Query 027142
Match_columns 227
No_of_seqs 174 out of 1127
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:34:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02685 iron superoxide dismu 100.0 1.2E-55 2.7E-60 398.2 18.1 202 15-223 15-218 (299)
2 COG0605 SodA Superoxide dismut 100.0 3.1E-54 6.6E-59 370.9 16.5 157 47-223 1-160 (204)
3 PLN02184 superoxide dismutase 100.0 2.8E-54 6E-59 374.1 16.1 160 45-223 6-165 (212)
4 PRK10543 superoxide dismutase; 100.0 1.2E-53 2.7E-58 365.2 15.9 152 48-222 1-152 (193)
5 PRK10925 superoxide dismutase; 100.0 6.5E-52 1.4E-56 357.8 15.4 150 48-218 1-153 (206)
6 PLN02622 iron superoxide dismu 100.0 2.2E-51 4.7E-56 365.3 16.9 168 39-222 37-204 (261)
7 PTZ00078 Superoxide dismutase 100.0 1.2E-49 2.6E-54 340.7 15.9 147 53-222 1-148 (193)
8 PLN02471 superoxide dismutase 100.0 3E-48 6.4E-53 340.1 15.6 159 39-219 20-182 (231)
9 KOG0876 Manganese superoxide d 100.0 2.3E-47 5E-52 331.9 14.4 158 45-219 23-181 (234)
10 PF00081 Sod_Fe_N: Iron/mangan 100.0 7.3E-32 1.6E-36 202.1 4.5 82 49-135 1-82 (82)
11 PF02777 Sod_Fe_C: Iron/mangan 99.8 8.9E-21 1.9E-25 147.6 7.4 68 140-223 1-68 (106)
12 PF13348 Y_phosphatase3C: Tyro 50.2 18 0.0004 25.2 2.8 19 145-163 33-51 (68)
13 PF05416 Peptidase_C37: Southa 39.5 20 0.00044 35.0 2.1 12 170-181 376-387 (535)
14 COG3207 DIT1 Pyoverdine/dityro 39.5 7.5 0.00016 35.8 -0.7 65 152-216 214-281 (330)
15 COG4700 Uncharacterized protei 35.6 31 0.00067 30.7 2.5 23 72-94 227-249 (251)
16 TIGR02118 conserved hypothetic 30.0 47 0.001 24.8 2.4 22 64-86 10-31 (100)
17 PF07110 EthD: EthD domain; I 29.6 28 0.0006 25.0 1.0 23 64-86 1-23 (95)
18 KOG3935 Predicted glycerate ki 27.9 24 0.00051 33.6 0.5 24 8-31 331-354 (446)
19 PF09151 DUF1936: Domain of un 26.2 58 0.0013 20.4 1.9 24 173-196 8-31 (36)
20 PF01833 TIG: IPT/TIG domain; 25.3 43 0.00094 23.2 1.4 46 11-56 16-61 (85)
21 KOG0394 Ras-related GTPase [Ge 25.2 40 0.00086 29.6 1.4 21 150-170 93-113 (210)
22 PF12826 HHH_2: Helix-hairpin- 24.7 49 0.0011 23.1 1.5 32 144-175 13-44 (64)
23 PF05161 MOFRL: MOFRL family; 23.8 14 0.0003 29.2 -1.6 26 9-34 7-32 (107)
24 cd01935 Ntn_CGH_like Choloylgl 22.9 3E+02 0.0064 23.2 6.4 54 139-192 95-155 (229)
25 PF08025 Antimicrobial_3: Spid 22.0 1.2E+02 0.0025 19.3 2.6 25 144-168 7-31 (37)
26 COG5153 CVT17 Putative lipase 21.3 42 0.0009 31.6 0.8 13 13-25 277-289 (425)
27 KOG4540 Putative lipase essent 21.3 42 0.0009 31.6 0.8 13 13-25 277-289 (425)
No 1
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=1.2e-55 Score=398.15 Aligned_cols=202 Identities=79% Similarity=1.327 Sum_probs=177.2
Q ss_pred eeecCCCCCCCCccccccccccc-cccccCCc-eecceEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027142 15 WLTGQGLGGRSTRLPFHWRNKKM-EQRKTGGR-ISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG 92 (227)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~Lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~ 92 (227)
.|..||- |.| .||..|.+ |..+..+. +.++|+||+|||+|++|||+||++||++||+|||++||++||+++++
T Consensus 15 ~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~al~~ 89 (299)
T PLN02685 15 LLPSQGP---SRR--MQWKGKRRTCTRKAVSGVITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVG 89 (299)
T ss_pred cCcccCC---ccc--chhhhhhhhhhhhccccccccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566654 444 58988755 44444333 57789999999999999999999999999999999999999999999
Q ss_pred ccccCCCChHHHHHHhhcCCCcchhhcchhhhhhhhhhhcccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 027142 93 TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQF 172 (227)
Q Consensus 93 t~~~e~~sl~~ii~~~~~~~~~~~ifN~ag~~~NH~fFw~~L~P~~~~~P~g~L~~~I~~sFGS~d~Fk~~F~~aA~~~f 172 (227)
+++ +++++++||.....++....+||+|||+|||+|||++|+|.++++|++.|.++|+++|||||+||++|.++|.++|
T Consensus 90 t~l-~~~sl~eii~~~~~~~~~~~ifNnaggh~NH~fFWe~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~f 168 (299)
T PLN02685 90 TEL-DGMSLEDVVLITYNKGDMLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQF 168 (299)
T ss_pred chh-hcCCHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Confidence 888 8899999987766665556799999999999999999999888899999999999999999999999999999999
Q ss_pred cccEEEEEEecCCcccccccCCCCCCCCCCceEEEecCCCCCCCcCCcccc
Q 027142 173 GSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSVT 223 (227)
Q Consensus 173 GSGWvWLV~d~~~~L~i~~~~n~~~~~~~~~L~I~~T~N~~~Pl~~~~~~~ 223 (227)
||||||||+++ ++|.|.+|.||.+...+++|.|++|+||++|++.+..|-
T Consensus 169 GSGWvWLV~~~-~~~~~~~~~np~~~~~~~~L~i~~t~n~d~pl~~~~~PL 218 (299)
T PLN02685 169 GSGWAWLAYKA-NRLDVGNAVNPCPSEEDKKLVVVKSPNAVNPLVWDYSPL 218 (299)
T ss_pred CCeEEEEEEcc-ccccccccccccccccCCceeEEeccCCCCCccCCCEeE
Confidence 99999999974 689999999998766678999999999999999887663
No 2
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-54 Score=370.85 Aligned_cols=157 Identities=50% Similarity=0.920 Sum_probs=144.5
Q ss_pred ecceEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc--ccCCCChHHHHHHhhcCCCcchhhcchhhh
Q 027142 47 SAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTE--LGDGKSLEDVVIASYNKGDLLPAFNNAAQA 124 (227)
Q Consensus 47 ~~~~~Lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~t~--~~e~~sl~~ii~~~~~~~~~~~ifN~ag~~ 124 (227)
+|.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ + +++++++++......+. .++||+||+
T Consensus 1 ~~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~-~~~~~e~~~~~~~~~~~--~~~nn~~gh 77 (204)
T COG0605 1 RMAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEEL-EDLSLEEIIKKLAGLPA--ALFNNAGGH 77 (204)
T ss_pred CCCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccCCHHHHHHHHhcccH--HHHhcchhh
Confidence 478999999999999999999999999999999999999999999954 6 88999999887654332 589999999
Q ss_pred hhhhhhhcccCCC-CCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCcccEEEEEEecCCcccccccCCCCCCCCCCc
Q 027142 125 WNHDFFWESMKPG-GGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKS 203 (227)
Q Consensus 125 ~NH~fFw~~L~P~-~~~~P~g~L~~~I~~sFGS~d~Fk~~F~~aA~~~fGSGWvWLV~d~~~~L~i~~~~n~~~~~~~~~ 203 (227)
+||+|||++|+|+ ++++|+|+|+++|+++|||||+||++|.++|.++|||||+|||+|+ .++
T Consensus 78 ~NH~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~-----------------~~k 140 (204)
T COG0605 78 WNHSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDP-----------------DGK 140 (204)
T ss_pred hhHHHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECC-----------------CCc
Confidence 9999999999996 7889999999999999999999999999999999999999999983 458
Q ss_pred eEEEecCCCCCCCcCCcccc
Q 027142 204 LLVVKTPNAVNPLVWDYSVT 223 (227)
Q Consensus 204 L~I~~T~N~~~Pl~~~~~~~ 223 (227)
|.|++|+|||+|++++..|-
T Consensus 141 L~i~~t~n~~~p~~~~~~Pi 160 (204)
T COG0605 141 LEIVSTYNQDTPLMWGSVPL 160 (204)
T ss_pred EEEEeccCCCCcccCCCCce
Confidence 99999999999999987774
No 3
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=2.8e-54 Score=374.10 Aligned_cols=160 Identities=74% Similarity=1.284 Sum_probs=147.6
Q ss_pred ceecceEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChHHHHHHhhcCCCcchhhcchhhh
Q 027142 45 RISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQA 124 (227)
Q Consensus 45 ~~~~~~~Lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~t~~~e~~sl~~ii~~~~~~~~~~~ifN~ag~~ 124 (227)
.+.++|+||+|||+|++|||+||++||++||+|||++||++||++++++++ +++++++||.....++....+||+|||+
T Consensus 6 ~~~~~~~lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~~-~~~~l~~ii~~~~~~~~~~~ifnnagg~ 84 (212)
T PLN02184 6 AVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQA 84 (212)
T ss_pred hhccceeCCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCchh-hcCCHHHHHHHhcccchHHHHHHhHHHH
Confidence 457889999999999999999999999999999999999999999999888 8899999987666555555689999999
Q ss_pred hhhhhhhcccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCcccEEEEEEecCCcccccccCCCCCCCCCCce
Q 027142 125 WNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSL 204 (227)
Q Consensus 125 ~NH~fFw~~L~P~~~~~P~g~L~~~I~~sFGS~d~Fk~~F~~aA~~~fGSGWvWLV~d~~~~L~i~~~~n~~~~~~~~~L 204 (227)
+||+|||++|+|.++++|++.|+++|+++|||+|+||++|.++|.++|||||+|||+| .++|
T Consensus 85 ~NH~~fw~~L~p~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~------------------~~~L 146 (212)
T PLN02184 85 WNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYS------------------NEKL 146 (212)
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEE------------------CCEE
Confidence 9999999999998777899999999999999999999999999999999999999997 2679
Q ss_pred EEEecCCCCCCCcCCcccc
Q 027142 205 LVVKTPNAVNPLVWDYSVT 223 (227)
Q Consensus 205 ~I~~T~N~~~Pl~~~~~~~ 223 (227)
.|++|+|||+|++.+..|-
T Consensus 147 ~i~~t~n~~~P~~~~~~Pl 165 (212)
T PLN02184 147 KVVKTPNAVNPLVLGSFPL 165 (212)
T ss_pred EEEeecCCCCCccCCCeeE
Confidence 9999999999999987663
No 4
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=1.2e-53 Score=365.24 Aligned_cols=152 Identities=49% Similarity=0.901 Sum_probs=140.8
Q ss_pred cceEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChHHHHHHhhcCCCcchhhcchhhhhhh
Q 027142 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNH 127 (227)
Q Consensus 48 ~~~~Lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~t~~~e~~sl~~ii~~~~~~~~~~~ifN~ag~~~NH 127 (227)
|+|+||+|||+|++|||+||++||++||+|||++||++||++++++++ +++++++|+... ...+||+|||++||
T Consensus 1 m~~~lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~~~-~~~~l~~ii~~~-----~~~ifnna~g~~NH 74 (193)
T PRK10543 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRSS-----EGGVFNNAAQVWNH 74 (193)
T ss_pred CCCcCCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcchh-hcCCHHHHHHhh-----HHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999888 888999988642 13599999999999
Q ss_pred hhhhcccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCcccEEEEEEecCCcccccccCCCCCCCCCCceEEE
Q 027142 128 DFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVV 207 (227)
Q Consensus 128 ~fFw~~L~P~~~~~P~g~L~~~I~~sFGS~d~Fk~~F~~aA~~~fGSGWvWLV~d~~~~L~i~~~~n~~~~~~~~~L~I~ 207 (227)
+|||++|+|.++++|+++|+++|+++|||+|+||++|+++|.++|||||||||+|+ +++|.|+
T Consensus 75 ~lfw~~L~p~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~-----------------~~~L~I~ 137 (193)
T PRK10543 75 TFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNA-----------------DGKLAIV 137 (193)
T ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-----------------CCCEEEE
Confidence 99999999987778999999999999999999999999999999999999999872 4789999
Q ss_pred ecCCCCCCCcCCccc
Q 027142 208 KTPNAVNPLVWDYSV 222 (227)
Q Consensus 208 ~T~N~~~Pl~~~~~~ 222 (227)
+|+|||+|++.+..|
T Consensus 138 ~t~n~~~p~~~~~~P 152 (193)
T PRK10543 138 STSNAGTPLTTDATP 152 (193)
T ss_pred eccCCCCCcCCCCEe
Confidence 999999999987766
No 5
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=6.5e-52 Score=357.84 Aligned_cols=150 Identities=42% Similarity=0.697 Sum_probs=135.7
Q ss_pred cceEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcc-cccCCCChHHHHHHhhcCCC--cchhhcchhhh
Q 027142 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGT-ELGDGKSLEDVVIASYNKGD--LLPAFNNAAQA 124 (227)
Q Consensus 48 ~~~~Lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~t-~~~e~~sl~~ii~~~~~~~~--~~~ifN~ag~~ 124 (227)
|+|+||+|||+|++|||+||++||++||+|||++||++||++++++ ++ +++++++||......++ +..+||||||+
T Consensus 1 m~~~lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~i~nna~g~ 79 (206)
T PRK10925 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEF-ANLPVEELITKLDQLPADKKTVLRNNAGGH 79 (206)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccHHh-hcCCHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 5699999999999999999999999999999999999999999986 46 78899999876543332 34589999999
Q ss_pred hhhhhhhcccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCcccEEEEEEecCCcccccccCCCCCCCCCCce
Q 027142 125 WNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSL 204 (227)
Q Consensus 125 ~NH~fFw~~L~P~~~~~P~g~L~~~I~~sFGS~d~Fk~~F~~aA~~~fGSGWvWLV~d~~~~L~i~~~~n~~~~~~~~~L 204 (227)
+||+|||++|+|+ +.|+++|.++|+++|||||+||++|.++|.++|||||||||++ .++|
T Consensus 80 ~NH~~fw~~L~P~--~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~------------------~~~L 139 (206)
T PRK10925 80 ANHSLFWKGLKKG--TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK------------------GDKL 139 (206)
T ss_pred HHHHHHHhccCCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEe------------------CCEE
Confidence 9999999999993 4799999999999999999999999999999999999999997 3689
Q ss_pred EEEecCCCCCCCcC
Q 027142 205 LVVKTPNAVNPLVW 218 (227)
Q Consensus 205 ~I~~T~N~~~Pl~~ 218 (227)
.|++|+|||+|++.
T Consensus 140 ~i~~t~N~~~p~~~ 153 (206)
T PRK10925 140 AVVSTANQDSPLMG 153 (206)
T ss_pred EEEeccCCCCCccc
Confidence 99999999999985
No 6
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=2.2e-51 Score=365.34 Aligned_cols=168 Identities=55% Similarity=1.023 Sum_probs=149.8
Q ss_pred ccccCCceecceEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChHHHHHHhhcCCCcchhh
Q 027142 39 QRKTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF 118 (227)
Q Consensus 39 ~~~~~~~~~~~~~Lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~t~~~e~~sl~~ii~~~~~~~~~~~if 118 (227)
..++...+.+.|+||+|||+|++|||+||++||++||+|||++||++||+++++++..+..++++||.....++....+|
T Consensus 37 ~~~~~~~~~~~~~L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~vf 116 (261)
T PLN02622 37 SLQRASKVVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVTYNNGNPLPEF 116 (261)
T ss_pred cccccccccccccCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcCCHHHHHHHhhccchhHHHH
Confidence 44444567788999999999999999999999999999999999999999998864226789999987655555556799
Q ss_pred cchhhhhhhhhhhcccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCcccEEEEEEecCCcccccccCCCCCC
Q 027142 119 NNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPS 198 (227)
Q Consensus 119 N~ag~~~NH~fFw~~L~P~~~~~P~g~L~~~I~~sFGS~d~Fk~~F~~aA~~~fGSGWvWLV~d~~~~L~i~~~~n~~~~ 198 (227)
|+|||++||+|||++|+|++++.|++.|.++|+++|||+|+||++|+++|.++|||||||||+|+
T Consensus 117 nna~g~~NH~~Fw~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d~--------------- 181 (261)
T PLN02622 117 NNAAQVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKR--------------- 181 (261)
T ss_pred HHHHhHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEeC---------------
Confidence 99999999999999999987778999999999999999999999999999999999999999984
Q ss_pred CCCCceEEEecCCCCCCCcCCccc
Q 027142 199 EKDKSLLVVKTPNAVNPLVWDYSV 222 (227)
Q Consensus 199 ~~~~~L~I~~T~N~~~Pl~~~~~~ 222 (227)
.+++|.|++|+|||+|++.+..|
T Consensus 182 -~~g~L~I~~t~N~~~Pl~~~~~P 204 (261)
T PLN02622 182 -EERRLEVVKTSNAINPLVWDDIP 204 (261)
T ss_pred -CCCeEEEEecCCCCCCccCCCEe
Confidence 35789999999999999988665
No 7
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=1.2e-49 Score=340.66 Aligned_cols=147 Identities=47% Similarity=0.871 Sum_probs=134.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChHHHHHHhhcCCCcchhhcchhhhhhhhhhhc
Q 027142 53 KPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWE 132 (227)
Q Consensus 53 p~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~t~~~e~~sl~~ii~~~~~~~~~~~ifN~ag~~~NH~fFw~ 132 (227)
|+|||+|++|||+||++||++||+|||++||++||++++++++ +++++++|+.... ..+||+|||++||+|||+
T Consensus 1 p~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~~-~~~~~~~ii~~~~-----~~~~n~a~g~~NH~lfw~ 74 (193)
T PTZ00078 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTPL-ENKTLEELIKEYS-----GAVFNNAAQIWNHNFYWL 74 (193)
T ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999887 7899999886432 368999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCcccEEEEEEecCCcccccccCCCCCCCCCCceEEEecCCC
Q 027142 133 SMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNA 212 (227)
Q Consensus 133 ~L~P~~~~~P~g~L~~~I~~sFGS~d~Fk~~F~~aA~~~fGSGWvWLV~d~~~~L~i~~~~n~~~~~~~~~L~I~~T~N~ 212 (227)
+|+|.++++|+++|+++|+++|||+|+||++|.++|.++|||||||||++ .+++|.|++|+|+
T Consensus 75 ~L~p~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~-----------------~~~~L~i~~t~n~ 137 (193)
T PTZ00078 75 SMGPNGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLK-----------------NDGKLEIVQTHDA 137 (193)
T ss_pred hcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEC-----------------CCCcEEEEeccCC
Confidence 99998777899999999999999999999999999999999999999975 3578999999999
Q ss_pred CCCCcCC-ccc
Q 027142 213 VNPLVWD-YSV 222 (227)
Q Consensus 213 ~~Pl~~~-~~~ 222 (227)
|+|++.+ ..|
T Consensus 138 ~~p~~~~~~~P 148 (193)
T PTZ00078 138 GNPIKDNTGKP 148 (193)
T ss_pred CCCccCCCCce
Confidence 9999864 444
No 8
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=3e-48 Score=340.14 Aligned_cols=159 Identities=33% Similarity=0.503 Sum_probs=134.6
Q ss_pred ccccCCceecceEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCCCChHHHHHHhhcCCCcchh
Q 027142 39 QRKTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTEL-GDGKSLEDVVIASYNKGDLLPA 117 (227)
Q Consensus 39 ~~~~~~~~~~~~~Lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~t~~-~e~~sl~~ii~~~~~~~~~~~i 117 (227)
++.++....++|+||+|||+|++|||+||++||++||+|||++||++||+++++.+. .+..++.+++.. ...+
T Consensus 20 ~~~~~~~~~~~~~lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~~~~~~i~~~------~~~~ 93 (231)
T PLN02471 20 SRLLSFRGLQTFTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKL------QSAI 93 (231)
T ss_pred hhhhhhcccccccCCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhcccCCHHHHHhh------hhhh
Confidence 444455556789999999999999999999999999999999999999999987532 234566665432 1247
Q ss_pred hcchhhhhhhhhhhcccCCC--CCCC-CcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCcccEEEEEEecCCcccccccCC
Q 027142 118 FNNAAQAWNHDFFWESMKPG--GGGK-PSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVN 194 (227)
Q Consensus 118 fN~ag~~~NH~fFw~~L~P~--~~~~-P~g~L~~~I~~sFGS~d~Fk~~F~~aA~~~fGSGWvWLV~d~~~~L~i~~~~n 194 (227)
+||+||++||+|||++|+|. +++. |+++|.++|+++|||||+||++|.++|.++|||||||||+|+
T Consensus 94 ~~n~gg~~NH~~fw~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d~----------- 162 (231)
T PLN02471 94 KFNGGGHVNHSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLDK----------- 162 (231)
T ss_pred hhHHHHHHhHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEeC-----------
Confidence 88899999999999999984 3334 689999999999999999999999999999999999999983
Q ss_pred CCCCCCCCceEEEecCCCCCCCcCC
Q 027142 195 PLPSEKDKSLLVVKTPNAVNPLVWD 219 (227)
Q Consensus 195 ~~~~~~~~~L~I~~T~N~~~Pl~~~ 219 (227)
.+++|.|++|+|||+|++.+
T Consensus 163 -----~~~~L~i~~t~n~d~~~~~~ 182 (231)
T PLN02471 163 -----ELKKLVVETTANQDPLVTKG 182 (231)
T ss_pred -----CCCeEEEEeecCCCCCcccC
Confidence 35789999999999887654
No 9
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-47 Score=331.93 Aligned_cols=158 Identities=46% Similarity=0.854 Sum_probs=143.2
Q ss_pred ceecceEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChHHHHHHhhcCCCcchhhcchhhh
Q 027142 45 RISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQA 124 (227)
Q Consensus 45 ~~~~~~~Lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~t~~~e~~sl~~ii~~~~~~~~~~~ifN~ag~~ 124 (227)
.++++++||+|||+|++|||.||+++|++||+|||++||++||+++++++...++...+++. ++..++....||+||++
T Consensus 23 ~v~~~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~-t~~~~~~a~~Fn~~~~~ 101 (234)
T KOG0876|consen 23 AVRQKATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSL-TAIAPQPAPKFNGAGHI 101 (234)
T ss_pred eeeeeecCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhH-hccChhhhhhcCCcccc
Confidence 46788999999999999999999999999999999999999999999976425666666555 56677778899999999
Q ss_pred hhhhhhhcccCCCCCCCCcHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCcccEEEEEEecCCcccccccCCCCCCCCCCc
Q 027142 125 WNHDFFWESMKPGGGGKPSGE-LLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKS 203 (227)
Q Consensus 125 ~NH~fFw~~L~P~~~~~P~g~-L~~~I~~sFGS~d~Fk~~F~~aA~~~fGSGWvWLV~d~~~~L~i~~~~n~~~~~~~~~ 203 (227)
+||+|||++|.|++++.|.+. |.++|+++|||+|+|+++|.+++.++|||||+|||+++ ..++
T Consensus 102 ~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~----------------~~~k 165 (234)
T KOG0876|consen 102 YNHSFFWENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNK----------------ELKK 165 (234)
T ss_pred ccchhhhhhccCCCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEcC----------------CCCe
Confidence 999999999999888888776 99999999999999999999999999999999999984 3479
Q ss_pred eEEEecCCCCCCCcCC
Q 027142 204 LLVVKTPNAVNPLVWD 219 (227)
Q Consensus 204 L~I~~T~N~~~Pl~~~ 219 (227)
|.|++|+||++|+.++
T Consensus 166 L~i~~T~Na~~P~~~~ 181 (234)
T KOG0876|consen 166 LFILTTYNAGDPLVWT 181 (234)
T ss_pred EEEEecCCCCCCeecc
Confidence 9999999999999986
No 10
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.97 E-value=7.3e-32 Score=202.14 Aligned_cols=82 Identities=49% Similarity=0.862 Sum_probs=69.4
Q ss_pred ceEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChHHHHHHhhcCCCcchhhcchhhhhhhh
Q 027142 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHD 128 (227)
Q Consensus 49 ~~~Lp~LpY~~~aLeP~IS~~tl~~H~~kHh~~YV~~LN~~l~~t~~~e~~sl~~ii~~~~~~~~~~~ifN~ag~~~NH~ 128 (227)
+|+||+|||+|++|||+||++||++||+|||++||++||++++++++ +.+++++++... .+..+||+|||+|||+
T Consensus 1 ~f~Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~~~-~~~~~~~~~~~~----~~~~~~nn~gg~~NH~ 75 (82)
T PF00081_consen 1 KFELPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKTEL-EGKSLEEIISNA----LRAALRNNAGGHYNHS 75 (82)
T ss_dssp SS-----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTCHH-HTSTHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccchhhhhhh----hhHHHHHHcchhhhHH
Confidence 48999999999999999999999999999999999999999999988 889999998652 3457999999999999
Q ss_pred hhhcccC
Q 027142 129 FFWESMK 135 (227)
Q Consensus 129 fFw~~L~ 135 (227)
|||++|+
T Consensus 76 ~fw~~ls 82 (82)
T PF00081_consen 76 FFWENLS 82 (82)
T ss_dssp HHHHTB-
T ss_pred HHHHHcC
Confidence 9999995
No 11
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=99.83 E-value=8.9e-21 Score=147.63 Aligned_cols=68 Identities=51% Similarity=0.980 Sum_probs=62.4
Q ss_pred CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCcccEEEEEEecCCcccccccCCCCCCCCCCceEEEecCCCCCCCcCC
Q 027142 140 GKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWD 219 (227)
Q Consensus 140 ~~P~g~L~~~I~~sFGS~d~Fk~~F~~aA~~~fGSGWvWLV~d~~~~L~i~~~~n~~~~~~~~~L~I~~T~N~~~Pl~~~ 219 (227)
++|+++|+++|+++|||+|+||++|.++|.++|||||+|||+|+ .+++|.|++|+|+++|++.+
T Consensus 1 g~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~----------------~~~~L~i~~t~n~~~p~~~~ 64 (106)
T PF02777_consen 1 GKPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYDP----------------SDGKLSIISTPNHDTPIIWG 64 (106)
T ss_dssp SS-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEET----------------TTTEEEEEEEETTTBGGGGT
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeecc----------------ccceeeeeeecccccccchh
Confidence 47999999999999999999999999999999999999999994 46899999999999999998
Q ss_pred cccc
Q 027142 220 YSVT 223 (227)
Q Consensus 220 ~~~~ 223 (227)
..|-
T Consensus 65 ~~Pl 68 (106)
T PF02777_consen 65 LIPL 68 (106)
T ss_dssp EEEE
T ss_pred hccc
Confidence 7763
No 12
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=50.18 E-value=18 Score=25.15 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=15.9
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q 027142 145 ELLGLIERDFGSFEKFLEE 163 (227)
Q Consensus 145 ~L~~~I~~sFGS~d~Fk~~ 163 (227)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4668999999999998854
No 13
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B.
Probab=39.47 E-value=20 Score=35.02 Aligned_cols=12 Identities=50% Similarity=1.193 Sum_probs=10.2
Q ss_pred cCCcccEEEEEE
Q 027142 170 TQFGSGWAWLVY 181 (227)
Q Consensus 170 ~~fGSGWvWLV~ 181 (227)
-.|||||.+.|.
T Consensus 376 v~fGsGWGfWVS 387 (535)
T PF05416_consen 376 VKFGSGWGFWVS 387 (535)
T ss_dssp EEETTEEEEESS
T ss_pred eecCCceeeeec
Confidence 469999999984
No 14
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.45 E-value=7.5 Score=35.78 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=44.4
Q ss_pred hhcCCHHHHHHHHHHHHhcCCcccEEE--EEEecC-CcccccccCCCCCCCCCCceEEEecCCCCCCC
Q 027142 152 RDFGSFEKFLEEFKAAAATQFGSGWAW--LVYKAN-NRADVANAVNPLPSEKDKSLLVVKTPNAVNPL 216 (227)
Q Consensus 152 ~sFGS~d~Fk~~F~~aA~~~fGSGWvW--LV~d~~-~~L~i~~~~n~~~~~~~~~L~I~~T~N~~~Pl 216 (227)
..|||+.+|+......|.+|.-.||+| |+.+.- ..+.++-..-|-+.++.|.|...+...=-+|+
T Consensus 214 ~~~~Syk~~~r~~~~iA~gmi~r~~A~~nll~~~Fp~~iRlSIH~hp~~g~Kfgsl~~~~e~~f~tpw 281 (330)
T COG3207 214 DYQGSYKALQRDAKEIAYGMIQRSWAWGNLLADQFPRAIRLSIHPHPADGLKFGSLMMPTEDDFLTPW 281 (330)
T ss_pred cccccHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhheEEeecCCCCCccccccccccCchhhcCcc
Confidence 468999999999999999999999999 555542 44445444444444566666665554444443
No 15
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=35.58 E-value=31 Score=30.65 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 027142 72 EFHWGKHHRAYVDNLNKQIVGTE 94 (227)
Q Consensus 72 ~~H~~kHh~~YV~~LN~~l~~t~ 94 (227)
.-||.|||++.++..|..++++.
T Consensus 227 ~~H~rkh~reW~~~A~~~~~qs~ 249 (251)
T COG4700 227 RPHYRKHHREWIKTANERLKQSV 249 (251)
T ss_pred chhHHHHHHHHHHHHHHHHHhhh
Confidence 45999999999999999887643
No 16
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=30.03 E-value=47 Score=24.84 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 027142 64 PHMSKDTLEFHWGKHHRAYVDNL 86 (227)
Q Consensus 64 P~IS~~tl~~H~~kHh~~YV~~L 86 (227)
| +|.++++.||..+|.-.+.++
T Consensus 10 p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 10 P-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred C-CCHHHHHHHHHhccHHHHHhC
Confidence 6 899999999999999998876
No 17
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=29.55 E-value=28 Score=24.99 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 027142 64 PHMSKDTLEFHWGKHHRAYVDNL 86 (227)
Q Consensus 64 P~IS~~tl~~H~~kHh~~YV~~L 86 (227)
|.+|.+.+.-||...|...|..+
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~~ 23 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKRL 23 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHHh
Confidence 78999999999999898877554
No 18
>KOG3935 consensus Predicted glycerate kinase [Carbohydrate transport and metabolism]
Probab=27.94 E-value=24 Score=33.56 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=20.5
Q ss_pred ccCCCeeeeecCCCCCCCCccccc
Q 027142 8 ASSAPTIWLTGQGLGGRSTRLPFH 31 (227)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (227)
+-.-|||-|.|-|.|||+..|++.
T Consensus 331 ~GGEptv~lsg~G~GGRnQelaL~ 354 (446)
T KOG3935|consen 331 FGGEPTVHLSGPGKGGRNQELALS 354 (446)
T ss_pred eCCCceEEecCCCCCcccHHHHHH
Confidence 345799999999999999988864
No 19
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=26.24 E-value=58 Score=20.44 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=16.2
Q ss_pred cccEEEEEEecCCcccccccCCCC
Q 027142 173 GSGWAWLVYKANNRADVANAVNPL 196 (227)
Q Consensus 173 GSGWvWLV~d~~~~L~i~~~~n~~ 196 (227)
|-|-.--|||..|.+.|-.|+||-
T Consensus 8 gvgvl~pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 8 GVGVLEPVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp SSSBEEEEE-TTS-EEEEEES-TT
T ss_pred CceEEEEeecCCCcEEEEEcCCCc
Confidence 567667789988888888888863
No 20
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=25.32 E-value=43 Score=23.19 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=32.8
Q ss_pred CCeeeeecCCCCCCCCccccccccccccccccCCceecceEeCCCC
Q 027142 11 APTIWLTGQGLGGRSTRLPFHWRNKKMEQRKTGGRISAKFDLKPPP 56 (227)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~Lp 56 (227)
--.|.++|++++.....+.+.+.+..-+.......-...+++|+++
T Consensus 16 g~~ItI~G~~f~~~~~~~~v~i~~~~~~~~~~~~~~~i~c~~p~~~ 61 (85)
T PF01833_consen 16 GTNITITGSNFGSNSSNISVKIGGSQCTVITVVSSTQITCTSPALP 61 (85)
T ss_dssp TSEEEEEEESSESSSTTEEEEETTEEEEEEGEEETTEEEEE--SCS
T ss_pred CEEEEEEEEeecccCCceEEEECCEeeeEEEEECCcEEEEEECCCC
Confidence 5579999999999999999999888554442444445568888876
No 21
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=25.24 E-value=40 Score=29.63 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.4
Q ss_pred HHhhcCCHHHHHHHHHHHHhc
Q 027142 150 IERDFGSFEKFLEEFKAAAAT 170 (227)
Q Consensus 150 I~~sFGS~d~Fk~~F~~aA~~ 170 (227)
+.++|+++|+|+++|...|.-
T Consensus 93 ~~~Sfe~L~~Wr~EFl~qa~~ 113 (210)
T KOG0394|consen 93 NPKSFENLENWRKEFLIQASP 113 (210)
T ss_pred ChhhhccHHHHHHHHHHhcCC
Confidence 458999999999999999863
No 22
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=24.68 E-value=49 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCccc
Q 027142 144 GELLGLIERDFGSFEKFLEEFKAAAATQFGSG 175 (227)
Q Consensus 144 g~L~~~I~~sFGS~d~Fk~~F~~aA~~~fGSG 175 (227)
..-.+.|.+.|||+|++++.=.+.-..+-|-|
T Consensus 13 ~~~ak~L~~~f~sl~~l~~a~~e~L~~i~gIG 44 (64)
T PF12826_consen 13 EKTAKLLAKHFGSLEALMNASVEELSAIPGIG 44 (64)
T ss_dssp HHHHHHHHHCCSCHHHHCC--HHHHCTSTT--
T ss_pred HHHHHHHHHHcCCHHHHHHcCHHHHhccCCcC
Confidence 45778899999999998876555444454444
No 23
>PF05161 MOFRL: MOFRL family; InterPro: IPR007835 The MOFRL(multi-organism fragment with rich Leucine) domain is found in bacteria and eukaryotes. The function of this domain is not clear, although it exists in some putative enzymes such as reductases and kinases.; PDB: 1X3L_A 2B8N_A.
Probab=23.81 E-value=14 Score=29.20 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=13.3
Q ss_pred cCCCeeeeecCCCCCCCCcccccccc
Q 027142 9 SSAPTIWLTGQGLGGRSTRLPFHWRN 34 (227)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (227)
.--||+=|+|+|.|||..-|++-.-.
T Consensus 7 GGE~TV~v~g~G~GGRNqElaL~~a~ 32 (107)
T PF05161_consen 7 GGETTVTVPGSGKGGRNQELALAAAL 32 (107)
T ss_dssp EE--B---SSS-S--HHHHHHHHHCC
T ss_pred CCccEEEECCCCcCcHHHHHHHHHHH
Confidence 34588999999999999887765543
No 24
>cd01935 Ntn_CGH_like Choloylglycine hydrolase (CGH)_like. This family of choloylglycine hydrolase-like proteins includes conjugated bile acid hydrolase (CBAH), penicillin V acylase (PVA), acid ceramidase (AC), and N-acylethanolamine-hydrolyzing acid amidase (NAAA) which cleave non-peptide carbon-nitrogen bonds in bile salt constituents. These enzymes have an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which they belong. This nucleophilic cysteine is exposed by post-translational prossessing of the precursor protein.
Probab=22.93 E-value=3e+02 Score=23.17 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=40.7
Q ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHHHHh-------cCCcccEEEEEEecCCccccccc
Q 027142 139 GGKPSGELLGLIERDFGSFEKFLEEFKAAAA-------TQFGSGWAWLVYKANNRADVANA 192 (227)
Q Consensus 139 ~~~P~g~L~~~I~~sFGS~d~Fk~~F~~aA~-------~~fGSGWvWLV~d~~~~L~i~~~ 192 (227)
.+.|...+...|-+.|.++|+-++.+.+... .-..+..-|++.|.+|+-.|+..
T Consensus 95 ~~~~~~~~~r~vL~~~~tv~ea~~~l~~~~~~~~~~~~~~~~~~~h~~i~D~~G~~~viE~ 155 (229)
T cd01935 95 DGLPAFELIRWVLENCDSVEEVKEALKKIPIVDFPIPLGGPAAPLHYILSDKSGDSAVIEP 155 (229)
T ss_pred CccCHHHHHHHHHHHcCCHHHHHHHHHhCcccccccCCCCCCcCEEEEEEcCCCCEEEEEE
Confidence 3456677888999999999999999987654 11256889999998776555543
No 25
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=21.97 E-value=1.2e+02 Score=19.29 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHH
Q 027142 144 GELLGLIERDFGSFEKFLEEFKAAA 168 (227)
Q Consensus 144 g~L~~~I~~sFGS~d~Fk~~F~~aA 168 (227)
+++...|.+-|-.+..-+++|+++.
T Consensus 7 ~kilrsiak~fkgvgk~rkqfk~as 31 (37)
T PF08025_consen 7 SKILRSIAKFFKGVGKVRKQFKEAS 31 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 5788999999999999999999875
No 26
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=21.25 E-value=42 Score=31.62 Aligned_cols=13 Identities=62% Similarity=1.216 Sum_probs=11.2
Q ss_pred eeeeecCCCCCCC
Q 027142 13 TIWLTGQGLGGRS 25 (227)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (227)
.|||||..|||.-
T Consensus 277 ~iwlTGHSLGGa~ 289 (425)
T COG5153 277 RIWLTGHSLGGAI 289 (425)
T ss_pred eEEEeccccchHH
Confidence 6999999999853
No 27
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=21.25 E-value=42 Score=31.62 Aligned_cols=13 Identities=62% Similarity=1.216 Sum_probs=11.2
Q ss_pred eeeeecCCCCCCC
Q 027142 13 TIWLTGQGLGGRS 25 (227)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (227)
.|||||..|||.-
T Consensus 277 ~iwlTGHSLGGa~ 289 (425)
T KOG4540|consen 277 RIWLTGHSLGGAI 289 (425)
T ss_pred eEEEeccccchHH
Confidence 6999999999853
Done!