Query 027140
Match_columns 227
No_of_seqs 142 out of 628
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:42:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l9o_A ATP-dependent RNA helic 100.0 3.5E-51 1.2E-55 412.4 20.0 225 1-225 792-1017(1108)
2 2xgj_A ATP-dependent RNA helic 100.0 1.7E-50 5.8E-55 404.4 22.5 225 1-225 694-919 (1010)
3 4a4z_A Antiviral helicase SKI2 100.0 2E-48 6.7E-53 389.1 18.3 219 1-225 680-904 (997)
4 3i4u_A ATP-dependent RNA helic 85.9 0.93 3.2E-05 38.4 5.0 61 123-184 18-79 (270)
5 2xau_A PRE-mRNA-splicing facto 80.9 2 6.9E-05 41.6 5.7 62 122-184 488-550 (773)
6 4aik_A Transcriptional regulat 74.4 5.3 0.00018 30.1 5.4 61 122-186 60-130 (151)
7 3jw4_A Transcriptional regulat 72.6 6.8 0.00023 28.8 5.5 61 122-186 71-141 (148)
8 3oop_A LIN2960 protein; protei 65.7 7.1 0.00024 28.4 4.2 61 122-186 65-135 (143)
9 4hbl_A Transcriptional regulat 64.8 14 0.00048 27.1 5.8 58 122-186 69-136 (149)
10 3ech_A MEXR, multidrug resista 63.5 5.8 0.0002 29.0 3.4 61 122-186 65-135 (142)
11 3fm5_A Transcriptional regulat 62.7 7.8 0.00027 28.5 4.0 61 122-186 68-138 (150)
12 3nrv_A Putative transcriptiona 62.3 9.4 0.00032 27.9 4.4 61 122-186 68-138 (148)
13 3deu_A Transcriptional regulat 61.5 8.2 0.00028 29.3 4.0 61 122-186 82-152 (166)
14 4b8x_A SCO5413, possible MARR- 61.1 21 0.00072 26.4 6.2 60 122-186 65-134 (147)
15 3e6m_A MARR family transcripti 60.9 8.9 0.00031 28.6 4.1 61 122-186 81-151 (161)
16 1lj9_A Transcriptional regulat 60.6 8.6 0.00029 27.9 3.9 61 122-186 57-127 (144)
17 3eco_A MEPR; mutlidrug efflux 60.6 6.4 0.00022 28.5 3.1 61 122-186 61-131 (139)
18 3kp7_A Transcriptional regulat 60.0 11 0.00039 27.6 4.5 60 123-186 66-137 (151)
19 3boq_A Transcriptional regulat 58.4 8 0.00027 28.7 3.4 60 123-186 77-146 (160)
20 1deb_A APC protein, adenomatou 57.5 32 0.0011 21.5 5.5 39 97-136 10-51 (54)
21 2nnn_A Probable transcriptiona 56.8 8 0.00028 27.8 3.1 61 122-186 66-136 (140)
22 2fbh_A Transcriptional regulat 56.7 10 0.00035 27.4 3.7 61 122-186 66-136 (146)
23 3bja_A Transcriptional regulat 54.2 6.8 0.00023 28.1 2.3 60 123-186 62-131 (139)
24 3k0l_A Repressor protein; heli 54.1 8.6 0.0003 28.8 3.0 60 123-186 75-144 (162)
25 3cjn_A Transcriptional regulat 53.7 13 0.00044 27.6 3.9 61 122-186 80-150 (162)
26 2gxg_A 146AA long hypothetical 53.5 13 0.00044 26.9 3.8 61 122-186 64-134 (146)
27 3nqo_A MARR-family transcripti 52.8 13 0.00044 28.9 3.9 61 122-186 71-141 (189)
28 2qww_A Transcriptional regulat 52.6 11 0.00037 27.7 3.3 63 122-186 69-143 (154)
29 3s2w_A Transcriptional regulat 51.2 11 0.00038 28.0 3.2 61 122-186 78-148 (159)
30 1s3j_A YUSO protein; structura 50.8 11 0.00039 27.6 3.1 61 122-186 65-135 (155)
31 2hr3_A Probable transcriptiona 50.5 6.7 0.00023 28.6 1.8 61 122-186 64-135 (147)
32 3bdd_A Regulatory protein MARR 50.3 16 0.00056 26.1 3.9 61 122-186 59-130 (142)
33 2eth_A Transcriptional regulat 49.9 12 0.00042 27.6 3.2 61 122-186 72-142 (154)
34 2fa5_A Transcriptional regulat 49.3 19 0.00065 26.6 4.2 61 122-186 77-147 (162)
35 3bpv_A Transcriptional regulat 48.9 16 0.00055 26.0 3.7 61 122-186 57-127 (138)
36 3bro_A Transcriptional regulat 47.4 16 0.00054 26.2 3.4 61 122-186 64-134 (141)
37 2rdp_A Putative transcriptiona 46.7 13 0.00045 27.0 2.9 61 122-186 70-140 (150)
38 2knz_A Ubiquilin-4; cytoplasm, 46.3 39 0.0013 20.9 4.7 44 122-170 8-51 (53)
39 3g3z_A NMB1585, transcriptiona 45.9 9.9 0.00034 27.7 2.1 61 122-186 59-129 (145)
40 1zhc_A Hypothetical protein HP 45.6 53 0.0018 22.0 5.6 61 55-115 9-69 (76)
41 2fbi_A Probable transcriptiona 43.8 7.4 0.00025 28.1 1.0 61 122-186 64-134 (142)
42 2nyx_A Probable transcriptiona 43.5 13 0.00044 28.1 2.4 61 122-186 73-143 (168)
43 3hsr_A HTH-type transcriptiona 43.3 34 0.0012 24.6 4.7 59 122-186 64-132 (140)
44 2fbk_A Transcriptional regulat 43.1 10 0.00035 29.1 1.8 60 123-186 101-170 (181)
45 2bwb_A Ubiquitin-like protein 42.7 12 0.00042 22.7 1.7 42 123-169 5-46 (46)
46 3bj6_A Transcriptional regulat 42.3 18 0.00063 26.3 3.1 61 122-186 68-138 (152)
47 3tgn_A ADC operon repressor AD 41.5 22 0.00077 25.6 3.5 64 122-186 65-138 (146)
48 1jgs_A Multiple antibiotic res 41.4 12 0.00041 26.8 1.9 62 122-186 62-133 (138)
49 2cp8_A NEXT to BRCA1 gene 1 pr 39.7 16 0.00054 23.3 1.9 42 124-169 8-49 (54)
50 1g6u_A Domain swapped dimer; d 37.2 19 0.00064 21.4 1.8 16 172-187 15-30 (48)
51 3ov9_A Nucleoprotein; orthogon 37.2 25 0.00084 29.3 3.3 80 62-155 158-241 (245)
52 1z91_A Organic hydroperoxide r 36.3 56 0.0019 23.4 5.0 59 122-186 68-136 (147)
53 2zqm_A Prefoldin beta subunit 36.2 46 0.0016 23.6 4.4 50 94-148 10-60 (117)
54 1wr1_B Ubiquitin-like protein 34.4 20 0.00068 23.0 1.8 43 122-169 14-56 (58)
55 2pex_A Transcriptional regulat 34.2 66 0.0023 23.2 5.1 59 122-186 75-143 (153)
56 2a61_A Transcriptional regulat 34.1 13 0.00044 26.8 1.0 61 122-186 61-131 (145)
57 3p1f_A CREB-binding protein; s 33.8 54 0.0019 23.5 4.5 70 26-95 8-81 (119)
58 3cdh_A Transcriptional regulat 32.5 8.8 0.0003 28.3 -0.2 33 122-154 71-113 (155)
59 3u2r_A Regulatory protein MARR 32.4 7.6 0.00026 29.3 -0.6 60 123-186 77-146 (168)
60 2lw9_A Unconventionnal myosin- 32.2 86 0.0029 19.4 4.3 38 94-132 3-40 (51)
61 2jy5_A Ubiquilin-1; UBA, alter 31.3 44 0.0015 20.6 3.1 42 123-169 10-51 (52)
62 1vej_A Riken cDNA 4931431F19; 31.0 22 0.00074 24.0 1.7 43 123-170 27-69 (74)
63 1okr_A MECI, methicillin resis 30.9 37 0.0012 23.9 3.1 62 122-186 42-120 (123)
64 1fxk_A Prefoldin; archaeal pro 29.8 43 0.0015 23.4 3.2 49 95-148 6-55 (107)
65 3f75_P Toxopain-2, cathepsin L 29.6 26 0.00089 25.2 2.0 20 169-188 71-90 (106)
66 2bv6_A MGRA, HTH-type transcri 28.9 56 0.0019 23.2 3.8 58 123-186 66-133 (142)
67 2x4h_A Hypothetical protein SS 27.8 51 0.0018 23.6 3.5 60 122-184 45-107 (139)
68 2p6r_A Afuhel308 helicase; pro 24.8 1.1E+02 0.0037 28.6 5.9 61 122-184 452-515 (702)
69 4h5l_A Nucleoprotein; nucleoca 24.6 59 0.002 27.1 3.5 29 127-155 219-247 (253)
70 1l8d_A DNA double-strand break 22.5 2E+02 0.0068 20.0 7.8 7 81-87 47-53 (112)
71 2wt7_B Transcription factor MA 22.0 1.7E+02 0.0059 20.3 5.1 56 60-115 18-73 (90)
72 2dah_A Ubiquilin-3; UBA domain 21.1 91 0.0031 19.4 3.1 41 124-169 8-48 (54)
73 1r7j_A Conserved hypothetical 20.7 53 0.0018 22.7 2.2 33 122-154 34-69 (95)
No 1
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-51 Score=412.41 Aligned_cols=225 Identities=40% Similarity=0.697 Sum_probs=200.3
Q ss_pred CEEEEecccccceeeeeeEEcCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 027140 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF 80 (227)
Q Consensus 1 ~~v~~v~l~~i~~is~~~l~ip~~~~~~~~~~~~~~~l~~~~~~~~~~~p~l~p~~~~ki~~~~~~~~~~~~~~l~~~l~ 80 (227)
+.+++|++++|..||++++++|+++++.++|+++.+++.++.++|++|+|.++|+++|++++.+|.+...+++.++.++.
T Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 871 (1108)
T 3l9o_A 792 CAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLS 871 (1108)
T ss_dssp CCCCCEESSCEEEEEEEECCCCTTTTSHHHHHHHHHHHHHHHHHCSSCCTTHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEechhheeeccceEEecCCCcCCHHHHHHHHHHHHHHHHhcCCCCcccChhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCch
Q 027140 81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE 159 (227)
Q Consensus 81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~E 159 (227)
+||||.| ++++||++++++.+++++++++++++++++++.++++|++|++||++|||||++++||+||||||||+|+||
T Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~e 951 (1108)
T 3l9o_A 872 SNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDE 951 (1108)
T ss_dssp HSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTTCCCSHHHHHHHC-CCTTH
T ss_pred hCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCCCcCcHHhHHHHHhcCccH
Confidence 9999999 999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHhhhcccccCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027140 160 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSAN 225 (227)
Q Consensus 160 LllTEll~~g~f~~L~p~eiaAllS~~V~~~r~~~~~~l~~~l~~~~~~l~~ia~~i~~v~~~~~~ 225 (227)
||+|||||+|+|++|+|+||||+|||||||+|+++.|.+++.|++++.+++++|++|+++|.+||.
T Consensus 952 l~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~ 1017 (1108)
T 3l9o_A 952 LLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKI 1017 (1108)
T ss_dssp HHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999888999999999999999999999999999985
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-50 Score=404.35 Aligned_cols=225 Identities=40% Similarity=0.697 Sum_probs=218.7
Q ss_pred CEEEEecccccceeeeeeEEcCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 027140 1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF 80 (227)
Q Consensus 1 ~~v~~v~l~~i~~is~~~l~ip~~~~~~~~~~~~~~~l~~~~~~~~~~~p~l~p~~~~ki~~~~~~~~~~~~~~l~~~l~ 80 (227)
|.+++|++++|..||++++++|+++++.+.++.+.++++++.++|++++|.+||+++|++++.++.+...+++.+++++.
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 773 (1010)
T 2xgj_A 694 CAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLS 773 (1010)
T ss_dssp EEEEEECGGGEEEEEEEECCCCSSTTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEechhhcceeeeeeEecccccCChHHHHHHHHHHHHHHHhcccCCcccCchhhhccccHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCch
Q 027140 81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE 159 (227)
Q Consensus 81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~E 159 (227)
+||||.| ++++||++++++.+++++++.+++++++.+++.+++||++|++||++|||||++++||+||||||||+|+||
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~e 853 (1010)
T 2xgj_A 774 SNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDE 853 (1010)
T ss_dssp TSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCH
T ss_pred hCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccH
Confidence 9999999 999999999999999999999999999988889999999999999999999998999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHhhhcccccCCCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027140 160 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEVYKMSAN 225 (227)
Q Consensus 160 LllTEll~~g~f~~L~p~eiaAllS~~V~~~r~~~~~~l~~~l~~~~~~l~~ia~~i~~v~~~~~~ 225 (227)
||+|||||+|+|++|+|+||||+|||||||+|+++.|.++++|.+++++++++|++|+++|.+||.
T Consensus 854 l~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 919 (1010)
T 2xgj_A 854 LLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKI 919 (1010)
T ss_dssp HHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999998888999999999999999999999999999985
No 3
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2e-48 Score=389.14 Aligned_cols=219 Identities=21% Similarity=0.303 Sum_probs=186.5
Q ss_pred CEEEEecccccceeeeeeEEcC-CCC--CCHHHHHHHHHHHHHHHhhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHH
Q 027140 1 MHVVPVQLPLISTLSKIRLSVP-PDL--RPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEH 77 (227)
Q Consensus 1 ~~v~~v~l~~i~~is~~~l~ip-~~~--~~~~~~~~~~~~l~~~~~~~~~~~p~l~p~~~~ki~~~~~~~~~~~~~~l~~ 77 (227)
+.+++|++++|..||++++++| +++ +++.+++.+.++++++.+. |.++|++++++++.++.+...+++.++.
T Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (997)
T 4a4z_A 680 FYMEEVPVTAIEVITKRKFAAPLGKVIKKDVAALNEFNAETNNILDG-----KTLKEAINIEKQGLKIHQILLDRTNIRD 754 (997)
T ss_dssp CCEEEEECC-CCEEEEEECC-CHHHHHHTCHHHHHHHHHHHHHHHHS-----CCCCCC------CCHHHHHHHHHHHHHH
T ss_pred eEEEEeccchhhhhhcccccCChHhhhcCCHHHHHHHHHHHHHHhcc-----CCCCchhhcccccHHHHHHHHHHHHHHH
Confidence 3578999999999999999998 665 4788899999999988654 7899999999999999999999999999
Q ss_pred HHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcC
Q 027140 78 KLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDT 156 (227)
Q Consensus 78 ~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s 156 (227)
++.+||||.| ++++||++++++.+++++++.|++++++ +++.++++|++|++||++|||||++++||+||||||||+|
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~ 833 (997)
T 4a4z_A 755 EIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSD-QNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINS 833 (997)
T ss_dssp C------------CCSHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHTTSBCTTCCBCHHHHHHTTCCS
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHcCCcCCCCcccHHhHHHhhhcC
Confidence 9999999999 9999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhCCCCCCCHHHHHHHhhhcccccCC--CCCcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027140 157 GDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKS--SEQINLRMELAKPLQQLQESARKIAEVYKMSAN 225 (227)
Q Consensus 157 ~~ELllTEll~~g~f~~L~p~eiaAllS~~V~~~r~--~~~~~l~~~l~~~~~~l~~ia~~i~~v~~~~~~ 225 (227)
+|||++|||||+|+|++|+|+|+||+|||||||+|+ ++.|.+++.|++++.+++++|++|++++.+||.
T Consensus 834 ~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~ 904 (997)
T 4a4z_A 834 GYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQI 904 (997)
T ss_dssp SCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999998 456888999999999999999999999999985
No 4
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=85.90 E-value=0.93 Score=38.43 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCH-HHHHHHhh
Q 027140 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH-HQVAALAS 184 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p-~eiaAllS 184 (227)
..+.+=+..|..||-||++|.+|.-||..+++-. +--+---++....|.-+++ --|||+||
T Consensus 18 ~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl-~P~lakmLl~a~~~~c~~~~l~iaA~Ls 79 (270)
T 3i4u_A 18 ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL-EPMLCKMLIMSVHLGCSEEMLTIVSMLS 79 (270)
T ss_dssp HHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS-CHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC-CHHHHHHHHHhhhcCCHHHHHHHHHHHC
Confidence 4566778899999999999999999999999986 5544444444445554433 23445555
No 5
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=80.91 E-value=2 Score=41.63 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCH-HHHHHHhh
Q 027140 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH-HQVAALAS 184 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p-~eiaAllS 184 (227)
...+.+-+..|..+|.||.++.+|.-||.++++.- +--+---++....|.-+++ -.|||+||
T Consensus 488 ~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~~~~l~i~a~ls 550 (773)
T 2xau_A 488 PETMMRALEELNYLACLDDEGNLTPLGRLASQFPL-DPMLAVMLIGSFEFQCSQEILTIVAMLS 550 (773)
T ss_dssp HHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcccCCCcChhhhhhccccC-CHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence 35677888999999999999999999999999986 5544444444444543332 34445554
No 6
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=74.44 E-value=5.3 Score=30.05 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhHcCCcc----C-C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHIN----A-D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid----~-~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+..-+.++-|.+.|||. + | -.+|.+|+-+.+--. -...-+.+.+|++++|+|+..+...+
T Consensus 60 ~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 60 QPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVD----GVISSTRKEILGGISSDEIAVLSGLI 130 (151)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHH----HHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 567788999999999995 2 2 268999997664321 12234456678999999998877655
No 7
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=72.57 E-value=6.8 Score=28.76 Aligned_cols=61 Identities=18% Similarity=0.041 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+-|||... -.+|.+|+-..+-.. -...-+...+|++++++|+..+...+
T Consensus 71 ~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 141 (148)
T 3jw4_A 71 GASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN----NIFLEVEESITKGLTKDEQKQLMSIL 141 (148)
T ss_dssp --CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH----HHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45667889999999999642 368999998765432 12344566789999999998887654
No 8
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=65.65 E-value=7.1 Score=28.43 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | -.+|.+|+-+.+-.. -...-++..+|++++++|+..+...+
T Consensus 65 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 135 (143)
T 3oop_A 65 TPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR----DIVEASCEKMFAGVTRTDLEQFTAIL 135 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4667789999999999963 1 268999998875432 12334556678899999998876654
No 9
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=64.80 E-value=14 Score=27.12 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... -.+|.+|+-+.+-. .+.+..-+|++++++|+..+...+
T Consensus 69 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~-------~~~~~~~~~~~l~~~e~~~l~~~l 136 (149)
T 4hbl_A 69 SNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAV-------FEAISSCLPQEFDTTEYDETKYVF 136 (149)
T ss_dssp HHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHH-------HHHHHTTSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHH-------HHHHHHHHHhhCCHHHHHHHHHHH
Confidence 46777899999999999642 26899999876432 122333378889998888776654
No 10
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=63.47 E-value=5.8 Score=28.96 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... -.+|.+|+-+.+-.. + ...-++..+|.+++++|+..+...+
T Consensus 65 ~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 135 (142)
T 3ech_A 65 KALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE--L--IMSRVHDELFAPLTPVEQATLVHLL 135 (142)
T ss_dssp -CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35667889999999999641 369999998775442 1 2333455567889999998887654
No 11
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=62.72 E-value=7.8 Score=28.51 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... -.+|.+|+-+.+-.. -...-++..+|++++++|+..+...+
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 138 (150)
T 3fm5_A 68 PSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK----ARVDAAHGRYFEGIPDTVVNQMRDTL 138 (150)
T ss_dssp HHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH----HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46677889999999999641 369999998876542 12334455667889999988876655
No 12
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=62.33 E-value=9.4 Score=27.87 Aligned_cols=61 Identities=7% Similarity=0.068 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... -.+|.+|+-+.+-.. + ...-+...+|.+++++|+..+...+
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 138 (148)
T 3nrv_A 68 KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS--D--FAIEREKQLLEEFEEAEKDQLFILL 138 (148)
T ss_dssp HHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH--H--HTHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH--H--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677889999999999642 378999998775432 1 1222445567889999988876554
No 13
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=61.51 E-value=8.2 Score=29.28 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... -.+|.+|+-+.+-.. -...-+++.+|.+++++|+..+...+
T Consensus 82 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 152 (166)
T 3deu_A 82 QPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME----EVIHKTRGEILAGISSEEIELLIKLI 152 (166)
T ss_dssp HHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH----HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46677899999999999632 258999998876442 12233455567789999888876655
No 14
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=61.08 E-value=21 Score=26.37 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhHcCCccC----C------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA----D------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~----~------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+..-+.++-|.+-|||.. + -.+|.+|+-+.+-- ...+ .+ +...|.+++++|+..+...+
T Consensus 65 ~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~--~~~~-~~--~~~~l~~l~~ee~~~l~~~L 134 (147)
T 4b8x_A 65 PTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA--TRDL-MA--MDFGLGAYDAEECGEIFAML 134 (147)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH--HHHH-HH--TGGGTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH--HHHH-HH--HHHHHhCCCHHHHHHHHHHH
Confidence 4677889999999999952 2 26899998776532 2222 22 24578999999998876654
No 15
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=60.89 E-value=8.9 Score=28.65 Aligned_cols=61 Identities=10% Similarity=0.069 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... -.+|.+|+-+.+-.. -...-++..+|.+++++|+..+...+
T Consensus 81 ~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~L 151 (161)
T 3e6m_A 81 QSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS----PLINDFHAELVGNVDPDKLQTCIEVL 151 (161)
T ss_dssp HHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH----HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46778899999999999631 268999998876432 12333455677889999988876654
No 16
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=60.62 E-value=8.6 Score=27.88 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | -.+|.+|+-...-.. + ...-+...+|++++++|+..+...+
T Consensus 57 ~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 127 (144)
T 1lj9_A 57 RTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV--R--ENQHSNQVALQGLSEVEISQLADYL 127 (144)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4667788999999999953 1 368999987765332 1 1223456678889998888776655
No 17
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=60.56 E-value=6.4 Score=28.48 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | -.+|.+|+-+.+-.. + ...-+...+|++++|+|+..+...+
T Consensus 61 ~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 131 (139)
T 3eco_A 61 GPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT--S--IFDEMEQTLVSQLSEEENEQMKANL 131 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4667789999999999963 1 268999998876432 1 2233456677889999998876654
No 18
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=59.96 E-value=11 Score=27.58 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhHcCCccC----C--------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 123 DELKNRSRVLKKLGHINA----D--------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~----~--------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
+...+.++-|.+-|||.. + -.+|.+|+-..+-.. -..+-++..+|++++++|+..+...+
T Consensus 66 ~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 137 (151)
T 3kp7_A 66 AAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK----AIMSHIASDMTSDFDSKEIEKVRQVL 137 (151)
T ss_dssp SHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH----HHHHHHHHHTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 566788999999999973 1 378999998765432 22344557788999999998887665
No 19
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=58.40 E-value=8 Score=28.67 Aligned_cols=60 Identities=8% Similarity=0.110 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 123 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
+...+.++-|.+.|||... ..+|.+|+-..+-.. + ...-....+|++++++|+..+...+
T Consensus 77 ~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 146 (160)
T 3boq_A 77 GNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS--E--AHNRILAELLRAVSDQDMVEASAAL 146 (160)
T ss_dssp SCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4556788999999999642 368999998765421 1 1223445578889999988776554
No 20
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=57.48 E-value=32 Score=21.46 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHhHcC
Q 027140 97 QRKAEVNHEIQQLKSKMRDSQIQK---FRDELKNRSRVLKKLG 136 (227)
Q Consensus 97 ~~~~~l~~~~~~l~~~l~~~~~l~---l~~e~~~~~~VL~~Lg 136 (227)
++-..|+.+-..|++++++ .+-. +-.|-.+|+.||++|+
T Consensus 10 ~QVe~Lk~ENshLrrEL~d-NS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 10 KQVEALKMENSNLRQELED-NSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHh-hHHHHHHHHhhhhhHHHHHHHHc
Confidence 3444566666677777766 3222 2356778999998875
No 21
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=56.76 E-value=8 Score=27.77 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... ..+|.+|+-..+-.. + ...-+...++++++++|+..+...+
T Consensus 66 ~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 136 (140)
T 2nnn_A 66 AATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGL--A--AAREINRQALAPLSLQEQETLRGLL 136 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46677889999999999641 368999987654321 1 1233455677889999998887654
No 22
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.71 E-value=10 Score=27.37 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... ..+|.+|+-..+-.. -..+-+...+|++++++|+..+...+
T Consensus 66 ~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 136 (146)
T 2fbh_A 66 GPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE----AIAASVRNDVLTGIDESEQALCQQVL 136 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45667789999999999631 367889987765431 22334556678889999888776554
No 23
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=54.23 E-value=6.8 Score=28.15 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 123 DELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
+...+.++-|.+.|||.. + ..+|.+|+-+.+-.. + ...-....+|++++++|+..+...+
T Consensus 62 ~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 131 (139)
T 3bja_A 62 SNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD--V--QYSDFLKENCGCFTKEEEGILEDLL 131 (139)
T ss_dssp TTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH--H--HHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455678899999999953 1 368999987765321 1 1223445567889999988776544
No 24
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=54.09 E-value=8.6 Score=28.77 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 123 DELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
+...+.++-|.+.|||.. | -.+|.+|+-+.+-.. + ...-+...+|.+++++|+..+...+
T Consensus 75 ~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 144 (162)
T 3k0l_A 75 QSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN--Q--VVQQLEAQMLQGVDINLAFLIRNNL 144 (162)
T ss_dssp GGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH--H--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 455688899999999963 1 369999998775432 1 2334556678999999998887665
No 25
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=53.66 E-value=13 Score=27.62 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. + ..+|.+|+-..+-.. -...-++..+|.+++++|+..+...+
T Consensus 80 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 150 (162)
T 3cjn_A 80 QSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW----PHMRASHDRMFQGITPQERQAFLATL 150 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4667789999999999963 1 368999987664432 12234456678889998888776544
No 26
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=53.52 E-value=13 Score=26.87 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | ..+|.+|+-..+-.. -..+-.+..+|++++++|+..+...+
T Consensus 64 ~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 134 (146)
T 2gxg_A 64 QSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI----EIYKKLANEVTGDLSEDEVILVLDKI 134 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH----HHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4667788999999999953 1 368999998765432 12233445577888998887776554
No 27
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=52.82 E-value=13 Score=28.85 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | -.+|.+|+-+..-.. . ...-++..+|++++++|+..+...+
T Consensus 71 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~ee~~~l~~~L 141 (189)
T 3nqo_A 71 KQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS--R--TGINFMADVFHEFTKDELETLWSLL 141 (189)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH--H--HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4667789999999999953 2 378999998775432 1 1122445578999999999877666
No 28
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=52.60 E-value=11 Score=27.71 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhHcCCccC------C------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA------D------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~------~------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. . ..+|.+|+-+.+-..... +. .-.+..+|.+++++|+..+...+
T Consensus 69 ~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~~-~~-~~~~~~~~~~l~~~e~~~l~~~l 143 (154)
T 2qww_A 69 GSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANA-FM-YKAMMKVFENLTENEIEELIRLN 143 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSCH-HH-HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhhH-HH-HHHHHHHHhcCCHHHHHHHHHHH
Confidence 4667789999999999975 1 268999987655433221 11 22334456788898888776554
No 29
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=51.18 E-value=11 Score=27.97 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | -.+|.+|+-+.+-.. =...-++..+|.+++++|+..+...+
T Consensus 78 ~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 148 (159)
T 3s2w_A 78 KGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMK----KIASEWGEILFSSFDDRQRREITNSL 148 (159)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHH----HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677889999999999953 1 268999998876432 12223444567788998888876554
No 30
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=50.84 E-value=11 Score=27.59 Aligned_cols=61 Identities=8% Similarity=-0.051 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... ..+|.+|+-..+-.. + ..+-+...+|.+++++|+..+...+
T Consensus 65 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 135 (155)
T 1s3j_A 65 PSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL--A--GRKAIMARYLSFLTEEEMLQAAHIT 135 (155)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH--H--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677889999999999531 368999987765432 1 1223445567888999888876655
No 31
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=50.51 E-value=6.7 Score=28.60 Aligned_cols=61 Identities=21% Similarity=0.135 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCC-CCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFN-DLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~-~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... ..+|.+|+-+.+-.. -..+-++...|. +++++|+..+...+
T Consensus 64 ~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~----~~~~~~~~~~~~~~l~~~e~~~l~~~l 135 (147)
T 2hr3_A 64 SSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR----AKREEWLVRAMHACLDESERALLAAAG 135 (147)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH----HHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 46677889999999999631 368999987765432 112223445565 78898888776654
No 32
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=50.31 E-value=16 Score=26.12 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhh-hhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAAC-LIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAc-eI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... ..+|.+|+-.. .-.. +. .+-+...++.++++++...+...+
T Consensus 59 ~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 130 (142)
T 3bdd_A 59 RAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPS--AH--HQAIKTSMNQILTVEESEQFLATL 130 (142)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSCC--HH--HHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHH--HH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46677889999999999531 36899998776 4332 22 123344466778888887776654
No 33
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=49.86 E-value=12 Score=27.59 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. + ..+|.+|+-..+-.. + ...-....+|++++++|+..+...+
T Consensus 72 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~ee~~~l~~~L 142 (154)
T 2eth_A 72 KSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL--S--NFESLLKSVLEKFSEEDFKVVSEGF 142 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4677789999999999953 1 368999987765431 1 1223445567788888887776544
No 34
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=49.26 E-value=19 Score=26.56 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... ..+|.+|+-...-.. + ...-+...++.+++++|+..+...+
T Consensus 77 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 147 (162)
T 2fa5_A 77 KVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA--P--LVNEMEQRLMSVFSAEEQQTLERLI 147 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46677889999999999642 368999987664332 1 1223445566778888887765544
No 35
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=48.88 E-value=16 Score=26.04 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhHcCCccC----C------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA----D------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~----~------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. . ..+|.+|+-..+-.. + ...-+...++++++++|+..+...+
T Consensus 57 ~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 127 (138)
T 3bpv_A 57 KGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL--K--VEERWEDLLFRDFTEDERKLFRKMC 127 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH--H--HHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4667788999999999964 1 368999987665322 1 1223455677888888887776554
No 36
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=47.35 E-value=16 Score=26.22 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | -.+|.+|+-..+-.. -..+-+...+|.+++++|+..+...+
T Consensus 64 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~----~~~~~~~~~~~~~l~~~e~~~l~~~l 134 (141)
T 3bro_A 64 SSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL----SYMDSDQSQMTSGLNKEEVVFLEKIL 134 (141)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH----HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4667788999999999953 1 258999987665432 12334556678889999988776543
No 37
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=46.66 E-value=13 Score=27.04 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. + ..+|.+|+-..+-.. + ...-....+|.+++++|+..+...+
T Consensus 70 ~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 140 (150)
T 2rdp_A 70 CSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI--E--KRQRDLANVLESFSDEEIVVFERCL 140 (150)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH--H--HHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH--H--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4667788999999999963 1 368999987664321 1 1122335566788888888776554
No 38
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=46.30 E-value=39 Score=20.92 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhCC
Q 027140 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGT 170 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g~ 170 (227)
-.+|...+.-|..+||.|.+ .-+.|=..+.+|-=-.+|.||+|.
T Consensus 8 e~~~~~~l~~L~~MGF~~~~-----~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINRE-----ANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHH-----HHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHcCCCCHH-----HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 36788999999999998754 334455566667668888888874
No 39
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=45.89 E-value=9.9 Score=27.69 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | -.+|.+|+-+.+-.. + ...-+.+.+|.+++++|+..+...+
T Consensus 59 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 129 (145)
T 3g3z_A 59 KQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT--E--SAQEFSDKVFATFGDKRTTRLFADL 129 (145)
T ss_dssp HHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH--H--HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH--H--HHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4677789999999999963 2 268999998764332 1 1123344456668888887776655
No 40
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=45.65 E-value=53 Score=22.04 Aligned_cols=61 Identities=13% Similarity=0.285 Sum_probs=40.5
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027140 55 VKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRD 115 (227)
Q Consensus 55 ~~~~ki~~~~~~~~~~~~~~l~~~l~~~p~~~c~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 115 (227)
|..++-.+..|..+..+.+.|...+...--....-.+.-+.-.++..|.++|..+-.....
T Consensus 9 I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 9 ISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445667889999999988888887764433331124444566777777777777666554
No 41
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.82 E-value=7.4 Score=28.06 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... ..+|.+|+-..+-.. +. ..-+...+|.+++++|+..+...+
T Consensus 64 ~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 134 (142)
T 2fbi_A 64 RPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMS--GD--MEKNYQRIQERFGEEKLAQLLELL 134 (142)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH--HH--HHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHH--HH--HHHHHHHHHhhCCHHHHHHHHHHH
Confidence 46777899999999999642 368999988765432 11 223344455678888887776554
No 42
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=43.48 E-value=13 Score=28.07 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | ..+|.+|+-+.+-.. +. ..-.+..+|.+++++|+..+...+
T Consensus 73 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~ee~~~l~~~L 143 (168)
T 2nyx_A 73 PSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVT--EH--RRTEIARIVEQMAPAERHGLVRAL 143 (168)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH--HH--HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH--HH--HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4667789999999999953 1 369999987764321 11 122335567789999987776555
No 43
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=43.26 E-value=34 Score=24.63 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | -.+|.+|+-..+-.. + ...++ .+. + +++|+|+..+...+
T Consensus 64 ~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~--~-~~~~~-~~~-~-~l~~~e~~~l~~~L 132 (140)
T 3hsr_A 64 SGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA--E-ISVKV-FNE-F-NISEREASDIINNL 132 (140)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH--H-HHHHH-HHT-S-CCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH--H-HHHHH-HHh-c-CCCHHHHHHHHHHH
Confidence 4667789999999999963 1 368999998765432 1 22222 232 4 89999998887654
No 44
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=43.15 E-value=10 Score=29.05 Aligned_cols=60 Identities=17% Similarity=0.045 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 123 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
+...+.++-|.+.|||... -.+|.+|+-..+-.. + ...-....+|++++++|+..+...+
T Consensus 101 ~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 170 (181)
T 2fbk_A 101 PSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL--P--AHLATTQRVLAPLSAQEQRTLEELA 170 (181)
T ss_dssp GGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4456788999999999642 368999998765432 1 1122334466778887777665443
No 45
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=42.66 E-value=12 Score=22.72 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhC
Q 027140 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNG 169 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g 169 (227)
..|...+.-|..+||-|.+ .-+.|=.-+.+|-=-.+|.||+|
T Consensus 5 ~~~~~~i~~L~~MGF~d~~-----~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFD-----RNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHH-----HHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcHH-----HHHHHHHHhCCCHHHHHHHHHcc
Confidence 4677888999999997643 22334445555666777888775
No 46
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=42.30 E-value=18 Score=26.26 Aligned_cols=61 Identities=10% Similarity=0.007 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... ..+|.+|+-..+-.. + ...-+...+|.+++++|+..+...+
T Consensus 68 ~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~l 138 (152)
T 3bj6_A 68 RQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIR--A--DEMAKLALFSEGFSSVELTAYHKVQ 138 (152)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHH--H--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46677899999999999531 268999987654321 1 1123445566778888887776554
No 47
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=41.49 E-value=22 Score=25.57 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+-|||.. | ..+|.+|+-...-.... .-...-....+|.+++++|+..+...+
T Consensus 65 ~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~~~-~~~~~~~~~~~~~~l~~~e~~~l~~~l 138 (146)
T 3tgn_A 65 QAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHHHH-HEHTLLTYEQVATQFTPNEQKVIQRFL 138 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHHHH-HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4667789999999999953 1 36888998877544200 022333456677889999988776544
No 48
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=41.44 E-value=12 Score=26.81 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||.. | ..+|.+|+-+.+-.. +. +..-+.+.++++++++|+..+...+
T Consensus 62 ~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~-~~~~~~~~~~~~l~~~e~~~l~~~l 133 (138)
T 1jgs_A 62 LGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH--QL-VGQDLHQELTKNLTADEVATLEYLL 133 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH--HH-HHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH--HH-HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4667788999999999963 1 368999988765322 11 1113334455677887777765543
No 49
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.71 E-value=16 Score=23.27 Aligned_cols=42 Identities=14% Similarity=-0.008 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhC
Q 027140 124 ELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNG 169 (227)
Q Consensus 124 e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g 169 (227)
.|...+.-|+++||.|.+..++ ++..-+..=+-.|++|+--+
T Consensus 8 ~~a~~L~~L~eMGF~D~~~N~~----aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLR----LLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp THHHHHHHHHHHTCCCHHHHHH----HHTTTTTCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHcCCCcHHHHHH----HHHHcCCCHHHHHHHHHhcc
Confidence 4677899999999999643222 23333332334556665443
No 50
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.24 E-value=19 Score=21.44 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHhhhcc
Q 027140 172 NDLDHHQVAALASCFI 187 (227)
Q Consensus 172 ~~L~p~eiaAllS~~V 187 (227)
.+++|+|+||+=|-+-
T Consensus 15 egfspeelaaleselq 30 (48)
T 1g6u_A 15 EGFSPEELAALESELQ 30 (48)
T ss_dssp TTCSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 4689999999977653
No 51
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation, viral protein; 1.60A {Rift valley fever virus} PDB: 3ouo_A 3lyf_A 4h5m_A 4h5o_A 4h5p_A 4h5q_A 4h6f_A 4h6g_A
Probab=37.16 E-value=25 Score=29.26 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHHH---HHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCC
Q 027140 62 DPEVVDLVNQIEELEH---KLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGH 137 (227)
Q Consensus 62 ~~~~~~~~~~~~~l~~---~l~~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgy 137 (227)
+.++.+.+-..+.|-. ...=+|-+.- ...+-+..+.+... ..+.+ .+. +=++|+.+|..+|-
T Consensus 158 ~~e~~~~i~dAh~Lf~~~FS~tINp~~Rg~s~~ev~~sf~~pm~---------Aa~~s----~f~-~~eqR~~~L~~~gi 223 (245)
T 3ov9_A 158 PGDYLRAILDAHSLYLLQFSRVINPNLRGRTKEEVAATFTQPMN---------AAVNS----NFI-SHEKRREFLKAFGL 223 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCHHHHHHHHHHHHH---------HHHTC----SSS-CHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHhhccCCHHHHHHHHHhHHH---------HHHHc----cCC-CHHHHHHHHHHhCc
Confidence 3455555444444432 2222466655 66665555544332 22222 122 22579999999999
Q ss_pred ccCCCccchhhHHhhhhc
Q 027140 138 INADGVVQLKGRAACLID 155 (227)
Q Consensus 138 id~~~~vt~KGrvAceI~ 155 (227)
||.|+.++--=..|++++
T Consensus 224 l~~n~~~~~~v~~aA~~~ 241 (245)
T 3ov9_A 224 VDSNGKPSAAVMAAAQAY 241 (245)
T ss_dssp BCTTSCBCHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHH
Confidence 999999887666666654
No 52
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=36.25 E-value=56 Score=23.35 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... -.+|.+|+-...-.. +.+ .+ +...+ +++++|+..+...+
T Consensus 68 ~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~~--~~~-~~-~~~~~--~l~~~e~~~l~~~l 136 (147)
T 1z91_A 68 SGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAV--DIP-GT-ILGLS--KQSGEDLKQLKSAL 136 (147)
T ss_dssp HHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTT--THH-HH-HHHHT--CCCTHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHHH--HHH-HH-HHHHc--CCCHHHHHHHHHHH
Confidence 46777889999999999642 367999998765442 222 22 22222 78888877765543
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.19 E-value=46 Score=23.58 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCC-ccchhh
Q 027140 94 RCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADG-VVQLKG 148 (227)
Q Consensus 94 ~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~-~vt~KG 148 (227)
....+...+..++..+..++.. +..+....-.|+..|.-+|++. +.-.-|
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~-----l~~~~~e~~~~~~eL~~l~~d~~vy~~iG 60 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQK-----VQLELTEAKKALDEIESLPDDAVVYKTVG 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCCcHhHHHhh
Confidence 3445666777777777777665 4566666777888888888653 444445
No 54
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=34.41 E-value=20 Score=22.99 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhC
Q 027140 122 RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNG 169 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g 169 (227)
-..|...+.-|+.+||-|.+ .-+.|=..+.+|-=-.+|.||+|
T Consensus 14 e~~~~~qi~~L~~MGF~d~~-----~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFD-----RNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHH-----HHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCcHH-----HHHHHHHHhCCCHHHHHHHHHhC
Confidence 46788899999999998743 22334445555666788888886
No 55
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=34.24 E-value=66 Score=23.22 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... -.+|.+|+-..+-.. + ...++.-. .+++++|+..+...+
T Consensus 75 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~-~~~~~~~~---~~l~~~e~~~l~~~l 143 (153)
T 2pex_A 75 SATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKAG--A-VPEQVFCA---SACSLDELRQLKQEL 143 (153)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGST--T-HHHHHHHH---HTCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHHH--H-HHHHHHhc---cCCCHHHHHHHHHHH
Confidence 46677889999999999641 367999987765443 2 22333322 578888887766543
No 56
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=34.11 E-value=13 Score=26.85 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
.+...+.++-|.+.|||... ..+|.+|+-...-.. +. ..-....+|.+++++|+..+...+
T Consensus 61 ~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~--~~--~~~~~~~~~~~l~~~e~~~l~~~l 131 (145)
T 2a61_A 61 KSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI--ER--RENFIEKITSDLGKEKSSKILDYL 131 (145)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH--HH--HHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHH--HH--HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46677889999999999642 368999987664321 11 112233345567777766665443
No 57
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=33.83 E-value=54 Score=23.51 Aligned_cols=70 Identities=21% Similarity=0.382 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCCCCCCccccCCCCChHHHHHHH---HHHHHHHHHHcCCCCCC-ChHHHHHH
Q 027140 26 RPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVN---QIEELEHKLFAHPLNKS-QDENQIRC 95 (227)
Q Consensus 26 ~~~~~~~~~~~~l~~~~~~~~~~~p~l~p~~~~ki~~~~~~~~~~---~~~~l~~~l~~~p~~~c-~~~~~~~~ 95 (227)
.+.+-++.+...+..+.+.-+.+.|+..|+..-...-+++.+.+. .+..++.++.+....+. .|...+.+
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~l 81 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWL 81 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 445567778888888877556778999998643223456666554 46777788887776654 55554443
No 58
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=32.46 E-value=8.8 Score=28.31 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhHcCCccCC----------CccchhhHHhhhh
Q 027140 122 RDELKNRSRVLKKLGHINAD----------GVVQLKGRAACLI 154 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI 154 (227)
.+...+.++-|.+.|||... ..+|.+|+-..+-
T Consensus 71 ~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 113 (155)
T 3cdh_A 71 QSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAES 113 (155)
T ss_dssp HHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHH
Confidence 46677889999999999631 3689999876643
No 59
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=32.39 E-value=7.6 Score=29.29 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhHcCCccCC----------CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 123 DELKNRSRVLKKLGHINAD----------GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~~----------~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
+...+.++-|.+.|||... -.+|.+|+-+.+-.. + ...-++..+|.+++++|+..+...+
T Consensus 77 ~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~--~--~~~~~~~~~~~~l~~~e~~~l~~~L 146 (168)
T 3u2r_A 77 PDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLE--E--PVRQCHERQLGHLAADELHELIRLM 146 (168)
T ss_dssp THHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHH--H--HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5667889999999999631 369999998876443 1 2233455567789999998887666
No 60
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=32.22 E-value=86 Score=19.36 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 027140 94 RCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVL 132 (227)
Q Consensus 94 ~~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL 132 (227)
++..+..+|+++|+.|.++-.+ +-.++...=.+.++-+
T Consensus 3 rQ~EEILRLErEIE~Lqrqke~-~~~~L~e~s~~eL~~~ 40 (51)
T 2lw9_A 3 KQVEEILRLEKEIEDLQRMKEQ-QELSLTEASLQKLQER 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHhHhHHHHHHHH
Confidence 3456778899999999988776 4334444333443333
No 61
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=31.28 E-value=44 Score=20.62 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhC
Q 027140 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNG 169 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g 169 (227)
.+|...+.-|..+||.|.+ .-+.|=..+.+|-=-.+|.||+|
T Consensus 10 ~~~~~~l~~L~~MGF~~~~-----~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNRE-----ANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHH-----HHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcCCCCHH-----HHHHHHHHhCCCHHHHHHHHHhC
Confidence 5677889999999998754 22334455555666777888775
No 62
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.03 E-value=22 Score=24.05 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhCC
Q 027140 123 DELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGT 170 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g~ 170 (227)
..|...+.-|+.+||-|.+ .-+.|=....+|-=..+|.||+|.
T Consensus 27 ~~ye~qi~qL~eMGF~dr~-----~~~~AL~~t~Gnve~Ave~L~~~~ 69 (74)
T 1vej_A 27 GRYQQELEELKALGFANRD-----ANLQALVATDGDIHAAIEMLLGAS 69 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHH-----HHHHHHHHTTSCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCCcHH-----HHHHHHHHhCCCHHHHHHHHHhCC
Confidence 5677889999999998743 223344555667778899999874
No 63
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=30.88 E-value=37 Score=23.86 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhHcCCccCC--------CccchhhHHhhhhcCCchHHHHHH-------HHhCCC--CCCCHHHHHHHhh
Q 027140 122 RDELKNRSRVLKKLGHINAD--------GVVQLKGRAACLIDTGDELLVTEL-------MFNGTF--NDLDHHQVAALAS 184 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~--------~~vt~KGrvAceI~s~~ELllTEl-------l~~g~f--~~L~p~eiaAllS 184 (227)
.+...+.++-|.+.|||... -.+|.+|+-..+-. .++ +.++ +...++ ++++++|+..+..
T Consensus 42 ~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~ 118 (123)
T 1okr_A 42 PKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS--KNF-INKVYKGGFNSLVLNFVEKEDLSQDEIEELRN 118 (123)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH--HHH-HHHHSTTCHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHH--HHH-HHHHHCCCHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 46677889999999999642 14677887654321 111 1111 111334 7899999998876
Q ss_pred hc
Q 027140 185 CF 186 (227)
Q Consensus 185 ~~ 186 (227)
.+
T Consensus 119 ~L 120 (123)
T 1okr_A 119 IL 120 (123)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 64
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.82 E-value=43 Score=23.36 Aligned_cols=49 Identities=12% Similarity=0.272 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHcCCccCCC-ccchhh
Q 027140 95 CFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADG-VVQLKG 148 (227)
Q Consensus 95 ~~~~~~~l~~~~~~l~~~l~~~~~l~l~~e~~~~~~VL~~Lgyid~~~-~vt~KG 148 (227)
...+...++.++..+..++.. +..+....-.|+..|.-+|++. +.-.-|
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~-----l~~~~~e~~~~~~EL~~l~~d~~vy~~iG 55 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQT-----VEMQINETQKALEELSRAADDAEVYKSSG 55 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHSCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCCchHHHHHh
Confidence 345566677777777776665 4566666777888888887653 444445
No 65
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=29.65 E-value=26 Score=25.22 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.3
Q ss_pred CCCCCCCHHHHHHHhhhccc
Q 027140 169 GTFNDLDHHQVAALASCFIP 188 (227)
Q Consensus 169 g~f~~L~p~eiaAllS~~V~ 188 (227)
|-|.||+++|+.+.+.++-.
T Consensus 71 N~FaDLT~eEF~~~~lg~~~ 90 (106)
T 3f75_P 71 NHFGDLSRDEFRRKYLGFKK 90 (106)
T ss_dssp CTTTTCCHHHHHHHSCCBCC
T ss_pred cccccCCHHHHHHHHcCCCC
Confidence 56999999999998766544
No 66
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=28.89 E-value=56 Score=23.25 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhHcCCccC-----C-----CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhhhc
Q 027140 123 DELKNRSRVLKKLGHINA-----D-----GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCF 186 (227)
Q Consensus 123 ~e~~~~~~VL~~Lgyid~-----~-----~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS~~ 186 (227)
+...+.++-|.+.|||.. + ..+|.+|+-+.+-.. +. ..+ +... + +++++|+..+...+
T Consensus 66 ~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~--~~-~~~-~~~~-~-~l~~~e~~~l~~~l 133 (142)
T 2bv6_A 66 GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS--NA-SDK-VASA-S-SLSQDEVKELNRLL 133 (142)
T ss_dssp TTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT--TH-HHH-HHHH-T-TCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH--HH-HHH-HHHH-h-CCCHHHHHHHHHHH
Confidence 455678899999999953 1 267999987665443 11 222 2222 3 89999998877654
No 67
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=27.82 E-value=51 Score=23.60 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhHcCCccCC---CccchhhHHhhhhcCCchHHHHHHHHhCCCCCCCHHHHHHHhh
Q 027140 122 RDELKNRSRVLKKLGHINAD---GVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS 184 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~---~~vt~KGrvAceI~s~~ELllTEll~~g~f~~L~p~eiaAllS 184 (227)
.+...+.++-|++.|||... ..+|.+|+-...-.....-.+...+.+ .+++++++..+..
T Consensus 45 ~~tv~~~l~~Le~~Gli~r~~~~~~Lt~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 107 (139)
T 2x4h_A 45 PSSVFEEVSHLEEKGLVKKKEDGVWITNNGTRSINYLIKAHRVIEILLVN---IGIDKQTACEYSK 107 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHHHHHHHHHHHH---HTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCEEecCCeEEEChhHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 46677888999999999753 478999987653222111122333333 3577777665433
No 68
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=24.84 E-value=1.1e+02 Score=28.62 Aligned_cols=61 Identities=16% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhHcCCccCC--CccchhhHHhhhhcCCchHHHHHHHHhCCCCC-CCHHHHHHHhh
Q 027140 122 RDELKNRSRVLKKLGHINAD--GVVQLKGRAACLIDTGDELLVTELMFNGTFND-LDHHQVAALAS 184 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~~--~~vt~KGrvAceI~s~~ELllTEll~~g~f~~-L~p~eiaAllS 184 (227)
...+.+-++.|.++|+|+.+ +.+|.-||.++..+- + --.+.++..+.=.. .+..++-.++|
T Consensus 452 ~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~i~ 515 (702)
T 2p6r_A 452 SYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYI-D-PLTGFIFHDVLSRMELSDIGALHLIC 515 (702)
T ss_dssp HHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTC-C-HHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhC-C-HHHHHHHHHHhhcccCCHHHHHHHhh
Confidence 34678889999999999876 789999999999886 3 23345555544221 34445555444
No 69
>4h5l_A Nucleoprotein; nucleocapsid protein, N protein, RNA binding, RNP, viral protein; 2.75A {Toscana virus}
Probab=24.56 E-value=59 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.3
Q ss_pred HHHHHHhHcCCccCCCccchhhHHhhhhc
Q 027140 127 NRSRVLKKLGHINADGVVQLKGRAACLID 155 (227)
Q Consensus 127 ~~~~VL~~Lgyid~~~~vt~KGrvAceI~ 155 (227)
+|+.+|+.+|-||+++.++--=..|++++
T Consensus 219 qR~~~L~~~gi~~~n~~~~~~v~~AA~~~ 247 (253)
T 4h5l_A 219 DKKKLLIAVGIIDEDLVLASAVVRSAEKY 247 (253)
T ss_dssp HHHHHHHHTTSBCTTCCBCHHHHHHHHHT
T ss_pred HHHHHHHHcCccCCCCCCcHHHHHHHHHH
Confidence 89999999999999988876666666654
No 70
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.49 E-value=2e+02 Score=19.98 Aligned_cols=7 Identities=0% Similarity=-0.301 Sum_probs=5.4
Q ss_pred cCCCCCC
Q 027140 81 AHPLNKS 87 (227)
Q Consensus 81 ~~p~~~c 87 (227)
.-||..|
T Consensus 47 g~~CPvC 53 (112)
T 1l8d_A 47 KGKCPVC 53 (112)
T ss_dssp SEECTTT
T ss_pred CCCCCCC
Confidence 3489999
No 71
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.02 E-value=1.7e+02 Score=20.31 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027140 60 IEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRD 115 (227)
Q Consensus 60 i~~~~~~~~~~~~~~l~~~l~~~p~~~c~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 115 (227)
+...++..+-+....+.+...+..|..-...+....-.+...|..+++.|+.+.+.
T Consensus 18 ls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 18 FTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888899988888775322233333344555556666666665554
No 72
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.13 E-value=91 Score=19.37 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=29.1
Q ss_pred HHHHHHHHHhHcCCccCCCccchhhHHhhhhcCCchHHHHHHHHhC
Q 027140 124 ELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNG 169 (227)
Q Consensus 124 e~~~~~~VL~~Lgyid~~~~vt~KGrvAceI~s~~ELllTEll~~g 169 (227)
.|...+.-|+.+||-|.+ .-+.|=..+.+|-=..+|.||++
T Consensus 8 ~~~~~l~~L~~MGF~d~~-----~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNRE-----ANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp SSHHHHHHHHHHTCCCHH-----HHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHH-----HHHHHHHHcCCCHHHHHHHHHhC
Confidence 466778899999999843 22345555666766788888876
No 73
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=20.66 E-value=53 Score=22.68 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhHcCCccC---CCccchhhHHhhhh
Q 027140 122 RDELKNRSRVLKKLGHINA---DGVVQLKGRAACLI 154 (227)
Q Consensus 122 ~~e~~~~~~VL~~Lgyid~---~~~vt~KGrvAceI 154 (227)
...+...++.|++.|||+. ...+|.||+-+-+.
T Consensus 34 ~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l~~ 69 (95)
T 1r7j_A 34 YALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLED 69 (95)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEECCeeEEChhHHHHHHH
Confidence 5788999999999999964 35899999966543
Done!