC--CCCcEEEcCChhhHhHHHHHHHHhhhcCeeE
Q 027137 140 NEYK--PELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (227)
Q Consensus 140 ~~~~--~~~~IVSnaSCtTn~Lap~lk~L~~~fgI~~ 174 (227)
.++. +..+++..+ +-=-+++-..|-+.+++.-
T Consensus 140 ~~~sg~p~~~viG~g---~LDs~R~r~~la~~l~v~~ 173 (321)
T PTZ00325 140 KKAGVYDPRKLFGVT---TLDVVRARKFVAEALGMNP 173 (321)
T ss_pred hhccCCChhheeech---hHHHHHHHHHHHHHhCcCh
Confidence 1111 246788662 3566899999999999874
No 314
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=63.18 E-value=14 Score=33.51 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=28.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.++||+|+|..|+.+++++.....++-+.|.|.
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r 161 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR 161 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC
Confidence 579999999999999998876656777888876
No 315
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=63.16 E-value=9.2 Score=35.93 Aligned_cols=24 Identities=29% Similarity=0.689 Sum_probs=21.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
+.+|||+|||-.|+.+++-+.+.+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcC
Confidence 579999999999999999887765
No 316
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=63.09 E-value=12 Score=32.91 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=23.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|||+|+|.|.+|..+...|.+.+ .++..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEEe
Confidence 38999999999999998887663 5555443
No 317
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=62.73 E-value=8.7 Score=36.97 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=25.0
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+|||+|+|.+|..+++++.+.+ ++++..|.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG-FTVSVYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC-CeEEEEeC
Confidence 4899999999999999998874 77666553
No 318
>PLN02240 UDP-glucose 4-epimerase
Probab=62.67 E-value=13 Score=32.99 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=27.0
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
..||-|.| +|.+|+.+++.|.+.+ .+|+++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 46899999 8999999999998774 78888753
No 319
>PRK08655 prephenate dehydrogenase; Provisional
Probab=62.65 E-value=12 Score=35.52 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=23.9
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+||+|+| +|.+|+.+++.+.+.+ .++..++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 3899998 9999999999988764 5665553
No 320
>PLN02740 Alcohol dehydrogenase-like
Probab=62.64 E-value=20 Score=32.68 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=23.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~-~ivaIn 34 (227)
-+|.|+|.|.+|...++.+...+ . +++++.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~ 230 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG-ASKIIGVD 230 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCcEEEEc
Confidence 36899999999999888777664 5 466663
No 321
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=62.46 E-value=12 Score=35.24 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+|+|+|+|.+|+.+++.+...+-.+++.++-
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 58999999999999999998764245555543
No 322
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=62.16 E-value=45 Score=31.51 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=24.3
Q ss_pred cEEEEEccChHHHH-HHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRL-VARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~-~~r~l~~~~~~~ivaInd~ 36 (227)
.||.|+|.|..|.. +++.|.+.+ .++. +.|.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G-~~V~-~~D~ 39 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG-YKVS-GSDL 39 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC-CeEE-EECC
Confidence 57999999999999 688887774 6654 4554
No 323
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=62.12 E-value=7.2 Score=32.91 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=24.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.-||.|+|.|-+|..++++|...+ +.-+.+-|
T Consensus 19 ~s~VlviG~gglGsevak~L~~~G-Vg~i~lvD 50 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAG-IDSITIVD 50 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEE
Confidence 368999999999999999998664 54344444
No 324
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=61.70 E-value=15 Score=33.56 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=24.6
Q ss_pred ccEEEEEcc-ChHHHHHHHHHHcCCC------ceEEEE
Q 027137 3 KVKIGINGF-GRIGRLVARVILQRDD------VELVAV 33 (227)
Q Consensus 3 ~~kVgI~G~-GrIGr~~~r~l~~~~~------~~ivaI 33 (227)
++||+|.|. |.+|..++..|...+- .+++.+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~ 39 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL 39 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE
Confidence 579999996 9999999998876542 366665
No 325
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=61.62 E-value=13 Score=36.11 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=25.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
-++-|.|+|++|+.+++.+.+++ .+++.|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~ 448 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIET 448 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC-CCEEEEEC
Confidence 46789999999999999998774 78887853
No 326
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.16 E-value=58 Score=30.57 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=49.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCC-ceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee-
Q 027137 4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV- 81 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~-~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~- 81 (227)
.||.|+|.|..|+..++.+....+ .++. +.|....+..... |. .| +.++..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~-----------------------l~-~g--~~~~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQ-----------------------LP-ED--VELHSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHH-----------------------hh-cC--CEEEeCC
Confidence 479999999999999998887654 6654 5664211110000 10 01 122112
Q ss_pred cCCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 82 ~~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
.++++++ +.|+||-+.|.-.+.+......+.|.+
T Consensus 61 ~~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi~ 94 (438)
T PRK04663 61 WNLEWLL----EADLVVTNPGIALATPEIQQVLAAGIP 94 (438)
T ss_pred CChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 3455553 578999999887665555555556653
No 327
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=61.07 E-value=73 Score=28.61 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=22.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~-ivaIn 34 (227)
-+|.|.|.|.+|...++.+... +.+ ++++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA-GASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEc
Confidence 3789999999999988877665 464 66663
No 328
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=61.06 E-value=13 Score=35.48 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=23.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
.+|+|+|+|.||+.+++.+...+ .+++.+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV~ 241 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIVT 241 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 47999999999999999887664 675544
No 329
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.76 E-value=16 Score=33.43 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=24.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.||||+|.|.+|+.++..+... +++++. .|+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G~~V~l-~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-GLDVVA-WDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEEE-EeC
Confidence 4799999999999999888766 577654 454
No 330
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.57 E-value=51 Score=30.93 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=23.7
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
-|.|+|.|.+|+.+++.|.+.+ .++ .+.|.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~v-~~~D~ 37 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IPF-AVMDS 37 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-CeE-EEEeC
Confidence 4899999999999989888774 664 45564
No 331
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=59.92 E-value=18 Score=31.59 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.1
Q ss_pred EEEEcc-ChHHHHHHHHHHcCC
Q 027137 6 IGINGF-GRIGRLVARVILQRD 26 (227)
Q Consensus 6 VgI~G~-GrIGr~~~r~l~~~~ 26 (227)
|+|+|. |.+|..++..+...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689998 999999999887665
No 332
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=59.85 E-value=37 Score=33.22 Aligned_cols=31 Identities=19% Similarity=0.084 Sum_probs=23.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
-|+.|+|+|++|...++.+...+ ..+++ .|.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG-A~V~v-~d~ 195 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG-AIVRA-FDT 195 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EeC
Confidence 58999999999999888887664 45444 344
No 333
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=59.72 E-value=15 Score=32.99 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.6
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+||+|+|.|.||..+.-.|.+.+ .+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~ 32 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-LPVRLIL 32 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-CCeEEEE
Confidence 479999999999998877776553 5555554
No 334
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=59.49 E-value=15 Score=32.39 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=26.3
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
|||-|.| .|.+|+.+.+.+.++ +.++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCc
Confidence 5999999 899999999888775 588888853
No 335
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=59.31 E-value=82 Score=27.84 Aligned_cols=87 Identities=17% Similarity=0.298 Sum_probs=47.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
-+|.|.|.|.+|+..++.+... +.+++.+... .+...++.++ | . + ..++.+....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~---~~~~~~~~~~----g--~--~--------~vi~~~~~~~----- 225 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRS---PSKKEDALKL----G--A--D--------EFIATKDPEA----- 225 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCC---HHHHHHHHHc----C--C--c--------EEecCcchhh-----
Confidence 3688889999999887776655 4676666432 2222222111 1 0 0 1111110000
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Ga 118 (227)
...+ ..++|+||+|+|.-...+.+..+++.+.
T Consensus 226 ~~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 226 MKKA---AGSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred hhhc---cCCceEEEECCCCcchHHHHHHHhcCCC
Confidence 0111 2379999999997654566677776655
No 336
>PRK08223 hypothetical protein; Validated
Probab=59.23 E-value=7.6 Score=35.11 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=49.4
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC-CcChhhhhhhhccc-ccccCCCCcceEEeCCCeEEECC-EEEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP-FITTDYMTYMFKYD-SVHGQWKHHELKVKDDKTLLFGE-KPVTVF 79 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~-~~~~~~~ayllkyD-S~~Gkf~~~~v~~~~~~~l~i~g-k~I~v~ 79 (227)
.-||.|+|.|-+|-.++..|...+ +.-+.|.|. ..+...+...+-|+ +.-|+.+ .++-. ..-..+|- -.|..+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG-VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~K-ve~a~--~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG-IGKFTIADFDVFELRNFNRQAGAMMSTLGRPK-AEVLA--EMVRDINPELEIRAF 102 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC-CCeEEEEeCCCcchhccccccCcChhHCCCcH-HHHHH--HHHHHHCCCCEEEEE
Confidence 358999999999999999887664 433334443 23444443222222 2245433 22111 00012221 123332
Q ss_pred eec-CCCCCCCccCCccEEEeecCcc
Q 027137 80 GVR-NPEEIPWAETGAEYVVESTGVF 104 (227)
Q Consensus 80 ~~~-~p~~i~W~~~~vDiVve~tG~f 104 (227)
.++ ++++.+.--.+.|+|+||+..|
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCC
Confidence 221 2333221123789999999875
No 337
>PRK07236 hypothetical protein; Provisional
Probab=59.04 E-value=16 Score=33.38 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=25.0
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
|++.+|.|+|-|..|-..+..|.+. +++++-+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~ 35 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVF 35 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence 5678999999999999888888765 3555444
No 338
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=58.24 E-value=18 Score=32.99 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.9
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCC
Q 027137 4 VKIGINGF-GRIGRLVARVILQRD 26 (227)
Q Consensus 4 ~kVgI~G~-GrIGr~~~r~l~~~~ 26 (227)
+||+|+|. |.+|..++..+...+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 49999997 999999988887665
No 339
>PRK14852 hypothetical protein; Provisional
Probab=58.02 E-value=11 Score=39.63 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=23.8
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.-||+|+|.|=+|-.++..|...+ +.-+.|.|
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraG-VG~I~L~D 363 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTG-IGNFNLAD 363 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcC-CCeEEEEc
Confidence 368999999999999999887654 43333444
No 340
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=57.72 E-value=15 Score=35.21 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.3
Q ss_pred EEEEEccChHHHHHHHHHHcCC
Q 027137 5 KIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
||.|+|.|-+|-.+++.|...+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~G 22 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMG 22 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999987653
No 341
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=57.18 E-value=15 Score=33.49 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=26.3
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|+..||||+|.|.+|+-++..+.. .+++++. .|+
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l-~D~ 34 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFAL-AGYDVVL-KDI 34 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhh-cCCceEE-EeC
Confidence 455799999999999999888776 5577544 454
No 342
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=57.16 E-value=82 Score=26.70 Aligned_cols=86 Identities=19% Similarity=0.309 Sum_probs=48.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~-ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
-+|.|.|.|.+|...++.+...+ .+ ++++.. +.+....+-++ |... . + ++..
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~---~~~~~~~~~~~----g~~~---------~-~-~~~~-------- 151 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDP---DAARRELAEAL----GPAD---------P-V-AADT-------- 151 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCcEEEECC---CHHHHHHHHHc----CCCc---------c-c-cccc--------
Confidence 36889999999998888776553 66 766643 22333222111 2101 0 0 1100
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
... +...++|++|+|+|.....+.+..+++.+..
T Consensus 152 -~~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~ 185 (277)
T cd08255 152 -ADE--IGGRGADVVIEASGSPSALETALRLLRDRGR 185 (277)
T ss_pred -hhh--hcCCCCCEEEEccCChHHHHHHHHHhcCCcE
Confidence 000 1123799999998865455566677766653
No 343
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=57.10 E-value=53 Score=29.02 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=51.7
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~p 84 (227)
+|-|.|.|.+|....+.+... +.+++++... .+.+..+-++.. + -.++.+.-... +..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~---~~~~~~~~~~g~---------------~-~~i~~~~~~~~--~~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKM-GFRTVAISRG---SDKADLARKLGA---------------H-HYIDTSKEDVA--EAL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCC---hHHHHHHHHcCC---------------c-EEecCCCccHH--HHH
Confidence 688999999999988877765 4677776543 233333321210 0 11221110000 001
Q ss_pred CCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEe
Q 027137 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (227)
Q Consensus 85 ~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIis 124 (227)
. .| .++|++++++|.-...+.+..+++.+..-+.+.
T Consensus 224 ~--~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 224 Q--EL--GGAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred H--hc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 1 12 268999999875556666777777665433343
No 344
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=56.75 E-value=29 Score=31.33 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=23.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~-~ivaIn 34 (227)
-+|.|.|.|.+|...++.+...+ . +++++.
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~ 219 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG-ASRIIGVD 219 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 36899999999999888776654 6 566664
No 345
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=56.61 E-value=42 Score=30.28 Aligned_cols=138 Identities=12% Similarity=0.170 Sum_probs=68.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
-+|.|+|.|.+|...++.+... +.+++++.+. .+....+++ .+|- + -.++... +..
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~---~~~~~~~~~---~~Ga----~--------~~i~~~~-----~~~ 237 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM-GHHVTVISSS---DKKREEALE---HLGA----D--------DYLVSSD-----AAE 237 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCC---HHHHHHHHH---hcCC----c--------EEecCCC-----hHH
Confidence 3688999999999988877655 4677666542 222212211 1121 0 0111000 000
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCCCCCCeEEeccCcc-ccCCCCcEEEcCChhhHhHHHH
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASCTTNCLAPL 162 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps~d~p~~V~gVN~~-~~~~~~~IVSnaSCtTn~Lap~ 162 (227)
..+.. .++|+||||+|...+.+.+-..++.|.+-+.+..++... .++.. .+.....+.....++..-+.-+
T Consensus 238 ~~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 309 (357)
T PLN02514 238 MQEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPL-----QFVTPMLMLGRKVITGSFIGSMKETEEM 309 (357)
T ss_pred HHHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCC-----cccHHHHhhCCcEEEEEecCCHHHHHHH
Confidence 01111 168999999996555566667777776433333332111 12221 1112344555544444456666
Q ss_pred HHHHhhhcCeeE
Q 027137 163 AKVIHDKFGIVE 174 (227)
Q Consensus 163 lk~L~~~fgI~~ 174 (227)
++.+.+. .++.
T Consensus 310 ~~~~~~g-~l~~ 320 (357)
T PLN02514 310 LEFCKEK-GLTS 320 (357)
T ss_pred HHHHHhC-CCcC
Confidence 6666554 4543
No 346
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=56.58 E-value=19 Score=32.32 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=22.4
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 6 VgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|+|+|.|.+|..++-.+...+-..-+.+.|.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~ 31 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5899999999999888877653333344454
No 347
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=56.39 E-value=23 Score=29.23 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=25.9
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
..+|-|.| .|.+|+.+++.+.+++ .+++.+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r 37 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG-AKVVIYDS 37 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 36899999 8999999999998774 66666653
No 348
>PLN00198 anthocyanidin reductase; Provisional
Probab=56.13 E-value=20 Score=31.87 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=26.3
Q ss_pred CccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 2 ~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
++.+|-|-| .|.||+.+++.|.+.+ .+++++.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 357899999 9999999999998874 6776554
No 349
>PRK15076 alpha-galactosidase; Provisional
Probab=56.05 E-value=14 Score=35.16 Aligned_cols=13 Identities=31% Similarity=0.158 Sum_probs=11.7
Q ss_pred cEEEEEccChHHH
Q 027137 4 VKIGINGFGRIGR 16 (227)
Q Consensus 4 ~kVgI~G~GrIGr 16 (227)
+||+|+|.|.+|-
T Consensus 2 ~KIaIIGaGsvg~ 14 (431)
T PRK15076 2 PKITFIGAGSTVF 14 (431)
T ss_pred cEEEEECCCHHHh
Confidence 5999999999984
No 350
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=55.57 E-value=74 Score=28.69 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=22.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~-~ivaIn 34 (227)
-+|.|.|.|.+|...++.+...+ . .++++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG-ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 37899999999998888776654 6 566654
No 351
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=55.48 E-value=27 Score=27.31 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=25.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~-ivaInd 35 (227)
.|+.|+|.|-+||.++..+.+.+ ++ |.-+|-
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR 44 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR 44 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES
T ss_pred CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC
Confidence 58999999999999999998874 54 555664
No 352
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=55.45 E-value=43 Score=29.82 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=21.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~-ivaI 33 (227)
-+|.|.|.|.+|...++.+... +.+ ++++
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~ 191 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL-GAKSVTAI 191 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEE
Confidence 3789999999999988877655 466 4444
No 353
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=55.13 E-value=22 Score=32.58 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.8
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+||-|.| .|.||+.+++.|.+.+ .+++++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC-CEEEEEE
Confidence 47999999 8999999999998774 7888775
No 354
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.64 E-value=14 Score=35.39 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred CccEEEEEccChHHHHHHHHHHcC
Q 027137 2 GKVKIGINGFGRIGRLVARVILQR 25 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~ 25 (227)
|..+|+|+|.|..|-..++.+.+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC
Confidence 467999999999999999988755
No 355
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=54.43 E-value=20 Score=30.27 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=26.6
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
++|-|.| +|.+|+.+++.|.++ +.+++++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEe
Confidence 3789999 999999999999988 578877764
No 356
>PRK07326 short chain dehydrogenase; Provisional
Probab=53.87 E-value=25 Score=29.12 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=25.4
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.++-|.| .|.+|+.+++.+.+. +.+++++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEee
Confidence 5799999 899999999999876 57877775
No 357
>PRK07340 ornithine cyclodeaminase; Validated
Probab=53.86 E-value=25 Score=31.60 Aligned_cols=33 Identities=18% Similarity=0.025 Sum_probs=26.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+++|+|+|..|+.+++++.....++-+.|.+.
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r 158 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR 158 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 589999999999999999875334566667666
No 358
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=53.76 E-value=14 Score=33.74 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=24.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
||.|+|.|-+|-.+++.|...+ +.-+.|-|.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~G-vg~ItIvD~ 31 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTG-FGEIHIIDL 31 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhc-CCeEEEEcC
Confidence 6899999999999999997654 555555554
No 359
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=53.57 E-value=24 Score=29.99 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=25.9
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+||-|.| .|.||+.+++.|.+. +.+++++..
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~R 49 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAK-GFAVKAGVR 49 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhC-CCEEEEEec
Confidence 5899999 899999999999876 477777653
No 360
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=53.06 E-value=29 Score=28.11 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=25.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+.||.|.|.|++|+..++.+...+ .+++.+.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC-CEEEeccC
Confidence 479999999999999998888774 78777654
No 361
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=53.02 E-value=25 Score=27.35 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=24.0
Q ss_pred EEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 6 VgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|+|+|.|.||..++..|.+ .+.++..+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEcc
Confidence 7899999999999888877 45776666654
No 362
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=52.69 E-value=24 Score=33.46 Aligned_cols=32 Identities=19% Similarity=0.514 Sum_probs=27.6
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+||-|-| .|.||+.+++.|.++ +.+|+++..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGR-GDEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeC
Confidence 37999999 999999999999887 478888754
No 363
>PLN02778 3,5-epimerase/4-reductase
Probab=52.67 E-value=33 Score=30.40 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=24.3
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEE
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVA 32 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~iva 32 (227)
++||-|.| .|.||+.+++.|.+++ .+++.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~ 38 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFHY 38 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEEE
Confidence 57999999 8999999999998774 56653
No 364
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=52.60 E-value=21 Score=34.61 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=24.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.||||+|.|.+|+.++..+... +++++..+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a-G~~V~l~d 35 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA-GHQVLLYD 35 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC-CCeEEEEe
Confidence 4799999999999999988876 47766553
No 365
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=52.39 E-value=23 Score=32.88 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
-||.|+|+|++|+..++.+...+ .+++.++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d 197 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTILD 197 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 47999999999999999988664 6755554
No 366
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=52.39 E-value=23 Score=32.97 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.++-|.|+|++|+.+++.|.+. +.+++.|.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~-~~~v~vid 261 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE-GYSVKLIE 261 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEE
Confidence 5799999999999999988775 47777774
No 367
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=51.77 E-value=17 Score=34.67 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=23.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
..+|||+|+|.||-.++-+...+ +++++++
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~ 38 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASA-GFKVIGV 38 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHc-CCceEeE
Confidence 37999999999998765544444 5888876
No 368
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=51.66 E-value=39 Score=30.52 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=49.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~-ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
-+|.|+|.|.+|...++.+...+ .+ ++++... .+....+-+ +|. . ..++.+...+. .
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~---~~k~~~~~~----~g~-~-----------~~i~~~~~~~~--~ 245 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIV---DSRLELAKE----LGA-T-----------HVINPKEEDLV--A 245 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCC---HHHHHHHHH----cCC-c-----------EEecCCCcCHH--H
Confidence 36889999999998877776654 64 4454322 222222111 110 0 11111100000 0
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCCEEEE
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~GakkVIi 123 (227)
...+.. ..++|+|+||+|.-...+.+..+++.+.+ ++.
T Consensus 246 ~v~~~~--~~~~d~vld~~g~~~~~~~~~~~l~~~G~-~v~ 283 (365)
T cd08278 246 AIREIT--GGGVDYALDTTGVPAVIEQAVDALAPRGT-LAL 283 (365)
T ss_pred HHHHHh--CCCCcEEEECCCCcHHHHHHHHHhccCCE-EEE
Confidence 011111 24799999999864445666777777664 443
No 369
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=51.40 E-value=63 Score=28.21 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=47.5
Q ss_pred EEEEEccChHHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~-ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+|.|+|.|.+|+.+++.+...+ +. ++++.. +.+....+-++.. + ..++.+.-.. .++
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~---~~~~~~~~~~~g~--------~--------~~~~~~~~~~-~~~- 219 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEP---NEEKLELAKKLGA--------T--------ETVDPSREDP-EAQ- 219 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CcEEEEECC---CHHHHHHHHHhCC--------e--------EEecCCCCCH-HHH-
Confidence 6889999999999888776654 65 444433 2333333321111 0 1111100000 000
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
...+ ..++|++|+|+|.-...+.+..+++.+.+
T Consensus 220 -~~~~--~~~vd~v~~~~~~~~~~~~~~~~l~~~G~ 252 (334)
T cd08234 220 -KEDN--PYGFDVVIEATGVPKTLEQAIEYARRGGT 252 (334)
T ss_pred -HHhc--CCCCcEEEECCCChHHHHHHHHHHhcCCE
Confidence 0011 13799999999854445556677776653
No 370
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=51.37 E-value=27 Score=32.35 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=26.9
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+||.|.| .|.||+.+++.|.+++ .+++++.-
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEe
Confidence 46899999 8999999999998774 78877754
No 371
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=50.99 E-value=23 Score=31.96 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=20.0
Q ss_pred EEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 8 INGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 8 I~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|+|.|.||..++..+...+-+.=+.+-|.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999998876654332333343
No 372
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=50.92 E-value=25 Score=33.16 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=23.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~-~ivaIn 34 (227)
.+|+|+|.|.+|+.+++.+...+ + +++.++
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~ 213 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVAN 213 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEe
Confidence 58999999999999999888664 5 444444
No 373
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.65 E-value=93 Score=28.96 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=24.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.++.|.|.|++|+..++.+.+.+ .+++. .|.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G-~~V~~-~d~ 36 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG-ANVTV-NDG 36 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CEEEE-EcC
Confidence 47999999999999999888774 66544 453
No 374
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=50.47 E-value=25 Score=35.36 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=24.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCC-CceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~-~~~ivaIn 34 (227)
.||+|+|+|.+|..+++.+.+.+ ..++++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d 35 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVD 35 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 58999999999999999988664 23555543
No 375
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=50.31 E-value=24 Score=31.87 Aligned_cols=128 Identities=18% Similarity=0.244 Sum_probs=65.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhh-hhhhhcccccccC-CCCcceEE-eCCCeEEE----CCEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDY-MTYMFKYDSVHGQ-WKHHELKV-KDDKTLLF----GEKPV 76 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~-~ayllkyDS~~Gk-f~~~~v~~-~~~~~l~i----~gk~I 76 (227)
.|||.+|+|.+|..+++.|.+.+ +++..-|- +++. ...+.+ +|- ......+. .+-+ ++| ++..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r---~~~ka~~~~~~----~Ga~~a~s~~eaa~~aD-vVitmv~~~~~V 71 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNR---TPEKAAELLAA----AGATVAASPAEAAAEAD-VVITMLPDDAAV 71 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeC---ChhhhhHHHHH----cCCcccCCHHHHHHhCC-EEEEecCCHHHH
Confidence 38999999999999999999875 77666553 2222 111211 111 00000000 0111 211 22111
Q ss_pred -EEEeecCCCCCCCccCCccEEEeec--CcccCHHhHHHHHhCCCCEEEEeCCC--------CCCCeEEeccCccccCC
Q 027137 77 -TVFGVRNPEEIPWAETGAEYVVEST--GVFTDKDKAAAHLKGGAKKVIISAPS--------KDAPMFVVGVNENEYKP 144 (227)
Q Consensus 77 -~v~~~~~p~~i~W~~~~vDiVve~t--G~f~~~~~a~~hl~~GakkVIisaps--------~d~p~~V~gVN~~~~~~ 144 (227)
.|... +-.-+.+-+ .-.+++||+ ....+++.+....+.|. -.+++|- ....+|+.|=-.+.|+.
T Consensus 72 ~~V~~g-~~g~~~~~~-~G~i~IDmSTisp~~a~~~a~~~~~~G~--~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r 146 (286)
T COG2084 72 RAVLFG-ENGLLEGLK-PGAIVIDMSTISPETARELAAALAAKGL--EFLDAPVSGGVPGAAAGTLTIMVGGDAEAFER 146 (286)
T ss_pred HHHHhC-ccchhhcCC-CCCEEEECCCCCHHHHHHHHHHHHhcCC--cEEecCccCCchhhhhCceEEEeCCCHHHHHH
Confidence 11100 001111211 236888887 34445566667777787 4688882 13567777776666653
No 376
>PLN02827 Alcohol dehydrogenase-like
Probab=50.26 E-value=48 Score=30.32 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=21.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~-ivaI 33 (227)
-+|.|.|.|.+|...++.+...+ +. ++++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~ 224 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRG-ASQIIGV 224 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 36889999999999888776654 64 5554
No 377
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=50.21 E-value=51 Score=28.70 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=49.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~p 84 (227)
+|-|+|.|.+|+..++.+... +..++++.. +.+...++-++.. . -.++.+... ..+. .
T Consensus 168 ~vli~g~g~vG~~~~~la~~~-G~~V~~~~~---s~~~~~~~~~~g~-----~-----------~~~~~~~~~-~~~~-~ 225 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAM-GAAVIAVDI---KEEKLELAKELGA-----D-----------EVLNSLDDS-PKDK-K 225 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCEEEEEcC---CHHHHHHHHHhCC-----C-----------EEEcCCCcC-HHHH-H
Confidence 678889999999988877665 477776643 2333333321111 0 001100000 0000 0
Q ss_pred CCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 85 ~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
...+ ..++|+|++|.|.....+.+..+++.|.+
T Consensus 226 ~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~ 258 (338)
T cd08254 226 AAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGR 258 (338)
T ss_pred HHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCE
Confidence 0111 23799999999865455667788887764
No 378
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=50.07 E-value=27 Score=30.76 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=25.8
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
|||-|.| .|.||+.+++.|.+. +.+++++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-CCeEEEEec
Confidence 3899999 899999999999876 478877753
No 379
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=50.04 E-value=47 Score=30.14 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=23.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~-~ivaIn 34 (227)
-+|.|.|.|.+|...++.+...+ . +++++.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~ 217 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK-ASRIIAID 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 36899999999999888776654 5 566663
No 380
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=49.83 E-value=29 Score=31.91 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=25.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+|||+|-|..|+.+++++.+. +++++.+.
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l-G~~v~~~d 32 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL-GYKVIVLD 32 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEe
Confidence 4899999999999999888776 48877664
No 381
>PRK09126 hypothetical protein; Provisional
Probab=49.50 E-value=26 Score=31.79 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=26.6
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
||+.+|.|+|-|..|-..+..|... +++++-+.
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E 33 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIE 33 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEEe
Confidence 7889999999999999888887665 46665554
No 382
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=49.49 E-value=1.3e+02 Score=27.79 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=23.1
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
+|.|.|.|.||...++.+... +.+++.+.|.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~ 218 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLL-GAAVVIVGDL 218 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCceEEEeCC
Confidence 678889999999988877655 4665555554
No 383
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=49.16 E-value=74 Score=26.33 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=23.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
-+|.|+|.|.+|+..++.+...+ .+++++..
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~ 166 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDR 166 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEcC
Confidence 37899997779999888776654 77776643
No 384
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=49.09 E-value=55 Score=28.77 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=48.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~-ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
-+|.|+|.|.+|..+++.+... +.+ ++++.. +.+...++.+|.. . ..++.+.-.. .+.
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~-g~~~v~~~~~---s~~~~~~~~~~g~-----~-----------~~~~~~~~~~-~~~ 225 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKAS-GARKVIVSDL---NEFRLEFAKKLGA-----D-----------YTIDAAEEDL-VEK 225 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEECC---CHHHHHHHHHhCC-----c-----------EEecCCccCH-HHH
Confidence 3688999999999988866554 467 655533 3344433332221 0 1111110000 000
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
--...+. .++|+||+|+|.......+..+++.+.+
T Consensus 226 i~~~~~~--~~vd~vld~~~~~~~~~~~~~~l~~~g~ 260 (343)
T cd08235 226 VRELTDG--RGADVVIVATGSPEAQAQALELVRKGGR 260 (343)
T ss_pred HHHHhCC--cCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 0000111 2689999999854344555677777654
No 385
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=48.55 E-value=7.7 Score=29.31 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCccEEEeecCcccCHHhHHHHHhCCCCEEEEeCCC
Q 027137 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127 (227)
Q Consensus 92 ~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisaps 127 (227)
.++|+||||+|.....+.+-..++.|.+-+++..++
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 479999999996666677777777776545554443
No 386
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=48.40 E-value=30 Score=36.64 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.1
Q ss_pred ccEEEEEccChHHHHHHHHHHcC
Q 027137 3 KVKIGINGFGRIGRLVARVILQR 25 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~ 25 (227)
..||.|+|.|-+|-.+++.|...
T Consensus 419 ~~kVlvvGaGGlG~e~lknLal~ 441 (1008)
T TIGR01408 419 NLNIFLVGCGAIGCEMLKNFALM 441 (1008)
T ss_pred hCcEEEECCChHHHHHHHHHHHh
Confidence 36899999999999999998754
No 387
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=48.40 E-value=50 Score=29.36 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 027137 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~-~ivaIn 34 (227)
+|.|+|.|.+|...++.+... +. .++++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~ 204 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAA-GASKIIVSE 204 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEEC
Confidence 689999999999988877766 46 565553
No 388
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=48.31 E-value=59 Score=27.88 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=23.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~-ivaInd 35 (227)
-+|.|.|.|.+|...++.+... +++ ++++..
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~-g~~~v~~~~~ 162 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAA-GARRVIAIDR 162 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEECC
Confidence 3688999999999988877665 477 666654
No 389
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=48.28 E-value=93 Score=27.14 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=23.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
-+|.|.|.|-+|+.+++.+... +++++++..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~ 194 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAM-GFETVAITR 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 3688999988999887777665 477776654
No 390
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=48.26 E-value=97 Score=27.06 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=24.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.++.|.|.|-+|+.+++.+.+.+ .++...+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 47999999999999999998765 56665543
No 391
>PLN02206 UDP-glucuronate decarboxylase
Probab=47.53 E-value=28 Score=33.05 Aligned_cols=31 Identities=16% Similarity=0.464 Sum_probs=27.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+||-|.| .|.||+.+++.|.+.+ .+|+++..
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~ 151 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDN 151 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCc-CEEEEEeC
Confidence 7899999 8999999999998874 78888754
No 392
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.51 E-value=39 Score=27.75 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=24.4
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+.+|-|.| .|-||+.+++.+.+++ .+++.+.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~ 37 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAG-ADVVVHY 37 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEe
Confidence 45899999 8999999999998774 5654443
No 393
>PRK08291 ectoine utilization protein EutC; Validated
Probab=47.24 E-value=40 Score=30.57 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+++|+|.|..|+.+++++....+++-+.|.+.
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R 165 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWAR 165 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 489999999999999998875445776777765
No 394
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=47.06 E-value=23 Score=33.84 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=29.5
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
||+..||++|+|.+|+.++.+..++ ++.|..-|-.
T Consensus 1 ~~~~~iGviGLaVMG~NLaLNi~~~-G~~VavyNRt 35 (473)
T COG0362 1 MMKADIGVIGLAVMGSNLALNIADH-GYTVAVYNRT 35 (473)
T ss_pred CCccceeeEehhhhhHHHHHHHHhc-CceEEEEeCC
Confidence 6678899999999999998888877 4887777764
No 395
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=46.97 E-value=12 Score=36.31 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=19.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~iv 31 (227)
.+|+|+|+|.+|+..+..+..+ +++++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS-GvnVv 63 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS-GLDIS 63 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc-cceeE
Confidence 5899999999999655444444 35543
No 396
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=46.86 E-value=31 Score=34.27 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.8
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+||-|-| .|.||+.+++.|.+..+.+|+++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 6899999 8999999999998765689988864
No 397
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=46.64 E-value=49 Score=23.05 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=22.5
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
||.|+|.|.+|-.++..+.+.. .++.-|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli 28 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLI 28 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEE
Confidence 6899999999999999987764 554444
No 398
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=46.44 E-value=30 Score=31.21 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=26.9
Q ss_pred CCccEEEEEccChHHHHHHHHHHcC--CCceEEEEeC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVAVND 35 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~--~~~~ivaInd 35 (227)
|++.+|.|+|.|..|-..+..|... .+++++-+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 7778999999999999888777654 2577665553
No 399
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.26 E-value=35 Score=30.57 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEE
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELV 31 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~iv 31 (227)
||+|+|.|.+|..+...|.+.+ .++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~ 27 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVN 27 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEE
Confidence 8999999999999988887663 4544
No 400
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=46.02 E-value=33 Score=30.63 Aligned_cols=31 Identities=39% Similarity=0.490 Sum_probs=24.5
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.||-|.| +|.||+.+++.|.+.+ .+++.+.+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEe
Confidence 4899999 8999999999998775 55454444
No 401
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=45.88 E-value=90 Score=28.59 Aligned_cols=61 Identities=20% Similarity=0.162 Sum_probs=36.0
Q ss_pred CccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC-CCCCCeEEeccCccccCCCCcEEEcCChhh
Q 027137 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SKDAPMFVVGVNENEYKPELNIVSNASCTT 156 (227)
Q Consensus 93 ~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap-s~d~p~~V~gVN~~~~~~~~~IVSnaSCtT 156 (227)
+-|++|..+-.-...+-.+.|++-|| +|+++. ++|+.+-|.-+|.=.+- +..+|+.++-.|
T Consensus 230 ~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~~V~Ii-~GGlV~~s~~it 291 (351)
T COG5322 230 QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVGGVRII-PGGLVEHSLDIT 291 (351)
T ss_pred ccceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCCCeEEe-cCccccCccccc
Confidence 44566655555555566789999999 899886 45655555555522211 234555554433
No 402
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=45.63 E-value=82 Score=27.62 Aligned_cols=31 Identities=16% Similarity=0.433 Sum_probs=23.9
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+|.|.|.|.+|..+++.+...+..+++++..
T Consensus 170 ~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~ 200 (340)
T cd05284 170 TVVVIGVGGLGHIAVQILRALTPATVIAVDR 200 (340)
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCcEEEEeC
Confidence 6899998889999888777664477777654
No 403
>PLN00203 glutamyl-tRNA reductase
Probab=45.42 E-value=28 Score=34.03 Aligned_cols=32 Identities=22% Similarity=0.549 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+|+|+|.|.+|+.+++.+...+--+++.+|-
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999998764224555553
No 404
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=45.39 E-value=39 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.3
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
..+|.|.| .|.+|+.+++.+.+++ .+++.+..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r 38 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG-AEVIVVDI 38 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 35799999 8999999999998774 67777754
No 405
>PRK08163 salicylate hydroxylase; Provisional
Probab=45.32 E-value=35 Score=30.93 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=23.6
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
|+.+|.|+|.|..|-..+..|... ++++.-+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~ 33 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLL 33 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEE
Confidence 467999999999999888877655 3554444
No 406
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=45.16 E-value=44 Score=30.73 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=28.2
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCc-eEEEEeCCCcChhhh
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYM 43 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~-~ivaInd~~~~~~~~ 43 (227)
.-||.|+|.|.+|..+++.|...+ + ++.-|.+-..+...+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL 64 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNL 64 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHc
Confidence 468999999999999999998764 5 554454333344444
No 407
>PLN02858 fructose-bisphosphate aldolase
Probab=44.94 E-value=29 Score=37.93 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=25.3
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.+||++|+|.+|..+++.|...+ +++...|
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G-~~V~v~d 354 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSN-FSVCGYD 354 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCC-CEEEEEe
Confidence 68999999999999999998764 7766554
No 408
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=44.73 E-value=34 Score=29.74 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=25.5
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+|-|.| .|.||+.+++.|.+.+ .+++++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEe
Confidence 789999 8999999999998774 67777764
No 409
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=44.66 E-value=29 Score=28.81 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=21.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.++.|.|||.+|+-+++.+...+ .. |.|.|.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G-a~-V~V~e~ 54 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG-AR-VTVTEI 54 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT--E-EEEE-S
T ss_pred CEEEEeCCCcccHHHHHHHhhCC-CE-EEEEEC
Confidence 47999999999999999998764 33 344443
No 410
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=44.63 E-value=1.7e+02 Score=26.29 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=22.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCc-eEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~-~ivaIn 34 (227)
-+|.|+|.|.+|...++.+...+ . .++++.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~ 218 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAG-ASRIIGID 218 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 36899999999999888776654 5 566654
No 411
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=44.55 E-value=61 Score=29.24 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=21.1
Q ss_pred EEEEEccChHHHHHHHHHHcCCCce-EEEE
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~-ivaI 33 (227)
+|.|+|.|.+|...++.+...+ .. ++++
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~ 214 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAG-ASRIIAV 214 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCeEEEE
Confidence 6889999999999888776654 54 4444
No 412
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=44.40 E-value=44 Score=29.39 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=22.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCc-eEEEE
Q 027137 5 KIGINGFGRIGRLVARVILQRDDV-ELVAV 33 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~-~ivaI 33 (227)
+|.|.|.|.+|..+++.+...+ + .++++
T Consensus 170 ~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~ 198 (344)
T cd08284 170 TVAVIGCGPVGLCAVLSAQVLG-AARVFAV 198 (344)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CceEEEE
Confidence 6889999999999888877664 5 67777
No 413
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=44.32 E-value=45 Score=30.26 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=26.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+++|+|.|..|+.+++++....+++-+.|.+.
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R 162 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWAR 162 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECC
Confidence 479999999999999999975445776767665
No 414
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=43.89 E-value=1.2e+02 Score=26.19 Aligned_cols=90 Identities=18% Similarity=0.339 Sum_probs=49.4
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+|-|+| .|.+|...++.+... +.+++++... .+...++.++ |- . -.++.+.-.+ . +.
T Consensus 146 ~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s---~~~~~~l~~~----Ga-~-----------~vi~~~~~~~-~-~~ 203 (329)
T cd08294 146 TVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGS---DDKVAWLKEL----GF-D-----------AVFNYKTVSL-E-EA 203 (329)
T ss_pred EEEEecCccHHHHHHHHHHHHc-CCEEEEEeCC---HHHHHHHHHc----CC-C-----------EEEeCCCccH-H-HH
Confidence 688999 799999988877665 4787776543 2333333222 21 0 0111100000 0 00
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
... +...++|+|+|++|. ...+.+..+++.+.+
T Consensus 204 v~~--~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~ 236 (329)
T cd08294 204 LKE--AAPDGIDCYFDNVGG-EFSSTVLSHMNDFGR 236 (329)
T ss_pred HHH--HCCCCcEEEEECCCH-HHHHHHHHhhccCCE
Confidence 000 112379999999997 455666677776653
No 415
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=43.71 E-value=29 Score=29.92 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=28.4
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCc-eEEEEeC
Q 027137 1 MGKVKIGING-FGRIGRLVARVILQRDDV-ELVAVND 35 (227)
Q Consensus 1 m~~~kVgI~G-~GrIGr~~~r~l~~~~~~-~ivaInd 35 (227)
|.++..-|.| +|..|+.+++.+.+.+.| ++++|-.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~R 52 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILR 52 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEe
Confidence 4456788999 899999999999999876 6666654
No 416
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=43.45 E-value=1.7e+02 Score=25.69 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=38.6
Q ss_pred CccEEEeecCcccCHHhHHHHHhCCCCEEEE-eCCCCCCCeEEeccCc-cccCCCCcEEEcCChhhHhHHHHHHHHhh
Q 027137 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVII-SAPSKDAPMFVVGVNE-NEYKPELNIVSNASCTTNCLAPLAKVIHD 168 (227)
Q Consensus 93 ~vDiVve~tG~f~~~~~a~~hl~~GakkVIi-saps~d~p~~V~gVN~-~~~~~~~~IVSnaSCtTn~Lap~lk~L~~ 168 (227)
++|++++|+|.-...+.+..+++.+-. +++ +.++... .+|. ..+.....+...+.+.-..+..+++.+.+
T Consensus 237 ~~d~il~~~g~~~~~~~~~~~l~~~g~-~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (345)
T cd08287 237 GADAVLECVGTQESMEQAIAIARPGGR-VGYVGVPHGGV-----ELDVRELFFRNVGLAGGPAPVRRYLPELLDDVLA 308 (345)
T ss_pred CCCEEEECCCCHHHHHHHHHhhccCCE-EEEecccCCCC-----ccCHHHHHhcceEEEEecCCcHHHHHHHHHHHHc
Confidence 689999999865566667778876643 443 3222111 1222 22222344555555555566666665543
No 417
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=43.13 E-value=32 Score=29.58 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.7
Q ss_pred EEEEEc-cChHHHHHHHHHHcCC-CceEEEEe
Q 027137 5 KIGING-FGRIGRLVARVILQRD-DVELVAVN 34 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~-~~~ivaIn 34 (227)
||-|.| +|.||+.+++.+.+.+ ..+++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 578999 8999999999998764 47887775
No 418
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=42.86 E-value=35 Score=29.25 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=24.4
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
||-|.| .|.||+.+++.+.+. +.+++++.-
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCC
Confidence 578999 899999999999876 467776643
No 419
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=42.60 E-value=38 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.1
Q ss_pred EEEEEcc-ChHHHHHHHHHHcCC
Q 027137 5 KIGINGF-GRIGRLVARVILQRD 26 (227)
Q Consensus 5 kVgI~G~-GrIGr~~~r~l~~~~ 26 (227)
||+|+|. |.||..++..+...+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~ 23 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQP 23 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCC
Confidence 7999998 999999988887665
No 420
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=42.57 E-value=44 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=26.5
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+||-|.| .|.||+.+++.+.+.+ .+++++.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r 42 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG-YTVHATLR 42 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 6899999 8999999999998874 78887654
No 421
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=42.08 E-value=94 Score=27.29 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=22.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
-+|.|.|.|.+|...++.+... +.+++.+.+
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~-G~~~v~~~~ 193 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKAR-GVGPIVASD 193 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEEC
Confidence 3688999999999887777655 366444444
No 422
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=42.02 E-value=1e+02 Score=26.75 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=48.9
Q ss_pred EEEEEcc-ChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 5 kVgI~G~-GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+|-|+|. |.+|..+++.+... +++++++... .+...++.++ |- . -.++.+... .+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~-g~~v~~~~~~---~~~~~~~~~~----g~-~-----------~v~~~~~~~---~~~ 205 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKL-GYEVVASTGK---ADAADYLKKL----GA-K-----------EVIPREELQ---EES 205 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHC-CCeEEEEecC---HHHHHHHHHc----CC-C-----------EEEcchhHH---HHH
Confidence 6889995 99999988877766 4777776543 2222222211 10 0 111111100 000
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
... +...++|+|+||+|. ...+.+..+++.+..
T Consensus 206 ~~~--~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~ 238 (326)
T cd08289 206 IKP--LEKQRWAGAVDPVGG-KTLAYLLSTLQYGGS 238 (326)
T ss_pred HHh--hccCCcCEEEECCcH-HHHHHHHHHhhcCCE
Confidence 001 122468999999997 355666777766553
No 423
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=41.96 E-value=1e+02 Score=27.11 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=22.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCce-EEEEeC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~-ivaInd 35 (227)
+|.|+|.|.+|+.+++.+... +.+ ++++..
T Consensus 162 ~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~ 192 (343)
T cd08236 162 TVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDI 192 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 688999999999988877655 465 666654
No 424
>PLN02702 L-idonate 5-dehydrogenase
Probab=41.94 E-value=83 Score=28.21 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=48.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEee-cC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV-RN 83 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~-~~ 83 (227)
+|.|+|.|.+|...++.+... +.+.+.+.+. +.+....+.++ |- +. .+.++.+.-...+. ..
T Consensus 184 ~vlI~g~g~vG~~~~~~a~~~-G~~~v~~~~~--~~~~~~~~~~~----g~----~~------~~~~~~~~~~~~~~~~~ 246 (364)
T PLN02702 184 NVLVMGAGPIGLVTMLAARAF-GAPRIVIVDV--DDERLSVAKQL----GA----DE------IVLVSTNIEDVESEVEE 246 (364)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEECC--CHHHHHHHHHh----CC----CE------EEecCcccccHHHHHHH
Confidence 689999999999888877665 4654444443 23333222111 11 00 01111100000000 00
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
..+. .. .++|+||||+|.....+.+..+++.+.+
T Consensus 247 ~~~~-~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~ 280 (364)
T PLN02702 247 IQKA-MG-GGIDVSFDCVGFNKTMSTALEATRAGGK 280 (364)
T ss_pred Hhhh-cC-CCCCEEEECCCCHHHHHHHHHHHhcCCE
Confidence 0001 11 2689999999854455667788877664
No 425
>PRK12827 short chain dehydrogenase; Provisional
Probab=41.87 E-value=49 Score=27.34 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=25.4
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
..++-|.| .|.||+.+++.+.+++ .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 46899999 8999999999998764 6776654
No 426
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=41.72 E-value=36 Score=32.41 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=26.0
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
...|-|.| +|++||.+.+.|.+++ +.+-+.-
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrg-f~vra~V 110 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRG-FSVRALV 110 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCC-Ceeeeec
Confidence 47899999 9999999999999886 6665543
No 427
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=41.38 E-value=2.3e+02 Score=26.07 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=23.6
Q ss_pred CCccEEEeecCcccCHHhHHHHHhCCCCEEEEeC
Q 027137 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 125 (227)
Q Consensus 92 ~~vDiVve~tG~f~~~~~a~~hl~~GakkVIisa 125 (227)
.++|+|||++|...+.+.+-..++.+-+.+++.+
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 3799999999876566667777775544455544
No 428
>PRK05586 biotin carboxylase; Validated
Probab=41.37 E-value=40 Score=31.80 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=27.1
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.||+|.|-|.+|+.+++++.+. +++++++.+
T Consensus 3 kkvli~g~G~~~~~~~~aa~~l-G~~~v~v~~ 33 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREM-GIETVAVYS 33 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHc-CCcEEEEcC
Confidence 5999999999999999999887 488888844
No 429
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=41.29 E-value=44 Score=33.02 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=26.8
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+..||||+|-|..|+.+++++.+. +++++.+.
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~l-G~~Vi~ld 52 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQM-GIKVKVLD 52 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 356999999999999999988876 48877774
No 430
>PLN02572 UDP-sulfoquinovose synthase
Probab=41.23 E-value=42 Score=31.72 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.9
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+||-|-| .|.||+.+++.|.+.+ .+++++.
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 5899999 8999999999999874 7877764
No 431
>PRK05086 malate dehydrogenase; Provisional
Probab=41.11 E-value=47 Score=30.06 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.8
Q ss_pred cEEEEEcc-ChHHHHHHHHHHc
Q 027137 4 VKIGINGF-GRIGRLVARVILQ 24 (227)
Q Consensus 4 ~kVgI~G~-GrIGr~~~r~l~~ 24 (227)
+||+|+|. |.||+.++..+..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 49999996 9999999887754
No 432
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=40.66 E-value=95 Score=27.39 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=23.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+|.|+|.|.+|+.+++.+... +++++++..
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~ 197 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASAL-GARVIAVDI 197 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEeC
Confidence 689999999999988877665 578777744
No 433
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=40.58 E-value=86 Score=27.95 Aligned_cols=30 Identities=10% Similarity=0.296 Sum_probs=23.3
Q ss_pred EEEEEccChHHHHHHHHHHcCCCc-eEEEEeC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVND 35 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~-~ivaInd 35 (227)
+|-|.|.|-+|...++.+... +. .++++..
T Consensus 180 ~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~ 210 (361)
T cd08231 180 TVVVQGAGPLGLYAVAAAKLA-GARRVIVIDG 210 (361)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 688999999999988877665 46 7766643
No 434
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=40.30 E-value=62 Score=29.15 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=27.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
-+++|+|+|..|+.+++++.....++=+-|.++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r 150 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR 150 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC
Confidence 479999999999999999876555766677776
No 435
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=40.13 E-value=50 Score=29.10 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=24.6
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.++.|.|.|.+||.+++++.+.+-.+|..+|-
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 47999999999999999998765245544543
No 436
>PRK09291 short chain dehydrogenase; Provisional
Probab=40.06 E-value=56 Score=27.31 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=25.6
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.++-|.| .|.||+.+++.+.+.+ .+++++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG-HNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence 4789999 8999999999998774 77777654
No 437
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=40.02 E-value=41 Score=29.57 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=22.8
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
||-|-| .|.||+.+.+.|.+.+ +++++.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~ 30 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALD 30 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEec
Confidence 899999 8999999999988765 455553
No 438
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=39.87 E-value=52 Score=26.46 Aligned_cols=31 Identities=35% Similarity=0.424 Sum_probs=26.1
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
++.|.|.|..|+.+++.+.+. ++++++.-|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEcC
Confidence 478999999999999988754 6899988774
No 439
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=39.85 E-value=45 Score=33.04 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=27.7
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcC-CCceEEEEeC
Q 027137 3 KVKIGING-FGRIGRLVARVILQR-DDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~-~~~~ivaInd 35 (227)
.+||-|-| +|.||+.+++.|.+. ++.+|+++..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 46999999 999999999999876 3688888753
No 440
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=39.83 E-value=76 Score=26.17 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=24.4
Q ss_pred cEEEEEccChH-HHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRI-GRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrI-Gr~~~r~l~~~~~~~ivaInd 35 (227)
.||.|+|.|.+ |+.+++.|.+.. .+++.++.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r 76 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHS 76 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 58999999985 988999888764 56666654
No 441
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=39.72 E-value=40 Score=30.51 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=22.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+||.|+|.|.+|-.+.-.|.+.+ -++.-+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~ 30 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV 30 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence 49999999999999888887765 3433343
No 442
>PRK06141 ornithine cyclodeaminase; Validated
Probab=39.68 E-value=61 Score=29.21 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=23.7
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+|+|+|+|..|+.+++++.....++=+.|.+.
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R 158 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGR 158 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 589999999999999987765323443444444
No 443
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=39.14 E-value=60 Score=28.28 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=23.8
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 6 IGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 6 VgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|-|.| .|.||+.+++.|.+.+ .+++++.|.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecC
Confidence 46788 8999999999998874 666666554
No 444
>PLN02214 cinnamoyl-CoA reductase
Probab=39.13 E-value=51 Score=29.62 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=26.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+|-|-| .|.||+.+++.|.+.+ .+++++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG-YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeC
Confidence 5799999 7999999999998774 77777654
No 445
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=39.12 E-value=2.7e+02 Score=24.88 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=22.8
Q ss_pred EEEEEccChHHHHHHHHHHcCCCce-EEEEeC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVE-LVAVND 35 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~-ivaInd 35 (227)
+|.|+|.|.+|+.+++.+...+ ++ ++++..
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~ 220 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDV 220 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 6889999999999888776654 66 665543
No 446
>PRK07577 short chain dehydrogenase; Provisional
Probab=38.92 E-value=62 Score=26.61 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=26.5
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 1 m~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
|+..++-|.| .|.||+.+++.+.+.+ .+++.+..
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r 35 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLG-HQVIGIAR 35 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 4335789999 8999999999988774 67776643
No 447
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=38.80 E-value=51 Score=32.65 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=24.9
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceE-EEEeC
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVEL-VAVND 35 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~i-vaInd 35 (227)
.+||-|-| .|.||+.+.+.|.+.+ .++ ++..|
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~~~~~ 413 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQG-IAYEYGKGR 413 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhCC-CeEEeeccc
Confidence 47999999 8999999999887663 666 34444
No 448
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=38.78 E-value=92 Score=27.59 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=47.5
Q ss_pred EEEEEccChHHHHHHHHHHcCCCc-eEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeecC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~-~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~~ 83 (227)
+|.|.|.|.+|...++.+... +. .++++.. +.+...++-++.. + ..++.+...... .
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~-G~~~v~~~~~---~~~~~~~~~~~g~--------~--------~~~~~~~~~~~~-~- 235 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKAL-GPANIIVVDI---DEAKLEAAKAAGA--------D--------VVVNGSDPDAAK-R- 235 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCCeEEEEeC---CHHHHHHHHHhCC--------c--------EEecCCCccHHH-H-
Confidence 688999999999888777655 46 4444432 2233333322211 0 112211111000 0
Q ss_pred CCCCCCccCCccEEEeecCcccCHHhHHHHHhCCC
Q 027137 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (227)
Q Consensus 84 p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Ga 118 (227)
.... +.. ++|+++|++|.....+.+..+++.+.
T Consensus 236 ~~~~-~~~-~~d~vid~~g~~~~~~~~~~~l~~~g 268 (350)
T cd08240 236 IIKA-AGG-GVDAVIDFVNNSATASLAFDILAKGG 268 (350)
T ss_pred HHHH-hCC-CCcEEEECCCCHHHHHHHHHHhhcCC
Confidence 0000 122 68999999986555666777777665
No 449
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.77 E-value=44 Score=32.46 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=26.2
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceE-EEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVEL-VAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~i-vaInd~ 36 (227)
++|+|+|-|.-|-.++..|.+++..+- ++|-++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~ 35 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEP 35 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecc
Confidence 699999999999999999987764433 666554
No 450
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=38.69 E-value=48 Score=34.35 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=28.6
Q ss_pred CCccEEEEEccChHHHHHHHHHHcC---CCceEEEEeC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQR---DDVELVAVND 35 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~---~~~~ivaInd 35 (227)
||+.||.|+|-|..|-..++.+.+. ++++|+-|..
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~ 38 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCE 38 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEEC
Confidence 7677999999999999888888643 3588888865
No 451
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.49 E-value=61 Score=26.76 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=24.8
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
+.++-|.| .|.||+.+++.+.+. +.+++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE-GAKVVIA 35 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE
Confidence 45799999 899999999998876 4777766
No 452
>PRK08017 oxidoreductase; Provisional
Probab=38.41 E-value=63 Score=27.01 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=25.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.++-|.| .|.||+.+++.+.+.+ .+++++..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 4799999 6999999999998764 67776643
No 453
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=38.36 E-value=51 Score=28.31 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=25.9
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+|-|-| .|.||+.+++.|.+. +.+++++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence 488999 899999999999987 588888875
No 454
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=38.27 E-value=82 Score=27.73 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=23.5
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCc-eEEEEeC
Q 027137 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~-GrIGr~~~r~l~~~~~~-~ivaInd 35 (227)
-+|-|+|. |.+|...++.+... +. +++++..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~ 188 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICG 188 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 37899994 99999988877655 46 6777754
No 455
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=38.15 E-value=96 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=24.8
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
-+|.|+| .|.+|...++.+... +.+++++.+.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~-G~~v~~~~~~ 173 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAAR-GINVINLVRR 173 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHC-CCeEEEEecC
Confidence 3688988 699999988877666 4788777664
No 456
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=37.80 E-value=49 Score=29.41 Aligned_cols=29 Identities=38% Similarity=0.504 Sum_probs=23.0
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEE
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
||-|-| .|.||+.+++.|.+.+.-.++.+
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~ 31 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNV 31 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEe
Confidence 899999 89999999999988753334444
No 457
>PRK12829 short chain dehydrogenase; Provisional
Probab=37.79 E-value=61 Score=27.16 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=25.5
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
..++-|.| .|.||+.+++.+.+.+ .+++.+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~ 42 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCD 42 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEe
Confidence 46899999 8999999999998774 6766665
No 458
>PRK06182 short chain dehydrogenase; Validated
Probab=37.61 E-value=66 Score=27.46 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.3
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|+..++-|.| .|.||+.+++.+.+. +.+++++.
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~-G~~V~~~~ 34 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQ-GYTVYGAA 34 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence 4445789999 899999999999876 47777664
No 459
>PRK06180 short chain dehydrogenase; Provisional
Probab=37.58 E-value=66 Score=27.64 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=25.7
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+.++-|.| .|-||+.+++.+.+. +.+++++.-
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-GHRVVGTVR 36 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeC
Confidence 35699999 899999999998876 477776653
No 460
>PRK06914 short chain dehydrogenase; Provisional
Probab=37.39 E-value=64 Score=27.53 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=26.8
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 1 m~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
|+...+-|.| .|.+|+.+++.+.++ +.+++++..
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~-G~~V~~~~r 35 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKK-GYLVIATMR 35 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhC-CCEEEEEeC
Confidence 5545678888 899999999999877 478877753
No 461
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=37.38 E-value=64 Score=26.38 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=24.2
Q ss_pred EEEEc-cChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 6 IGING-FGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 6 VgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
|-|.| +|.||+.+++.|.+++ .+++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Ccccccccc
Confidence 56899 9999999999999875 666666654
No 462
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.27 E-value=46 Score=30.29 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRD 26 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~ 26 (227)
++||+|+|.|.+|..+...+.+..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC
Confidence 479999999999999988887664
No 463
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=37.27 E-value=57 Score=30.70 Aligned_cols=33 Identities=30% Similarity=0.252 Sum_probs=28.3
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
|| .||.|.|-|.++..+++++.+. +++++++..
T Consensus 1 ~~-kkili~g~g~~~~~~~~aa~~l-G~~vv~~~~ 33 (449)
T TIGR00514 1 ML-DKILIANRGEIALRILRACKEL-GIKTVAVHS 33 (449)
T ss_pred Cc-ceEEEeCCCHHHHHHHHHHHHc-CCeEEEEEC
Confidence 54 5999999999999999999887 599998853
No 464
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=37.10 E-value=55 Score=29.33 Aligned_cols=33 Identities=12% Similarity=0.360 Sum_probs=26.8
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
||+..|.|+|-|-+|...+..|.++ +.+++-|.
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie 33 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLD 33 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHC-CCeEEEEe
Confidence 5667899999999999999888877 46765554
No 465
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.99 E-value=53 Score=30.80 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=22.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
|||.|+|+|+.|+.+++.|. . +.+++ +.|
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~-G~~V~-~~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K-FGGVD-IFD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C-CCeEE-EEc
Confidence 37999999999999999888 5 46654 444
No 466
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=36.96 E-value=60 Score=28.97 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.3
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCC-CceEEEEe
Q 027137 3 KVKIGING-FGRIGRLVARVILQRD-DVELVAVN 34 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~-~~~ivaIn 34 (227)
..+|-|.| .|.||+.+++.|.+.+ ..+++.+.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 46899999 8999999999998764 35666553
No 467
>PRK04148 hypothetical protein; Provisional
Probab=36.11 E-value=48 Score=26.58 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=23.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
.||.++|+| -|..+++.|.+. +.+++||.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaID 46 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVID 46 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEE
Confidence 579999999 787778878765 58999985
No 468
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=36.02 E-value=58 Score=30.18 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=24.9
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.||-|+|.|-+|+.+++.|.+.+--++.-.|-
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 58999999999999999999875334444443
No 469
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=35.93 E-value=1.6e+02 Score=25.54 Aligned_cols=92 Identities=13% Similarity=0.207 Sum_probs=50.0
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeCCCcChhhhhhhhcccccccCCCCcceEEeCCCeEEECCEEEEEEeec
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd~~~~~~~~ayllkyDS~~Gkf~~~~v~~~~~~~l~i~gk~I~v~~~~ 82 (227)
-+|.|+| .|-+|+..++.+...+..+++++.+. .+...++.++ |- . -.++.+. .. . +
T Consensus 151 ~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~~----g~-~-----------~~~~~~~-~~-~-~ 208 (336)
T cd08252 151 KTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASR---PESIAWVKEL----GA-D-----------HVINHHQ-DL-A-E 208 (336)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCC---hhhHHHHHhc----CC-c-----------EEEeCCc-cH-H-H
Confidence 3688999 79999998887766643777777543 2222222111 10 0 1122110 00 0 0
Q ss_pred CCCCCCCccCCccEEEeecCcccCHHhHHHHHhCCCC
Q 027137 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (227)
Q Consensus 83 ~p~~i~W~~~~vDiVve~tG~f~~~~~a~~hl~~Gak 119 (227)
......+ .++|++++|+|.-...+.+..+++.+.+
T Consensus 209 ~i~~~~~--~~~d~vl~~~~~~~~~~~~~~~l~~~g~ 243 (336)
T cd08252 209 QLEALGI--EPVDYIFCLTDTDQHWDAMAELIAPQGH 243 (336)
T ss_pred HHHhhCC--CCCCEEEEccCcHHHHHHHHHHhcCCCE
Confidence 0011122 3799999999864455666777777653
No 470
>PRK07023 short chain dehydrogenase; Provisional
Probab=35.89 E-value=64 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=24.6
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+++-|.| .|.||+.+++.+.+. +.+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~-G~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQP-GIAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhC-CCEEEEEe
Confidence 3899999 899999999998876 47766654
No 471
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=35.84 E-value=67 Score=28.72 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=26.0
Q ss_pred ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 3 KVKIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 3 ~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
..+|-|-| .|-||+.+++.|.+.+ .+|+++.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~ 35 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYS 35 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCC-CEEEEEe
Confidence 36899999 8999999999998774 7777764
No 472
>PRK06847 hypothetical protein; Provisional
Probab=35.51 E-value=62 Score=29.01 Aligned_cols=30 Identities=23% Similarity=0.110 Sum_probs=23.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
+.+|.|+|.|..|-..+..|.+. +++++-+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~ 33 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLV 33 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence 57899999999999888877655 4555444
No 473
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=35.15 E-value=60 Score=29.92 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=26.8
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
||+.-|.|+|.|+-|-..++.|.+.+ ++++.+-
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlE 33 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLE 33 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcC-CeEEEEe
Confidence 56789999999999999999887765 6666553
No 474
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=35.00 E-value=61 Score=29.50 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=24.9
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|...+|.|+|-|..|...+..|.+. +++++-+.
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E 33 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQ-GRSVAVIE 33 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEEc
Confidence 5457899999999999888877655 35555443
No 475
>PLN02686 cinnamoyl-CoA reductase
Probab=34.84 E-value=69 Score=29.23 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=26.9
Q ss_pred CccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 2 GKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 2 ~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+..+|-|-| .|.||+.+++.|.+. +.+++++.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~r 85 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAVD 85 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEeC
Confidence 346899999 899999999999877 478777654
No 476
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=34.68 E-value=55 Score=31.98 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=21.8
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
.||+|+|.|.-|-..++.+.+. +++++..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g~~~~~f 30 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-GLEVTCF 30 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T-EEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCeEE
Confidence 5899999999999999999887 4887765
No 477
>PRK08264 short chain dehydrogenase; Validated
Probab=34.34 E-value=79 Score=26.13 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=23.9
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCc-eEEEEe
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDV-ELVAVN 34 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~-~ivaIn 34 (227)
.++-|.| .|.||+.+++.+.+++ . +++.+.
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G-~~~V~~~~ 38 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARG-AAKVYAAA 38 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-cccEEEEe
Confidence 4799999 8999999999998774 5 555554
No 478
>PRK08013 oxidoreductase; Provisional
Probab=33.95 E-value=63 Score=29.65 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=24.9
Q ss_pred CCccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 1 m~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|+...|.|+|-|..|-..+..|... +++++-+.
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE 33 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGS-GLRVAVLE 33 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhC-CCEEEEEe
Confidence 6567899999999999888777554 46655443
No 479
>PLN02858 fructose-bisphosphate aldolase
Probab=33.81 E-value=46 Score=36.44 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=25.5
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
-|||++|+|.+|..++++|.+.+ +++.+- |.
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G-~~v~v~-dr 35 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSG-FKVQAF-EI 35 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCC-CeEEEE-cC
Confidence 58999999999999999998764 776544 44
No 480
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=33.67 E-value=78 Score=28.87 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=26.0
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
++||.|+|-|..|+.+++++.+. +++++.+..
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~-G~~v~~~~~ 43 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRL-GVEVIAVDR 43 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 46899999999999999987776 477776654
No 481
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=33.65 E-value=82 Score=23.33 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=25.9
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEEeCC
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
..+|-|+|.|.+|..=++.+.+.+ .++..|...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG-AKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCc
Confidence 468999999999998888888775 777767653
No 482
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=33.59 E-value=85 Score=28.27 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=23.4
Q ss_pred cEEEEEcc-ChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G~-GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
-+|.|+|. |.+|...++.+... +.+++++..
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~ 191 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAG 191 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEcC
Confidence 36899995 99999988877655 477776643
No 483
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=33.54 E-value=60 Score=29.45 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=25.2
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
||+|+|-|..|+.+++++.+. +++++++..
T Consensus 1 kililG~g~~~~~l~~aa~~~-G~~v~~~d~ 30 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL-GVEVIAVDR 30 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEeC
Confidence 799999999999999998776 588777643
No 484
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=33.46 E-value=63 Score=30.89 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=23.3
Q ss_pred ccEEEEEccChHHHHHHHHHHcCCCceEEEE
Q 027137 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (227)
Q Consensus 3 ~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaI 33 (227)
..+|+|+|.|..|-..++.+.+.+ ++++.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G-~~v~vf 39 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG-HTVVVF 39 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC-CeEEEE
Confidence 478999999999999888887653 555443
No 485
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.39 E-value=83 Score=28.69 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=25.5
Q ss_pred cEEEEEccC-hHHHHHHHHHHcCCCceEEEEeCC
Q 027137 4 VKIGINGFG-RIGRLVARVILQRDDVELVAVNDP 36 (227)
Q Consensus 4 ~kVgI~G~G-rIGr~~~r~l~~~~~~~ivaInd~ 36 (227)
.+|+|+|.| .+|+.+++.|.+. +..+...+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~-gatVtv~~~~ 192 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA-HCSVTVVHSR 192 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEEEECCC
Confidence 589999975 9999999998876 4777666543
No 486
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=33.38 E-value=77 Score=28.37 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=25.4
Q ss_pred CccEEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 2 ~~~kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
|+.+|.|+|-|-+|-..+..|.+.+ .+|+-+.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G-~~V~vie 34 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERG-ADVTVLE 34 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC-CEEEEEe
Confidence 4689999999999988888887765 4666554
No 487
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.31 E-value=44 Score=30.84 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.4
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE 29 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~ 29 (227)
.+|+|+|+|-=|+.+..+|.+++ ++
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSG-ln 43 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSG-LN 43 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcC-Cc
Confidence 58999999999999888888774 54
No 488
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=33.26 E-value=79 Score=26.53 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=24.0
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEe
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+|-|.| .|.||+.+++.+.+. +.+++.+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~-G~~V~~~~ 31 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQ-GHKVIATG 31 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHC-CCEEEEEE
Confidence 789999 899999999999876 46766654
No 489
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=33.15 E-value=2e+02 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=24.1
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
-++.|.| .|.+|+.+++.+... +.+++++..
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~-g~~v~~~~~ 195 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKAL-GARVIAVTR 195 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCeEEEEeC
Confidence 3689999 699999998888766 477766653
No 490
>PRK12320 hypothetical protein; Provisional
Probab=33.12 E-value=66 Score=32.73 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=25.7
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
||-|.| .|.||+.+++.|.+.+ .+++++..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr 32 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG-HTVSGIAQ 32 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEeC
Confidence 899999 8999999999998774 78877764
No 491
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=32.93 E-value=2.5e+02 Score=24.21 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=23.5
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
-+|.|+| .|.+|..+++.+... +.+++++..
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~ 178 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAG 178 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHc-CCEEEEEeC
Confidence 3688999 799999988877665 477776653
No 492
>PRK08263 short chain dehydrogenase; Provisional
Probab=32.86 E-value=89 Score=26.72 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=26.4
Q ss_pred CCccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 1 m~~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
||..+|-|-| .|.||+.+++.+.+++ .+++.+..
T Consensus 1 ~~~k~vlItGasg~iG~~~a~~l~~~g-~~V~~~~r 35 (275)
T PRK08263 1 MMEKVWFITGASRGFGRAWTEAALERG-DRVVATAR 35 (275)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEEC
Confidence 5555789999 8999999999988764 67665543
No 493
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=32.72 E-value=48 Score=28.77 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=27.9
Q ss_pred CccEEEeecCcccCHHhHHHHHhCCCCEEEEeCC
Q 027137 93 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (227)
Q Consensus 93 ~vDiVve~tG~f~~~~~a~~hl~~GakkVIisap 126 (227)
++|+|++||+...-.+.+...+++|.. |++-.|
T Consensus 37 ~vDaVviatp~~~H~e~a~~aL~aGkh-Vl~~s~ 69 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYAEKILKNGKD-LLIMSV 69 (229)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCC-EEEECC
Confidence 689999999999999999999999964 555333
No 494
>PRK06179 short chain dehydrogenase; Provisional
Probab=32.70 E-value=90 Score=26.45 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=26.3
Q ss_pred CC-ccEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 1 MG-KVKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 1 m~-~~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
|+ ..++-|.| .|.||+.+++.+.++ +.+++++..
T Consensus 1 m~~~~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~r 36 (270)
T PRK06179 1 MSNSKVALVTGASSGIGRATAEKLARA-GYRVFGTSR 36 (270)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence 54 34688899 899999999999877 477766653
No 495
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=32.66 E-value=64 Score=29.18 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=24.4
Q ss_pred EEEEEccChHHHHHHHHHHcCCCceEEEEe
Q 027137 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (227)
Q Consensus 5 kVgI~G~GrIGr~~~r~l~~~~~~~ivaIn 34 (227)
+|||+|-|..|+.+.+++.+. +++++++.
T Consensus 1 ~igiiG~gql~~~l~~aa~~l-G~~v~~~d 29 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL-GIKVHVLD 29 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEEEEC
Confidence 489999999999999988876 48877764
No 496
>PRK09135 pteridine reductase; Provisional
Probab=32.49 E-value=88 Score=25.79 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=25.6
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.++-|.| .|.||+.+.+.+.+. +.+++.+..
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~-g~~v~~~~r 38 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAA-GYRVAIHYH 38 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcC
Confidence 5699999 899999999999876 478777653
No 497
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.38 E-value=90 Score=25.84 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=25.3
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.++-|.| .|.||+.+++.+.+.+ .+++.+.-
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG-ARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 5799999 8999999999998774 67666643
No 498
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=32.25 E-value=1e+02 Score=27.25 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=23.0
Q ss_pred EEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 5 KIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 5 kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
+|-|+| .|.+|...++.+... +++++++..
T Consensus 154 ~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~ 184 (338)
T cd08295 154 TVFVSAASGAVGQLVGQLAKLK-GCYVVGSAG 184 (338)
T ss_pred EEEEecCccHHHHHHHHHHHHc-CCEEEEEeC
Confidence 688999 599999988877665 477766543
No 499
>PLN02583 cinnamoyl-CoA reductase
Probab=31.76 E-value=78 Score=27.74 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=25.8
Q ss_pred cEEEEEc-cChHHHHHHHHHHcCCCceEEEEeC
Q 027137 4 VKIGING-FGRIGRLVARVILQRDDVELVAVND 35 (227)
Q Consensus 4 ~kVgI~G-~GrIGr~~~r~l~~~~~~~ivaInd 35 (227)
.+|-|.| .|.||+.+++.|.+++ .+++++..
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R 38 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQ 38 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEc
Confidence 4689999 8999999999998874 78877653
No 500
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=31.38 E-value=3.7e+02 Score=23.73 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=22.0
Q ss_pred cEEEEEccChHHHHHHHHHHcCCCce-EEEEe
Q 027137 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAVN 34 (227)
Q Consensus 4 ~kVgI~G~GrIGr~~~r~l~~~~~~~-ivaIn 34 (227)
-+|-|.|.|.+|...++.+... +.+ ++++.
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~ 198 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLR-GAGRIIAVG 198 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEe
Confidence 3688999999999988877655 464 55543
Done!