Query 027139
Match_columns 227
No_of_seqs 27 out of 29
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 05:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07021 MetW: Methionine bios 98.6 2.3E-08 4.9E-13 85.6 2.7 97 92-195 14-112 (193)
2 PF08241 Methyltransf_11: Meth 97.3 0.00028 6.2E-09 47.1 3.7 92 96-192 1-95 (95)
3 TIGR03587 Pse_Me-ase pseudamin 97.0 0.0011 2.3E-08 54.9 4.8 98 93-195 45-143 (204)
4 PF13489 Methyltransf_23: Meth 96.7 0.0014 3E-08 48.1 2.9 94 90-194 21-115 (161)
5 TIGR02081 metW methionine bios 96.0 0.015 3.2E-07 46.4 5.4 95 93-194 15-111 (194)
6 TIGR02021 BchM-ChlM magnesium 95.7 0.019 4.1E-07 46.3 4.7 97 93-197 57-160 (219)
7 PTZ00098 phosphoethanolamine N 95.7 0.018 3.8E-07 49.0 4.7 122 70-195 31-157 (263)
8 PRK07580 Mg-protoporphyrin IX 95.1 0.062 1.3E-06 42.7 5.9 108 79-192 51-163 (230)
9 PRK10258 biotin biosynthesis p 95.0 0.042 9.2E-07 45.0 4.7 99 92-196 43-142 (251)
10 TIGR02072 BioC biotin biosynth 94.6 0.11 2.4E-06 40.5 5.8 98 93-195 36-136 (240)
11 TIGR00740 methyltransferase, p 94.5 0.15 3.3E-06 41.7 6.7 116 74-194 36-161 (239)
12 PRK06202 hypothetical protein; 94.4 0.064 1.4E-06 43.7 4.5 100 90-192 59-165 (232)
13 PRK05785 hypothetical protein; 94.3 0.18 3.8E-06 42.2 6.9 98 92-197 52-150 (226)
14 cd02440 AdoMet_MTases S-adenos 93.7 0.12 2.5E-06 33.1 3.7 97 94-193 1-103 (107)
15 PF08242 Methyltransf_12: Meth 93.6 0.041 9E-07 38.6 1.6 89 96-186 1-94 (99)
16 PLN02336 phosphoethanolamine N 93.1 0.092 2E-06 47.3 3.5 98 93-193 39-141 (475)
17 PRK11036 putative S-adenosyl-L 92.7 0.21 4.6E-06 41.5 4.8 99 89-193 42-148 (255)
18 PLN02233 ubiquinone biosynthes 91.4 0.77 1.7E-05 39.1 6.8 127 65-194 23-182 (261)
19 TIGR02752 MenG_heptapren 2-hep 90.8 0.5 1.1E-05 38.0 4.8 98 93-193 47-150 (231)
20 PRK15451 tRNA cmo(5)U34 methyl 90.6 0.67 1.4E-05 38.8 5.6 121 71-194 36-164 (247)
21 PF12847 Methyltransf_18: Meth 90.2 0.23 4.9E-06 35.0 2.2 100 93-193 3-110 (112)
22 PRK11207 tellurite resistance 90.2 0.74 1.6E-05 37.4 5.4 109 73-192 18-132 (197)
23 PRK00312 pcm protein-L-isoaspa 90.1 1.1 2.4E-05 36.1 6.3 99 92-201 79-183 (212)
24 smart00828 PKS_MT Methyltransf 89.7 0.59 1.3E-05 37.4 4.4 98 93-195 1-105 (224)
25 PLN02244 tocopherol O-methyltr 89.2 0.95 2.1E-05 40.1 5.7 99 91-194 118-223 (340)
26 TIGR00477 tehB tellurite resis 88.9 0.79 1.7E-05 37.1 4.7 127 74-211 19-160 (195)
27 PRK01683 trans-aconitate 2-met 88.5 1.3 2.9E-05 36.4 5.7 99 90-194 30-130 (258)
28 TIGR00452 methyltransferase, p 87.9 0.86 1.9E-05 41.0 4.7 97 93-193 123-224 (314)
29 TIGR02469 CbiT precorrin-6Y C5 87.6 1.3 2.9E-05 31.1 4.5 99 92-195 20-123 (124)
30 PRK08317 hypothetical protein; 86.3 1.1 2.5E-05 34.7 4.0 99 93-194 21-124 (241)
31 PRK13944 protein-L-isoaspartat 86.2 2.6 5.6E-05 34.4 6.2 93 93-194 74-173 (205)
32 PRK15068 tRNA mo(5)U34 methylt 85.4 1.3 2.8E-05 39.4 4.3 98 93-194 124-226 (322)
33 TIGR01934 MenG_MenH_UbiE ubiqu 85.2 1.3 2.8E-05 34.4 3.8 98 93-195 41-144 (223)
34 PLN02585 magnesium protoporphy 85.0 1.6 3.5E-05 39.3 4.8 100 92-197 145-252 (315)
35 PF13649 Methyltransf_25: Meth 84.4 0.42 9.2E-06 34.0 0.7 90 95-187 1-99 (101)
36 PRK00216 ubiE ubiquinone/menaq 84.0 1.6 3.6E-05 34.2 3.9 99 93-194 53-158 (239)
37 PRK12335 tellurite resistance 83.9 1.4 3.1E-05 37.7 3.8 108 74-192 109-221 (287)
38 PRK11088 rrmA 23S rRNA methylt 83.5 6.7 0.00015 33.2 7.7 102 82-198 76-184 (272)
39 PLN02396 hexaprenyldihydroxybe 83.5 1.8 4E-05 39.0 4.6 96 94-193 134-234 (322)
40 TIGR01983 UbiG ubiquinone bios 83.3 2.9 6.2E-05 33.3 5.1 95 93-194 47-149 (224)
41 PF11899 DUF3419: Protein of u 83.2 0.67 1.5E-05 43.0 1.7 39 154-192 293-332 (380)
42 PRK05134 bifunctional 3-demeth 82.3 1.4 3.1E-05 35.5 3.1 102 92-196 49-153 (233)
43 TIGR03534 RF_mod_PrmC protein- 81.3 5.4 0.00012 32.0 6.0 116 93-210 89-233 (251)
44 PF13847 Methyltransf_31: Meth 81.2 2 4.4E-05 32.6 3.4 102 90-197 2-112 (152)
45 PLN02336 phosphoethanolamine N 80.0 4.1 8.9E-05 36.9 5.5 97 93-194 268-369 (475)
46 smart00138 MeTrc Methyltransfe 79.2 4.9 0.00011 34.6 5.5 51 143-194 191-241 (264)
47 PRK08287 cobalt-precorrin-6Y C 78.5 3.1 6.7E-05 32.9 3.8 110 93-210 33-148 (187)
48 PRK13942 protein-L-isoaspartat 76.8 9.3 0.0002 31.5 6.3 93 93-193 78-175 (212)
49 TIGR00417 speE spermidine synt 76.2 3.2 6.9E-05 35.5 3.5 125 69-199 53-192 (270)
50 PRK00121 trmB tRNA (guanine-N( 75.8 1.9 4E-05 35.3 1.9 135 79-213 28-176 (202)
51 PLN02490 MPBQ/MSBQ methyltrans 75.5 3.6 7.8E-05 37.7 3.9 96 93-194 115-215 (340)
52 TIGR00537 hemK_rel_arch HemK-r 73.0 6.6 0.00014 30.8 4.3 116 93-212 21-159 (179)
53 TIGR00406 prmA ribosomal prote 71.4 8.9 0.00019 33.2 5.1 107 93-205 161-270 (288)
54 PRK11705 cyclopropane fatty ac 70.8 9.7 0.00021 34.9 5.4 107 81-193 156-266 (383)
55 PRK00517 prmA ribosomal protei 63.8 22 0.00048 29.9 5.8 108 91-210 119-230 (250)
56 PF05401 NodS: Nodulation prot 63.2 6.8 0.00015 34.5 2.8 96 93-194 45-146 (201)
57 PRK14103 trans-aconitate 2-met 58.2 20 0.00043 29.8 4.6 93 92-193 30-125 (255)
58 TIGR00080 pimt protein-L-isoas 58.1 23 0.00049 28.9 4.8 108 93-210 79-191 (215)
59 PRK03612 spermidine synthase; 58.0 20 0.00043 34.1 5.1 105 91-199 297-421 (521)
60 PF12147 Methyltransf_20: Puta 58.0 6.8 0.00015 36.7 2.0 121 75-197 121-252 (311)
61 smart00650 rADc Ribosomal RNA 57.2 10 0.00022 29.7 2.6 94 93-192 15-111 (169)
62 PF02562 PhoH: PhoH-like prote 56.2 19 0.00041 31.1 4.2 66 130-202 94-161 (205)
63 PF01135 PCMT: Protein-L-isoas 56.0 13 0.00029 31.6 3.2 99 93-200 74-179 (209)
64 PRK09328 N5-glutamine S-adenos 55.0 28 0.0006 28.7 4.9 68 93-162 110-181 (275)
65 PF10717 ODV-E18: Occlusion-de 53.2 12 0.00026 29.7 2.3 32 29-60 23-54 (85)
66 PF01209 Ubie_methyltran: ubiE 49.6 23 0.0005 30.3 3.8 97 93-192 49-151 (233)
67 PF08955 BofC_C: BofC C-termin 47.8 10 0.00022 29.0 1.2 17 184-200 15-32 (75)
68 PLN02232 ubiquinone biosynthes 46.8 15 0.00033 28.9 2.1 48 141-191 30-78 (160)
69 cd03128 GAT_1 Type 1 glutamine 45.3 52 0.0011 19.9 3.9 23 202-224 68-90 (92)
70 PRK00440 rfc replication facto 44.2 7.4 0.00016 32.3 -0.0 50 144-202 3-53 (319)
71 PRK00811 spermidine synthase; 44.0 48 0.001 28.9 4.9 122 72-199 60-197 (283)
72 PRK03522 rumB 23S rRNA methylu 42.3 26 0.00057 30.6 3.0 107 93-206 175-286 (315)
73 PLN02823 spermine synthase 42.3 44 0.00096 30.6 4.6 113 70-194 85-220 (336)
74 TIGR02085 meth_trns_rumB 23S r 42.2 19 0.00041 32.6 2.2 107 93-206 235-346 (374)
75 PRK11873 arsM arsenite S-adeno 42.1 51 0.0011 27.5 4.6 102 92-196 78-185 (272)
76 PRK13168 rumA 23S rRNA m(5)U19 40.9 24 0.00051 32.5 2.7 110 93-210 299-416 (443)
77 TIGR02480 fliN flagellar motor 39.7 10 0.00022 27.4 0.1 30 174-203 37-66 (77)
78 TIGR00438 rrmJ cell division p 39.0 61 0.0013 25.7 4.4 115 75-204 21-156 (188)
79 PF13506 Glyco_transf_21: Glyc 36.5 20 0.00043 29.0 1.3 39 155-196 30-68 (175)
80 PF06040 Adeno_E3: Adenovirus 35.3 36 0.00078 28.7 2.6 44 9-52 59-108 (127)
81 TIGR01397 fliM_switch flagella 35.0 13 0.00029 32.4 0.2 31 174-204 282-312 (320)
82 PRK14967 putative methyltransf 34.8 42 0.00091 27.5 3.0 68 93-162 38-107 (223)
83 PRK06033 hypothetical protein; 34.2 14 0.00029 27.9 0.0 30 174-203 36-65 (83)
84 PF02887 PK_C: Pyruvate kinase 33.6 15 0.00032 27.6 0.2 21 116-136 57-77 (117)
85 cd02979 PHOX_C FAD-dependent P 32.3 39 0.00086 27.6 2.4 50 153-209 3-54 (167)
86 TIGR00479 rumA 23S rRNA (uraci 31.6 29 0.00062 31.5 1.7 110 93-210 294-412 (431)
87 TIGR00536 hemK_fam HemK family 30.8 2.2E+02 0.0047 24.6 6.8 68 93-162 116-188 (284)
88 PF01052 SpoA: Surface present 30.7 16 0.00034 25.7 -0.1 30 174-203 37-66 (77)
89 PF14035 YlzJ: YlzJ-like prote 30.1 19 0.00042 26.2 0.2 14 160-173 46-59 (66)
90 PF00326 Peptidase_S9: Prolyl 29.8 35 0.00075 26.8 1.6 51 50-100 21-71 (213)
91 PF03141 Methyltransf_29: Puta 28.6 77 0.0017 31.6 4.1 122 75-202 103-227 (506)
92 TIGR03762 exosort_arch archaea 28.2 11 0.00024 34.8 -1.5 48 173-222 75-126 (274)
93 COG3897 Predicted methyltransf 27.8 69 0.0015 29.0 3.4 112 93-210 81-194 (218)
94 PRK08433 flagellar motor switc 27.8 20 0.00044 28.7 0.0 31 174-204 61-91 (111)
95 PF03815 LCCL: LCCL domain; I 27.7 30 0.00065 26.4 0.9 41 92-141 18-58 (96)
96 COG0312 TldD Predicted Zn-depe 27.5 20 0.00043 33.0 -0.1 100 81-193 260-372 (454)
97 PRK10909 rsmD 16S rRNA m(2)G96 26.4 73 0.0016 26.9 3.1 95 93-194 55-159 (199)
98 COG1409 Icc Predicted phosphoh 26.1 45 0.00097 26.6 1.7 40 140-195 3-42 (301)
99 PF01558 POR: Pyruvate ferredo 26.0 86 0.0019 24.7 3.3 78 105-196 11-88 (173)
100 PRK14968 putative methyltransf 25.8 2.5E+02 0.0053 21.3 5.6 69 93-164 25-98 (188)
101 TIGR03533 L3_gln_methyl protei 24.9 1.8E+02 0.0039 25.4 5.3 68 93-162 123-195 (284)
102 PF13511 DUF4124: Domain of un 24.6 37 0.00081 22.7 0.9 23 184-206 19-41 (60)
103 PF02677 DUF208: Uncharacteriz 24.6 35 0.00075 29.4 0.9 41 95-135 2-54 (176)
104 KOG0829 60S ribosomal protein 24.2 30 0.00064 30.3 0.4 10 144-153 141-150 (169)
105 PF08534 Redoxin: Redoxin; In 24.1 1.1E+02 0.0025 22.6 3.5 42 158-199 86-136 (146)
106 PRK06922 hypothetical protein; 23.2 84 0.0018 32.3 3.4 99 93-193 420-536 (677)
107 PF05157 T2SE_Nter: Type II se 23.1 15 0.00034 25.7 -1.3 65 148-214 20-86 (109)
108 PF12738 PTCB-BRCT: twin BRCT 23.1 56 0.0012 21.8 1.5 20 189-208 2-21 (63)
109 PRK04457 spermidine synthase; 22.8 22 0.00048 30.7 -0.6 99 91-192 66-175 (262)
110 PF01978 TrmB: Sugar-specific 22.4 49 0.0011 22.5 1.1 21 127-147 38-58 (68)
111 PRK14958 DNA polymerase III su 22.1 31 0.00067 33.1 0.1 46 152-205 10-56 (509)
112 PRK11783 rlmL 23S rRNA m(2)G24 22.0 1.1E+02 0.0023 30.4 3.8 123 93-217 540-679 (702)
113 TIGR00091 tRNA (guanine-N(7)-) 21.7 71 0.0015 25.8 2.1 114 84-198 9-136 (194)
114 PF13624 SurA_N_3: SurA N-term 21.6 80 0.0017 24.0 2.3 88 33-124 11-102 (154)
115 TIGR03438 probable methyltrans 21.6 2.2E+02 0.0047 24.9 5.2 99 93-192 65-175 (301)
116 PRK12402 replication factor C 20.5 36 0.00078 28.6 0.2 48 148-204 5-53 (337)
117 PLN02366 spermidine synthase 20.1 1.5E+02 0.0033 26.8 4.0 123 68-199 71-212 (308)
118 PF04016 DUF364: Domain of unk 20.0 59 0.0013 26.2 1.3 28 171-198 71-99 (147)
No 1
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.60 E-value=2.3e-08 Score=85.55 Aligned_cols=97 Identities=24% Similarity=0.425 Sum_probs=86.2
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcc-eeEeeecCCCC-CCCCCccEEEeccccccc
Q 027139 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPLP-YRAKSFPLVIVSDALDYL 169 (227)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGi-VRvADIkfpLP-YR~kSFslVIVSDaLDyL 169 (227)
-.+||++|-........|.++.+++++|||-. +.+..+-|+||+ |--.|+.-.|+ |..+||+.||.|++|..+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid-----~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEID-----PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecC-----HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 37999999999999999999999999999832 345677799999 99999999997 999999999999999998
Q ss_pred ChhhhccccccchhhccCceEEEecC
Q 027139 170 SPKYLNKTLPDLARVASDGVLIFAGY 195 (227)
Q Consensus 170 spryLNkTLPeLaRvsadglViF~G~ 195 (227)
++-.+.|-|+.||...++|-|.-+
T Consensus 89 --~~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 89 --RRPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred --hHHHHHHHHHHHhcCeEEEEecCh
Confidence 567788999999999999988654
No 2
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.33 E-value=0.00028 Score=47.11 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=67.5
Q ss_pred eeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcc--eeEeeecCCCCCCCCCccEEEecccccccChhh
Q 027139 96 LHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKY 173 (227)
Q Consensus 96 LHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGi--VRvADIkfpLPYR~kSFslVIVSDaLDyLspry 173 (227)
|-+|-.+......|.+....+.||+|+..- .-..|+...++.- ++.+|+. .+|+..+||++|+..+++.|+ ..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~--~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~~--~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE--MLEQARKRLKNEGVSFRQGDAE-DLPFPDNSFDVVFSNSVLHHL--ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH--HHHHHHHHTTTSTEEEEESBTT-SSSS-TT-EEEEEEESHGGGS--SH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH--HHHHHHhcccccCchheeehHH-hCccccccccccccccceeec--cC
Confidence 457888888888888888899999998753 4455666555443 7778854 559999999999999999999 77
Q ss_pred hccccccchhhcc-CceEEE
Q 027139 174 LNKTLPDLARVAS-DGVLIF 192 (227)
Q Consensus 174 LNkTLPeLaRvsa-dglViF 192 (227)
..+.+-|+.|+-. +|.++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 8889999999754 444443
No 3
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.01 E-value=0.0011 Score=54.86 Aligned_cols=98 Identities=19% Similarity=0.305 Sum_probs=74.7
Q ss_pred ceeeeecCCcchhhhhcccc-ccccccccccccccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEecccccccCh
Q 027139 93 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 171 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDyLsp 171 (227)
.+||-||-.|-.....|.+. ...+.+|||+-+ ++-..++.-..+--+..+|+.- |+...+|++|+...+|.|++|
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCCH
Confidence 57999999999888888765 467899997753 2233333323334466778765 788899999999999999999
Q ss_pred hhhccccccchhhccCceEEEecC
Q 027139 172 KYLNKTLPDLARVASDGVLIFAGY 195 (227)
Q Consensus 172 ryLNkTLPeLaRvsadglViF~G~ 195 (227)
.++.+.+-++.|++.. .|+++.+
T Consensus 121 ~~~~~~l~el~r~~~~-~v~i~e~ 143 (204)
T TIGR03587 121 DNLPTAYRELYRCSNR-YILIAEY 143 (204)
T ss_pred HHHHHHHHHHHhhcCc-EEEEEEe
Confidence 9999999999999854 5555553
No 4
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.72 E-value=0.0014 Score=48.11 Aligned_cols=94 Identities=24% Similarity=0.295 Sum_probs=65.9
Q ss_pred cccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEeccccccc
Q 027139 90 DSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (227)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDyL 169 (227)
+.=.+||-+|+.+......| ++...+..|+||.+-.... +-.+......--.+...++|++|+.+++|.|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 45569999999999766555 6667799999998533222 11122111111344578899999999999999
Q ss_pred Chhhhccccccchhhcc-CceEEEec
Q 027139 170 SPKYLNKTLPDLARVAS-DGVLIFAG 194 (227)
Q Consensus 170 spryLNkTLPeLaRvsa-dglViF~G 194 (227)
. .....|-++.|+-. +|.++|+-
T Consensus 92 ~--d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 92 P--DPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp S--HHHHHHHHHHHCEEEEEEEEEEE
T ss_pred c--cHHHHHHHHHHhcCCCCEEEEEE
Confidence 8 47788889988765 57776665
No 5
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.04 E-value=0.015 Score=46.35 Aligned_cols=95 Identities=25% Similarity=0.435 Sum_probs=67.0
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcc-eeEeeecCCC-CCCCCCccEEEecccccccC
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGI-VRVADIKFPL-PYRAKSFPLVIVSDALDYLS 170 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGi-VRvADIkfpL-PYR~kSFslVIVSDaLDyLs 170 (227)
.+||.+|-.+..+...|.+.....++|||+-+ +.-..|+ ++|+ +..+|+.-.+ |+..++|++|+.+.++.|+.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~---~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACV---ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHH---HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 37999999999887777666666789998643 1112222 2332 3457776445 47788999999999999984
Q ss_pred hhhhccccccchhhccCceEEEec
Q 027139 171 PKYLNKTLPDLARVASDGVLIFAG 194 (227)
Q Consensus 171 pryLNkTLPeLaRvsadglViF~G 194 (227)
...+.|-++.|+...+++.|..
T Consensus 90 --d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 90 --NPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred --CHHHHHHHHHHhCCeEEEEcCC
Confidence 3567788999998877666543
No 6
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.68 E-value=0.019 Score=46.26 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=70.1
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc-----eeEeeecCCCCCCCCCccEEEeccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVIVSDA 165 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGi-----VRvADIkfpLPYR~kSFslVIVSDa 165 (227)
.+||-+|-.+-.+...|.+. ..+.+|||+-+ ++.+..+.+ ..+. ..++|+... | ++|++|+.+|.
T Consensus 57 ~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~---~~~~~~~i~~~~~d~~~~-~---~~fD~ii~~~~ 128 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQ---GRDVAGNVEFEVNDLLSL-C---GEFDIVVCMDV 128 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEECChhhC-C---CCcCEEEEhhH
Confidence 57999999998887777654 45788887642 223333332 2332 456777553 3 89999999999
Q ss_pred ccccChhhhccccccchhhccCceEEEecCCC
Q 027139 166 LDYLSPKYLNKTLPDLARVASDGVLIFAGYPG 197 (227)
Q Consensus 166 LDyLspryLNkTLPeLaRvsadglViF~G~Pg 197 (227)
+.|+++..+.+.+=++.|+...++++.....+
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 99999888999999999988877776654433
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.66 E-value=0.018 Score=49.03 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=78.9
Q ss_pred CccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhccee--Eee
Q 027139 70 DFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVR--VAD 145 (227)
Q Consensus 70 ~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGiVR--vAD 145 (227)
++-=+.++..+.-++++.-=+.-.+||.||..+=.....|.+.-..+..|+++-+ ++.+..+++. ...|+ .+|
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D 107 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEAND 107 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECC
Confidence 4444444444444454443244568999999886655445443345677777542 3334444332 22333 466
Q ss_pred ecCCCCCCCCCccEEEecccccccChhhhccccccchhh-ccCceEEEecC
Q 027139 146 IKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGVLIFAGY 195 (227)
Q Consensus 146 IkfpLPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRv-sadglViF~G~ 195 (227)
+. .+|+...+|++|+..|++-++++.-..+.|-++.|+ ..+|.++++.+
T Consensus 108 ~~-~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 108 IL-KKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred cc-cCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 63 577888999999999999888776777888888886 66788888864
No 8
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.14 E-value=0.062 Score=42.67 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=69.4
Q ss_pred hhhhHHHHHhcc-ccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc--eeEeeecCCCCCC
Q 027139 79 RAIPILKKAYGD-SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI--VRVADIKFPLPYR 153 (227)
Q Consensus 79 ~aiP~LkkaYGd-sM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGi--VRvADIkfpLPYR 153 (227)
.++..|+. ||. .-.+||-||..|-.....|.+.. .+..|+|+-+ ++.+..+++..-.... ...+|+ +.-
T Consensus 51 ~~~~~l~~-~~~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~~ 124 (230)
T PRK07580 51 TVLSWLPA-DGDLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL----ESL 124 (230)
T ss_pred HHHHHHHh-cCCCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc----hhc
Confidence 34445543 222 34689999999988777776653 4577776522 2334444332111011 334553 333
Q ss_pred CCCccEEEecccccccChhhhccccccchhhccCceEEE
Q 027139 154 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIF 192 (227)
Q Consensus 154 ~kSFslVIVSDaLDyLspryLNkTLPeLaRvsadglViF 192 (227)
..+|++|+.++++.+.+...+.+.+-++.|+...+++|.
T Consensus 125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 589999999999999888889999999999877666543
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.00 E-value=0.042 Score=45.02 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=67.5
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEecccccccCh
Q 027139 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 171 (227)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDyLsp 171 (227)
-.+||.+|-.|..+...| .+...+..|+++.. +.-..|+.....--+..+|+.- +|+...+|++|+.+.++.|..
T Consensus 43 ~~~vLDiGcG~G~~~~~l-~~~~~~v~~~D~s~--~~l~~a~~~~~~~~~~~~d~~~-~~~~~~~fD~V~s~~~l~~~~- 117 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYW-RERGSQVTALDLSP--PMLAQARQKDAADHYLAGDIES-LPLATATFDLAWSNLAVQWCG- 117 (251)
T ss_pred CCeEEEeeCCCCHHHHHH-HHcCCeEEEEECCH--HHHHHHHhhCCCCCEEEcCccc-CcCCCCcEEEEEECchhhhcC-
Confidence 468999999997654444 44456778887643 2222333322222345778743 677788999999999998864
Q ss_pred hhhccccccchhhcc-CceEEEecCC
Q 027139 172 KYLNKTLPDLARVAS-DGVLIFAGYP 196 (227)
Q Consensus 172 ryLNkTLPeLaRvsa-dglViF~G~P 196 (227)
.+.+.|.++.|+-. +|.++|+.+.
T Consensus 118 -d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 118 -NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred -CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 46789999999866 5888887643
No 10
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=94.57 E-value=0.11 Score=40.54 Aligned_cols=98 Identities=28% Similarity=0.394 Sum_probs=64.1
Q ss_pred ceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhh-cceeEeeecCCCCCCCCCccEEEecccccccC
Q 027139 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHK-GIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVrK-GiVRvADIkfpLPYR~kSFslVIVSDaLDyLs 170 (227)
.+||.+|..+-.....|.+.. ....+|+|+-. +.-..++..... -.+-++|+. .+|+-..+|++||.+..+.|+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhcc
Confidence 579999999988777666553 23347777632 222233332221 133456665 4566678999999999999884
Q ss_pred hhhhccccccchhh-ccCceEEEecC
Q 027139 171 PKYLNKTLPDLARV-ASDGVLIFAGY 195 (227)
Q Consensus 171 pryLNkTLPeLaRv-sadglViF~G~ 195 (227)
. .++.|.++.|+ ..+|.++|+.+
T Consensus 113 ~--~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 D--LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred C--HHHHHHHHHHHcCCCcEEEEEeC
Confidence 3 56788888875 55788888753
No 11
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=94.45 E-value=0.15 Score=41.73 Aligned_cols=116 Identities=19% Similarity=0.295 Sum_probs=77.2
Q ss_pred hHHHHhhhhHHHHHhccccceeeeecCCcchhhhhcccc---ccccccccccccccchhHHHHhhhhh-c-----ceeEe
Q 027139 74 TSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE---EETEAWGVEPYDIEDADARCKSLVHK-G-----IVRVA 144 (227)
Q Consensus 74 t~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE---eetEAWGVEPydiedad~~CKsLVrK-G-----iVRvA 144 (227)
-.++...+--|++.+...-.+||.+|-.|=.....|++. ...+..|||+.+ +.-..|+...++ + -+...
T Consensus 36 y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~ 113 (239)
T TIGR00740 36 YSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCN 113 (239)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEEC
Confidence 345555555566777666678999998886665555553 467788888753 333334433322 1 23445
Q ss_pred eecCCCCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEEec
Q 027139 145 DIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAG 194 (227)
Q Consensus 145 DIkfpLPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRvs-adglViF~G 194 (227)
|+. -+|. ++|++|+.+.++.|+++....+.|.++.|+- .+|.++++.
T Consensus 114 d~~-~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 114 DIR-HVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred Chh-hCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 653 2333 3589999999999999888888899998875 578888774
No 12
>PRK06202 hypothetical protein; Provisional
Probab=94.44 E-value=0.064 Score=43.75 Aligned_cols=100 Identities=22% Similarity=0.173 Sum_probs=66.1
Q ss_pred cccceeeeecCCcchhhhhccccc-----cccccccccccccchhHHHHhhhh-hc-ceeEeeecCCCCCCCCCccEEEe
Q 027139 90 DSMHKVLHVGPDTCSVVSTLLKEE-----ETEAWGVEPYDIEDADARCKSLVH-KG-IVRVADIKFPLPYRAKSFPLVIV 162 (227)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkEe-----etEAWGVEPydiedad~~CKsLVr-KG-iVRvADIkfpLPYR~kSFslVIV 162 (227)
..-.+||-+|-.|-.+...|.+.. ..+.+|||+.+ ++-..++.... .+ -+++.|.. -+|....+|++|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~-~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVTFRQAVSD-ELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCeEEEEecc-cccccCCCccEEEE
Confidence 344689999999877655554321 24788888754 23333333322 12 23344332 12335689999999
Q ss_pred cccccccChhhhccccccchhhccCceEEE
Q 027139 163 SDALDYLSPKYLNKTLPDLARVASDGVLIF 192 (227)
Q Consensus 163 SDaLDyLspryLNkTLPeLaRvsadglViF 192 (227)
+.+|.|+++..+.+.|-++.|+...+++|.
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcCeeEEEe
Confidence 999999999989999999999998544443
No 13
>PRK05785 hypothetical protein; Provisional
Probab=94.30 E-value=0.18 Score=42.21 Aligned_cols=98 Identities=23% Similarity=0.253 Sum_probs=67.7
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEecccccccCh
Q 027139 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSP 171 (227)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDyLsp 171 (227)
-.+||-||-.|..+...|.+.-+.+..|||+-+ +.=..++ +|.-...+|.. .||+...||++|+.+.+|.++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~---~~~~~~~~d~~-~lp~~d~sfD~v~~~~~l~~~~- 124 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNL---VADDKVVGSFE-ALPFRDKSFDVVMSSFALHASD- 124 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHH---hccceEEechh-hCCCCCCCEEEEEecChhhccC-
Confidence 469999999999876666554356888988732 1111111 12223356654 5789999999999999998875
Q ss_pred hhhccccccchhhccCce-EEEecCCC
Q 027139 172 KYLNKTLPDLARVASDGV-LIFAGYPG 197 (227)
Q Consensus 172 ryLNkTLPeLaRvsadgl-ViF~G~Pg 197 (227)
-+.+.|-|+.||-...+ ++-.+.|.
T Consensus 125 -d~~~~l~e~~RvLkp~~~ile~~~p~ 150 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQVGFIAMGKPD 150 (226)
T ss_pred -CHHHHHHHHHHHhcCceEEEEeCCCC
Confidence 35789999999998765 44445554
No 14
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.69 E-value=0.12 Score=33.11 Aligned_cols=97 Identities=24% Similarity=0.262 Sum_probs=58.7
Q ss_pred eeeeecCCcchhhhhccccccccccccccccccchhHHHHh-----hhhhcceeEeeecCCCCCCCCCccEEEecccccc
Q 027139 94 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKS-----LVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 94 kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKs-----LVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDy 168 (227)
+++++|..+-.....+++....+.+|+|+-+ ++-..++. ...+--+...|+.-..+....+|++|+....+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 5789999988777777775677888887532 11112221 1122233445655554446778999999888877
Q ss_pred cChhhhccccccchh-hccCceEEEe
Q 027139 169 LSPKYLNKTLPDLAR-VASDGVLIFA 193 (227)
Q Consensus 169 LspryLNkTLPeLaR-vsadglViF~ 193 (227)
. +....+.+-.+.+ +..+|.++++
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 3344444444333 4578888876
No 15
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=93.56 E-value=0.041 Score=38.61 Aligned_cols=89 Identities=25% Similarity=0.326 Sum_probs=46.2
Q ss_pred eeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhhhhcc--eeEeeecCCCCCCCCCccEEEecccccccC
Q 027139 96 LHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKGI--VRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (227)
Q Consensus 96 LHVGPdtC~VVs~LLkE-eetEAWGVEPyd--iedad~~CKsLVrKGi--VRvADIkfpLPYR~kSFslVIVSDaLDyLs 170 (227)
|-||..|......|+++ ...+-.|+++.. ++.+..+-+..-.... ++..+.....+.-.++|++|+.+..|.|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 57899999999888877 677778887653 5556655555544433 33333333333333799999999999999
Q ss_pred hhhhccccccchhhcc
Q 027139 171 PKYLNKTLPDLARVAS 186 (227)
Q Consensus 171 pryLNkTLPeLaRvsa 186 (227)
+.+...|-.+.++=+
T Consensus 80 -~~~~~~l~~~~~~L~ 94 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLK 94 (99)
T ss_dssp -S-HHHHHHHHTTT-T
T ss_pred -hhHHHHHHHHHHHcC
Confidence 444455555555433
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.14 E-value=0.092 Score=47.33 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=69.0
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhh---hhcceeEeeec-CCCCCCCCCccEEEecccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV---HKGIVRVADIK-FPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLV---rKGiVRvADIk-fpLPYR~kSFslVIVSDaLDy 168 (227)
.+||-+|..+..+...|.+. ..+..|||+-+- -.+ .++.+- .+--+..+|+. ..+|+-..+|++|+.+.++.|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~-~l~-~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK-AGQVIALDFIES-VIK-KNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHH-HHH-HHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 48999999999888777765 457888886431 111 122211 11224456763 345666789999999999999
Q ss_pred cChhhhccccccchhh-ccCceEEEe
Q 027139 169 LSPKYLNKTLPDLARV-ASDGVLIFA 193 (227)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~ 193 (227)
+++.-+.+.|-++.|+ ..+|.++|.
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9998888999999996 457777775
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.73 E-value=0.21 Score=41.54 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=65.9
Q ss_pred ccccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc-----eeEeeecCCCCCCCCCccEEE
Q 027139 89 GDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI-----VRVADIKFPLPYRAKSFPLVI 161 (227)
Q Consensus 89 GdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGi-----VRvADIkfpLPYR~kSFslVI 161 (227)
+..-.+||-+|-.+......|.+. ..+..|||+.+ ++-+..+|+. .|+ +..+|+.--.+.-..+|++|+
T Consensus 42 ~~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~---~g~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 42 PPRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEA---KGVSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHh---cCCccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 344469999999999877777665 57888998753 3334444443 332 344566432234467999999
Q ss_pred ecccccccChhhhccccccchhhcc-CceEEEe
Q 027139 162 VSDALDYLSPKYLNKTLPDLARVAS-DGVLIFA 193 (227)
Q Consensus 162 VSDaLDyLspryLNkTLPeLaRvsa-dglViF~ 193 (227)
..+.|.|++..- +.|.++.|+-. +|.++++
T Consensus 118 ~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 118 FHAVLEWVADPK--SVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred ehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEE
Confidence 999999996432 56778887644 5666554
No 18
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=91.41 E-value=0.77 Score=39.13 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=79.2
Q ss_pred ecccCCccchHHHHhhhhHHHHHhcc------------------------ccceeeeecCCcchhhhhcccc--cccccc
Q 027139 65 SRIEGDFSCTSEIQRAIPILKKAYGD------------------------SMHKVLHVGPDTCSVVSTLLKE--EETEAW 118 (227)
Q Consensus 65 s~~eg~~sCt~eV~~aiP~LkkaYGd------------------------sM~kVLHVGPdtC~VVs~LLkE--eetEAW 118 (227)
||-.+-.+|+.+|++...-.-+.|-. .-.+||-+|=.|-.....|.+. ...+.+
T Consensus 23 ~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~ 102 (261)
T PLN02233 23 SRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVM 102 (261)
T ss_pred hhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEE
Confidence 44445567888888776665555532 1136888888887754444432 235788
Q ss_pred cccccc--ccchhHHHHhhhhh---c-ceeEeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccC-ceEE
Q 027139 119 GVEPYD--IEDADARCKSLVHK---G-IVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASD-GVLI 191 (227)
Q Consensus 119 GVEPyd--iedad~~CKsLVrK---G-iVRvADIkfpLPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRvsad-glVi 191 (227)
|||+-+ ++-|..+....-.. . -+..+|+ ..+|+...||++|+.+.++.++. ...+.|-|+.|+-.. |.++
T Consensus 103 gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 103 GLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred EEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEE
Confidence 998754 22232221100011 1 1345665 35788888999999999998875 357789999998765 5555
Q ss_pred Eec
Q 027139 192 FAG 194 (227)
Q Consensus 192 F~G 194 (227)
++-
T Consensus 180 i~d 182 (261)
T PLN02233 180 ILD 182 (261)
T ss_pred EEE
Confidence 543
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=90.77 E-value=0.5 Score=37.95 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=63.7
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhhhhc-ceeEeeecCCCCCCCCCccEEEeccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALD 167 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFslVIVSDaLD 167 (227)
.+||.+|-.|......|.+. ...+..|+|+.+ ++-+..+++..-... -+..+|+. .+|+...+|++|+.+..+.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM-ELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh-cCCCCCCCccEEEEecccc
Confidence 58999999999987777654 346789988743 333444544321111 12345552 3566678999999998888
Q ss_pred ccChhhhccccccchhhcc-CceEEEe
Q 027139 168 YLSPKYLNKTLPDLARVAS-DGVLIFA 193 (227)
Q Consensus 168 yLspryLNkTLPeLaRvsa-dglViF~ 193 (227)
+++. ..+.|-++.|+-. +|.+++.
T Consensus 126 ~~~~--~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 126 NVPD--YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred cCCC--HHHHHHHHHHHcCcCeEEEEE
Confidence 7753 2467778777654 5566553
No 20
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=90.56 E-value=0.67 Score=38.76 Aligned_cols=121 Identities=15% Similarity=0.225 Sum_probs=76.7
Q ss_pred ccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccc---ccccccccccccc--ccchhHHHHhhhhhcce--eE
Q 027139 71 FSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLK---EEETEAWGVEPYD--IEDADARCKSLVHKGIV--RV 143 (227)
Q Consensus 71 ~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLk---EeetEAWGVEPyd--iedad~~CKsLVrKGiV--Rv 143 (227)
.-|-.++++.+-.+-+.+-..-.+||.||-.|-.....|++ ....+.+|||+-+ ++-+..+....-...-| ..
T Consensus 36 ~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~ 115 (247)
T PRK15451 36 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE 115 (247)
T ss_pred CCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 34555666665555554444446899999998777665654 3567889988743 22333333221111112 34
Q ss_pred eeecCCCCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEEec
Q 027139 144 ADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAG 194 (227)
Q Consensus 144 ADIkfpLPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRvs-adglViF~G 194 (227)
+|+. .+|. .+|++|+.+-++.+++|....+.+.++.|+- .+|.++++.
T Consensus 116 ~d~~-~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 116 GDIR-DIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CChh-hCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4542 2343 3589999999999999988888999999874 567777765
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.25 E-value=0.23 Score=34.95 Aligned_cols=100 Identities=24% Similarity=0.263 Sum_probs=62.4
Q ss_pred ceeeeecCCcchhhhhccc-ccccccccccccc--ccchhHHHHh--hhhhcceeEeeecCCCCCCCCCccEEEecc-cc
Q 027139 93 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYD--IEDADARCKS--LVHKGIVRVADIKFPLPYRAKSFPLVIVSD-AL 166 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLk-EeetEAWGVEPyd--iedad~~CKs--LVrKGiVRvADIkfpLPYR~kSFslVIVSD-aL 166 (227)
.+||.+|-.|=...-.|++ ....+..|||+.+ ++-+..+.+. +-.+=-+..+|+ ...+--...|++|+.+. .+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCcc
Confidence 4799999999888888888 4788899998743 3445555522 122223566888 34444455599999999 66
Q ss_pred cccCh-hhhccccccch-hhccCceEEEe
Q 027139 167 DYLSP-KYLNKTLPDLA-RVASDGVLIFA 193 (227)
Q Consensus 167 DyLsp-ryLNkTLPeLa-RvsadglViF~ 193 (227)
+.+-+ ...-+.|-.+. ++..+|.++++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 64443 23333333443 34456666654
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=90.20 E-value=0.74 Score=37.36 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=70.5
Q ss_pred chHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc----eeEeeec
Q 027139 73 CTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI----VRVADIK 147 (227)
Q Consensus 73 Ct~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrK-Gi----VRvADIk 147 (227)
=+.++.+.++.++ -.+||-+|=.+......|.+. ..+.+||++.+ ++-..++.+.++ |+ +.++|+.
T Consensus 18 ~~~~l~~~l~~~~------~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~--~~i~~a~~~~~~~~~~~v~~~~~d~~ 88 (197)
T PRK11207 18 THSEVLEAVKVVK------PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNP--MSIANLERIKAAENLDNLHTAVVDLN 88 (197)
T ss_pred ChHHHHHhcccCC------CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCH--HHHHHHHHHHHHcCCCcceEEecChh
Confidence 3456666666442 368999999887766555544 55777876642 344455555443 22 3456774
Q ss_pred CCCCCCCCCccEEEecccccccChhhhccccccchhh-ccCceEEE
Q 027139 148 FPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGVLIF 192 (227)
Q Consensus 148 fpLPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRv-sadglViF 192 (227)
.+++ +++|++|+.+.++-|++|..+-+.+-+++|+ ..+|.+++
T Consensus 89 -~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 89 -NLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -hCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2334 4679999999999999887777777777776 45676443
No 23
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=90.11 E-value=1.1 Score=36.06 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=55.2
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhh-hhcc--e--eEeeecCCCCCCCCCccEEEecccc
Q 027139 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLV-HKGI--V--RVADIKFPLPYRAKSFPLVIVSDAL 166 (227)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLV-rKGi--V--RvADIkfpLPYR~kSFslVIVSDaL 166 (227)
-.+||.+|..|-.... +|.+...+..|||.. ++.-..++.-. +-|+ | ...|..-.+| ..++|++|++.-+.
T Consensus 79 ~~~VLeiG~GsG~~t~-~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~ 154 (212)
T PRK00312 79 GDRVLEIGTGSGYQAA-VLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILVTAAA 154 (212)
T ss_pred CCEEEEECCCccHHHH-HHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEEccCc
Confidence 3589999999877544 333333468888866 33323333222 2243 2 3344322232 13789999998777
Q ss_pred cccChhhhccccccchhhccCceEEEecC-CCccch
Q 027139 167 DYLSPKYLNKTLPDLARVASDGVLIFAGY-PGQQRA 201 (227)
Q Consensus 167 DyLspryLNkTLPeLaRvsadglViF~G~-Pgqqra 201 (227)
.++..+. +..+...|.+++.=. .++|+.
T Consensus 155 ~~~~~~l-------~~~L~~gG~lv~~~~~~~~~~~ 183 (212)
T PRK00312 155 PEIPRAL-------LEQLKEGGILVAPVGGEEQQLL 183 (212)
T ss_pred hhhhHHH-------HHhcCCCcEEEEEEcCCCceEE
Confidence 6663322 234667887766543 445443
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=89.72 E-value=0.59 Score=37.36 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=62.0
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhc--ceeEeee-cCCCCCCCCCccEEEecccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADI-KFPLPYRAKSFPLVIVSDAL 166 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CKsLVrKG--iVRvADI-kfpLPYR~kSFslVIVSDaL 166 (227)
++||.+|..+......+.++- ..+..|++.-+ ++.+..+|+..--.+ -+...|+ +. |+ +.+|++|+....+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~-~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PF-PDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CC-CCCCCEeehHHHH
Confidence 479999999988777776653 45677776521 223333333211111 3445666 33 33 4689999999999
Q ss_pred cccChhhhccccccchh-hccCceEEEecC
Q 027139 167 DYLSPKYLNKTLPDLAR-VASDGVLIFAGY 195 (227)
Q Consensus 167 DyLspryLNkTLPeLaR-vsadglViF~G~ 195 (227)
.++.. ....+-++.| +..+|.++++..
T Consensus 78 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIKD--KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCCC--HHHHHHHHHHHcCCCCEEEEEEc
Confidence 88753 3566677766 577888888764
No 25
>PLN02244 tocopherol O-methyltransferase
Probab=89.20 E-value=0.95 Score=40.09 Aligned_cols=99 Identities=23% Similarity=0.354 Sum_probs=67.7
Q ss_pred ccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc-----eeEeeecCCCCCCCCCccEEEecc
Q 027139 91 SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI-----VRVADIKFPLPYRAKSFPLVIVSD 164 (227)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrK-Gi-----VRvADIkfpLPYR~kSFslVIVSD 164 (227)
.-.+||-||-.+-.....|.+.-..+.-||++-+- .-..++.+.++ |+ +.++|+ ..+|+...+|++|+..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~--~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPV--QAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECC
Confidence 44689999999888776666654567778775431 22234444332 32 455776 45788889999999999
Q ss_pred cccccChhhhccccccchhhcc-CceEEEec
Q 027139 165 ALDYLSPKYLNKTLPDLARVAS-DGVLIFAG 194 (227)
Q Consensus 165 aLDyLspryLNkTLPeLaRvsa-dglViF~G 194 (227)
++.++.. ..+.+-|+.|+-. +|.++++.
T Consensus 195 ~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMPD--KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccCC--HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999854 3467778888865 57777654
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=88.92 E-value=0.79 Score=37.12 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=77.8
Q ss_pred hHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc---eeEeeecCC
Q 027139 74 TSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI---VRVADIKFP 149 (227)
Q Consensus 74 t~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrK-Gi---VRvADIkfp 149 (227)
..++.++++.++ -.+||-+|-.+.....-|.+. ..+.+|+++-+ ++-..++...++ |+ ..++|+.-
T Consensus 19 ~~~l~~~~~~~~------~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~- 88 (195)
T TIGR00477 19 HSAVREAVKTVA------PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDINA- 88 (195)
T ss_pred hHHHHHHhccCC------CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccchh-
Confidence 346667776653 258999999999877666653 45666665532 333444433332 32 34556642
Q ss_pred CCCCCCCccEEEecccccccChhhhccccccchhh-ccCce-EEEec---------CCCccchhhhhhcccCC
Q 027139 150 LPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV-ASDGV-LIFAG---------YPGQQRAKVAELSKFGR 211 (227)
Q Consensus 150 LPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRv-sadgl-ViF~G---------~PgqqrakvaelsKfGr 211 (227)
+|+ +++|++|+.+..+-++++..+-+.+-++.|+ ..+|. +|+.. .|.+.+..-.|+.+.=+
T Consensus 89 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~ 160 (195)
T TIGR00477 89 AAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA 160 (195)
T ss_pred ccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC
Confidence 233 3689999999999999887777778888775 55675 44432 13344555555544433
No 27
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=88.48 E-value=1.3 Score=36.36 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=64.7
Q ss_pred cccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEecccccc
Q 027139 90 DSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDy 168 (227)
+.-.+||.+|-.+..+...|.+.- ..+..|||+.+ +.-..++....+--+..+|+.-..| ..+|++|+.+.+++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRLPDCQFVEADIASWQP--PQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhCCCCeEEECchhccCC--CCCccEEEEccChhh
Confidence 344689999999988876665442 56889998864 2222333323233356678753222 458999999999999
Q ss_pred cChhhhccccccchhhc-cCceEEEec
Q 027139 169 LSPKYLNKTLPDLARVA-SDGVLIFAG 194 (227)
Q Consensus 169 LspryLNkTLPeLaRvs-adglViF~G 194 (227)
+.. ..+.|.++.|+- .+|.+++..
T Consensus 106 ~~d--~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 106 LPD--HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 853 235677777764 477777753
No 28
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=87.93 E-value=0.86 Score=41.03 Aligned_cols=97 Identities=20% Similarity=0.142 Sum_probs=64.8
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccc--hhHHHHhhhhhcceeE--eeecCCCCCCCCCccEEEecccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED--ADARCKSLVHKGIVRV--ADIKFPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydied--ad~~CKsLVrKGiVRv--ADIkfpLPYR~kSFslVIVSDaLDy 168 (227)
++||-||-.|-.....++++......||+|.+.-- +....+.+-..+.+.+ .|+. -+|.. .+|++|+...+|.|
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~~-~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHEL-YAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCCC-CCcCEEEEcchhhc
Confidence 58999999999888888888766899999987421 2222222112222322 3332 13332 48999999999998
Q ss_pred cChhhhccccccchhh-ccCceEEEe
Q 027139 169 LSPKYLNKTLPDLARV-ASDGVLIFA 193 (227)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~ 193 (227)
+ +.....|-++.|+ ..+|.+|+.
T Consensus 201 ~--~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 R--KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred c--CCHHHHHHHHHHhcCCCCEEEEE
Confidence 7 3456788899985 456777765
No 29
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=87.56 E-value=1.3 Score=31.14 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=55.7
Q ss_pred cceeeeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhh-hhcceeEeeecCCCCCCCCCccEEEeccccc
Q 027139 92 MHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALD 167 (227)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPyd--iedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFslVIVSDaLD 167 (227)
-.+||-+|..+=.....++++ .+.+.+|+|+-+ ++-+..+++.+- .+=-+...|+...+++=.++|..|+.....+
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 358999999886665566655 247889999743 233444444431 1111223444332444346899998765332
Q ss_pred ccChhhhccccccchhh-ccCceEEEecC
Q 027139 168 YLSPKYLNKTLPDLARV-ASDGVLIFAGY 195 (227)
Q Consensus 168 yLspryLNkTLPeLaRv-sadglViF~G~ 195 (227)
-+.+.+.++.|+ ..+|.++++.+
T Consensus 100 -----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 100 -----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred -----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 223445555554 35677777653
No 30
>PRK08317 hypothetical protein; Provisional
Probab=86.31 E-value=1.1 Score=34.66 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=61.2
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEecccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPyd--iedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDy 168 (227)
.+||.+|..+-.....+.+. ...+..|+++-+ ++.+..+....-.+--+..+|+. .+|+...+|++|+...++.+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~~~ 99 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVLQH 99 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechhhc
Confidence 47999999986655555443 245778888743 23333332222222334556663 35667789999999999998
Q ss_pred cChhhhccccccchhh-ccCceEEEec
Q 027139 169 LSPKYLNKTLPDLARV-ASDGVLIFAG 194 (227)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G 194 (227)
+.- ....+.++.++ ..+|.+++..
T Consensus 100 ~~~--~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 100 LED--PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cCC--HHHHHHHHHHHhcCCcEEEEEe
Confidence 852 34556666664 4567666654
No 31
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.18 E-value=2.6 Score=34.44 Aligned_cols=93 Identities=22% Similarity=0.220 Sum_probs=57.2
Q ss_pred ceeeeecCCcchhh---hhcccccccccccccccc--ccchhHHHHhhhhhc--ceeEeeecCCCCCCCCCccEEEeccc
Q 027139 93 HKVLHVGPDTCSVV---STLLKEEETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIVSDA 165 (227)
Q Consensus 93 ~kVLHVGPdtC~VV---s~LLkEeetEAWGVEPyd--iedad~~CKsLVrKG--iVRvADIkfpLPYR~kSFslVIVSDa 165 (227)
.+||.+|-.|.... +++++. ..+.+|+|..+ ++.+..|.+.+--.+ .+..+|..-.+|- .++|+.|++..+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~ 151 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAA 151 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccC
Confidence 47999999998755 444432 34788888763 333444443321111 2345677655543 468999999988
Q ss_pred ccccChhhhccccccchhhccCceEEEec
Q 027139 166 LDYLSPKYLNKTLPDLARVASDGVLIFAG 194 (227)
Q Consensus 166 LDyLspryLNkTLPeLaRvsadglViF~G 194 (227)
+..+.+..+ ..+..+|.+++.-
T Consensus 152 ~~~~~~~l~-------~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 ASTIPSALV-------RQLKDGGVLVIPV 173 (205)
T ss_pred cchhhHHHH-------HhcCcCcEEEEEE
Confidence 877654322 3466788877743
No 32
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=85.37 E-value=1.3 Score=39.39 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=66.8
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhH--HHHhhhhh--cceeEeeecCCCCCCCCCccEEEecccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADA--RCKSLVHK--GIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~--~CKsLVrK--GiVRvADIkfpLPYR~kSFslVIVSDaLDy 168 (227)
++||-||-.+-.....+++.......||+|....-... ..+..-.. --+..+|+. .+|+ ..+|++|+...+|.|
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCC-cCCcCEEEECChhhc
Confidence 68999999999888888887666799999887543222 22211111 123334543 4577 889999999999988
Q ss_pred cChhhhccccccchhh-ccCceEEEec
Q 027139 169 LSPKYLNKTLPDLARV-ASDGVLIFAG 194 (227)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G 194 (227)
.. -..+.|-++.|+ ..+|.+||..
T Consensus 202 ~~--dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 202 RR--SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEE
Confidence 64 234567788776 5678888764
No 33
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=85.17 E-value=1.3 Score=34.42 Aligned_cols=98 Identities=23% Similarity=0.300 Sum_probs=59.2
Q ss_pred ceeeeecCCcchhhhhcccccc--ccccccccccccchhHHHHhhhh---hcceeEeeecCCCCCCCCCccEEEeccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEE--TEAWGVEPYDIEDADARCKSLVH---KGIVRVADIKFPLPYRAKSFPLVIVSDALD 167 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEee--tEAWGVEPydiedad~~CKsLVr---KGiVRvADIkfpLPYR~kSFslVIVSDaLD 167 (227)
..||.+|..+-.....+++... .+..|+|+-+ +.-..|+.-.. +--+...|+. .+|+...+|++|+.+..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeC
Confidence 4799999888776666665544 3677776521 22223333221 1234456664 4667788999999988876
Q ss_pred ccChhhhccccccchh-hccCceEEEecC
Q 027139 168 YLSPKYLNKTLPDLAR-VASDGVLIFAGY 195 (227)
Q Consensus 168 yLspryLNkTLPeLaR-vsadglViF~G~ 195 (227)
++.. +-..+-++.+ +..+|.+++.++
T Consensus 118 ~~~~--~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 118 NVTD--IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred Cccc--HHHHHHHHHHHcCCCcEEEEEEe
Confidence 5532 2234444444 356888888764
No 34
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=85.04 E-value=1.6 Score=39.27 Aligned_cols=100 Identities=19% Similarity=0.138 Sum_probs=65.4
Q ss_pred cceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhh------hcceeEeeecCCCCCCCCCccEEEec
Q 027139 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVH------KGIVRVADIKFPLPYRAKSFPLVIVS 163 (227)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVr------KGiVRvADIkfpLPYR~kSFslVIVS 163 (227)
-.+||.+|=.|-.+--.|.+. ..+..|++.-+ ++.+..+.+.... .--..+.|+... ..+|++|+..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~ 219 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCL 219 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEEc
Confidence 458999999998877667665 45677776554 4445555544321 112344665432 5789999999
Q ss_pred ccccccChhhhccccccchhhccCceEEEecCCC
Q 027139 164 DALDYLSPKYLNKTLPDLARVASDGVLIFAGYPG 197 (227)
Q Consensus 164 DaLDyLspryLNkTLPeLaRvsadglViF~G~Pg 197 (227)
|.|-|+...-+.+-+-.++++.. |.+|++-.|.
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~l~~-g~liIs~~p~ 252 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLASLAE-KRLIISFAPK 252 (315)
T ss_pred CEEEecCHHHHHHHHHHHHhhcC-CEEEEEeCCc
Confidence 99988877666666777777765 4445554454
No 35
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=84.37 E-value=0.42 Score=33.97 Aligned_cols=90 Identities=28% Similarity=0.358 Sum_probs=57.6
Q ss_pred eeeecCCcchhhhhcccc---c-cccccccccccccchhHHHHhhhh-hc---ceeEeeecCCCCCCCCCccEEEeccc-
Q 027139 95 VLHVGPDTCSVVSTLLKE---E-ETEAWGVEPYDIEDADARCKSLVH-KG---IVRVADIKFPLPYRAKSFPLVIVSDA- 165 (227)
Q Consensus 95 VLHVGPdtC~VVs~LLkE---e-etEAWGVEPydiedad~~CKsLVr-KG---iVRvADIkfpLPYR~kSFslVIVSDa- 165 (227)
||-+|..+-.....|++- . +.+.|||+.-. ++=..|+...+ .| -...+|+.. ||+...+|++|+.+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEcCCc
Confidence 455666665555555543 2 36777775421 23344555553 23 457788866 8888889999999766
Q ss_pred ccccChhhhccccccchhhccC
Q 027139 166 LDYLSPKYLNKTLPDLARVASD 187 (227)
Q Consensus 166 LDyLspryLNkTLPeLaRvsad 187 (227)
++|++|.-+.+-+=+++++...
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999888888887777553
No 36
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=83.95 E-value=1.6 Score=34.23 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=58.2
Q ss_pred ceeeeecCCcchhhhhccccc--cccccccccc--cccchhHHHHh--hhhhcceeEeeecCCCCCCCCCccEEEecccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPY--DIEDADARCKS--LVHKGIVRVADIKFPLPYRAKSFPLVIVSDAL 166 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe--etEAWGVEPy--diedad~~CKs--LVrKGiVRvADIkfpLPYR~kSFslVIVSDaL 166 (227)
.+||.+|..+=.....+++.. ..+..|+|+- -++.+..+++. +-..-.+...|+. .+|+...+|++|+.+..+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEeccc
Confidence 579999988744444444433 4677888762 23445444433 1111234445653 355667789999988877
Q ss_pred cccChhhhccccccchh-hccCceEEEec
Q 027139 167 DYLSPKYLNKTLPDLAR-VASDGVLIFAG 194 (227)
Q Consensus 167 DyLspryLNkTLPeLaR-vsadglViF~G 194 (227)
.++.. +.+.|-++.+ +..+|.+++..
T Consensus 132 ~~~~~--~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 RNVPD--IDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCCC--HHHHHHHHHHhccCCcEEEEEE
Confidence 76542 2334444444 46688888765
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=83.92 E-value=1.4 Score=37.73 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=68.2
Q ss_pred hHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhh-cc---eeEeeecCC
Q 027139 74 TSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHK-GI---VRVADIKFP 149 (227)
Q Consensus 74 t~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrK-Gi---VRvADIkfp 149 (227)
..++..+++.++. .+||.+|=.+......|.+. ..+..||+.-. ++-..++...++ |+ +.+.|+.-+
T Consensus 109 ~~~~~~~~~~~~~------~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~--~ai~~~~~~~~~~~l~v~~~~~D~~~~ 179 (287)
T PRK12335 109 HSEVLEAVQTVKP------GKALDLGCGQGRNSLYLALL-GFDVTAVDINQ--QSLENLQEIAEKENLNIRTGLYDINSA 179 (287)
T ss_pred cHHHHHHhhccCC------CCEEEeCCCCCHHHHHHHHC-CCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEechhcc
Confidence 4566666655321 38999999999877666654 35666665431 223334433332 32 344566432
Q ss_pred CCCCCCCccEEEecccccccChhhhccccccchhhc-cCceEEE
Q 027139 150 LPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIF 192 (227)
Q Consensus 150 LPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRvs-adglViF 192 (227)
-. ..+|++|+.+..|-|+++....+-+-++.|+- .+|.+++
T Consensus 180 ~~--~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 180 SI--QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred cc--cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 22 67999999999999999877777777776654 5676444
No 38
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=83.53 E-value=6.7 Score=33.19 Aligned_cols=102 Identities=23% Similarity=0.328 Sum_probs=63.4
Q ss_pred hHHHHHhccccceeeeecCCcchhhhhccccc----ccccccccccc--ccchhHHHHhhhhhcceeEeeecCCCCCCCC
Q 027139 82 PILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE----ETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAK 155 (227)
Q Consensus 82 P~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe----etEAWGVEPyd--iedad~~CKsLVrKGiVRvADIkfpLPYR~k 155 (227)
-.|.+.....-.+||.+|-.|-.....|.+.- ..+..|+++.. ++-|..+. ..--+.++|+. .+|+...
T Consensus 76 ~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~-~lp~~~~ 150 (272)
T PRK11088 76 NLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSH-RLPFADQ 150 (272)
T ss_pred HHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecc-cCCCcCC
Confidence 34444444455679999999998877765432 12568888743 12222111 11125678875 5788889
Q ss_pred CccEEEecccccccChhhhccccccchhhc-cCceEEEecCCCc
Q 027139 156 SFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAGYPGQ 198 (227)
Q Consensus 156 SFslVIVSDaLDyLspryLNkTLPeLaRvs-adglViF~G~Pgq 198 (227)
||++|+... +|.. +.|+.|+= .+|.+|+.. |++
T Consensus 151 sfD~I~~~~-----~~~~----~~e~~rvLkpgG~li~~~-p~~ 184 (272)
T PRK11088 151 SLDAIIRIY-----APCK----AEELARVVKPGGIVITVT-PGP 184 (272)
T ss_pred ceeEEEEec-----CCCC----HHHHHhhccCCCEEEEEe-CCC
Confidence 999998654 3543 57888874 467777764 554
No 39
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=83.51 E-value=1.8 Score=38.99 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=61.3
Q ss_pred eeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhh-hhhc-ceeEeeecCCCCCCCCCccEEEeccccccc
Q 027139 94 KVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSL-VHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (227)
Q Consensus 94 kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsL-VrKG-iVRvADIkfpLPYR~kSFslVIVSDaLDyL 169 (227)
+||-||-.+-.... .|.+...+.+|||+.+ ++-+..+.+.. .... -+..+|+. .+|....+|++|+..+.|.++
T Consensus 134 ~ILDIGCG~G~~s~-~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 134 KFIDIGCGGGLLSE-PLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred EEEEeeCCCCHHHH-HHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhHHHhc
Confidence 79999998877644 4455567899999874 22232221110 0001 13344432 355567899999999999999
Q ss_pred Chhhhccccccchhhc-cCceEEEe
Q 027139 170 SPKYLNKTLPDLARVA-SDGVLIFA 193 (227)
Q Consensus 170 spryLNkTLPeLaRvs-adglViF~ 193 (227)
... ...|.+++|+- .+|.++|+
T Consensus 212 ~d~--~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 212 ANP--AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred CCH--HHHHHHHHHHcCCCcEEEEE
Confidence 743 57888888875 55666655
No 40
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=83.27 E-value=2.9 Score=33.25 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=59.4
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcc--eeE--eeec-CCCCCCCCCccEEEeccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGI--VRV--ADIK-FPLPYRAKSFPLVIVSDA 165 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGi--VRv--ADIk-fpLPYR~kSFslVIVSDa 165 (227)
.+||++|..+-.....+.+. ..+..|+|+-. ++.+..++. +.++ ++. +|+. ++.+. +.+|.+|+.++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~---~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAK---KDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHH---HcCCCceEEEeCCHHHhhcCC-CCCccEEEehhH
Confidence 48999999998776666554 34577877632 233333332 3343 443 3432 33333 578999999999
Q ss_pred ccccChhhhccccccchhh-ccCceEEEec
Q 027139 166 LDYLSPKYLNKTLPDLARV-ASDGVLIFAG 194 (227)
Q Consensus 166 LDyLspryLNkTLPeLaRv-sadglViF~G 194 (227)
+.+... ....|.++.++ ..+|.++++.
T Consensus 122 l~~~~~--~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 122 LEHVPD--PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHhCCC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 988753 34667777665 5667777665
No 41
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.22 E-value=0.67 Score=43.02 Aligned_cols=39 Identities=33% Similarity=0.639 Sum_probs=34.8
Q ss_pred CCCccEEEecccccccChhhhccccccchhhccCc-eEEE
Q 027139 154 AKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG-VLIF 192 (227)
Q Consensus 154 ~kSFslVIVSDaLDyLspryLNkTLPeLaRvsadg-lViF 192 (227)
+.||+.+|.||+.|||+|..+|...-+|.|+++.| -|++
T Consensus 293 ~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 68999999999999999999999999999998765 4444
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=82.29 E-value=1.4 Score=35.53 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=58.1
Q ss_pred cceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEeccccccc
Q 027139 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (227)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPy--diedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDyL 169 (227)
-.+||.+|..+=.....+.+. ..+.+|+|+- -++.+..+++......-+...|+.--+.-....|.+||.+..+.+.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 457999999875555555543 4568888762 2233333332221111233344432222345789999999999987
Q ss_pred Chhhhccccccchhh-ccCceEEEecCC
Q 027139 170 SPKYLNKTLPDLARV-ASDGVLIFAGYP 196 (227)
Q Consensus 170 spryLNkTLPeLaRv-sadglViF~G~P 196 (227)
.. ....|-.+.|+ ..+|.++|+...
T Consensus 128 ~~--~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 128 PD--PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CC--HHHHHHHHHHHcCCCcEEEEEecC
Confidence 42 23344444443 457888877643
No 43
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=81.28 E-value=5.4 Score=32.04 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=63.3
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhh-hhcceeEeeecCCCCCCCCCccEEEec-----
Q 027139 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVS----- 163 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFslVIVS----- 163 (227)
.+||-+|..+......+.+.- ..+..|+|... ++-+..+++..- ..=-+..+|+.-++ ...+|++||..
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL--PGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC--cCCceeEEEECCCCCc
Confidence 489999999999888887653 45778887543 333333333210 01124455654344 35789998751
Q ss_pred -ccccccChhhh------------------ccccccchhh-ccCceEEEecCCCccchhhhhhcccC
Q 027139 164 -DALDYLSPKYL------------------NKTLPDLARV-ASDGVLIFAGYPGQQRAKVAELSKFG 210 (227)
Q Consensus 164 -DaLDyLspryL------------------NkTLPeLaRv-sadglViF~G~PgqqrakvaelsKfG 210 (227)
.....+.+.-. -+-+.+..|+ ...|.++|.-...|-......+.|.|
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~g 233 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAG 233 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCC
Confidence 11112222111 1234555555 66788887655555443344455555
No 44
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=81.17 E-value=2 Score=32.65 Aligned_cols=102 Identities=24% Similarity=0.360 Sum_probs=68.9
Q ss_pred cccceeeeecCCcchhhhhcccc--ccccccccccccccchhHHHHhhhh-hcc----eeEeeecCCCC--CCCCCccEE
Q 027139 90 DSMHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVH-KGI----VRVADIKFPLP--YRAKSFPLV 160 (227)
Q Consensus 90 dsM~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPydiedad~~CKsLVr-KGi----VRvADIkfpLP--YR~kSFslV 160 (227)
++-.+||.+|-.|-...-.|.++ ...+.+||+.-+ ++=..++...+ .|+ ..++|+.= +| +. ..|++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEE
Confidence 35578999999999998888853 256788887543 23333444332 233 35577766 77 66 999999
Q ss_pred EecccccccChhhhccccccchhhccCceEEEecCCC
Q 027139 161 IVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPG 197 (227)
Q Consensus 161 IVSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pg 197 (227)
|...++.++... .+.+-.+.|+-.++-+++...+.
T Consensus 78 ~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECC
Confidence 999999777633 46677888887766555555544
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=80.00 E-value=4.1 Score=36.92 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=63.4
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhh----hcceeEeeecCCCCCCCCCccEEEecccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVH----KGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVr----KGiVRvADIkfpLPYR~kSFslVIVSDaLDy 168 (227)
.+||-||-.+-...-.|.++-..+..||++.+ ++-..++.-.. +=-+..+|+. -+|+...+|++|+..+++.|
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAIGRKCSVEFEVADCT-KKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhhcCCCceEEEEcCcc-cCCCCCCCEEEEEECCcccc
Confidence 47999999987665556655566889998863 22223322211 1124456753 35666789999999999999
Q ss_pred cChhhhccccccchhhc-cCceEEEec
Q 027139 169 LSPKYLNKTLPDLARVA-SDGVLIFAG 194 (227)
Q Consensus 169 LspryLNkTLPeLaRvs-adglViF~G 194 (227)
+.-+ -+.|.++.|+- .+|.++++-
T Consensus 345 ~~d~--~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 345 IQDK--PALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cCCH--HHHHHHHHHHcCCCeEEEEEE
Confidence 8532 25677888864 566766664
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=79.18 E-value=4.9 Score=34.59 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=41.0
Q ss_pred EeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccCceEEEec
Q 027139 143 VADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAG 194 (227)
Q Consensus 143 vADIkfpLPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRvsadglViF~G 194 (227)
++|+-- +|+...+|++|+..+.|-|+++.-..+.+.+++|+=.+|=.++.|
T Consensus 191 ~~dl~~-~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 191 KHNLLA-ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred eccCCC-CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345433 344567899999999999999999999999999988877666666
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=78.55 E-value=3.1 Score=32.90 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=61.7
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhc-ceeEeeecCCCCCCCCCccEEEecccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFslVIVSDaLDy 168 (227)
.+||-+|..|-.+...+.+.. ..+..|+|+.. ++-+..|++..--.. -+..+|...++ ..+|++|+......+
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~---~~~~D~v~~~~~~~~ 109 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL---PGKADAIFIGGSGGN 109 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc---CcCCCEEEECCCccC
Confidence 479999999987766666543 35778888753 344555544321111 12234554333 368999987654443
Q ss_pred cChhhhccccccchh-hccCceEEEec-CCCccchhhhhhcccC
Q 027139 169 LSPKYLNKTLPDLAR-VASDGVLIFAG-YPGQQRAKVAELSKFG 210 (227)
Q Consensus 169 LspryLNkTLPeLaR-vsadglViF~G-~PgqqrakvaelsKfG 210 (227)
+...+.+..| +..+|.+++.. .+.+......-+.|.|
T Consensus 110 -----~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g 148 (187)
T PRK08287 110 -----LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCG 148 (187)
T ss_pred -----HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCC
Confidence 3333444333 45778887754 3344433344455555
No 48
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=76.85 E-value=9.3 Score=31.55 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=56.0
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhh-hhcceeEeeecCCCCCCCCCccEEEeccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALD 167 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPyd--iedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFslVIVSDaLD 167 (227)
++||.||..|-+....|.+. .+.+.+|||+.+ ++-+..+++.+- .+=-+..+|..-.+| -...|+.|+++-+..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-~~~~fD~I~~~~~~~ 156 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-ENAPYDRIYVTAAGP 156 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-cCCCcCEEEECCCcc
Confidence 58999999998876544432 346889999863 333445554331 111244456543332 236799999987765
Q ss_pred ccChhhhccccccchhhccCceEEEe
Q 027139 168 YLSPKYLNKTLPDLARVASDGVLIFA 193 (227)
Q Consensus 168 yLspryLNkTLPeLaRvsadglViF~ 193 (227)
.+.+.++ ..+..+|.+++.
T Consensus 157 ~~~~~l~-------~~LkpgG~lvi~ 175 (212)
T PRK13942 157 DIPKPLI-------EQLKDGGIMVIP 175 (212)
T ss_pred cchHHHH-------HhhCCCcEEEEE
Confidence 5544332 246778876653
No 49
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=76.20 E-value=3.2 Score=35.47 Aligned_cols=125 Identities=21% Similarity=0.267 Sum_probs=63.6
Q ss_pred CCccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhh--c-----c
Q 027139 69 GDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHK--G-----I 140 (227)
Q Consensus 69 g~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVrK--G-----i 140 (227)
.+..+--|.+-.+|.+... .-++||.+|..+..+...+++.. ..+.-+||.-+ ++-..|+....+ + -
T Consensus 53 ~~e~~y~e~l~~~~l~~~~---~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~--~vi~~a~~~~~~~~~~~~~~~ 127 (270)
T TIGR00417 53 RDEFIYHEMIAHVPLFTHP---NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE--KVIELSKKFLPSLAGSYDDPR 127 (270)
T ss_pred chHHHHHHHhhhhHhhcCC---CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH--HHHHHHHHHhHhhcccccCCc
Confidence 3444455666666666532 23499999999999888888754 23333443310 122333332211 1 0
Q ss_pred --eeEeeecCCCCCCCCCccEEEecccccccChh---hhccccccc-hhhccCceEEEec-CCCcc
Q 027139 141 --VRVADIKFPLPYRAKSFPLVIVSDALDYLSPK---YLNKTLPDL-ARVASDGVLIFAG-YPGQQ 199 (227)
Q Consensus 141 --VRvADIkfpLPYR~kSFslVIVSDaLDyLspr---yLNkTLPeL-aRvsadglViF~G-~Pgqq 199 (227)
+.++|----+....+.|++||+ |.-|...|. |-...+-.+ .++..+|++++.. .|-.+
T Consensus 128 v~i~~~D~~~~l~~~~~~yDvIi~-D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~ 192 (270)
T TIGR00417 128 VDLQIDDGFKFLADTENTFDVIIV-DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQ 192 (270)
T ss_pred eEEEECchHHHHHhCCCCccEEEE-eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccC
Confidence 2223421112223578998765 665443332 111112222 4578899988764 45443
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=75.77 E-value=1.9 Score=35.27 Aligned_cols=135 Identities=15% Similarity=0.102 Sum_probs=82.7
Q ss_pred hhhhHHHHHhccccceeeeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhh-hhcceeEeee-c-CCCCC
Q 027139 79 RAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADI-K-FPLPY 152 (227)
Q Consensus 79 ~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPyd--iedad~~CKsLV-rKGiVRvADI-k-fpLPY 152 (227)
...+-..+.+++.-.+||-+|-.|-.....|.+. ...+.+|||+.+ ++.+..+++..- ..--+..+|+ . ++..+
T Consensus 28 ~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~ 107 (202)
T PRK00121 28 PAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF 107 (202)
T ss_pred CCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc
Confidence 3445567888888899999999999887777654 356899999876 555666665431 1112456777 2 33226
Q ss_pred CCCCccEEEecccccccC-hhhh-----ccccccchhh-ccCceEEEec-CCCccchhhhhhcccCCcc
Q 027139 153 RAKSFPLVIVSDALDYLS-PKYL-----NKTLPDLARV-ASDGVLIFAG-YPGQQRAKVAELSKFGRPV 213 (227)
Q Consensus 153 R~kSFslVIVSDaLDyLs-pryL-----NkTLPeLaRv-sadglViF~G-~PgqqrakvaelsKfGrpa 213 (227)
...+|++|+..-...+.. +.+. ...|-++.|+ ..+|.++|+- .+.+.+.-...+.+-|...
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccc
Confidence 678999998643222221 1222 2235555654 4578888765 4445555555666666443
No 51
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=75.54 E-value=3.6 Score=37.71 Aligned_cols=96 Identities=17% Similarity=0.237 Sum_probs=60.9
Q ss_pred ceeeeecCCcchhhhhcccc-cccccccccccc--ccchhHHHHhhhhhc-ceeEeeecCCCCCCCCCccEEEecccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFslVIVSDaLDy 168 (227)
.+||.+|..|=.+...+.+. ...+..|+++-+ ++.+..+-+ .++ -+...|+. .+|+...+|++||.++++.|
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e-~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAE-DLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHH-hCCCCCCceeEEEEcChhhh
Confidence 47999999885544444443 345777877632 222222211 111 13445654 36777889999999999998
Q ss_pred cChhhhccccccchhh-ccCceEEEec
Q 027139 169 LSPKYLNKTLPDLARV-ASDGVLIFAG 194 (227)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G 194 (227)
+... .++|-++.|+ ..+|.+++++
T Consensus 191 ~~d~--~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 191 WPDP--QRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred CCCH--HHHHHHHHHhcCCCcEEEEEE
Confidence 7643 3678888886 5577887776
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=72.99 E-value=6.6 Score=30.82 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=63.6
Q ss_pred ceeeeecCCcchhhhhcccccccccccccc--ccccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEecccccccC
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEP--YDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEP--ydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDyLs 170 (227)
.+||.+|..+......+.+... +..|+|. --++-+..|++..-..--+..+|+-- .+ ..+|++|+.....-..+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK-GV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc-cc--CCcccEEEECCCCCCCc
Confidence 5799999999988777776654 7888874 33445666665432222223355422 22 35899998764432222
Q ss_pred h-----hh--------------hccccccchhhc-cCceEEEecCCCccchh-hhhhcccCCc
Q 027139 171 P-----KY--------------LNKTLPDLARVA-SDGVLIFAGYPGQQRAK-VAELSKFGRP 212 (227)
Q Consensus 171 p-----ry--------------LNkTLPeLaRvs-adglViF~G~Pgqqrak-vaelsKfGrp 212 (227)
+ .+ +.+-|.+..|+= .+|.+++.-...++... ...+.+.|=.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~ 159 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFR 159 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCe
Confidence 1 11 233355555554 45777666533333333 3444455533
No 53
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=71.45 E-value=8.9 Score=33.19 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=60.9
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEecccccccC
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPy--diedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDyLs 170 (227)
.+||-+|-.|-...-.+.+-......||+.- -++-+..|++.---...+.+..-. .++.-..+|++|+. +.+
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~-~~~~~~~~fDlVva-n~~---- 234 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY-LEQPIEGKADVIVA-NIL---- 234 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc-cccccCCCceEEEE-ecC----
Confidence 6899999999655545555444466776643 234455554422111122221111 22333568999865 433
Q ss_pred hhhhccccccchhh-ccCceEEEecCCCccchhhhh
Q 027139 171 PKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVAE 205 (227)
Q Consensus 171 pryLNkTLPeLaRv-sadglViF~G~Pgqqrakvae 205 (227)
..-+.+.++++.|+ ..+|.+|++|.-.+|...+.+
T Consensus 235 ~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~ 270 (288)
T TIGR00406 235 AEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCD 270 (288)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHH
Confidence 22334567777665 567899999976666665544
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=70.81 E-value=9.7 Score=34.87 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=68.2
Q ss_pred hhHHHHHhc-cccceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhhhcceeEeeecCCCCCCCCCc
Q 027139 81 IPILKKAYG-DSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVHKGIVRVADIKFPLPYRAKSF 157 (227)
Q Consensus 81 iP~LkkaYG-dsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPy--diedad~~CKsLVrKGiVRvADIkfpLPYR~kSF 157 (227)
+..+.+..+ ..=.+||-+|-.+......+.+.-..+.-||+.. -++.+..+|+.+ .--+...|..- + ..+|
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l--~v~~~~~D~~~-l---~~~f 229 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL--PVEIRLQDYRD-L---NGQF 229 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC--eEEEEECchhh-c---CCCC
Confidence 444433333 3446899999988888777766555677777653 233344444321 00123344321 1 4789
Q ss_pred cEEEecccccccChhhhccccccchhhcc-CceEEEe
Q 027139 158 PLVIVSDALDYLSPKYLNKTLPDLARVAS-DGVLIFA 193 (227)
Q Consensus 158 slVIVSDaLDyLspryLNkTLPeLaRvsa-dglViF~ 193 (227)
+.|+...+++++.++++...+.++.|+=. +|.+++.
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999988888888888888754 5666664
No 55
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=63.79 E-value=22 Score=29.93 Aligned_cols=108 Identities=23% Similarity=0.320 Sum_probs=58.8
Q ss_pred ccceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEecccccc
Q 027139 91 SMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDy 168 (227)
.=.+||-+|-.|-...-.+.+....+.+|++.-+ ++-+..|++ +.|+ . ..+. ++.-..+|++|+. +.+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~---~~~~-~-~~~~--~~~~~~~fD~Vva-ni~-- 188 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAE---LNGV-E-LNVY--LPQGDLKADVIVA-NIL-- 188 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH---HcCC-C-ceEE--EccCCCCcCEEEE-cCc--
Confidence 3468999999995443334444444577776532 233333332 3343 1 1122 2222237998864 332
Q ss_pred cChhhhccccccchhh-ccCceEEEecCCCccchhh-hhhcccC
Q 027139 169 LSPKYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKV-AELSKFG 210 (227)
Q Consensus 169 LspryLNkTLPeLaRv-sadglViF~G~Pgqqrakv-aelsKfG 210 (227)
..-+-+.+|++.|+ ..+|.+|++|.-..+...+ ..+.+.|
T Consensus 189 --~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~G 230 (250)
T PRK00517 189 --ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAG 230 (250)
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCC
Confidence 22233556777665 4589999999665555444 3345554
No 56
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=63.17 E-value=6.8 Score=34.52 Aligned_cols=96 Identities=27% Similarity=0.384 Sum_probs=56.2
Q ss_pred ceeeeecCCcchhhhhccccccccccccc--cccccchhHHHHhhhhhcce--eEeeecCCCCCCCCCccEEEecccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVE--PYDIEDADARCKSLVHKGIV--RVADIKFPLPYRAKSFPLVIVSDALDY 168 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVE--Pydiedad~~CKsLVrKGiV--RvADIkfpLPYR~kSFslVIVSDaLDy 168 (227)
.++|-+|= .+++.+..|-.--.+-..++ |=-++-|...|+.+ .-| .++|+.- .+=+..|+||++|..+-|
T Consensus 45 ~~alEvGC-s~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~--~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 45 RRALEVGC-SIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPE--FWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEE---TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----SS-EEEEEEES-GGG
T ss_pred ceeEecCC-CccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCC--CCCCCCeeEEEEehHhHc
Confidence 45788873 33455555544433433332 33455566666654 345 4556544 444789999999999999
Q ss_pred cCh-hhhccccccchh-hccCceEEEec
Q 027139 169 LSP-KYLNKTLPDLAR-VASDGVLIFAG 194 (227)
Q Consensus 169 Lsp-ryLNkTLPeLaR-vsadglViF~G 194 (227)
|++ .-|.+.+-.++. +..||.+||.-
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 997 467777666654 88999999954
No 57
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=58.23 E-value=20 Score=29.82 Aligned_cols=93 Identities=13% Similarity=0.176 Sum_probs=61.5
Q ss_pred cceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhhc-ceeEeeecCCCCCCCCCccEEEeccccccc
Q 027139 92 MHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (227)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFslVIVSDaLDyL 169 (227)
-.+||-+|-.|..+...|.+.- ..+..|+|+-+ +.-..++. ++ -++.+|+. .++ ...+|++|+.+.++.|+
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~--~~~~~a~~---~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP--EMVAAARE---RGVDARTGDVR-DWK-PKPDTDVVVSNAALQWV 102 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHh---cCCcEEEcChh-hCC-CCCCceEEEEehhhhhC
Confidence 3689999999988766655442 45788998853 11122221 22 24567774 333 24689999999999998
Q ss_pred Chhhhccccccchhh-ccCceEEEe
Q 027139 170 SPKYLNKTLPDLARV-ASDGVLIFA 193 (227)
Q Consensus 170 spryLNkTLPeLaRv-sadglViF~ 193 (227)
.. ..+.+.++.|+ ..+|.++|+
T Consensus 103 ~d--~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 PE--HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CC--HHHHHHHHHHhCCCCcEEEEE
Confidence 53 35677777774 567787776
No 58
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=58.09 E-value=23 Score=28.93 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=60.1
Q ss_pred ceeeeecCCcchhhhhccccc--ccccccccccc--ccchhHHHHhhhhhc-ceeEeeecCCCCCCCCCccEEEeccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEE--ETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDALD 167 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe--etEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFslVIVSDaLD 167 (227)
.+||-+|..|=+....|.+.. +...+|||..+ ++.+..+++.+--+. .+..+|..-.++ ...+|++|+++.+..
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-PLAPYDRIYVTAAGP 157 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-ccCCCCEEEEcCCcc
Confidence 589999998877665555432 34589998653 334555554431111 234456543222 235899999876655
Q ss_pred ccChhhhccccccchhhccCceEEEecCCCccchhhhhhcccC
Q 027139 168 YLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFG 210 (227)
Q Consensus 168 yLspryLNkTLPeLaRvsadglViF~G~PgqqrakvaelsKfG 210 (227)
.+... + ...+..+|.+|+.-..+.| ++..+.|-|
T Consensus 158 ~~~~~-~------~~~L~~gG~lv~~~~~~~~--~~~~~~~~~ 191 (215)
T TIGR00080 158 KIPEA-L------IDQLKEGGILVMPVGEYLQ--VLKRAEKRG 191 (215)
T ss_pred cccHH-H------HHhcCcCcEEEEEEcCCce--EEEEEEEeC
Confidence 44322 1 2346778887765433333 333444544
No 59
>PRK03612 spermidine synthase; Provisional
Probab=58.00 E-value=20 Score=34.13 Aligned_cols=105 Identities=24% Similarity=0.201 Sum_probs=59.9
Q ss_pred ccceeeeecCCcchhhhhcccccc-ccccccccccccchhHHHHh-----------hhh-hcceeEeeecCCCCCCCCCc
Q 027139 91 SMHKVLHVGPDTCSVVSTLLKEEE-TEAWGVEPYDIEDADARCKS-----------LVH-KGIVRVADIKFPLPYRAKSF 157 (227)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkEee-tEAWGVEPydiedad~~CKs-----------LVr-KGiVRvADIkfpLPYR~kSF 157 (227)
.-++||.+|..+..+...+++... .+.+.||.-+ ++-..||. +-. +=-+..+|..--+.-.+++|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 457899999999999999998755 6788777411 12222222 100 11245567654455556799
Q ss_pred cEEEecccccccChhhhcc-----cccc-chhhccCceEEEec-CCCcc
Q 027139 158 PLVIVSDALDYLSPKYLNK-----TLPD-LARVASDGVLIFAG-YPGQQ 199 (227)
Q Consensus 158 slVIVSDaLDyLspryLNk-----TLPe-LaRvsadglViF~G-~Pgqq 199 (227)
++||+ |.-|--.|. .++ -+.. ..++..+|++++.. .|--+
T Consensus 375 DvIi~-D~~~~~~~~-~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~ 421 (521)
T PRK03612 375 DVIIV-DLPDPSNPA-LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA 421 (521)
T ss_pred CEEEE-eCCCCCCcc-hhccchHHHHHHHHHhcCCCeEEEEecCCcccc
Confidence 99876 544322221 111 1112 24678899988754 34433
No 60
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=58.00 E-value=6.8 Score=36.74 Aligned_cols=121 Identities=23% Similarity=0.383 Sum_probs=66.7
Q ss_pred HHHHhhhhHHHHHhccccceeeeecCCcch-hhhhcccccc-ccccccccccccchhHHHHhhhhhcceeEeeec----C
Q 027139 75 SEIQRAIPILKKAYGDSMHKVLHVGPDTCS-VVSTLLKEEE-TEAWGVEPYDIEDADARCKSLVHKGIVRVADIK----F 148 (227)
Q Consensus 75 ~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~-VVs~LLkEee-tEAWGVEPydiedad~~CKsLVrKGiVRvADIk----f 148 (227)
..+.+||--|+.+ |..+ +||-|--..+- |.--|.+..+ .+.==+.-|.-+++..-=+-.-++|+=-+|-.. |
T Consensus 121 ~~i~~ai~~L~~~-g~pv-rIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAf 198 (311)
T PF12147_consen 121 ELIRQAIARLREQ-GRPV-RILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAF 198 (311)
T ss_pred HHHHHHHHHHHhc-CCce-EEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCC
Confidence 3456666666443 3333 56666333333 3333333333 111122233333333333334445554332111 1
Q ss_pred -CCCCCCC--CccEEEecccccccChhh-hccccccchh-hccCceEEEecCCC
Q 027139 149 -PLPYRAK--SFPLVIVSDALDYLSPKY-LNKTLPDLAR-VASDGVLIFAGYPG 197 (227)
Q Consensus 149 -pLPYR~k--SFslVIVSDaLDyLspry-LNkTLPeLaR-vsadglViF~G~Pg 197 (227)
.=-|.+- .-.|+|||-..|+.+-.- ++.+|--|++ +..+|.+|+||+|=
T Consensus 199 d~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 199 DRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred CHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 0012211 127999999999999855 7888999999 89999999999884
No 61
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=57.16 E-value=10 Score=29.73 Aligned_cols=94 Identities=23% Similarity=0.243 Sum_probs=55.1
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeEeee-cCCCCCCCCCccEEEeccccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADI-KFPLPYRAKSFPLVIVSDALDYL 169 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGiVRvADI-kfpLPYR~kSFslVIVSDaLDyL 169 (227)
.+||-+|+.+..+...|++. ..+.+|||.-. ++.+..++... .+=-+..+|+ +++++ ..+|..| +||.-=++
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~--~~~~d~v-i~n~Py~~ 89 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFDLP--KLQPYKV-VGNLPYNI 89 (169)
T ss_pred CEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCCcc--ccCCCEE-EECCCccc
Confidence 47999999999998888877 57888888762 22233333220 1111344554 33333 3457654 67766566
Q ss_pred ChhhhccccccchhhccCceEEE
Q 027139 170 SPKYLNKTLPDLARVASDGVLIF 192 (227)
Q Consensus 170 spryLNkTLPeLaRvsadglViF 192 (227)
+..-+.+.+-+.. .-.+|+++|
T Consensus 90 ~~~~i~~~l~~~~-~~~~~~l~~ 111 (169)
T smart00650 90 STPILFKLLEEPP-AFRDAVLMV 111 (169)
T ss_pred HHHHHHHHHhcCC-CcceEEEEE
Confidence 6666666665432 225566665
No 62
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=56.20 E-value=19 Score=31.07 Aligned_cols=66 Identities=26% Similarity=0.558 Sum_probs=40.7
Q ss_pred HHHHhhhhhcceeEeeecCCCCCCCCCc--cEEEecccccccChhhhccccccchhhccCceEEEecCCCccchh
Q 027139 130 ARCKSLVHKGIVRVADIKFPLPYRAKSF--PLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAK 202 (227)
Q Consensus 130 ~~CKsLVrKGiVRvADIkfpLPYR~kSF--slVIVSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrak 202 (227)
..=+.++.+|.+.+.++.| .|=.|| ++|||=+| .-+||..+=.- |.|+..+.=+||+|.|.|+-.+
T Consensus 94 ~~~~~~~~~~~Ie~~~~~~---iRGrt~~~~~iIvDEa-QN~t~~~~k~i---lTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 94 EKLEELIQNGKIEIEPLAF---IRGRTFDNAFIIVDEA-QNLTPEELKMI---LTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TCHHHHHHTTSEEEEEGGG---GTT--B-SEEEEE-SG-GG--HHHHHHH---HTTB-TT-EEEEEE--------
T ss_pred HhHHHHhhcCeEEEEehhh---hcCccccceEEEEecc-cCCCHHHHHHH---HcccCCCcEEEEecCceeecCC
Confidence 3456788999999999888 578888 67777555 56788777554 7899999999999999999766
No 63
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=55.99 E-value=13 Score=31.58 Aligned_cols=99 Identities=25% Similarity=0.297 Sum_probs=63.1
Q ss_pred ceeeeecCCcc---hhhhhcccccccccccccccc--ccchhHHHHhhhhhc-ceeEeeecCCCCCCCCCccEEEecccc
Q 027139 93 HKVLHVGPDTC---SVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLPYRAKSFPLVIVSDAL 166 (227)
Q Consensus 93 ~kVLHVGPdtC---~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLPYR~kSFslVIVSDaL 166 (227)
++||+||..|- .++++|.... ...-+||.++ .+-|..+++.+-... .+..+|....+|=.. .|+.||++=+.
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~-g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a-pfD~I~v~~a~ 151 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPV-GRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA-PFDRIIVTAAV 151 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTT-EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG--SEEEEEESSBB
T ss_pred CEEEEecCCCcHHHHHHHHhcCcc-ceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC-CcCEEEEeecc
Confidence 48999998764 4667776433 3566888766 345667776664444 368889988887655 69999999999
Q ss_pred cccChhhhccccccchhhccCceEEE-ecCCCccc
Q 027139 167 DYLSPKYLNKTLPDLARVASDGVLIF-AGYPGQQR 200 (227)
Q Consensus 167 DyLspryLNkTLPeLaRvsadglViF-~G~Pgqqr 200 (227)
+-+...++. .+..+|.+|+ .+..+.|+
T Consensus 152 ~~ip~~l~~-------qL~~gGrLV~pi~~~~~~~ 179 (209)
T PF01135_consen 152 PEIPEALLE-------QLKPGGRLVAPIGQGGSQR 179 (209)
T ss_dssp SS--HHHHH-------TEEEEEEEEEEESSSSSEE
T ss_pred chHHHHHHH-------hcCCCcEEEEEEccCCceE
Confidence 877666554 3456777666 45444443
No 64
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=54.97 E-value=28 Score=28.66 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=42.3
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHH-hhhhhcceeEeeecCCCCCCCCCccEEEe
Q 027139 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCK-SLVHKGIVRVADIKFPLPYRAKSFPLVIV 162 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CK-sLVrKGiVRvADIkfpLPYR~kSFslVIV 162 (227)
.+||.+|..+-.+...|.++- ..+.+|+|.-+ ++-+..|++ .+..+--+..+|+.-+++ ..+|++||.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~ 181 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVS 181 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEE
Confidence 479999999887766666553 46778877543 344555555 111122345566644444 578999876
No 65
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=53.18 E-value=12 Score=29.65 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=25.8
Q ss_pred CCCCcchhhHHHHHHHhhhhhhccCCCccCcc
Q 027139 29 RSSPLLSVGLVLVGAFLLIGYAFSGSGIFGGD 60 (227)
Q Consensus 29 rsspllsi~lv~vgailli~Y~ysgsg~~~~~ 60 (227)
..+-+++|.+++|-.||||..+.++|++-.++
T Consensus 23 ~pn~lMtILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 23 NPNTLMTILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34568889999999999999999999875543
No 66
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=49.63 E-value=23 Score=30.30 Aligned_cols=97 Identities=26% Similarity=0.301 Sum_probs=55.5
Q ss_pred ceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhhhhcc-eeEeeecCCCCCCCCCccEEEeccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLVHKGI-VRVADIKFPLPYRAKSFPLVIVSDALD 167 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPyd--iedad~~CKsLVrKGi-VRvADIkfpLPYR~kSFslVIVSDaLD 167 (227)
.+||-||-.|=.+...|.+. ...+.=|+++-+ ++-+..+++..-..-+ .-.+|. .-||++..||+.|..|=.|.
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da-~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA-EDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT-TB--S-TT-EEEEEEES-GG
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH-HHhcCCCCceeEEEHHhhHH
Confidence 49999998888766666654 345677766543 3445555554322222 122343 35889999999999999998
Q ss_pred ccChhhhccccccchhhccC-ceEEE
Q 027139 168 YLSPKYLNKTLPDLARVASD-GVLIF 192 (227)
Q Consensus 168 yLspryLNkTLPeLaRvsad-glViF 192 (227)
.+.. ..+.|-|+.||=.. |.+++
T Consensus 128 n~~d--~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 128 NFPD--RERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp G-SS--HHHHHHHHHHHEEEEEEEEE
T ss_pred hhCC--HHHHHHHHHHHcCCCeEEEE
Confidence 8764 57899999999754 44433
No 67
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=47.77 E-value=10 Score=28.98 Aligned_cols=17 Identities=35% Similarity=0.960 Sum_probs=13.4
Q ss_pred hccCc-eEEEecCCCccc
Q 027139 184 VASDG-VLIFAGYPGQQR 200 (227)
Q Consensus 184 vsadg-lViF~G~Pgqqr 200 (227)
+++|| |.+|-|.|++++
T Consensus 15 i~~dG~LslF~G~P~~~~ 32 (75)
T PF08955_consen 15 ISEDGVLSLFEGPPGEEK 32 (75)
T ss_dssp EETTTEEEEBSSS-STT-
T ss_pred EcCCCcEEEEecCCCCCc
Confidence 57899 899999999873
No 68
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=46.80 E-value=15 Score=28.92 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=38.5
Q ss_pred eeEeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccCc-eEE
Q 027139 141 VRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDG-VLI 191 (227)
Q Consensus 141 VRvADIkfpLPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRvsadg-lVi 191 (227)
+.++|+. .||+-..+|++|+.+..+-++. -..+.|-|+.||-..| .++
T Consensus 30 ~~~~d~~-~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 30 WIEGDAI-DLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred EEEechh-hCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 5668875 7899999999999999998875 3568899999987765 443
No 69
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=45.32 E-value=52 Score=19.91 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=14.9
Q ss_pred hhhhhcccCCccceeeeeecccc
Q 027139 202 KVAELSKFGRPVSGILLLCYPLF 224 (227)
Q Consensus 202 kvaelsKfGrpak~~~~~~~~~~ 224 (227)
....+.++++-.+.|+..|.-.+
T Consensus 68 ~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 68 LLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred HHHHHHHHHHcCCEEEEEecccc
Confidence 46667777776667777775443
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=44.23 E-value=7.4 Score=32.27 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=30.3
Q ss_pred eeecCCCCCCCCCccEEE-ecccccccChhhhccccccchhhccCceEEEecCCCccchh
Q 027139 144 ADIKFPLPYRAKSFPLVI-VSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAK 202 (227)
Q Consensus 144 ADIkfpLPYR~kSFslVI-VSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrak 202 (227)
.|+-+.-.|||++|+=++ =+++++-|.-.--+.+.| -++|+|-||-=|.-
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~---------~~ll~G~~G~GKt~ 53 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMP---------HLLFAGPPGTGKTT 53 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCC---------eEEEECCCCCCHHH
Confidence 455666789999999544 344444433211123333 37999999987743
No 71
>PRK00811 spermidine synthase; Provisional
Probab=44.02 E-value=48 Score=28.89 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=65.0
Q ss_pred cchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhh---hc-------c
Q 027139 72 SCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVH---KG-------I 140 (227)
Q Consensus 72 sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVr---KG-------i 140 (227)
..--|.+..+|.+. -..-++||.+|-.+..+...+|+.. ..+.-+||.-. ++-..|+.... .| -
T Consensus 60 ~~Y~e~l~h~~~~~---~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~ 134 (283)
T PRK00811 60 FIYHEMMTHVPLFA---HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVE 134 (283)
T ss_pred hhHHHHhhhHHHhh---CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceE
Confidence 34455666667663 2346799999999999999999762 23444444321 12223333221 12 2
Q ss_pred eeEeeecCCCCCCCCCccEEEecccccccChh-hh--cccccc-chhhccCceEEEe-cCCCcc
Q 027139 141 VRVADIKFPLPYRAKSFPLVIVSDALDYLSPK-YL--NKTLPD-LARVASDGVLIFA-GYPGQQ 199 (227)
Q Consensus 141 VRvADIkfpLPYR~kSFslVIVSDaLDyLspr-yL--NkTLPe-LaRvsadglViF~-G~Pgqq 199 (227)
+.++|..--++-..++|++||+ |+-|-..|- -| ..-+-+ -.++..+|++++- +.|-.+
T Consensus 135 v~~~Da~~~l~~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~ 197 (283)
T PRK00811 135 LVIGDGIKFVAETENSFDVIIV-DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQ 197 (283)
T ss_pred EEECchHHHHhhCCCcccEEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccC
Confidence 4557754334445678998875 654322221 11 001112 2456788887773 445433
No 72
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=42.31 E-value=26 Score=30.65 Aligned_cols=107 Identities=14% Similarity=0.033 Sum_probs=67.8
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhh-hhcceeEeeecCCCCCCCCCccEEEeccccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPy--diedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFslVIVSDaLDyL 169 (227)
.+||.+|-.+-.+--.|.+ ...+.+|||.. -++.+..|++..= .+=-+..+|+.--++--.+.|++||+ |
T Consensus 175 ~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~-d----- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLV-N----- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEE-C-----
Confidence 6899999888776555555 34688999854 3566666664431 11113445653222111346888764 4
Q ss_pred Chhh--hccccccchhhccCceEEEecCCCccchhhhhh
Q 027139 170 SPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL 206 (227)
Q Consensus 170 spry--LNkTLPeLaRvsadglViF~G~Pgqqrakvael 206 (227)
.||. .++.+.-|.+...+.+|..+-+|.-.....+.+
T Consensus 248 PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 248 PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence 5554 344556677778889999999998887777777
No 73
>PLN02823 spermine synthase
Probab=42.25 E-value=44 Score=30.59 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=63.0
Q ss_pred CccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccc-cccccccccccccchhHHHHhhhhhc---------
Q 027139 70 DFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYDIEDADARCKSLVHKG--------- 139 (227)
Q Consensus 70 ~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPydiedad~~CKsLVrKG--------- 139 (227)
|...--|.+--+|.+. -..-++||++|=..+.....+|+.. ..+...| |.|...-.+.|+=
T Consensus 85 de~~YhE~l~h~~l~~---~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~V------EiD~~vv~lar~~~~~~~~~~~ 155 (336)
T PLN02823 85 DEFVYHESLVHPALLH---HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMC------DIDQEVVDFCRKHLTVNREAFC 155 (336)
T ss_pred hHHHHHHHHHhHHHhh---CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEE------ECCHHHHHHHHHhccccccccc
Confidence 4445556555556653 2356899999999999999899853 2233333 3333333333321
Q ss_pred ----ceeEeeecCCCCCCCCCccEEEeccccccc---------ChhhhccccccchhhccCceEEEec
Q 027139 140 ----IVRVADIKFPLPYRAKSFPLVIVSDALDYL---------SPKYLNKTLPDLARVASDGVLIFAG 194 (227)
Q Consensus 140 ----iVRvADIkfpLPYR~kSFslVIVSDaLDyL---------spryLNkTLPeLaRvsadglViF~G 194 (227)
-+.++|---=|.-..++|++|| .|+-|=. +..++.+.+ ..++..+|++++-.
T Consensus 156 dprv~v~~~Da~~~L~~~~~~yDvIi-~D~~dp~~~~~~~~Lyt~eF~~~~~--~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 156 DKRLELIINDARAELEKRDEKFDVII-GDLADPVEGGPCYQLYTKSFYERIV--KPKLNPGGIFVTQA 220 (336)
T ss_pred CCceEEEEChhHHHHhhCCCCccEEE-ecCCCccccCcchhhccHHHHHHHH--HHhcCCCcEEEEec
Confidence 1344443333343457898877 4554421 222332111 25688999988654
No 74
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=42.20 E-value=19 Score=32.63 Aligned_cols=107 Identities=16% Similarity=0.065 Sum_probs=71.9
Q ss_pred ceeeeecCCcchhhhhccccccccccccc--cccccchhHHHHhhh-hhcceeEeeecCCCCCCCCCccEEEeccccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVE--PYDIEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVE--Pydiedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFslVIVSDaLDyL 169 (227)
.+||-+|=.|-.+--.|.... .+.+||| |--++++..|.+.+= .+--+..+|+.-.++-..++|++||+ |
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~-D----- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV-N----- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE-C-----
Confidence 579999888777655555443 6789998 666788887776541 11124556764334333356887655 4
Q ss_pred Chhh--hccccccchhhccCceEEEecCCCccchhhhhh
Q 027139 170 SPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAEL 206 (227)
Q Consensus 170 spry--LNkTLPeLaRvsadglViF~G~Pgqqrakvael 206 (227)
.||- -++.+..|++...+++|..+-+|..+-.-++.|
T Consensus 308 PPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 308 PPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred CCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh
Confidence 5543 235556677888899999999999888777777
No 75
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=42.06 E-value=51 Score=27.51 Aligned_cols=102 Identities=16% Similarity=0.200 Sum_probs=57.0
Q ss_pred cceeeeecCCcchhhhhcccc--cccccccccccc--ccchhHHHHhhh-hhcceeEeeecCCCCCCCCCccEEEecccc
Q 027139 92 MHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYD--IEDADARCKSLV-HKGIVRVADIKFPLPYRAKSFPLVIVSDAL 166 (227)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPyd--iedad~~CKsLV-rKGiVRvADIkfpLPYR~kSFslVIVSDaL 166 (227)
-.+||-+|..+-.....+.+. ...+..||++-+ ++-+..+.+.+- ..-.++.+|+. .+|+-..+|++||..-++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~-~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE-ALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh-hCCCCCCceeEEEEcCcc
Confidence 459999999884322222222 233677877532 344443322211 11123446764 466666799999877666
Q ss_pred cccChhhhccccccchhh-ccCceEEEecCC
Q 027139 167 DYLSPKYLNKTLPDLARV-ASDGVLIFAGYP 196 (227)
Q Consensus 167 DyLspryLNkTLPeLaRv-sadglViF~G~P 196 (227)
.+.. . .-+.+.++.|+ ..+|.+++++..
T Consensus 157 ~~~~-d-~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 157 NLSP-D-KERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred cCCC-C-HHHHHHHHHHHcCCCcEEEEEEee
Confidence 5442 1 23456666665 457788887654
No 76
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=40.88 E-value=24 Score=32.48 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=72.8
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhhhh-hcceeEeeecCC---CCCCCCCccEEEecccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSLVH-KGIVRVADIKFP---LPYRAKSFPLVIVSDAL 166 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPy--diedad~~CKsLVr-KGiVRvADIkfp---LPYR~kSFslVIVSDaL 166 (227)
.+||-+|-.|-.+--.|.+. ..+..|||.. -++.|..|.+..-- .--+..+|+.=. +|+..++|++||+
T Consensus 299 ~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~---- 373 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL---- 373 (443)
T ss_pred CEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE----
Confidence 47999998888765555544 3577788744 46777777664321 112445665422 4566678998864
Q ss_pred cccChhh--hccccccchhhccCceEEEecCCCccchhhhhhcccC
Q 027139 167 DYLSPKY--LNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFG 210 (227)
Q Consensus 167 DyLspry--LNkTLPeLaRvsadglViF~G~PgqqrakvaelsKfG 210 (227)
+|-| +.+.+..|.+...+++|.++=+|.-+..-++.|.+-|
T Consensus 374 ---dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tlaRDl~~L~~~g 416 (443)
T PRK13168 374 ---DPPRAGAAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVEAG 416 (443)
T ss_pred ---CcCCcChHHHHHHHHhcCCCeEEEEEeChHHhhccHHHHhhCC
Confidence 3333 3455566777888999999999998888788876544
No 77
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=39.67 E-value=10 Score=27.44 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=26.6
Q ss_pred hccccccchhhccCceEEEecCCCccchhh
Q 027139 174 LNKTLPDLARVASDGVLIFAGYPGQQRAKV 203 (227)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~Pgqqrakv 203 (227)
||+..+|-.++-.+|..+|.|.+|+...+.
T Consensus 37 L~~~~~~~v~l~v~g~~~~~g~lg~~~~~~ 66 (77)
T TIGR02480 37 LDKLAGEPLDILVNGRLIARGEVVVVEDKF 66 (77)
T ss_pred cCCCCCCcEEEEECCEEEEEEEEEEECCEE
Confidence 688899999999999999999999987653
No 78
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=39.03 E-value=61 Score=25.73 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=66.5
Q ss_pred HHHHhhhhHHHHHhccccceeeeecCCcchhhhhcccc--ccccccccccccccchhHHHHhhhhhccee-EeeecCCC-
Q 027139 75 SEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKE--EETEAWGVEPYDIEDADARCKSLVHKGIVR-VADIKFPL- 150 (227)
Q Consensus 75 ~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkE--eetEAWGVEPydiedad~~CKsLVrKGiVR-vADIkfpL- 150 (227)
.|+-+.++.+++ | .+||-+|-.|-.+...+.+. +..+.||||+-+.. + ..++-- .+|+.-+-
T Consensus 21 ~~~~~~~~~i~~--g---~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~---~~~i~~~~~d~~~~~~ 86 (188)
T TIGR00438 21 LQLNQKFKLIKP--G---DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P---IENVDFIRGDFTDEEV 86 (188)
T ss_pred HHHHHHhcccCC--C---CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c---CCCceEEEeeCCChhH
Confidence 345555555553 2 58999999998876666554 35579999987743 1 123321 24664321
Q ss_pred ------CCCCCCccEEEecccc---------cccCh-hhhccccccchhh-ccCceEEEecCCCccchhhh
Q 027139 151 ------PYRAKSFPLVIVSDAL---------DYLSP-KYLNKTLPDLARV-ASDGVLIFAGYPGQQRAKVA 204 (227)
Q Consensus 151 ------PYR~kSFslVIVSDaL---------DyLsp-ryLNkTLPeLaRv-sadglViF~G~Pgqqrakva 204 (227)
.+...+|++|+. |+. +++.. .-+.++|-++.|+ ...|.+++..+....-.++.
T Consensus 87 ~~~l~~~~~~~~~D~V~~-~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l 156 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMS-DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYL 156 (188)
T ss_pred HHHHHHHhCCCCccEEEc-CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHH
Confidence 134668998875 432 21110 1135677777766 56788888765544433333
No 79
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=36.54 E-value=20 Score=29.03 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=31.9
Q ss_pred CCccEEEecccccccChhhhccccccchhhccCceEEEecCC
Q 027139 155 KSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYP 196 (227)
Q Consensus 155 kSFslVIVSDaLDyLspryLNkTLPeLaRvsadglViF~G~P 196 (227)
..+++|+++|+==.++|.||+..+.+|+. ...|+| |++|
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~vglV--t~~~ 68 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLAD-PGVGLV--TGLP 68 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhC-CCCcEE--Eecc
Confidence 67899999999889999999999999987 445555 5544
No 80
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=35.26 E-value=36 Score=28.68 Aligned_cols=44 Identities=27% Similarity=0.484 Sum_probs=29.3
Q ss_pred cccccCCCCC-ccccccccccCCCCcchhhHHHHHHH-----hhhhhhcc
Q 027139 9 TRRLVDTGSF-PFTGALQSKSRSSPLLSVGLVLVGAF-----LLIGYAFS 52 (227)
Q Consensus 9 srR~~d~G~~-~~~g~~~sKSrsspllsi~lv~vgai-----lli~Y~ys 52 (227)
+|-..|+-.. -++|-++..+.++|+--+|++++|.+ +...|.|-
T Consensus 59 ~R~l~~tNtt~~tGGELr~~pte~p~evvG~l~LGvV~GG~i~vLcylyl 108 (127)
T PF06040_consen 59 SRSLSDTNTTTKTGGELRGPPTESPWEVVGYLILGVVAGGLIAVLCYLYL 108 (127)
T ss_pred cccccccCCccccCceEeCCCCCCCeeeeehhhHHHHhccHHHHHHHHhc
Confidence 3444555544 56688888888899888887777654 45556663
No 81
>TIGR01397 fliM_switch flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself.
Probab=35.03 E-value=13 Score=32.40 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=27.8
Q ss_pred hccccccchhhccCceEEEecCCCccchhhh
Q 027139 174 LNKTLPDLARVASDGVLIFAGYPGQQRAKVA 204 (227)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~Pgqqrakva 204 (227)
||++.++-+.|..+|.-+|.|.||+++.|.|
T Consensus 282 L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~A 312 (320)
T TIGR01397 282 LNTDMPEEVSLRVGGRPKFRAQPGVRGGKLA 312 (320)
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCEEE
Confidence 6889999999999999999999999987643
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=34.85 E-value=42 Score=27.51 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=40.9
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEe
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIV 162 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIV 162 (227)
.+||-+|..+-.+...+.+....+..|||..+ ++-+..|++..=-+--+..+|+.-.+ +..+|++||.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~--~~~~fD~Vi~ 107 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV--EFRPFDVVVS 107 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc--cCCCeeEEEE
Confidence 58999999997765556555445777777654 44344444432111234456665444 4578999885
No 83
>PRK06033 hypothetical protein; Validated
Probab=34.24 E-value=14 Score=27.87 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=26.8
Q ss_pred hccccccchhhccCceEEEecCCCccchhh
Q 027139 174 LNKTLPDLARVASDGVLIFAGYPGQQRAKV 203 (227)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~Pgqqrakv 203 (227)
||++.+|-..+-.+|.-+|.|.||..+.+.
T Consensus 36 L~~~~~~~v~v~V~~~~~f~g~~G~~~~~~ 65 (83)
T PRK06033 36 LDATEADEVWILANNHPIARGEVLIDRNRI 65 (83)
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCEE
Confidence 688888999999999999999999987654
No 84
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=33.60 E-value=15 Score=27.62 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=13.5
Q ss_pred cccccccccccchhHHHHhhh
Q 027139 116 EAWGVEPYDIEDADARCKSLV 136 (227)
Q Consensus 116 EAWGVEPydiedad~~CKsLV 136 (227)
=.|||.|+-+++.+.+...++
T Consensus 57 l~~GV~p~~~~~~~~~~~~~~ 77 (117)
T PF02887_consen 57 LYWGVYPVLIEEFDKDTEELI 77 (117)
T ss_dssp GSTTEEEEECSSHSHSHHHHH
T ss_pred cccceEEEEeccccccHHHHH
Confidence 469999987666654444333
No 85
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=32.32 E-value=39 Score=27.57 Aligned_cols=50 Identities=34% Similarity=0.486 Sum_probs=36.5
Q ss_pred CCCCccEEEecccccccChhhhccccccchhhccCceEEEecCCC--ccchhhhhhccc
Q 027139 153 RAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPG--QQRAKVAELSKF 209 (227)
Q Consensus 153 R~kSFslVIVSDaLDyLspryLNkTLPeLaRvsadglViF~G~Pg--qqrakvaelsKf 209 (227)
|-.|+..+=.+|+ .|.+|...+|-..|.. |++|+|..- +|+.++..+.++
T Consensus 3 R~~~a~V~r~aD~----~p~~L~~~~~adGrfr---I~vFagd~~~~~~~~~l~~~~~~ 54 (167)
T cd02979 3 RFPSAPVVRQADA----LPVHLGHRLPADGRFR---IYVFAGDIAPAQQKSRLTQLCDA 54 (167)
T ss_pred cCCCceEEEecCC----CCHhHhhhccCCCCEE---EEEEcCCCCchhHHHHHHHHHHH
Confidence 5566777777776 4888888888766654 899999655 888887666543
No 86
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=31.65 E-value=29 Score=31.49 Aligned_cols=110 Identities=13% Similarity=0.152 Sum_probs=69.4
Q ss_pred ceeeeecCCcchhhhhcccccccccccccc--ccccchhHHHHhhhhhc-ceeEeeecCC---CCCCCCCccEEEecccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEP--YDIEDADARCKSLVHKG-IVRVADIKFP---LPYRAKSFPLVIVSDAL 166 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEP--ydiedad~~CKsLVrKG-iVRvADIkfp---LPYR~kSFslVIVSDaL 166 (227)
.+||-+|-.+..+--.|.+. -.+.+|||. --++++..|++..--+. -+..+|+.-- ++...++|++||+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~---- 368 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL---- 368 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE----
Confidence 46888877776665554443 357899985 44677777776431111 2445565322 2344568998884
Q ss_pred cccChhhh---ccccccchhhccCceEEEecCCCccchhhhhhcccC
Q 027139 167 DYLSPKYL---NKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFG 210 (227)
Q Consensus 167 DyLspryL---NkTLPeLaRvsadglViF~G~PgqqrakvaelsKfG 210 (227)
+|-+- ...+..+.++..+++|.++-+|.-...-.+.+.+-|
T Consensus 369 ---dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~tlard~~~l~~~g 412 (431)
T TIGR00479 369 ---DPPRKGCAAEVLRTIIELKPERIVYVSCNPATLARDLEFLCKEG 412 (431)
T ss_pred ---CcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHHCC
Confidence 33332 344456677888899999889988766677777665
No 87
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=30.83 E-value=2.2e+02 Score=24.56 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=41.4
Q ss_pred ceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhc--ceeEeeecCCCCCCCCCccEEEe
Q 027139 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKG--IVRVADIKFPLPYRAKSFPLVIV 162 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CKsLVrKG--iVRvADIkfpLPYR~kSFslVIV 162 (227)
.+||-+|..|..+--.|.++- ..+..|+|..+ ++-+..|++.+--.. -+..+|+--++ ..++|++||.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL--AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--cCCCccEEEE
Confidence 589999999988877777664 35777777543 555666665432111 13345654333 3447987654
No 88
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=30.67 E-value=16 Score=25.67 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=24.2
Q ss_pred hccccccchhhccCceEEEecCCCccchhh
Q 027139 174 LNKTLPDLARVASDGVLIFAGYPGQQRAKV 203 (227)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~Pgqqrakv 203 (227)
|++...+-+.+..+|..+|.|.+|++..+.
T Consensus 37 l~~~~~~~v~l~v~g~~~~~g~lg~~~~~~ 66 (77)
T PF01052_consen 37 LDKPADEPVELRVNGQPIFRGELGRVNGRL 66 (77)
T ss_dssp ECCESSTEEEEEETTEEEEEEEEEEETTEE
T ss_pred eCCCCCCCEEEEECCEEEEEEEEEEECCEE
Confidence 445555888999999999999999887653
No 89
>PF14035 YlzJ: YlzJ-like protein
Probab=30.07 E-value=19 Score=26.20 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=12.6
Q ss_pred EEecccccccChhh
Q 027139 160 VIVSDALDYLSPKY 173 (227)
Q Consensus 160 VIVSDaLDyLspry 173 (227)
+|-+|--|||.|+|
T Consensus 46 llStnP~dYLnp~~ 59 (66)
T PF14035_consen 46 LLSTNPQDYLNPDY 59 (66)
T ss_pred EecCChHHHcCccC
Confidence 57799999999998
No 90
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=29.76 E-value=35 Score=26.83 Aligned_cols=51 Identities=24% Similarity=0.267 Sum_probs=34.9
Q ss_pred hccCCCccCccccceecccCCccchHHHHhhhhHHHHHhccccceeeeecC
Q 027139 50 AFSGSGIFGGDKAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGP 100 (227)
Q Consensus 50 ~ysgsg~~~~~~~~vs~~eg~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGP 100 (227)
=|+||++|+.+-..--+-+-.......+..|+..|++.+.-.-.+|--+|=
T Consensus 21 ~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~ 71 (213)
T PF00326_consen 21 NYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGH 71 (213)
T ss_dssp E-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcc
Confidence 488999887643321122224457788999999999999777778777773
No 91
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=28.65 E-value=77 Score=31.63 Aligned_cols=122 Identities=24% Similarity=0.417 Sum_probs=88.9
Q ss_pred HHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeEeee--cCCCCC
Q 027139 75 SEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADI--KFPLPY 152 (227)
Q Consensus 75 ~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADI--kfpLPY 152 (227)
..+.+.||.. .-|.+.+-+|-||=.+=|.-+.|++. +.-+-.+.|+|-.. +.++--.++|+--+--+ ..-|||
T Consensus 103 d~i~~~~~~~--~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~--~qvqfaleRGvpa~~~~~~s~rLPf 177 (506)
T PF03141_consen 103 DQIAEMIPLI--KWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHE--AQVQFALERGVPAMIGVLGSQRLPF 177 (506)
T ss_pred HHHHHHhhcc--ccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCc--hhhhhhhhcCcchhhhhhccccccC
Confidence 3566667765 67889999999998888888888854 44467777875443 44555567887655333 567888
Q ss_pred CCCCccEEEecccccccChhhhccccccchhhc-cCceEEEecCCCccchh
Q 027139 153 RAKSFPLVIVSDALDYLSPKYLNKTLPDLARVA-SDGVLIFAGYPGQQRAK 202 (227)
Q Consensus 153 R~kSFslVIVSDaLDyLspryLNkTLPeLaRvs-adglViF~G~Pgqqrak 202 (227)
=+.+|.+|=.|..+.=-.+.- -.-|-|+-||= .-|..+.+|.|-+||.+
T Consensus 178 p~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r~~ 227 (506)
T PF03141_consen 178 PSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVYQRTD 227 (506)
T ss_pred Cccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCcccccch
Confidence 899999999988775444332 35778888874 67999999999986653
No 92
>TIGR03762 exosort_arch archaeal exosortase. Members of this family are archaeal homologs to bacterial PEP-CTERM-sorting protein exosortase (TIGR02602). Members of this family are found in species with an archaeal variant sorting motif, PEF-CTERM (TIGR03024). Members are found in the thermoacidophilic Aciduliprofundum boonei and the mesophilic psychromethanogens Methanosarcina mazei and Methanococcoides burtonii.
Probab=28.24 E-value=11 Score=34.78 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=37.0
Q ss_pred hhccccccchhhccCceEEEec----CCCccchhhhhhcccCCccceeeeeecc
Q 027139 173 YLNKTLPDLARVASDGVLIFAG----YPGQQRAKVAELSKFGRPVSGILLLCYP 222 (227)
Q Consensus 173 yLNkTLPeLaRvsadglViF~G----~PgqqrakvaelsKfGrpak~~~~~~~~ 222 (227)
|-|+..-++--. |--++|-| +=|-|+.|.+|+.|||-|.+.|++..|-
T Consensus 75 ~~~~~~~~~~~~--d~~~~~~g~s~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 126 (274)
T TIGR03762 75 YNFNPGHTLGTL--DVMTVFFGASLTFYGLQNSQIRNLWEFGAYISFVFAVLYL 126 (274)
T ss_pred eecccCccccce--eEEEEEeeeEEEEEcCCcHHHHHHHhhhhHHHHHHHHHHH
Confidence 778877776655 44566666 4578999999999999999998776553
No 93
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=27.84 E-value=69 Score=29.04 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=76.0
Q ss_pred ceeeee--cCCcchhhhhccccccccccccccccccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEecccccccC
Q 027139 93 HKVLHV--GPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLS 170 (227)
Q Consensus 93 ~kVLHV--GPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDyLs 170 (227)
++||-. |++--++.+.+.--.+.-+=++.||-+...+-|-++=.-.=.+-.+|+-+ -+.-|.+|+++|.. -.
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~~Dl~LagDlf--y~ 154 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPAFDLLLAGDLF--YN 154 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcceeEEEeecee--cC
Confidence 456655 45556666666655555666788888888777776644111122234444 56789999999974 34
Q ss_pred hhhhccccccchhhccCceEEEecCCCccchhhhhhcccC
Q 027139 171 PKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFG 210 (227)
Q Consensus 171 pryLNkTLPeLaRvsadglViF~G~PgqqrakvaelsKfG 210 (227)
+-.=-|.+|-+.|..+.|..++.|-||-..--..+|.+|-
T Consensus 155 ~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~~~a 194 (218)
T COG3897 155 HTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFLA 194 (218)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEeCCCCCCCchhhhhhhh
Confidence 4445567788999999999999999997665555555553
No 94
>PRK08433 flagellar motor switch protein; Validated
Probab=27.79 E-value=20 Score=28.74 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=26.8
Q ss_pred hccccccchhhccCceEEEecCCCccchhhh
Q 027139 174 LNKTLPDLARVASDGVLIFAGYPGQQRAKVA 204 (227)
Q Consensus 174 LNkTLPeLaRvsadglViF~G~Pgqqrakva 204 (227)
||+...|-..+-.+|..+|.|.||+...|.|
T Consensus 61 Ld~~~~e~v~v~V~g~~~f~G~~G~~~~k~A 91 (111)
T PRK08433 61 LEKPAGESVELYINGRIIGKGEVMVYEKNLA 91 (111)
T ss_pred eCCCCCCCEEEEECCEEEEEEEEEEECCEEE
Confidence 6787788899999999999999999886643
No 95
>PF03815 LCCL: LCCL domain; InterPro: IPR004043 The LCCL domain has been named after the best characterised proteins that were found to contain it, namely Limulus factor C, Coch-5b2 and Lgl1. It is an about 100 amino acids domain whose C-terminal part contains a highly conserved histidine in a conserved motif YxxxSxxCxAAVHxGVI. The LCCL module is thought to be an autonomously folding domain that has been used for the construction of various modular proteins through exon-shuffling. It has been found in various metazoan proteins in association with complement B-type domains, C-type lectin domains, von Willebrand type A domains, CUB domains, discoidin lectin domains or CAP domains. It has been proposed that the LCCL domain could be involved in lipopolysaccharide (LPS) binding [, ]. Secondary structure prediction suggests that the LCCL domain contains six beta strands and two alpha helices []. Some proteins known to contain a LCCL domain include Limulus factor C, a LPS endotoxin-sensitive trypsin type serine protease which serves to protect the organism from bacterial infection; vertebrate cochlear protein cochlin or coch-5b2 (Cochlin is probably a secreted protein, mutations affecting the LCCL domain of coch-5b2 cause the deafness disorder DFNA9 in humans); and mammalian late gestation lung protein Lgl1, contains two tandem copies of the LCCL domain [].; PDB: 1JBI_A.
Probab=27.68 E-value=30 Score=26.41 Aligned_cols=41 Identities=22% Similarity=0.542 Sum_probs=26.5
Q ss_pred cceeeeecCCcchhhhhccccccccccccccccccchhHHHHhhhhhcce
Q 027139 92 MHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIV 141 (227)
Q Consensus 92 M~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiV 141 (227)
.++++=.=|..|. +++...||-.+|. +-++-|++-|+-|++
T Consensus 18 ~~~~~v~CP~~C~-------~~~~~v~Gt~~Y~--~~SsIC~AAIHaGvi 58 (96)
T PF03815_consen 18 GTSFTVRCPAGCS-------DSKGTVYGTDVYS--ADSSICKAAIHAGVI 58 (96)
T ss_dssp SSEEEEEE-S----------SSS--EESSSSEE--TTSBHHHHHHHHTSS
T ss_pred CceEEEECCCCCC-------CCCCeEECCcccc--CCCHHHHHHHhCCEE
Confidence 3444445688882 3448999999997 557899999999987
No 96
>COG0312 TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]
Probab=27.51 E-value=20 Score=32.98 Aligned_cols=100 Identities=21% Similarity=0.412 Sum_probs=72.7
Q ss_pred hhHHHHHhccccceeeeecCCcchhhhhccccccc--cccccccccccchhHHHHhhhhhccee--Eeee----cCCCCC
Q 027139 81 IPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEET--EAWGVEPYDIEDADARCKSLVHKGIVR--VADI----KFPLPY 152 (227)
Q Consensus 81 iP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeet--EAWGVEPydiedad~~CKsLVrKGiVR--vADI----kfpLPY 152 (227)
-++|+..+|. -|+++-++|+. +-| ..+|--|||=|=+-+.++.||++|+++ +.|. |+.++-
T Consensus 260 s~~~~~~~G~------~v~se~lti~D-----dp~~~~~~gs~~fDdEGv~t~~~~lIe~GvL~~yl~~~~sA~~~G~~~ 328 (454)
T COG0312 260 SSLLADKLGK------RVASELLTIID-----DPTLPGGLGSYPFDDEGVPTRRTVLIENGVLKGYLHDRYSARKLGLES 328 (454)
T ss_pred chHhhhhhhh------hhcCceeEEEe-----CCCCCCCccCcccCCCCCccceeEEEEcCEEeehhcchhhHHHhCCCc
Confidence 3446666676 68999999875 333 479999999999999999999999986 3444 446666
Q ss_pred ----CCCCccEEEeccc-ccccChhhhccccccchhhccCceEEEe
Q 027139 153 ----RAKSFPLVIVSDA-LDYLSPKYLNKTLPDLARVASDGVLIFA 193 (227)
Q Consensus 153 ----R~kSFslVIVSDa-LDyLspryLNkTLPeLaRvsadglViF~ 193 (227)
|..||+.+...-. =-|+.|- +.++-||-+=--+|+.|-.
T Consensus 329 TGnar~~~~~~~p~~rm~N~~i~~G--~~s~eeli~~~~~Giyv~~ 372 (454)
T COG0312 329 TGNARRGSYAHVPIPRMTNTYIEPG--DYSFEELIEDVKRGLYVTN 372 (454)
T ss_pred CcccccccCCcCCccceecccccCC--CCCHHHHHHhhCcEEEEec
Confidence 5567765554333 2477787 7888888776667877743
No 97
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=26.37 E-value=73 Score=26.89 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=53.1
Q ss_pred ceeeeecCCcchhhhhcccccccccccccc--ccccchhHHHHhh-hhhcceeEeeecCCCCCCCCCccEEEeccccccc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEP--YDIEDADARCKSL-VHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYL 169 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEP--ydiedad~~CKsL-VrKGiVRvADIkfpLPYR~kSFslVIVSDaLDyL 169 (227)
.+||-+|-.|.++--.+|.....++-+||- --++.+..|.+.+ +.+--+...|+.-.++....+|++|+ +
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~-------~ 127 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVF-------V 127 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEE-------E
Confidence 489999888776554445555566777764 2233444444433 11222445676544554445788775 3
Q ss_pred Chhh----hccccccchh---hccCceEEEec
Q 027139 170 SPKY----LNKTLPDLAR---VASDGVLIFAG 194 (227)
Q Consensus 170 spry----LNkTLPeLaR---vsadglViF~G 194 (227)
+|-| .++++.-|+. +..+++|+..=
T Consensus 128 DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 128 DPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 4444 3334444444 47788888764
No 98
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=26.09 E-value=45 Score=26.58 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=30.1
Q ss_pred ceeEeeecCCCCCCCCCccEEEecccccccChhhhccccccchhhccCceEEEecC
Q 027139 140 IVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGY 195 (227)
Q Consensus 140 iVRvADIkfpLPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRvsadglViF~G~ 195 (227)
|+.++|++|.- ....+...++.++.++.+... .+||+||-
T Consensus 3 i~~isD~H~~~---------------~~~~~~~~~~~~~~~i~~~~~-D~~v~tGD 42 (301)
T COG1409 3 IAHISDLHLGA---------------LGVDSEELLEALLAAIEQLKP-DLLVVTGD 42 (301)
T ss_pred EEEEecCcccc---------------cccchHHHHHHHHHHHhcCCC-CEEEEccC
Confidence 66777887765 677788888888888776666 57788883
No 99
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=25.98 E-value=86 Score=24.69 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=47.9
Q ss_pred hhhhccccccccccccccccccchhHHHHhhhhhcceeEeeecCCCCCCCCCccEEEecccccccChhhhccccccchhh
Q 027139 105 VVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARV 184 (227)
Q Consensus 105 VVs~LLkEeetEAWGVEPydiedad~~CKsLVrKGiVRvADIkfpLPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRv 184 (227)
++++.+.++.-.++..+-|..+--...+.+ -||++|=.-...++...++++|+.|.. .+++. +..+
T Consensus 11 ila~a~~~~G~~v~~~~~ygs~~rGG~~~~-----~vris~~~~~~~~~~~~~Dilv~l~~~------~~~~~---~~~l 76 (173)
T PF01558_consen 11 ILARAAAREGYYVQSTPEYGSEIRGGPVVS-----HVRISDEPIIPSPPVGEADILVALDPE------ALERH---LKGL 76 (173)
T ss_dssp HHHHHHHHTTSEEEEEEEEESSSSSSCEEE-----EEEEESS--SSSS-TSSESEEEESSHH------HHHHC---GTTC
T ss_pred HHHHHHHHcCCCEEEEeCCChhhcCCeEEE-----EEEEecCcCccCcccCCCCEEEEcCHH------HHHHH---hcCc
Confidence 455666777777888888887643322222 367888213445555799999987653 33332 3347
Q ss_pred ccCceEEEecCC
Q 027139 185 ASDGVLIFAGYP 196 (227)
Q Consensus 185 sadglViF~G~P 196 (227)
..+|+||+-...
T Consensus 77 ~~~g~vi~ns~~ 88 (173)
T PF01558_consen 77 KPGGVVIINSSL 88 (173)
T ss_dssp ETTEEEEEETTT
T ss_pred CcCeEEEEECCC
Confidence 788999987743
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=25.78 E-value=2.5e+02 Score=21.35 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=40.3
Q ss_pred ceeeeecCCcchhhhhcccccccccccccccc--ccchhHHHHhhhhhc---ceeEeeecCCCCCCCCCccEEEecc
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYD--IEDADARCKSLVHKG---IVRVADIKFPLPYRAKSFPLVIVSD 164 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPyd--iedad~~CKsLVrKG---iVRvADIkfpLPYR~kSFslVIVSD 164 (227)
.+||.+|..+=.....|++. .....|+|.-+ ++-+..+++..--+. .+...|..= +.+.++|++|+...
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~d~vi~n~ 98 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE--PFRGDKFDVILFNP 98 (188)
T ss_pred CEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc--cccccCceEEEECC
Confidence 47999998877776666665 67778877542 233433333211111 133455433 44667999998643
No 101
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=24.86 E-value=1.8e+02 Score=25.42 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=39.7
Q ss_pred ceeeeecCCcchhhhhccccc-cccccccccc--cccchhHHHHhhhh--hcceeEeeecCCCCCCCCCccEEEe
Q 027139 93 HKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPY--DIEDADARCKSLVH--KGIVRVADIKFPLPYRAKSFPLVIV 162 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPy--diedad~~CKsLVr--KGiVRvADIkfpLPYR~kSFslVIV 162 (227)
.+||-+|-.|..+.-.|.+.- ..+..|+|-. -++-+..|.+..-- +=-+..+|+--++| ..+|++||.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~ 195 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEE
Confidence 579999999987766666543 3466666543 23445555543210 11234567633443 458998875
No 102
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=24.60 E-value=37 Score=22.73 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=17.0
Q ss_pred hccCceEEEecCCCccchhhhhh
Q 027139 184 VASDGVLIFAGYPGQQRAKVAEL 206 (227)
Q Consensus 184 vsadglViF~G~Pgqqrakvael 206 (227)
++++|.|.|+-.|-+..++..++
T Consensus 19 ~D~~G~v~ysd~P~~~~~~~~~i 41 (60)
T PF13511_consen 19 VDENGVVHYSDTPPPDGAKAETI 41 (60)
T ss_pred ECCCCCEEECccCCCCCCCeEEe
Confidence 58999999999888654444333
No 103
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=24.59 E-value=35 Score=29.45 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=26.6
Q ss_pred eeee--cCCcchhhhhcccc-cccccc----cccccc-----ccchhHHHHhh
Q 027139 95 VLHV--GPDTCSVVSTLLKE-EETEAW----GVEPYD-----IEDADARCKSL 135 (227)
Q Consensus 95 VLHV--GPdtC~VVs~LLkE-eetEAW----GVEPyd-----iedad~~CKsL 135 (227)
+||+ ||+++.++..|.++ -+...| -|.||+ .++...-|+.+
T Consensus 2 LLH~CCaPCs~~~~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~ 54 (176)
T PF02677_consen 2 LLHICCAPCSTYPLERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKL 54 (176)
T ss_pred eeeecCccccHHHHHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 5898 99999999999877 222222 355654 44555555554
No 104
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=24.23 E-value=30 Score=30.34 Aligned_cols=10 Identities=70% Similarity=1.248 Sum_probs=9.1
Q ss_pred eeecCCCCCC
Q 027139 144 ADIKFPLPYR 153 (227)
Q Consensus 144 ADIkfpLPYR 153 (227)
++||||||.|
T Consensus 141 ~kikFPL~~r 150 (169)
T KOG0829|consen 141 SKIKFPLPHR 150 (169)
T ss_pred cCcccccccc
Confidence 5799999999
No 105
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=24.06 E-value=1.1e+02 Score=22.60 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=28.5
Q ss_pred cEEEecccccccChhhhcc---------ccccchhhccCceEEEecCCCcc
Q 027139 158 PLVIVSDALDYLSPKYLNK---------TLPDLARVASDGVLIFAGYPGQQ 199 (227)
Q Consensus 158 slVIVSDaLDyLspryLNk---------TLPeLaRvsadglViF~G~Pgqq 199 (227)
++.+++|.-.-+..+|=-. .+|...=++.||.|+..+...+.
T Consensus 86 ~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 86 NFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred CceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 3345666544444444333 79999999999999998865544
No 106
>PRK06922 hypothetical protein; Provisional
Probab=23.20 E-value=84 Score=32.31 Aligned_cols=99 Identities=17% Similarity=0.287 Sum_probs=61.2
Q ss_pred ceeeeecCCcchhhhhccc-ccccccccccccc--ccchhHHHHhhhhhc-ceeEeeecCCCC--CCCCCccEEEecccc
Q 027139 93 HKVLHVGPDTCSVVSTLLK-EEETEAWGVEPYD--IEDADARCKSLVHKG-IVRVADIKFPLP--YRAKSFPLVIVSDAL 166 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLk-EeetEAWGVEPyd--iedad~~CKsLVrKG-iVRvADIkfpLP--YR~kSFslVIVSDaL 166 (227)
.+||-||-.|=.+...|.+ -.+.+.+|++.-. ++.+..+++..- .. -+..+|+. .+| +.+.||++|+.+-++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~-dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAI-NLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchH-hCccccCCCCEEEEEEchHH
Confidence 4899999888444333332 2356888887765 455554443210 11 12346753 245 778899999988766
Q ss_pred ccc-----------Chhhhccccccchhhcc-CceEEEe
Q 027139 167 DYL-----------SPKYLNKTLPDLARVAS-DGVLIFA 193 (227)
Q Consensus 167 DyL-----------spryLNkTLPeLaRvsa-dglViF~ 193 (227)
..+ ++..+.+.|-++.|+=. .|.+++.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 543 24677788888888755 5566664
No 107
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=23.14 E-value=15 Score=25.71 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=30.9
Q ss_pred CCCCCCCCCccEEEecccccccChhhhccccccchhhccCceEEEecCCCccchhhhhhcc-cCC-ccc
Q 027139 148 FPLPYRAKSFPLVIVSDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSK-FGR-PVS 214 (227)
Q Consensus 148 fpLPYR~kSFslVIVSDaLDyLspryLNkTLPeLaRvsadglViF~G~PgqqrakvaelsK-fGr-pak 214 (227)
+.+|| -+--.+.+-.+.++.++.+|+++..==-.+.+.+.++|.+..|-. .....++.+ +|. +.+
T Consensus 20 ~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lPl~~~~~~l~va~~dP~~-~~~~~~l~~~~~~~~i~ 86 (109)
T PF05157_consen 20 LGLPF-VDLDELPVDPELLDRLPLEFARRNRVLPLRQDDGTLVVAVADPLD-PEALDELEFLLGKYPIE 86 (109)
T ss_dssp HT--B---GGGS-SS-----G--HHHHHHHTEEEEEECTTCEEEEES-TT--HHHHHHHHHHH-S--EE
T ss_pred hCCCe-echhhcCCCHHHHHhhHHHHHHHcCEEEEEEECCEEEEEEcCCCC-HHHHHHHHHHcCCCCeE
Confidence 44555 223334444567788999998765444456778889999999977 444455543 466 655
No 108
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=23.05 E-value=56 Score=21.77 Aligned_cols=20 Identities=30% Similarity=0.803 Sum_probs=15.2
Q ss_pred eEEEecCCCccchhhhhhcc
Q 027139 189 VLIFAGYPGQQRAKVAELSK 208 (227)
Q Consensus 189 lViF~G~PgqqrakvaelsK 208 (227)
+|-|+|+++.+|.++.++-.
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~ 21 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIE 21 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 57899999999998877643
No 109
>PRK04457 spermidine synthase; Provisional
Probab=22.83 E-value=22 Score=30.69 Aligned_cols=99 Identities=19% Similarity=0.166 Sum_probs=52.2
Q ss_pred ccceeeeecCCcchhhhhcccc-ccccccccccccccchhHHHHhhhh-hc-----ceeEeeecCCCCCCCCCccEEEec
Q 027139 91 SMHKVLHVGPDTCSVVSTLLKE-EETEAWGVEPYDIEDADARCKSLVH-KG-----IVRVADIKFPLPYRAKSFPLVIVS 163 (227)
Q Consensus 91 sM~kVLHVGPdtC~VVs~LLkE-eetEAWGVEPydiedad~~CKsLVr-KG-----iVRvADIkfpLPYR~kSFslVIVS 163 (227)
.-++||++|-.+.++...+++. .+.+.++||.= +++-..|+.-.. .+ -|.++|..--++=-+.+|++|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid--p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~- 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN--PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV- 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE-
Confidence 4578999999999977766553 24556666541 122233333221 11 24557753223222468998875
Q ss_pred cccccc-Chhhhc--cccccc-hhhccCceEEE
Q 027139 164 DALDYL-SPKYLN--KTLPDL-ARVASDGVLIF 192 (227)
Q Consensus 164 DaLDyL-spryLN--kTLPeL-aRvsadglViF 192 (227)
|+.+-- -|..++ ..+.+. .++..+|++++
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 553311 111222 112222 35788999887
No 110
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=22.38 E-value=49 Score=22.52 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.6
Q ss_pred chhHHHHhhhhhcceeEeeec
Q 027139 127 DADARCKSLVHKGIVRVADIK 147 (227)
Q Consensus 127 dad~~CKsLVrKGiVRvADIk 147 (227)
.+...-++|+++|+|+..+-+
T Consensus 38 ~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 38 TVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEcCc
Confidence 356778999999999998865
No 111
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.06 E-value=31 Score=33.09 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=32.0
Q ss_pred CCCCCccEEEecccc-cccChhhhccccccchhhccCceEEEecCCCccchhhhh
Q 027139 152 YRAKSFPLVIVSDAL-DYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAE 205 (227)
Q Consensus 152 YR~kSFslVIVSDaL-DyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakvae 205 (227)
|||++|+=||.-+.+ ..|.--+-++.+| ...+|+|-||--|.-.|.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~~l~--------ha~Lf~Gp~G~GKTt~A~ 56 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQYLH--------HAYLFTGTRGVGKTTISR 56 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhCCCC--------eeEEEECCCCCCHHHHHH
Confidence 999999998876543 4444333343333 367999999998877664
No 112
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=21.95 E-value=1.1e+02 Score=30.41 Aligned_cols=123 Identities=17% Similarity=0.095 Sum_probs=71.2
Q ss_pred ceeeeecCCcchhhhhccccccccccccccc--cccchhHHHHhh-hh--hcceeEeeecCCCCCCCCCccEEEec----
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPY--DIEDADARCKSL-VH--KGIVRVADIKFPLPYRAKSFPLVIVS---- 163 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPy--diedad~~CKsL-Vr--KGiVRvADIkfpLPYR~kSFslVIVS---- 163 (227)
++||.+|=.||..--.+.+.+..+..+||-- -++-+..|.+.. +. +--+..+|+-=.|.-..++|++||+-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f 619 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTF 619 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCC
Confidence 6899999999999888887665567777633 345555555422 11 11233466522222115689998751
Q ss_pred -------ccccccC-hhhhccccccchhhccCceEEEecCCCccchhhhhhcccCCccceee
Q 027139 164 -------DALDYLS-PKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVAELSKFGRPVSGIL 217 (227)
Q Consensus 164 -------DaLDyLs-pryLNkTLPeLaRvsadglViF~G~PgqqrakvaelsKfGrpak~~~ 217 (227)
+..+... -+-||+.. +..+..+|+++|+..+.+.....+.+.+-|+..+.|-
T Consensus 620 ~~~~~~~~~~~~~~~y~~l~~~a--~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 620 SNSKRMEDSFDVQRDHVALIKDA--KRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCccchhhhHHHHHHHHHHHH--HHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 1000000 00122222 2236679999998888877766666777777766554
No 113
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=21.71 E-value=71 Score=25.80 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=64.1
Q ss_pred HHHHhccccceeeeecCCcchhhhhccccc-ccccccccccc--ccchhHHHHhhhhhccee--EeeecCCCC--CCCCC
Q 027139 84 LKKAYGDSMHKVLHVGPDTCSVVSTLLKEE-ETEAWGVEPYD--IEDADARCKSLVHKGIVR--VADIKFPLP--YRAKS 156 (227)
Q Consensus 84 LkkaYGdsM~kVLHVGPdtC~VVs~LLkEe-etEAWGVEPyd--iedad~~CKsLVrKGiVR--vADIkfpLP--YR~kS 156 (227)
.++.+|+...++|-+|=.+=.+...+.++. +....|||+++ ++-+..+++..=. +.|+ ..|+..-++ +-..+
T Consensus 9 ~~~~f~~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~ 87 (194)
T TIGR00091 9 FATVFGNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGS 87 (194)
T ss_pred HHHHhCCCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCc
Confidence 577889888999999988877766666653 67889999975 3344444443211 1233 356532111 33448
Q ss_pred ccEEEecccccccChh-----hhc-cccccchhh-ccCceEEEecCCCc
Q 027139 157 FPLVIVSDALDYLSPK-----YLN-KTLPDLARV-ASDGVLIFAGYPGQ 198 (227)
Q Consensus 157 FslVIVSDaLDyLspr-----yLN-kTLPeLaRv-sadglViF~G~Pgq 198 (227)
|+.|++.=-.-|-..+ -+| ..+-+++|+ ...|.++|+-...+
T Consensus 88 ~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 88 LSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred eeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 8887753111111111 111 124556776 55788877654433
No 114
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=21.61 E-value=80 Score=24.00 Aligned_cols=88 Identities=17% Similarity=0.321 Sum_probs=31.3
Q ss_pred cchhhHHHHHHHhhhhhhccCCCccCccccceecccCCccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhcc--
Q 027139 33 LLSVGLVLVGAFLLIGYAFSGSGIFGGDKAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLL-- 110 (227)
Q Consensus 33 llsi~lv~vgailli~Y~ysgsg~~~~~~~~vs~~eg~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LL-- 110 (227)
++-+.+.++.+++++++...+-+......+.|-++.|..-=..|+.+.+-..++.|+.....=. -...++..|.
T Consensus 11 ~~~~~~~iv~~~~~l~~~~~~~~~~~~~~~~vA~V~g~~It~~e~~~~~~~~~~~~~~~~~~~~----~~~~~l~~lI~~ 86 (154)
T PF13624_consen 11 VFKILIGIVLAIFVLAFGIGGCGSGSSNNNVVAKVNGEKITKSELDRRVQRYSRQYQQQEDEDQ----LKQQVLDQLIDQ 86 (154)
T ss_dssp ------------------------------EEEEETTEEEEHHHHHHHHHHHHHHTT---TTS-----HHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhccCCCCCEEEEECCEEeCHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHH
Confidence 4444445555554444222222221234467788888777788899888888888874331100 1222333333
Q ss_pred --cccccccccccccc
Q 027139 111 --KEEETEAWGVEPYD 124 (227)
Q Consensus 111 --kEeetEAWGVEPyd 124 (227)
-..+.+.-||..-|
T Consensus 87 ~ll~q~A~~~gi~vsd 102 (154)
T PF13624_consen 87 KLLLQEAKKLGISVSD 102 (154)
T ss_dssp HHHHHHHHHTT----H
T ss_pred HHHHHHHHHcCCCCCH
Confidence 23456666776655
No 115
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=21.58 E-value=2.2e+02 Score=24.93 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=60.1
Q ss_pred ceeeeecCCcchhhhhccccccccccccccccccch-hHHH-Hhhhhhc-cee----EeeecC--CCCCCC-CCccEEEe
Q 027139 93 HKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDA-DARC-KSLVHKG-IVR----VADIKF--PLPYRA-KSFPLVIV 162 (227)
Q Consensus 93 ~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydieda-d~~C-KsLVrKG-iVR----vADIkf--pLPYR~-kSFslVIV 162 (227)
.+||-+|..|+.....|++.-.. ..-+-+.|+... =..| +.|.+.. -++ .+|+-- ++|-.. .+..+++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 46999999999999888876431 233445566552 1333 3343321 122 467643 343222 22455666
Q ss_pred cc-cccccChhhhccccccchhhcc-CceEEE
Q 027139 163 SD-ALDYLSPKYLNKTLPDLARVAS-DGVLIF 192 (227)
Q Consensus 163 SD-aLDyLspryLNkTLPeLaRvsa-dglViF 192 (227)
++ .+-+++|......|-+++++=. +|.++|
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 55 5777899898899999887754 455555
No 116
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=20.49 E-value=36 Score=28.58 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=28.1
Q ss_pred CCCCCCCCCccEEEe-cccccccChhhhccccccchhhccCceEEEecCCCccchhhh
Q 027139 148 FPLPYRAKSFPLVIV-SDALDYLSPKYLNKTLPDLARVASDGVLIFAGYPGQQRAKVA 204 (227)
Q Consensus 148 fpLPYR~kSFslVIV-SDaLDyLspryLNkTLPeLaRvsadglViF~G~Pgqqrakva 204 (227)
+---|||++|+=++. .++.+.|..-.-|..+| .++|.|-||-=|.-.+
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~---------~lll~Gp~GtGKT~la 53 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSPNLP---------HLLVQGPPGSGKTAAV 53 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCc---------eEEEECCCCCCHHHHH
Confidence 445699999986664 33333332211121111 5889999998776544
No 117
>PLN02366 spermidine synthase
Probab=20.13 E-value=1.5e+02 Score=26.78 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=66.5
Q ss_pred cCCccchHHHHhhhhHHHHHhccccceeeeecCCcchhhhhccccccccccccccccccc-hhHHHHhhhhh---c----
Q 027139 68 EGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIED-ADARCKSLVHK---G---- 139 (227)
Q Consensus 68 eg~~sCt~eV~~aiP~LkkaYGdsM~kVLHVGPdtC~VVs~LLkEeetEAWGVEPydied-ad~~CKsLVrK---G---- 139 (227)
+.|...-.|.+-.+|.+. =..-++||.||=.+..++..+++-. ....|.--||+. +-.-||....+ |
T Consensus 71 ~~de~~Y~e~l~h~~l~~---~~~pkrVLiIGgG~G~~~rellk~~--~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dp 145 (308)
T PLN02366 71 ERDECAYQEMITHLPLCS---IPNPKKVLVVGGGDGGVLREIARHS--SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDP 145 (308)
T ss_pred CccHHHHHHHHHHHHHhh---CCCCCeEEEEcCCccHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhhhhhccccCCC
Confidence 334444456666666642 2335799999999999999998753 223333444544 44556664321 2
Q ss_pred --ceeEeeecCCCC-CCCCCccEEEecccccccCh-------hhhccccccchhhccCceEEE-ecCCCcc
Q 027139 140 --IVRVADIKFPLP-YRAKSFPLVIVSDALDYLSP-------KYLNKTLPDLARVASDGVLIF-AGYPGQQ 199 (227)
Q Consensus 140 --iVRvADIkfpLP-YR~kSFslVIVSDaLDyLsp-------ryLNkTLPeLaRvsadglViF-~G~Pgqq 199 (227)
-+.++|-.--+. .-.+.|++||+ |+-|--.| .++... ..++..||+++. ++.|-.+
T Consensus 146 Rv~vi~~Da~~~l~~~~~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~---~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 146 RVNLHIGDGVEFLKNAPEGTYDAIIV-DSSDPVGPAQELFEKPFFESV---ARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred ceEEEEChHHHHHhhccCCCCCEEEE-cCCCCCCchhhhhHHHHHHHH---HHhcCCCcEEEECcCCcccc
Confidence 134456311111 11467999886 66553222 222211 236788999865 3444433
No 118
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=20.04 E-value=59 Score=26.16 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.5
Q ss_pred hhhhccccccchhhcc-CceEEEecCCCc
Q 027139 171 PKYLNKTLPDLARVAS-DGVLIFAGYPGQ 198 (227)
Q Consensus 171 pryLNkTLPeLaRvsa-dglViF~G~Pgq 198 (227)
.--+|+|+++|-+... +..+|+.|--.+
T Consensus 71 sTlvN~Ti~~iL~~~~~~~~vil~GpS~~ 99 (147)
T PF04016_consen 71 STLVNGTIDDILELARNAREVILYGPSAP 99 (147)
T ss_dssp HHCCTTTHHHHHHHTTTSSEEEEESCCGG
T ss_pred eeeecCCHHHHHHhCccCCeEEEEecCch
Confidence 3458999999988888 889999995444
Done!