Your job contains 1 sequence.
>027140
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI
EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK
FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSANWK
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027140
(227 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2063648 - symbol:HEN2 "hua enhancer 2" species... 946 4.2e-95 1
RGD|1305984 - symbol:Skiv2l2 "superkiller viralicidic act... 502 4.7e-48 1
UNIPROTKB|F5H7E2 - symbol:SKIV2L2 "Superkiller viralicidi... 503 2.9e-47 1
MGI|MGI:1919448 - symbol:Skiv2l2 "superkiller viralicidic... 504 3.1e-47 1
UNIPROTKB|F1N993 - symbol:F1N993 "Uncharacterized protein... 503 3.9e-47 1
UNIPROTKB|P42285 - symbol:SKIV2L2 "Superkiller viralicidi... 503 4.0e-47 1
UNIPROTKB|E2RCI5 - symbol:SKIV2L2 "Uncharacterized protei... 502 5.1e-47 1
ZFIN|ZDB-GENE-040426-2854 - symbol:skiv2l2 "superkiller v... 494 3.6e-46 1
UNIPROTKB|F1SLL6 - symbol:SKIV2L2 "Uncharacterized protei... 492 6.1e-46 1
FB|FBgn0001986 - symbol:l(2)35Df "lethal (2) 35Df" specie... 482 7.4e-45 1
UNIPROTKB|F1MJX4 - symbol:SKIV2L2 "Uncharacterized protei... 467 2.2e-43 1
SGD|S000003586 - symbol:MTR4 "ATP-dependent 3'-5' RNA hel... 447 4.4e-41 1
UNIPROTKB|D4AE49 - symbol:D4AE49 "Uncharacterized protein... 438 1.5e-40 1
UNIPROTKB|F1MAH7 - symbol:F1MAH7 "Uncharacterized protein... 438 3.9e-40 1
POMBASE|SPAC6F12.16c - symbol:mtr4 "ATP-dependent RNA hel... 413 2.1e-37 1
ASPGD|ASPL0000070749 - symbol:mtr4 species:162425 "Emeric... 411 3.2e-37 1
TAIR|locus:2026001 - symbol:MTR4 "homolog of yeast MTR4" ... 395 1.4e-35 1
CGD|CAL0003794 - symbol:orf19.1335 species:5476 "Candida ... 385 2.1e-34 1
UNIPROTKB|G4NH56 - symbol:MGG_03931 "FRQ-interacting RNA ... 347 2.4e-30 1
WB|WBGene00012342 - symbol:mtr-4 species:6239 "Caenorhabd... 340 1.2e-29 1
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller... 338 2.3e-29 1
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 309 2.4e-26 1
TAIR|locus:2075566 - symbol:AT3G46960 species:3702 "Arabi... 215 3.8e-16 1
UNIPROTKB|E2RSD6 - symbol:SKIV2L "Uncharacterized protein... 204 5.2e-15 1
UNIPROTKB|F1LP39 - symbol:Skiv2l "Protein Skiv2l" species... 198 2.2e-14 1
RGD|1303059 - symbol:Skiv2l "superkiller viralicidic acti... 198 2.2e-14 1
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 196 3.7e-14 1
UNIPROTKB|F5H6Y7 - symbol:SKIV2L "Helicase SKI2W" species... 194 3.8e-14 1
UNIPROTKB|F5H7B0 - symbol:SKIV2L "Helicase SKI2W" species... 194 4.8e-14 1
UNIPROTKB|F8VS23 - symbol:SKIV2L "Helicase SKI2W" species... 194 4.8e-14 1
UNIPROTKB|B4DM01 - symbol:SKIV2L "cDNA FLJ57529, highly s... 194 5.1e-14 1
UNIPROTKB|F8VNU1 - symbol:SKIV2L "Helicase SKI2W" species... 194 5.1e-14 1
UNIPROTKB|Q15477 - symbol:SKIV2L "Helicase SKI2W" species... 194 6.0e-14 1
UNIPROTKB|E1BMS0 - symbol:LOC100139548 "Uncharacterized p... 193 7.7e-14 1
DICTYBASE|DDB_G0277211 - symbol:DDB_G0277211 "superkiller... 191 1.4e-13 1
UNIPROTKB|F1RQW4 - symbol:SKIV2L "Uncharacterized protein... 188 2.6e-13 1
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ... 168 6.8e-13 2
POMBASE|SPCC550.03c - symbol:SPCC550.03c "Ski complex RNA... 168 3.4e-11 1
ASPGD|ASPL0000004985 - symbol:AN6007 species:162425 "Emer... 166 6.1e-11 1
UNIPROTKB|H7C4L3 - symbol:SKIV2L "Helicase SKI2W" species... 145 3.2e-10 1
UNIPROTKB|H9L343 - symbol:H9L343 "Uncharacterized protein... 130 1.9e-08 1
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso... 136 3.6e-06 1
SGD|S000004390 - symbol:SKI2 "Ski complex component and p... 134 1.7e-05 2
GENEDB_PFALCIPARUM|PFF0100w - symbol:PFF0100w "putative A... 125 8.4e-05 1
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 182/219 (83%), Positives = 206/219 (94%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
MHVVPVQLPLIS LS++R+SVP DLRP++ARQSILLA+QEL SRFP G PKL+PVKDM I
Sbjct: 679 MHVVPVQLPLISALSRLRISVPSDLRPVEARQSILLALQELSSRFPLGFPKLHPVKDMNI 738
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
+D E+VDLV+QIEE+E KL AHP++KS+D+ QI+ FQRKAEVN+EIQQLKSKMRDSQ+QK
Sbjct: 739 QDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQK 798
Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
FRDELKNRSRVLKKLGHI+ADGVVQ+KGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 799 FRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 858
Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
ALASCFIPVDKS+EQ+NLR EL KPLQQLQ+SARKIAE+
Sbjct: 859 ALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEI 897
>RGD|1305984 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2 (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000460
"maturation of 5.8S rRNA" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0000178 "exosome (RNase complex)" evidence=ISO]
InterPro:IPR012961 Pfam:PF08148 RGD:1305984 GO:GO:0005524
GO:GO:0016818 eggNOG:COG4581 HOGENOM:HOG000163047
InterPro:IPR025696 Pfam:PF13234 OrthoDB:EOG4D52WW IPI:IPI00372914
EMBL:BC091305 UniGene:Rn.145315 STRING:Q5BJW0 InParanoid:Q5BJW0
Genevestigator:Q5BJW0 Uniprot:Q5BJW0
Length = 337
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 96/220 (43%), Positives = 150/220 (68%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 21 MQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 80
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ ++
Sbjct: 81 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 140
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q
Sbjct: 141 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQA 200
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ + SSE L +LA PL+Q+QE A++IA+V
Sbjct: 201 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 240
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 503 (182.1 bits), Expect = 2.9e-47, P = 2.9e-47
Identities = 96/220 (43%), Positives = 150/220 (68%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 625 MQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGI 684
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ ++
Sbjct: 685 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 744
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q
Sbjct: 745 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 804
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ + SSE L +LA PL+Q+QE A++IA+V
Sbjct: 805 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 844
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 504 (182.5 bits), Expect = 3.1e-47, P = 3.1e-47
Identities = 97/220 (44%), Positives = 150/220 (68%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 724 MQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGI 783
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL+ + E +RKA++ +I+ K +++ ++
Sbjct: 784 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKARTV 843
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q
Sbjct: 844 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQA 903
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ + SSE L +LA PL+Q+QE A++IA+V
Sbjct: 904 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 943
>UNIPROTKB|F1N993 [details] [associations]
symbol:F1N993 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
Length = 1031
Score = 503 (182.1 bits), Expect = 3.9e-47, P = 3.9e-47
Identities = 96/220 (43%), Positives = 150/220 (68%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 715 MQVVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 774
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL+ + E + +RKA++ +I+ K +++ ++
Sbjct: 775 KDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETIYKLCERKAQIAMDIKAAKRELKKARTV 834
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q
Sbjct: 835 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 894
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ + S+E L +LA PL+Q+QE A++IA V
Sbjct: 895 TALLSCFVFQENSNEMPKLTEQLAGPLRQMQECAKRIARV 934
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 503 (182.1 bits), Expect = 4.0e-47, P = 4.0e-47
Identities = 96/220 (43%), Positives = 150/220 (68%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 726 MQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGI 785
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ ++
Sbjct: 786 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 845
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q
Sbjct: 846 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 905
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ + SSE L +LA PL+Q+QE A++IA+V
Sbjct: 906 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 945
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 502 (181.8 bits), Expect = 5.1e-47, P = 5.1e-47
Identities = 96/220 (43%), Positives = 150/220 (68%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 726 MQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 785
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ ++
Sbjct: 786 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 845
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q
Sbjct: 846 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQA 905
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ + SSE L +LA PL+Q+QE A++IA+V
Sbjct: 906 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 945
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 494 (179.0 bits), Expect = 3.6e-46, P = 3.6e-46
Identities = 95/220 (43%), Positives = 149/220 (67%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV L LI+++S +RL +P DLRP D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 718 MQVVPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGIPLLDPIDDMGI 777
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+DP + ++ ++E EH+++ HPL+ + E + ++KA + +I+ K +++ ++
Sbjct: 778 KDPALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYKLCEKKALIAGDIKAAKRELKKARTV 837
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R RVL++LG + V+++KGR AC +GDELL+TE+MFNG FNDL Q
Sbjct: 838 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACETSSGDELLLTEMMFNGLFNDLTAEQA 897
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ + ++E L +L PL+Q+QE A++IA+V
Sbjct: 898 TALLSCFVFQENANEMPKLTEQLGGPLRQMQECAKRIAKV 937
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 492 (178.3 bits), Expect = 6.1e-46, P = 6.1e-46
Identities = 97/223 (43%), Positives = 150/223 (67%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRPLD RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 727 MQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 786
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ ++
Sbjct: 787 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 846
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLID---TGDELLVTELMFNGTFNDLDH 176
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL
Sbjct: 847 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISRWYSADELLLTEMMFNGLFNDLSA 906
Query: 177 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
Q AL SCF+ + SSE L +LA PL+Q+QE A++IA+V
Sbjct: 907 EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 949
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 482 (174.7 bits), Expect = 7.4e-45, P = 7.4e-45
Identities = 98/220 (44%), Positives = 145/220 (65%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV LI+ +S IR+ P DLR D R+++L +QE + RFP G P LNP+ DM I
Sbjct: 739 MEVVPVAHTLITQISSIRVYFPNDLRSADNRRAVLKTIQEAKKRFPLGPPVLNPIDDMNI 798
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQI-RCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D E D+VN I + E +L HPL+KS + +I R +Q K + ++Q LK++++ ++
Sbjct: 799 KDREFRDIVNTISQFEKRLEEHPLHKSPELERIHRRYQDKVTLQKQLQDLKAELKAARSL 858
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK+R RVL+++G+ V++ KGR AC + + DELL+TE++FNG FNDL Q
Sbjct: 859 LQMDELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADELLMTEMIFNGVFNDLTAPQA 918
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ +KSSE + EL+ PL+ +Q+ AR+IA+V
Sbjct: 919 VALLSCFVCDEKSSESVKSATELSGPLRSMQDLARRIAKV 958
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 467 (169.5 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 92/214 (42%), Positives = 142/214 (66%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRPLD RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 724 MQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 783
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ ++
Sbjct: 784 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 843
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLID---TGDELLVTELMFNGTFNDLDH 176
DELK R RVL++LG + V+++KGR AC I + DELL+TE+MFNG FNDL
Sbjct: 844 LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISRWYSADELLLTEMMFNGLFNDLSA 903
Query: 177 HQVAALASCFIPVDKSSEQINLRMELAKPLQQLQ 210
Q AL SCF+ + SSE L +LA PL+Q+Q
Sbjct: 904 EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQ 937
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 447 (162.4 bits), Expect = 4.4e-41, P = 4.4e-41
Identities = 91/222 (40%), Positives = 146/222 (65%)
Query: 3 VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
V+P+ L I ++ +RL +P D+R ++++ +++E+ RFP G+P L+PVK+MKIED
Sbjct: 759 VIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 818
Query: 63 PEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKF 121
+ + L+ +I+ L KL ++PL S E + RK +++ +++QLK K+ +SQ
Sbjct: 819 EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQ 878
Query: 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 181
D+L+ R RVL++LG + +++LKGR AC I +GDELL+TEL+FNG FN+L Q AA
Sbjct: 879 LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAA 938
Query: 182 LASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMS 223
L SCF ++ E L+ ELA+PL+ ++E A KIA++ K S
Sbjct: 939 LLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDS 980
>UNIPROTKB|D4AE49 [details] [associations]
symbol:D4AE49 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR012961 Pfam:PF00271 Pfam:PF08148 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00690000102230 InterPro:IPR025696 Pfam:PF13234
IPI:IPI00776783 PRIDE:D4AE49 Ensembl:ENSRNOT00000060695
ArrayExpress:D4AE49 Uniprot:D4AE49
Length = 764
Score = 438 (159.2 bits), Expect = 1.5e-40, P = 1.5e-40
Identities = 89/220 (40%), Positives = 139/220 (63%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 448 MQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 507
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ ++
Sbjct: 508 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 567
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
DELK R L + G ++ KG C DELL+TE+MFNG FNDL Q
Sbjct: 568 LQMDELKCRKPCLFRPGKAFLLDLIHRKGYHFCYKSCADELLLTEMMFNGLFNDLSSEQA 627
Query: 180 AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
AL SCF+ + SSE L +LA PL+Q+QE A++IA+V
Sbjct: 628 TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 667
>UNIPROTKB|F1MAH7 [details] [associations]
symbol:F1MAH7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
Length = 1046
Score = 438 (159.2 bits), Expect = 3.9e-40, P = 3.9e-40
Identities = 92/222 (41%), Positives = 144/222 (64%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 729 MQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGI 788
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D + ++ ++E EH++++HPL+ + E ++KA++ +I+ K +++ ++
Sbjct: 789 QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTV 848
Query: 120 KFRDELKNRSRVLKKL-GHINADGVVQLKGRAACLI-DTGDELLVTELMFNGTFNDLDHH 177
DELK R +KL I +D QLK R + + + DELL+TE+MFNG FNDL
Sbjct: 849 LQMDELKCRKPCTRKLIFKITSDEK-QLKHRVSLTVHSSADELLLTEMMFNGLFNDLSSE 907
Query: 178 QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
Q AL SCF+ + SSE L +LA PL+Q+QE A++IA+V
Sbjct: 908 QATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKV 949
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 413 (150.4 bits), Expect = 2.1e-37, P = 2.1e-37
Identities = 91/223 (40%), Positives = 143/223 (64%)
Query: 3 VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
VVP L + ++ IR+ +P DL+ + ++ A+ E++ RFP+G+ L+PV++M I++
Sbjct: 802 VVPFLLSSLDGIAHIRVFLPNDLKSQGQKLTVGKALSEVKRRFPEGITLLDPVENMNIKE 861
Query: 63 PEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKF 121
P + L+ ++ LE +L ++PL N S+ E + + RK + E++ LK K+ ++
Sbjct: 862 PTFIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKARSIMQ 921
Query: 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 181
DEL +R RVL++LG +D V+++KGR AC I +GD LL+TEL+FNG FNDL Q AA
Sbjct: 922 LDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGMFNDLTPEQCAA 981
Query: 182 LASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEVYKMS 223
L SC + +KS E ++ ELA PL+ LQE AR+IA+V K S
Sbjct: 982 LLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKES 1024
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 411 (149.7 bits), Expect = 3.2e-37, P = 3.2e-37
Identities = 93/225 (41%), Positives = 139/225 (61%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
M VVP+ L I +S +R+ VP DL+ D+R + V++++ RFP G+ L+P++DM I
Sbjct: 756 MEVVPLLLNCIQAISHVRMIVPKDLQSKDSRTDMGKKVEQIKKRFPDGIAVLDPIEDMGI 815
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D E + +IE LE +L +PL+ S E + K ++ ++I+ K K+ +
Sbjct: 816 KDDEFKKTLRKIEVLESRLVTNPLHNSPRLEELYEQYAEKLDLGNKIKATKKKISEGMAI 875
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
+ DELK R RVL++ G IN VVQLK R AC I TGDEL+++EL+FNG FN L Q
Sbjct: 876 QQLDELKCRKRVLRRFGFINEAEVVQLKARVACEISTGDELMLSELLFNGFFNKLTPEQA 935
Query: 180 AALASCFIPVDKSSEQINL-RMELAKPLQQLQESARKIAEVYKMS 223
AA+ S F+ +K+ E L + ELAKPL+++Q AR IA+V + S
Sbjct: 936 AAVLSVFVFEEKTKETPPLSKEELAKPLKEIQAQARIIAKVAQES 980
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 395 (144.1 bits), Expect = 1.4e-35, P = 1.4e-35
Identities = 90/218 (41%), Positives = 133/218 (61%)
Query: 3 VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
VV V L I +LS +++P DL PL+AR++ L V EL SR P G+P L+P DMKI+
Sbjct: 675 VVTVPLSQIKSLSSAIMNIPKDLVPLEARENALKKVSELLSRHPDGIP-LDPEVDMKIKS 733
Query: 63 PEVVDLVNQIEELEHKLFAHPLNKSQ-DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKF 121
V ++E LE+ H + KS +++ Q K E+ +I+ LK +R S F
Sbjct: 734 SSYKKTVRRLEALENLFEKHKIAKSPLITEKLKVLQMKEELIAKIKSLKKTVRSSTALAF 793
Query: 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 181
+DELK R RVL++LG+I +D VV+LKG+ AC I + +EL +TELMF+G F D ++ +
Sbjct: 794 KDELKARKRVLRRLGYITSDNVVELKGKVACEISSAEELTLTELMFSGIFKDAKVEELVS 853
Query: 182 LASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
L SCF+ ++ + R EL QLQ++AR++AEV
Sbjct: 854 LLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEV 891
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 385 (140.6 bits), Expect = 2.1e-34, P = 2.1e-34
Identities = 79/221 (35%), Positives = 139/221 (62%)
Query: 4 VPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDP 63
+ + L I +S +RL VP D + A+++++ +++L R P G+P ++PV+ MKI D
Sbjct: 793 ISITLSSIEKISTVRLRVPDDYKSSTAKRTLVKTLKDLPKRLPDGIPLIDPVQSMKITDD 852
Query: 64 EVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKFR 122
+ L+ +I+ L+ K+ ++PLN S + + + K ++N++I++L+ ++ ++
Sbjct: 853 DFKKLLQKIDILDSKIVSNPLNNSARLDDLYAKYTAKVDLNNQIKKLEEQIFQAKSIIQL 912
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAAL 182
D+L N RVLKKL ++ VV+LKGR A + TGDEL++TEL+F+G FN+L Q+ L
Sbjct: 913 DQLSNMKRVLKKLEFTGSEEVVELKGRVAAELSTGDELMITELLFSGFFNELTPQQICGL 972
Query: 183 ASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMS 223
S FI +++ E L+ ELA+P + + E+A KIA++ K S
Sbjct: 973 LSAFIFQERAKELPKLKPELAEPAKVIHETANKIAKISKQS 1013
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 347 (127.2 bits), Expect = 2.4e-30, P = 2.4e-30
Identities = 80/226 (35%), Positives = 138/226 (61%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
+ VVP L + +S+IR+ +P D+ L Q + ++E++ RFP G+P L+P+++M I
Sbjct: 786 LEVVPCLLTCMVAISQIRIFMPKDMDHLGKSQ-VSHGLEEVQRRFPDGVPILDPIENMGI 844
Query: 61 EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQI-RCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+D L+ +IE LE +L ++PL+ S + ++ ++ K E+ +I++ K + S
Sbjct: 845 KDDSFKKLMRKIEVLESRLLSNPLHGSPNLPELWDKYKIKTELTSQIKETKRAINKSYSI 904
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDT--GDELLVTELMFNGTFNDLDHH 177
DELK+R RVL++L IN + VVQ+K R AC I + G EL+++EL+FNG FN+L+
Sbjct: 905 AQLDELKSRMRVLRRLNFINENEVVQMKARVACEISSTEGHELVISELLFNGFFNELEPE 964
Query: 178 QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMS 223
AA+ SCF+ D+ E L+ +L K ++++ A+ IA + + S
Sbjct: 965 VCAAILSCFV-FDEKMEGTPLKEDLDKLVREIHAQAKTIARISRES 1009
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 340 (124.7 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 75/217 (34%), Positives = 123/217 (56%)
Query: 4 VPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDP 63
VP+ + I+ +S +RL VP D+ D + + + RF +P L+P++DM+I+
Sbjct: 714 VPMTIDRITAISAVRLKVPADIDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQDMEIKTV 773
Query: 64 EVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKFR 122
E+ +L+ + + LE +L H + K + ++ F++K + E+ LK++ + Q
Sbjct: 774 EMKELIAREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHL 833
Query: 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAAL 182
+EL NR RVL++LG++ D + LKG AC + DEL++TE++ G FN LD Q AAL
Sbjct: 834 EELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAAL 893
Query: 183 ASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
SCF+ DK + L EL L +L E AR +A+V
Sbjct: 894 LSCFVFQDKCAAP-KLATELQTCLSELHEQARNVAKV 929
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 338 (124.0 bits), Expect = 2.3e-29, P = 2.3e-29
Identities = 72/225 (32%), Positives = 131/225 (58%)
Query: 3 VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQ--GLPKLNPVKDMKI 60
++PV + L ++ + L V + + + + ++E E+RF + G+P ++P++DMKI
Sbjct: 806 IIPVSIKLFDGITSVCLYVKKEQPTQEFKTHLFKTLKETENRFKKDGGIPLIDPIEDMKI 865
Query: 61 EDPEVVDLVNQIEELEHKLFAHP-LNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
+DP L+ +IE LE + + N + E + ++K E+ EI+QL+ +++
Sbjct: 866 KDPNFKKLIKKIETLESRFSSTACFNDTDIEERCNLLEKKNEITKEIKQLQKQIKSGDEV 925
Query: 120 KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
+D+L++ R+L +LG+I DGVV LKGR AC I GDEL+++EL+F G FNDL Q
Sbjct: 926 ILKDDLRSMKRILTRLGYITDDGVVALKGRVACEISAGDELVISELLFAGLFNDLSVEQC 985
Query: 180 AALASCFIPVDKSS--EQIN---LRMELAKPLQQLQESARKIAEV 219
A+ SCF+ ++ S +N ++ +L + ++++A K+ V
Sbjct: 986 VAVFSCFVFQNEGSANNDVNNPKIKPDLVPLYRVIRDTASKVVTV 1030
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 309 (113.8 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 75/220 (34%), Positives = 126/220 (57%)
Query: 3 VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
+V V L + +S IR+ +P +L +++ V E+ F + +P L+P++ M IE
Sbjct: 716 IVSVLLTAVCNISSIRIYMPRELNSNESKLRAYRRVNEVIEEFKE-IPYLDPLEHMHIES 774
Query: 63 PEVVDLVNQIEELEHKLFAHPLNK-SQDENQIRCFQRKAEVNHEIQQLKSKMRDSQ-IQK 120
+ + ++E LE KLF P K S+ + F++K + +I+ + +K+ +++ I +
Sbjct: 775 STLSLSLRKLEILEPKLFDSPYYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQ 834
Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
R ELK R RVL++LG + V+ +KGR AC I +GDELL+ EL+F G FN + ++A
Sbjct: 835 LR-ELKIRQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIA 893
Query: 181 ALASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEV 219
A SCF+ DKS +NL+ K + E+A++IA V
Sbjct: 894 AALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATV 933
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 215 (80.7 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 58/191 (30%), Positives = 107/191 (56%)
Query: 35 LLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIR 94
LL ++ ++FP P L+PVKD+K++D E+V+ + L K+ +NK ++
Sbjct: 1065 LLDLKSDGNKFP---PALDPVKDLKLKDAELVETYYKWTNLLQKM---SMNKCHGCVKL- 1117
Query: 95 CFQRKAEVNHEIQQLKSKMRDSQIQKFRDEL------KNRSRVLKKLGHINADGVVQLKG 148
+ ++ EI++ K+ ++D + Q + L + R VLK +G I+ D VVQ+KG
Sbjct: 1118 --EEHMKLAREIKKHKTDLKDLEFQMSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKG 1175
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQ 208
R AC +++G+EL+ T +F F +L+ + A+ S F+ K++ L +LAK Q+
Sbjct: 1176 RVACEMNSGEELICTVCLFENQFEELEPEEAVAIMSAFVFQQKNTSAPTLTPKLAKAKQR 1235
Query: 209 LQESARKIAEV 219
L ++A ++ E+
Sbjct: 1236 LYDTAIRLGEL 1246
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 204 (76.9 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 60/194 (30%), Positives = 105/194 (54%)
Query: 33 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 88
++ AVQEL +P G P L+PV D++++D VV+ + +LE ++ A ++ +
Sbjct: 960 AVTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIWGAQCVHSPR 1019
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L G
Sbjct: 1020 FSAQYVKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 1078
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
R AC + + ELL+TELMF+ + L ++AAL S C P D EQ L L +
Sbjct: 1079 RVACAMSS-HELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPG-EQ--LPSTLKQG 1134
Query: 206 LQQLQESARKIAEV 219
+++++ AR+I EV
Sbjct: 1135 VERVRAVARRIGEV 1148
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 198 (74.8 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 59/204 (28%), Positives = 105/204 (51%)
Query: 23 PDLRPLDARQSILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKL 79
P R ++ AVQEL +P G P L+P+ D++++D VV+ + +LE +
Sbjct: 910 PKFRKDPPLAAVTTAVQELLRLAQAYPAGPPTLDPINDLQLKDVAVVEGGLRARKLEELI 969
Query: 80 F-AHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHI 138
A ++ + Q Q + ++ E+++L+ + D + E R VL+ LG++
Sbjct: 970 RGAQCVHSPRFPAQYVKLQERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYV 1028
Query: 139 NADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQ 195
+ G V+L GR AC + + ELL+TELMF+ + L ++AAL S C P D +
Sbjct: 1029 DEAGTVKLAGRVACAMSS-HELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQ- 1086
Query: 196 INLRMELAKPLQQLQESARKIAEV 219
L L + +++++ A++I EV
Sbjct: 1087 --LPSTLKQGVERVKAVAKRIGEV 1108
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 198 (74.8 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 59/204 (28%), Positives = 105/204 (51%)
Query: 23 PDLRPLDARQSILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKL 79
P R ++ AVQEL +P G P L+P+ D++++D VV+ + +LE +
Sbjct: 945 PKFRKDPPLAAVTTAVQELLRLAQAYPAGPPTLDPINDLQLKDVAVVEGGLRARKLEELI 1004
Query: 80 F-AHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHI 138
A ++ + Q Q + ++ E+++L+ + D + E R VL+ LG++
Sbjct: 1005 RGAQCVHSPRFPAQYVKLQERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYV 1063
Query: 139 NADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQ 195
+ G V+L GR AC + + ELL+TELMF+ + L ++AAL S C P D +
Sbjct: 1064 DEAGTVKLAGRVACAMSS-HELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQ- 1121
Query: 196 INLRMELAKPLQQLQESARKIAEV 219
L L + +++++ A++I EV
Sbjct: 1122 --LPSTLKQGVERVKAVAKRIGEV 1143
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 196 (74.1 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 65/226 (28%), Positives = 112/226 (49%)
Query: 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQ----GLPKLNPVK 56
+ V+P ++ I +K RL P R Q+I A QEL R + G+ L+PV
Sbjct: 936 LKVIPERI--IDNYNK-RLQ--PRFRLDPPGQAISTATQEL-LRLAEANMGGMTVLDPVN 989
Query: 57 DMKIEDPEVVDLVNQIEELEHKLFA-HPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRD 115
D+ ++ +VV+ V + L+ L H ++ Q Q + V E+ +L + D
Sbjct: 990 DLHLKGVDVVEGVMRQRVLQDSLKDFHCIHSPTFSEQFTRVQERMSVQEELDKLLFLVSD 1049
Query: 116 SQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLD 175
+ E R +VL+ L ++++ G VQLKGR AC I + ELL+TEL+F T + L
Sbjct: 1050 QSLTLL-PEYHQRIKVLEALQYVDSSGAVQLKGRVACQISS-HELLLTELLFENTLSPLA 1107
Query: 176 HHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYK 221
+ AAL SC + + + ++ L + + Q+ A++I ++ +
Sbjct: 1108 PEESAALLSCLVFTQNTQIEPHITNTLQEGINQVLAVAQRIGDLQR 1153
>UNIPROTKB|F5H6Y7 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
Ensembl:ENST00000547296 Ensembl:ENST00000548561
Ensembl:ENST00000552010 Uniprot:F5H6Y7
Length = 880
Score = 194 (73.4 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 57/194 (29%), Positives = 102/194 (52%)
Query: 33 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 88
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 594 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 653
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L G
Sbjct: 654 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 712
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 713 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 768
Query: 206 LQQLQESARKIAEV 219
+++++ A++I EV
Sbjct: 769 IERVRAVAKRIGEV 782
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 194 (73.4 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 57/194 (29%), Positives = 102/194 (52%)
Query: 33 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 88
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 767 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 826
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L G
Sbjct: 827 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 885
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 886 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 941
Query: 206 LQQLQESARKIAEV 219
+++++ A++I EV
Sbjct: 942 IERVRAVAKRIGEV 955
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 194 (73.4 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 57/194 (29%), Positives = 102/194 (52%)
Query: 33 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 88
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 767 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 826
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L G
Sbjct: 827 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 885
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 886 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 941
Query: 206 LQQLQESARKIAEV 219
+++++ A++I EV
Sbjct: 942 IERVRAVAKRIGEV 955
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 194 (73.4 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 57/194 (29%), Positives = 102/194 (52%)
Query: 33 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 88
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 802 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 861
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L G
Sbjct: 862 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 920
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 921 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 976
Query: 206 LQQLQESARKIAEV 219
+++++ A++I EV
Sbjct: 977 IERVRAVAKRIGEV 990
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 194 (73.4 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 57/194 (29%), Positives = 102/194 (52%)
Query: 33 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 88
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 802 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 861
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L G
Sbjct: 862 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 920
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 921 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 976
Query: 206 LQQLQESARKIAEV 219
+++++ A++I EV
Sbjct: 977 IERVRAVAKRIGEV 990
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 194 (73.4 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 57/194 (29%), Positives = 102/194 (52%)
Query: 33 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 88
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 960 AVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPR 1019
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L G
Sbjct: 1020 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 1078
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
R AC + + ELL+TELMF+ + L ++AAL S C P D + N L +
Sbjct: 1079 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQG 1134
Query: 206 LQQLQESARKIAEV 219
+++++ A++I EV
Sbjct: 1135 IERVRAVAKRIGEV 1148
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 193 (73.0 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 57/194 (29%), Positives = 102/194 (52%)
Query: 33 SILLAVQEL---ESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKSQ 88
++ AVQEL P G P L+PV D++++D VV+ + +LE + A ++ +
Sbjct: 960 AVTTAVQELLRLAQAHPTGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPR 1019
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L G
Sbjct: 1020 FPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAG 1078
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKP 205
R AC + + ELL+TELMF+ + L ++AAL S C P D + L L +
Sbjct: 1079 RVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDPGDQ---LPSTLKQG 1134
Query: 206 LQQLQESARKIAEV 219
+++++ A++I EV
Sbjct: 1135 VERVRTVAKRIGEV 1148
>DICTYBASE|DDB_G0277211 [details] [associations]
symbol:DDB_G0277211 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
Length = 1378
Score = 191 (72.3 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 52/191 (27%), Positives = 100/191 (52%)
Query: 32 QSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVV---DLVNQIEELEHKLFAHPLNKSQ 88
Q +L ++E P G ++P+K +K++D + V D + IE+L + H +
Sbjct: 1094 QQLLRLIEEYP--LPLGPKSIDPIKQLKLKDVDFVSTYDHLQSIEKLIPESKCHKCPRLH 1151
Query: 89 DENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKG 148
D + +++ ++ + I+ K D + K + R +L +LG+I+ + V LKG
Sbjct: 1152 DHYEQT--EKRYQLQYAIRDAKYTASDENL-KLMPQFNIRLDILHELGYIDDENTVTLKG 1208
Query: 149 RAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQ 208
R + I+T ++L++TEL+F F +L+ +V ++ SC I +K + Q +L L + Q
Sbjct: 1209 RVSREINTCEDLVITELIFENAFINLEPSEVVSVLSCLIFQEKDAVQPSLTPRLEEAKQN 1268
Query: 209 LQESARKIAEV 219
L ++A K +V
Sbjct: 1269 LIKTAEKTYKV 1279
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 188 (71.2 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 59/195 (30%), Positives = 103/195 (52%)
Query: 33 SILLAVQELESRFPQ----GLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF-AHPLNKS 87
++ AVQEL R Q G P L+PV D++++D VV+ + +LE + A ++
Sbjct: 960 AVTTAVQEL-LRLAQAHLAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSP 1018
Query: 88 QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLK 147
+ Q + + ++ E+++L+ + D + E R VL+ LG+++ G V+L
Sbjct: 1019 RFPAQYVKLRERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLA 1077
Query: 148 GRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAK 204
GR AC + + ELL+TELMF+ + L ++AAL S C P D + L L +
Sbjct: 1078 GRVACAMSS-HELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQ---LPSTLKQ 1133
Query: 205 PLQQLQESARKIAEV 219
++++Q A++I EV
Sbjct: 1134 GVERVQAVAKRIGEV 1148
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 168 (64.2 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 39/123 (31%), Positives = 72/123 (58%)
Query: 102 VNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELL 161
++ E+++L+ + D ++ D + R +VL+ +G+I+ V LKGR AC +++G EL+
Sbjct: 1028 LSQEVEKLERLISDENLELLPD-YEQRLQVLEAMGYIDEQHNVVLKGRVACEVNSGWELI 1086
Query: 162 VTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ----INLRMELAKPLQQLQESARKIA 217
+TEL+ N D + ++ AL SCF+ ++ E+ I R+E K ++ E A K+
Sbjct: 1087 ITELVLNNFLGDFEPAEIVALLSCFVYEGRTQEEEPPLITPRLEKGKA--KILEIAEKLL 1144
Query: 218 EVY 220
+VY
Sbjct: 1145 KVY 1147
Score = 43 (20.2 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 26/113 (23%), Positives = 49/113 (43%)
Query: 4 VPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQ-GLPKLNPV-KDMKIE 61
VP PL+ + + PDL + RQ++ +L + P+ L+ V K ++I
Sbjct: 6 VPTNDPLVVDPTTVTTYECPDLNAEERRQNLKT---DLLNPSPEINWEILDLVNKPLEIN 62
Query: 62 DPEVVD-LVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKM 113
+++D LV E L F +S I +Q + +N E++ + +
Sbjct: 63 REKIIDKLVINPERLSRTQFR--FKRSGIHGHITGYQEEVNLN-ELENSNTSL 112
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 168 (64.2 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 43/162 (26%), Positives = 82/162 (50%)
Query: 59 KIEDPEVVDLVNQIEELEHKLFAHPLNKSQDE-NQIRCFQRKAEVNHEIQQLKSKMRDSQ 117
K+ D E + + L++KL +P+ + + ++ E+ I L S + D
Sbjct: 954 KVRDFEFCEAFEKRNFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISDQN 1013
Query: 118 IQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 177
++ D + R +VL++LG+I+A+ V LKGR AC I++ EL++TEL+ + D
Sbjct: 1014 LELLPD-YEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCE 1072
Query: 178 QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
+ AL S F+ +K+ + + L K + + A K+ ++
Sbjct: 1073 ETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQI 1114
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 166 (63.5 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 38/119 (31%), Positives = 62/119 (52%)
Query: 101 EVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDEL 160
++ I QLK M D +Q D + R +VLK LG ++ VQLKG+ AC I + DEL
Sbjct: 1076 QIKENISQLKQLMSDQNLQLLPD-YEQRIQVLKDLGFVDEQSRVQLKGKVACEIHSADEL 1134
Query: 161 LVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEV 219
++TEL+ + + ++ AL S F+ +K+ L L K + + + K+ +V
Sbjct: 1135 VLTELILENVLAEYEPEEIVALLSAFVFQEKTENVPTLNPRLEKGKEAIIRISEKVNDV 1193
>UNIPROTKB|H7C4L3 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] InterPro:IPR012961 Pfam:PF08148
GO:GO:0005524 EMBL:AL645922 GO:GO:0016818 HGNC:HGNC:10898
ChiTaRS:SKIV2L ProteinModelPortal:H7C4L3 PRIDE:H7C4L3
Ensembl:ENST00000491994 Uniprot:H7C4L3
Length = 182
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 38/126 (30%), Positives = 69/126 (54%)
Query: 97 QRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDT 156
+ + ++ E+++L+ + D + E R VL+ LG+++ G V+L GR AC + +
Sbjct: 27 RERMQIQKEMERLRFLLSDQSLLLL-PEYHQRVEVLRTLGYVDEAGTVKLAGRVACAMSS 85
Query: 157 GDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQINLRMELAKPLQQLQESA 213
ELL+TELMF+ + L ++AAL S C P D + N L + +++++ A
Sbjct: 86 -HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNT---LKQGIERVRAVA 141
Query: 214 RKIAEV 219
++I EV
Sbjct: 142 KRIGEV 147
>UNIPROTKB|H9L343 [details] [associations]
symbol:H9L343 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0055087 "Ski complex" evidence=IEA]
InterPro:IPR025696 Pfam:PF13234 GeneTree:ENSGT00690000102154
EMBL:AADN02042840 Ensembl:ENSGALT00000036117 OMA:LLSCHEL
Uniprot:H9L343
Length = 131
Score = 130 (50.8 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 37/128 (28%), Positives = 61/128 (47%)
Query: 46 PQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNH 104
P GLP L+PV +++ DP V+ + L L Q+ F + +
Sbjct: 6 PGGLPLLDPVGALQLRDPPAVEAAARARSLGAALGGFRCVHGPRFPQLYSQFAARRRLQA 65
Query: 105 EIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTE 164
+++QL+ ++ D + E + R VL+ LG++ G VQL GR A L+ ELL+TE
Sbjct: 66 QVEQLQYELSDRSLLLL-PEYRQRLGVLRALGYVADGGAVQLPGRVAALLSC-HELLLTE 123
Query: 165 LMFNGTFN 172
L+ +
Sbjct: 124 LLLGNVLS 131
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 136 (52.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 48/161 (29%), Positives = 84/161 (52%)
Query: 33 SILLAVQEL----ESRF--PQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKL--FAHPL 84
S++ AV EL ES P + +N K++ + V ++N ++ L K+ F
Sbjct: 909 SVVKAVTELNQLNESYIDNPDNIKYVNLSKEIIVNADSEVAMLNYVDHLLRKVGEFLPHT 968
Query: 85 NKSQDENQI-RCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGV 143
N + E + + ++R+ H I++L+ K + + D N+ +VL+ L +I+
Sbjct: 969 NIAGFEQEFAKVYERRMLEIH-IEELRFKNSARNLTLYPDYC-NKLKVLRALKYIDELDE 1026
Query: 144 VQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS 184
V LKG+ AC + +ELL+TEL+ FNDL+ ++AAL S
Sbjct: 1027 VTLKGKVACEMGQ-NELLITELILCNMFNDLEPAEIAALLS 1066
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 134 (52.2 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 41/125 (32%), Positives = 66/125 (52%)
Query: 99 KAEV-NHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTG 157
KA V +I++L M D + D K R VLK I+ + V LKGR AC I++G
Sbjct: 1066 KAHVIKKKIEELYHLMSDQNLSLLPDYEK-RLAVLKDTEFIDQNHNVLLKGRVACEINSG 1124
Query: 158 DELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQIN--LRMELAKPLQQLQESARK 215
EL++TEL+ + + ++ AL S F+ K+ E+ + LAK Q+++E +K
Sbjct: 1125 YELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKK 1184
Query: 216 IAEVY 220
+ V+
Sbjct: 1185 MLCVF 1189
Score = 37 (18.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 46 PQGLPKLNPVKDMKIEDP-EVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNH 104
P+G+ + +K M + P E D Q +EL+ LN+ +E IR +A++
Sbjct: 197 PEGMNR--GIKPM--DSPAENEDQNGQFKELKQ------LNEIDNELDIRIEANEAKLKE 246
Query: 105 EIQQLKS 111
E + KS
Sbjct: 247 EEKSAKS 253
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 125 (49.1 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 34/125 (27%), Positives = 68/125 (54%)
Query: 101 EVNHEIQQLKSKMRDSQIQK-FRDELKNRSRVLK------KLGHINADGVVQLKGRAACL 153
EV++ ++ LK++ I+ + +KN R++ K H + VV +KG+ A
Sbjct: 1128 EVSYNLENLKNEKDIKTIENSITEHIKNE-RIMNIKNETYKNNHEEKNYVVTMKGQIASA 1186
Query: 154 IDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRME-LAKPLQQLQES 212
I + DEL+++EL F+ F+ ++ + A SCF+ + +S++I + L + QQ+ ++
Sbjct: 1187 ILSVDELVISELFFSNFFSKYNYDYICAFLSCFVYDESTSKEITINDPILVEGYQQIIKT 1246
Query: 213 ARKIA 217
A +A
Sbjct: 1247 ANHVA 1251
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 227 227 0.00079 113 3 11 22 0.40 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 44
No. of states in DFA: 580 (62 KB)
Total size of DFA: 158 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.03u 0.12s 26.15t Elapsed: 00:00:01
Total cpu time: 26.04u 0.12s 26.16t Elapsed: 00:00:01
Start: Fri May 10 01:24:24 2013 End: Fri May 10 01:24:25 2013