BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027139
         (227 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720 OS=Arabidopsis thaliana
           GN=At3g49720 PE=1 SV=1
          Length = 261

 Score =  348 bits (894), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/212 (81%), Positives = 190/212 (89%), Gaps = 1/212 (0%)

Query: 1   MSRRPVSSTRRLVDTGSFPFTGALQSKSRSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGD 60
           M+RR V STRR+ D GSFPF GAL SKSRSSPLLS+ LVLVGA LLIGYA+SG GIF   
Sbjct: 1   MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSI 60

Query: 61  KAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGV 120
           K  VS++ GD+SCT+E+QRAIP+LKKAYGD M KVLHVGPDTCSVVS+LLKEEETEAWGV
Sbjct: 61  KE-VSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGV 119

Query: 121 EPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPD 180
           EPYDIEDAD+ CKS V KG+VRVADIKFPLPYRAKSF LVIVSDALDYLSPKYLNKT+P+
Sbjct: 120 EPYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPE 179

Query: 181 LARVASDGVLIFAGYPGQQRAKVAELSKFGRP 212
           LARVASDGV++FAG PGQQRAKVAELSKFGRP
Sbjct: 180 LARVASDGVVLFAGLPGQQRAKVAELSKFGRP 211


>sp|Q49XP0|CVFC_STAS1 Conserved virulence factor C OS=Staphylococcus saprophyticus subsp.
           saprophyticus (strain ATCC 15305 / DSM 20229) GN=cvfC
           PE=3 SV=1
          Length = 372

 Score = 33.5 bits (75), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 17  SFPFTGALQSKSRSSPLLSVGLVLVGAF---LLIGYAFSGSGIFGGDKAAVSRIEGDFSC 73
            FP  G   S+   +PL    +VL+G      ++ Y F G         AV R  GD  C
Sbjct: 232 DFPLLGDAVSEEEKTPLRREAIVLLGMIEDKAVLPYLFKG---LHDKSPAVRRTAGD--C 286

Query: 74  TSEI--QRAIPILKKAYGDSMHKVL 96
            S++  ++A+P ++KA  D  HK++
Sbjct: 287 LSDLGFKQALPEMEKALDDP-HKIV 310


>sp|Q57678|NUCS_METJA Endonuclease NucS OS=Methanocaldococcus jannaschii (strain ATCC
           43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
           GN=nucS PE=3 SV=1
          Length = 263

 Score = 32.0 bits (71), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 56  IFGGDKA------AVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTL 109
           I G DK        + R   D    S+++R +   K  YG+   + + V P   +    L
Sbjct: 167 ILGKDKENKWVILELKRRRADLQAVSQLKRYVEYFKNKYGEDKVRGILVSPSLTTGAEKL 226

Query: 110 LKEEETEAWGVEP 122
           LKEE  E   + P
Sbjct: 227 LKEENLEFKRLNP 239


>sp|P07067|VG37_BPT2 Long tail fiber protein p37 OS=Enterobacteria phage T2 GN=37 PE=3
           SV=1
          Length = 1341

 Score = 31.2 bits (69), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 12  LVDTGSFPFTGALQSKSRSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGDKAAVSRIEGDF 71
           +  TG +  TG          L+   +V  G ++   Y  +GSG + G   A + I  D 
Sbjct: 62  ITQTGDYTQTGKFN-------LIGPQIVASGGYIEFNYRTTGSGAWSGQHTAKAPIFVDL 114

Query: 72  SCTSEIQRAIPILKKAYGD 90
           S  +      PI+K+ + D
Sbjct: 115 SSATSTSEYNPIIKQRFKD 133


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.139    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,477,028
Number of Sequences: 539616
Number of extensions: 3525089
Number of successful extensions: 8812
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8805
Number of HSP's gapped (non-prelim): 9
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)