Query 027143
Match_columns 227
No_of_seqs 232 out of 1733
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.8 6.1E-21 1.3E-25 176.2 6.8 61 160-225 4-64 (371)
2 KOG0713 Molecular chaperone (D 99.8 1.1E-19 2.3E-24 164.9 6.9 64 157-225 13-76 (336)
3 PRK14288 chaperone protein Dna 99.7 8.9E-18 1.9E-22 155.8 6.5 61 160-225 3-63 (369)
4 PRK14296 chaperone protein Dna 99.7 3.2E-17 6.9E-22 152.3 6.5 60 160-225 4-63 (372)
5 smart00271 DnaJ DnaJ molecular 99.7 1.6E-16 3.4E-21 109.9 7.4 59 161-223 2-60 (60)
6 PRK14279 chaperone protein Dna 99.7 6.3E-17 1.4E-21 151.3 7.1 61 160-225 9-69 (392)
7 KOG0712 Molecular chaperone (D 99.7 4.8E-17 1E-21 148.7 5.6 59 159-225 3-61 (337)
8 PF00226 DnaJ: DnaJ domain; I 99.7 1.3E-16 2.7E-21 112.2 6.4 61 161-225 1-61 (64)
9 PRK14282 chaperone protein Dna 99.7 9.7E-17 2.1E-21 148.8 6.9 62 160-225 4-65 (369)
10 PRK14286 chaperone protein Dna 99.7 1.1E-16 2.4E-21 148.7 6.7 61 160-225 4-64 (372)
11 KOG0717 Molecular chaperone (D 99.6 1.9E-16 4E-21 148.5 7.0 65 157-225 5-69 (508)
12 KOG0716 Molecular chaperone (D 99.6 2E-16 4.3E-21 140.0 6.6 62 159-225 30-91 (279)
13 cd06257 DnaJ DnaJ domain or J- 99.6 5.4E-16 1.2E-20 105.3 7.1 55 161-220 1-55 (55)
14 PRK14285 chaperone protein Dna 99.6 3E-16 6.5E-21 145.4 7.1 61 160-225 3-63 (365)
15 PRK14277 chaperone protein Dna 99.6 3.2E-16 7E-21 146.2 7.1 61 160-225 5-65 (386)
16 PTZ00037 DnaJ_C chaperone prot 99.6 3.2E-16 6.8E-21 147.9 6.7 58 159-225 27-84 (421)
17 PRK14295 chaperone protein Dna 99.6 3.9E-16 8.5E-21 145.8 6.9 61 160-225 9-69 (389)
18 PRK14287 chaperone protein Dna 99.6 4.5E-16 9.7E-21 144.6 6.8 60 160-225 4-63 (371)
19 KOG0691 Molecular chaperone (D 99.6 5.7E-16 1.2E-20 139.9 6.9 62 159-225 4-65 (296)
20 PRK14298 chaperone protein Dna 99.6 5.7E-16 1.2E-20 144.2 6.9 60 160-225 5-64 (377)
21 PRK14283 chaperone protein Dna 99.6 5.3E-16 1.1E-20 144.3 6.6 61 159-225 4-64 (378)
22 PRK14297 chaperone protein Dna 99.6 6.7E-16 1.5E-20 143.7 7.2 61 160-225 4-64 (380)
23 PRK14299 chaperone protein Dna 99.6 7.3E-16 1.6E-20 138.8 6.8 60 160-225 4-63 (291)
24 PRK14284 chaperone protein Dna 99.6 7.1E-16 1.5E-20 144.1 6.7 61 160-225 1-61 (391)
25 PRK14301 chaperone protein Dna 99.6 7.9E-16 1.7E-20 143.0 6.9 61 160-225 4-64 (373)
26 PRK14294 chaperone protein Dna 99.6 7.6E-16 1.6E-20 142.7 6.7 61 160-225 4-64 (366)
27 PRK14276 chaperone protein Dna 99.6 6.8E-16 1.5E-20 143.7 6.2 60 160-225 4-63 (380)
28 PRK14278 chaperone protein Dna 99.6 7E-16 1.5E-20 143.6 6.2 60 160-225 3-62 (378)
29 PRK14290 chaperone protein Dna 99.6 1.2E-15 2.6E-20 141.4 7.0 62 160-225 3-64 (365)
30 PRK14291 chaperone protein Dna 99.6 9.2E-16 2E-20 142.9 6.3 60 160-225 3-62 (382)
31 PRK10767 chaperone protein Dna 99.6 1.2E-15 2.6E-20 141.5 6.8 61 160-225 4-64 (371)
32 PRK14281 chaperone protein Dna 99.6 1.1E-15 2.4E-20 143.1 6.7 61 160-225 3-63 (397)
33 PRK14280 chaperone protein Dna 99.6 1.4E-15 3E-20 141.5 6.1 60 160-225 4-63 (376)
34 KOG0715 Molecular chaperone (D 99.6 3.3E-15 7.2E-20 134.7 6.1 60 160-225 43-102 (288)
35 PRK14289 chaperone protein Dna 99.6 5.2E-15 1.1E-19 138.0 7.1 61 160-225 5-65 (386)
36 PRK14292 chaperone protein Dna 99.6 5.1E-15 1.1E-19 137.3 7.0 61 159-225 1-61 (371)
37 PRK10266 curved DNA-binding pr 99.6 4.4E-15 9.4E-20 134.6 6.1 60 160-225 4-63 (306)
38 TIGR02349 DnaJ_bact chaperone 99.5 5.1E-15 1.1E-19 136.4 6.1 59 161-225 1-59 (354)
39 PRK14300 chaperone protein Dna 99.5 5.9E-15 1.3E-19 137.1 6.0 60 160-225 3-62 (372)
40 COG2214 CbpA DnaJ-class molecu 99.5 2.2E-14 4.8E-19 118.9 7.3 64 158-225 4-67 (237)
41 PRK14293 chaperone protein Dna 99.5 1.2E-14 2.6E-19 135.1 5.9 60 160-225 3-62 (374)
42 PTZ00341 Ring-infected erythro 99.5 2.6E-14 5.7E-19 144.0 7.5 65 155-225 568-632 (1136)
43 KOG0718 Molecular chaperone (D 99.5 2.2E-14 4.7E-19 134.9 6.2 63 159-225 8-72 (546)
44 KOG0721 Molecular chaperone (D 99.5 5.9E-14 1.3E-18 121.0 5.8 62 159-225 98-159 (230)
45 KOG0719 Molecular chaperone (D 99.5 5.6E-14 1.2E-18 122.4 5.7 62 160-225 14-76 (264)
46 PRK05014 hscB co-chaperone Hsc 99.4 1.9E-13 4.1E-18 114.8 7.2 63 161-225 2-68 (171)
47 PRK01356 hscB co-chaperone Hsc 99.4 2.1E-13 4.7E-18 114.0 6.9 64 160-225 2-67 (166)
48 PHA03102 Small T antigen; Revi 99.4 4.6E-13 1E-17 110.7 6.3 61 159-226 4-64 (153)
49 PRK03578 hscB co-chaperone Hsc 99.4 1E-12 2.2E-17 110.9 7.9 64 160-225 6-73 (176)
50 PRK00294 hscB co-chaperone Hsc 99.4 1E-12 2.2E-17 110.7 7.3 65 159-225 3-71 (173)
51 PRK09430 djlA Dna-J like membr 99.3 1.3E-12 2.8E-17 116.7 6.6 62 157-222 197-264 (267)
52 PTZ00100 DnaJ chaperone protei 99.3 2.5E-12 5.4E-17 101.7 7.1 52 159-219 64-115 (116)
53 TIGR03835 termin_org_DnaJ term 99.3 1.4E-12 3E-17 129.2 6.6 60 160-225 2-61 (871)
54 KOG0624 dsRNA-activated protei 99.3 2.4E-12 5.2E-17 118.4 5.5 63 160-226 394-458 (504)
55 KOG0720 Molecular chaperone (D 99.2 1.3E-11 2.9E-16 116.1 5.0 62 158-225 233-294 (490)
56 KOG0722 Molecular chaperone (D 99.2 1.1E-11 2.3E-16 109.7 3.5 61 159-225 32-92 (329)
57 KOG0550 Molecular chaperone (D 99.2 5.4E-11 1.2E-15 111.2 8.3 63 159-225 372-434 (486)
58 PRK01773 hscB co-chaperone Hsc 99.2 6.2E-11 1.4E-15 99.9 7.0 65 159-225 1-69 (173)
59 KOG0714 Molecular chaperone (D 99.2 2.5E-11 5.4E-16 105.4 4.5 63 159-225 2-64 (306)
60 KOG1150 Predicted molecular ch 99.0 4.2E-10 9.1E-15 96.5 5.9 62 159-224 52-113 (250)
61 PHA02624 large T antigen; Prov 99.0 4.5E-10 9.7E-15 110.0 6.8 60 159-225 10-69 (647)
62 COG5407 SEC63 Preprotein trans 98.9 4.8E-10 1E-14 105.7 3.8 62 160-225 98-163 (610)
63 TIGR00714 hscB Fe-S protein as 98.9 2.1E-09 4.5E-14 89.2 6.6 51 175-225 2-56 (157)
64 KOG1789 Endocytosis protein RM 98.6 7.2E-08 1.6E-12 98.4 7.1 63 155-221 1276-1338(2235)
65 COG5269 ZUO1 Ribosome-associat 98.4 4E-07 8.7E-12 81.6 5.0 65 160-225 43-108 (379)
66 KOG0568 Molecular chaperone (D 98.2 1.5E-06 3.3E-11 76.5 5.5 57 158-220 45-102 (342)
67 KOG0723 Molecular chaperone (D 98.0 2.1E-05 4.6E-10 61.4 6.0 56 158-222 54-109 (112)
68 KOG3192 Mitochondrial J-type c 97.5 0.00013 2.9E-09 60.6 5.0 66 158-225 6-75 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.0 0.00056 1.2E-08 57.4 3.5 55 160-218 113-173 (174)
70 COG1076 DjlA DnaJ-domain-conta 96.1 0.0024 5.3E-08 53.6 1.3 62 162-225 3-68 (174)
71 KOG0431 Auxilin-like protein a 96.0 0.01 2.2E-07 57.1 5.2 44 175-218 399-448 (453)
72 PF03656 Pam16: Pam16; InterP 95.8 0.028 6E-07 45.4 5.9 57 156-221 54-110 (127)
73 PF13446 RPT: A repeated domai 92.7 0.4 8.7E-06 33.3 5.6 29 158-190 3-31 (62)
74 PF14687 DUF4460: Domain of un 82.1 2.7 5.9E-05 33.1 4.6 47 176-222 6-55 (112)
75 CHL00008 petG cytochrome b6/f 72.5 1.8 3.8E-05 27.6 0.8 19 33-51 9-27 (37)
76 PRK00665 petG cytochrome b6-f 71.2 2 4.3E-05 27.3 0.8 19 33-51 9-27 (37)
77 PF14880 COX14: Cytochrome oxi 68.9 20 0.00043 24.8 5.6 36 32-85 16-53 (59)
78 PF13121 DUF3976: Domain of un 67.2 5.3 0.00012 25.5 2.1 22 22-43 16-37 (41)
79 PF02529 PetG: Cytochrome B6-F 66.2 3.2 6.9E-05 26.5 1.0 19 33-51 9-27 (37)
80 PF11240 DUF3042: Protein of u 65.5 6.3 0.00014 27.3 2.4 24 24-47 2-25 (54)
81 PF09333 ATG_C: ATG C terminal 65.2 2 4.4E-05 32.8 -0.1 36 24-59 49-86 (98)
82 COG2879 Uncharacterized small 50.7 27 0.00058 25.0 3.6 28 184-214 27-54 (65)
83 PRK11677 hypothetical protein; 49.5 1.4E+02 0.0031 24.2 9.6 20 30-49 3-22 (134)
84 PF07439 DUF1515: Protein of u 46.9 17 0.00037 28.7 2.3 21 27-47 76-96 (112)
85 PF06120 Phage_HK97_TLTM: Tail 45.4 33 0.00071 31.6 4.4 38 29-85 13-50 (301)
86 PF07709 SRR: Seven Residue Re 45.0 13 0.00029 18.4 1.0 13 207-219 2-14 (14)
87 PRK12585 putative monovalent c 43.7 1.6E+02 0.0034 25.6 7.9 30 27-56 68-99 (197)
88 KOG3442 Uncharacterized conser 42.7 48 0.001 26.9 4.3 39 157-199 56-94 (132)
89 TIGR02811 formate_TAT formate 37.4 28 0.0006 24.8 2.1 21 25-45 13-33 (66)
90 PF07271 Cytadhesin_P30: Cytad 37.3 1.3E+02 0.0027 27.5 6.6 7 12-18 66-72 (279)
91 PF08802 CytB6-F_Fe-S: Cytochr 34.9 47 0.001 21.5 2.6 20 28-47 10-29 (39)
92 PF14654 Epiglycanin_C: Mucin, 34.7 39 0.00084 26.3 2.6 30 20-49 8-38 (106)
93 KOG4631 NADH:ubiquinone oxidor 33.0 27 0.00058 26.8 1.5 26 24-49 63-88 (100)
94 PRK01844 hypothetical protein; 32.8 39 0.00084 24.7 2.2 20 30-49 7-26 (72)
95 KOG4061 DMQ mono-oxygenase/Ubi 30.0 1.3E+02 0.0029 26.0 5.3 45 22-85 116-160 (217)
96 PTZ00478 Sec superfamily; Prov 28.9 22 0.00047 26.6 0.3 32 14-45 37-69 (81)
97 PF08122 NDUF_B12: NADH-ubiqui 28.8 34 0.00073 23.7 1.3 23 22-44 23-45 (57)
98 PF12434 Malate_DH: Malate deh 28.7 65 0.0014 19.3 2.3 18 177-194 9-26 (28)
99 PRK09400 secE preprotein trans 28.6 37 0.0008 23.9 1.5 25 22-46 33-57 (61)
100 PRK00523 hypothetical protein; 27.5 51 0.0011 24.1 2.1 20 30-49 8-27 (72)
101 PF08447 PAS_3: PAS fold; Int 26.1 29 0.00063 24.1 0.6 28 160-195 6-34 (91)
102 PRK12586 putative monovalent c 26.0 97 0.0021 25.6 3.7 34 26-59 70-105 (145)
103 PF11131 PhrC_PhrF: Rap-phr ex 25.8 49 0.0011 21.1 1.5 21 36-59 6-26 (37)
104 PF08105 Antimicrobial10: Metc 24.4 1.2E+02 0.0026 20.7 3.3 34 30-63 5-42 (52)
105 PF02216 B: B domain; InterPr 23.5 1.3E+02 0.0029 20.8 3.4 31 160-197 11-41 (54)
106 PF14055 NVEALA: NVEALA protei 22.9 45 0.00098 23.3 1.1 24 28-51 3-26 (65)
107 TIGR00327 secE_euk_arch protei 22.8 48 0.0011 23.4 1.2 25 22-46 29-53 (61)
108 PF10828 DUF2570: Protein of u 22.7 3.6E+02 0.0077 20.7 7.1 20 28-47 2-21 (110)
109 COG3114 CcmD Heme exporter pro 22.4 3E+02 0.0066 19.8 6.4 18 30-47 15-32 (67)
110 PRK14762 membrane protein; Pro 21.5 1.2E+02 0.0026 17.8 2.4 16 28-43 4-19 (27)
111 PF06295 DUF1043: Protein of u 21.1 4.2E+02 0.0091 20.9 8.0 23 95-117 55-77 (128)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.1e-21 Score=176.15 Aligned_cols=61 Identities=43% Similarity=0.730 Sum_probs=57.8
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||+|++++ +|+++|++|++||+||+||++|.
T Consensus 4 ~dyYeiLGV~k~A----s~~EIKkAYRkLA~kyHPD~n~g~~-~AeeKFKEI~eAYEVLsD~eKRa 64 (371)
T COG0484 4 RDYYEILGVSKDA----SEEEIKKAYRKLAKKYHPDRNPGDK-EAEEKFKEINEAYEVLSDPEKRA 64 (371)
T ss_pred cchhhhcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHHHHhCCHHHHH
Confidence 6999999999999 9999999999999999999999754 49999999999999999999986
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-19 Score=164.95 Aligned_cols=64 Identities=33% Similarity=0.593 Sum_probs=60.2
Q ss_pred CCchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 157 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 157 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
....|||+||||+++| +..|||+|||+||++|||||||+++. |.+.|++|+.||+||+||.+|.
T Consensus 13 ~~~rDfYelLgV~k~A----sd~eIKkAYRKLALk~HPDkNpddp~-A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNA----SDQEIKKAYRKLALKYHPDKNPDDPN-ANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred hcCCCHHHHhCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHHHHhcCHHHHH
Confidence 3457999999999999 99999999999999999999999865 9999999999999999999986
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=8.9e-18 Score=155.82 Aligned_cols=61 Identities=34% Similarity=0.626 Sum_probs=56.9
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||+++.+.+ |+++|++|++||+||+||.+|.
T Consensus 3 ~dyY~vLgv~~~A----s~~eIkkayrkla~k~HPD~~~~~~~-a~~~f~~i~~AYevLsd~~kR~ 63 (369)
T PRK14288 3 LSYYEILEVEKHS----NQETIKKSYRKLALKYHPDRNAGDKE-AEEKFKLINEAYGVLSDEKKRA 63 (369)
T ss_pred CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCccH-HHHHHHHHHHHHHHhccHHHHH
Confidence 5999999999999 99999999999999999999986544 8999999999999999999884
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.2e-17 Score=152.34 Aligned_cols=60 Identities=32% Similarity=0.535 Sum_probs=56.3
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|.
T Consensus 4 ~dyY~~Lgv~~~a----~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~ 63 (372)
T PRK14296 4 KDYYEVLGVSKTA----SEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRK 63 (372)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhh
Confidence 6999999999999 99999999999999999999975 348999999999999999999985
No 5
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.67 E-value=1.6e-16 Score=109.91 Aligned_cols=59 Identities=44% Similarity=0.719 Sum_probs=54.2
Q ss_pred hhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccc
Q 027143 161 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 223 (227)
Q Consensus 161 d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~k 223 (227)
+||+||||++++ +.++|+++|+++++++|||++++..+.+.+.|++|++||++|+||.+
T Consensus 2 ~~y~vLgl~~~~----~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 2 DYYEILGVPRDA----SLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 799999999998 99999999999999999999986445589999999999999999853
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=6.3e-17 Score=151.28 Aligned_cols=61 Identities=36% Similarity=0.572 Sum_probs=57.1
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 9 ~Dyy~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vLsD~~KR~ 69 (392)
T PRK14279 9 KDFYKELGVSSDA----SAEEIKKAYRKLARELHPDANPGDP-AAEERFKAVSEAHDVLSDPAKRK 69 (392)
T ss_pred cCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCh-HHHHHHHHHHHHHHHhcchhhhh
Confidence 6999999999999 9999999999999999999998654 48999999999999999999985
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.8e-17 Score=148.66 Aligned_cols=59 Identities=37% Similarity=0.610 Sum_probs=56.2
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.+.+|+||||+++| |.+|||+|||+||++||||||++ +.++|++|..||+||+||.+|.
T Consensus 3 ~~~~y~il~v~~~A----s~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~ 61 (337)
T KOG0712|consen 3 NTKLYDILGVSPDA----SEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKRE 61 (337)
T ss_pred ccccceeeccCCCc----CHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHH
Confidence 46899999999999 99999999999999999999998 7899999999999999999884
No 8
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.67 E-value=1.3e-16 Score=112.16 Aligned_cols=61 Identities=34% Similarity=0.658 Sum_probs=56.7
Q ss_pred hhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 161 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 161 d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
|+|+||||++++ +.++|+++|+++++++|||+++.....+.+.|..|++||++|++|.+|.
T Consensus 1 ~~y~iLgl~~~~----~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDA----SDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTS----SHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCC----CHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 689999999999 9999999999999999999988765568999999999999999999874
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.7e-17 Score=148.80 Aligned_cols=62 Identities=39% Similarity=0.680 Sum_probs=57.9
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||+++.+...|+++|++|++||+||+||.+|.
T Consensus 4 ~d~y~~lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 65 (369)
T PRK14282 4 KDYYEILGVSRNA----TQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65 (369)
T ss_pred CChHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence 5999999999999 9999999999999999999998764558999999999999999999885
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.1e-16 Score=148.68 Aligned_cols=61 Identities=41% Similarity=0.750 Sum_probs=56.8
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||+++++.+ |+++|++|++||+||+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kR~ 64 (372)
T PRK14286 4 RSYYDILGVSKSA----NDEEIKSAYRKLAIKYHPDKNKGNKE-SEEKFKEATEAYEILRDPKKRQ 64 (372)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchH-HHHHHHHHHHHHHHhccHHHHH
Confidence 5999999999999 99999999999999999999986544 8999999999999999999884
No 11
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.9e-16 Score=148.49 Aligned_cols=65 Identities=29% Similarity=0.553 Sum_probs=61.5
Q ss_pred CCchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 157 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 157 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..+..||+||||...+ +..+||++||+||++|||||||+..++|++.|+.|+.||+||+||+.|.
T Consensus 5 ~~~~c~YE~L~v~~~a----~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~ 69 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDA----DDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA 69 (508)
T ss_pred hhhhHHHHHhcccccC----CHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence 4567999999999999 9999999999999999999999998889999999999999999999884
No 12
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2e-16 Score=140.05 Aligned_cols=62 Identities=40% Similarity=0.605 Sum_probs=58.6
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..++|+||||++++ |.++||++||+|+++||||+++++++ +..+|++||+||.||+||.+|.
T Consensus 30 ~~~LYdVLgl~k~a----t~d~IKKaYR~L~~k~HPD~~gd~P~-~~dkf~eIN~Ay~ILsD~~kR~ 91 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTA----TKDEIKKAYRKLALKYHPDKNGDNPE-ATDKFKEINTAYAILSDPTKRN 91 (279)
T ss_pred hhHHHHHhCCCccc----chHHHHHHHHHHHHHhCCCcCCCCch-hHHHHHHHHHHHHHhcChhhhh
Confidence 56999999999999 99999999999999999999999844 8999999999999999999985
No 13
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.64 E-value=5.4e-16 Score=105.29 Aligned_cols=55 Identities=38% Similarity=0.672 Sum_probs=51.2
Q ss_pred hhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 027143 161 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQ 220 (227)
Q Consensus 161 d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~d 220 (227)
+||+||||+.++ |.++|+++|++|++++|||++++. +.+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~----~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDA----SDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence 689999999998 999999999999999999999875 4589999999999999986
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=3e-16 Score=145.45 Aligned_cols=61 Identities=41% Similarity=0.689 Sum_probs=56.7
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 3 ~d~y~iLgv~~~a----~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~ 63 (365)
T PRK14285 3 RDYYEILGLSKGA----SKDEIKKAYRKIAIKYHPDKNKGNK-EAESIFKEATEAYEVLIDDNKRA 63 (365)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHcCcchhH
Confidence 5899999999999 9999999999999999999998654 37899999999999999999884
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.2e-16 Score=146.17 Aligned_cols=61 Identities=48% Similarity=0.758 Sum_probs=56.8
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 5 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~ 65 (386)
T PRK14277 5 KDYYEILGVDRNA----TEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILSDPQKRA 65 (386)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCch-HHHHHHHHHHHHHHHhCCHHHHH
Confidence 6999999999999 9999999999999999999998654 38899999999999999999884
No 16
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.63 E-value=3.2e-16 Score=147.87 Aligned_cols=58 Identities=36% Similarity=0.527 Sum_probs=54.3
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..|||+||||+++| |.+|||+|||+||++||||++++ .++|++|++||+||+||.+|.
T Consensus 27 ~~d~Y~vLGV~~~A----s~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~ 84 (421)
T PTZ00037 27 NEKLYEVLNLSKDC----TTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRK 84 (421)
T ss_pred chhHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHH
Confidence 47999999999999 99999999999999999999864 479999999999999999985
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.9e-16 Score=145.83 Aligned_cols=61 Identities=44% Similarity=0.761 Sum_probs=56.6
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 9 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~ 69 (389)
T PRK14295 9 KDYYKVLGVPKDA----TEAEIKKAYRKLAREYHPDANKGDA-KAEERFKEISEAYDVLSDEKKRK 69 (389)
T ss_pred cCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCch-hHHHHHHHHHHHHHHHCchhhHH
Confidence 5999999999999 9999999999999999999998653 38999999999999999999874
No 18
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4.5e-16 Score=144.58 Aligned_cols=60 Identities=40% Similarity=0.681 Sum_probs=56.0
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~ 63 (371)
T PRK14287 4 RDYYEVLGVDRNA----SVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKA 63 (371)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHH
Confidence 5999999999999 99999999999999999999975 348899999999999999999884
No 19
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.7e-16 Score=139.86 Aligned_cols=62 Identities=39% Similarity=0.673 Sum_probs=59.5
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..|||+||||+.++ |..||++|||.++++|||||||+++. |.++|+.|.+||+||+|+..|.
T Consensus 4 ~~dyY~lLgi~~~a----t~~eIkKaYr~kaL~~HPDKNp~dP~-A~ekFq~L~eAy~VL~D~~~R~ 65 (296)
T KOG0691|consen 4 DTDYYDLLGISEDA----TDAEIKKAYRKKALQYHPDKNPGDPQ-AAEKFQELSEAYEVLSDEESRA 65 (296)
T ss_pred cchHHHHhCCCCCC----CHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHH
Confidence 57999999999999 99999999999999999999999988 9999999999999999999885
No 20
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=5.7e-16 Score=144.20 Aligned_cols=60 Identities=35% Similarity=0.615 Sum_probs=56.1
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+||++||||++++ +.|+++|++|++||+||+||.+|.
T Consensus 5 ~d~y~iLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 5 RDYYEILGLSKDA----SVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCHHHhhCCCCCC----CHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhh
Confidence 6999999999999 99999999999999999999975 347899999999999999999885
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=5.3e-16 Score=144.33 Aligned_cols=61 Identities=39% Similarity=0.665 Sum_probs=56.7
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..|||+||||+++| |.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|.
T Consensus 4 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~ 64 (378)
T PRK14283 4 KRDYYEVLGVDRNA----DKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQ 64 (378)
T ss_pred cCChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHH
Confidence 36999999999999 99999999999999999999985 448999999999999999999874
No 22
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=6.7e-16 Score=143.73 Aligned_cols=61 Identities=44% Similarity=0.748 Sum_probs=56.9
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 4 KDYYEVLGLEKGA----SDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred CChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcH-HHHHHHHHHHHHHHHhcCHhhhC
Confidence 5999999999999 9999999999999999999998654 38999999999999999999885
No 23
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=7.3e-16 Score=138.83 Aligned_cols=60 Identities=35% Similarity=0.635 Sum_probs=55.8
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+||++||||++++ +.++++|++|++||++|+||.+|.
T Consensus 4 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~ 63 (291)
T PRK14299 4 KDYYAILGVPKNA----SQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRR 63 (291)
T ss_pred CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHH
Confidence 6999999999999 99999999999999999999974 348899999999999999998874
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=7.1e-16 Score=144.10 Aligned_cols=61 Identities=39% Similarity=0.699 Sum_probs=56.5
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+||++||||+++++.. |+++|++|++||+||+||.+|.
T Consensus 1 ~d~y~iLgv~~~a----~~~eikkayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kR~ 61 (391)
T PRK14284 1 MDYYTILGVSKTA----SPEEIKKAYRKLAVKYHPDKNPGDAE-AEKRFKEVSEAYEVLSDAQKRE 61 (391)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchH-HHHHHHHHHHHHHHhcCHHHHH
Confidence 3899999999999 99999999999999999999987544 8999999999999999998874
No 25
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=7.9e-16 Score=143.03 Aligned_cols=61 Identities=44% Similarity=0.695 Sum_probs=56.8
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.++||+|||+||++||||+++++.+ |+++|++|++||+||+||.+|.
T Consensus 4 ~~~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~ 64 (373)
T PRK14301 4 RDYYEVLGVSRDA----SEDEIKKAYRKLALQYHPDRNPDNPE-AEQKFKEAAEAYEVLRDAEKRA 64 (373)
T ss_pred CChHHhcCCCCCC----CHHHHHHHHHHHHHHhCCCcCCCChH-HHHHHHHHHHHHHHhcchhhhh
Confidence 6999999999999 99999999999999999999986543 8899999999999999999885
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=7.6e-16 Score=142.73 Aligned_cols=61 Identities=41% Similarity=0.686 Sum_probs=56.8
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+||++||||+++++.+ |+++|++|++||+||+||.+|.
T Consensus 4 ~d~y~~lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-~~~~f~~~~~Ay~vL~d~~~r~ 64 (366)
T PRK14294 4 RDYYEILGVTRDA----SEEEIKKSYRKLAMKYHPDRNPGDKE-AEELFKEAAEAYEVLSDPKKRG 64 (366)
T ss_pred CChHHHhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCchH-HHHHHHHHHHHHHHhccHHHHH
Confidence 6999999999999 99999999999999999999986544 8899999999999999999884
No 27
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=6.8e-16 Score=143.74 Aligned_cols=60 Identities=37% Similarity=0.632 Sum_probs=56.1
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||++++ +.|+++|++|++||+||+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~ 63 (380)
T PRK14276 4 TEYYDRLGVSKDA----SQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRA 63 (380)
T ss_pred CCHHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhh
Confidence 5999999999999 99999999999999999999985 347899999999999999999885
No 28
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=7e-16 Score=143.62 Aligned_cols=60 Identities=43% Similarity=0.708 Sum_probs=56.1
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||++++ +.|+++|++|++||+||+||.+|.
T Consensus 3 ~d~y~iLgv~~~a----~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~ 62 (378)
T PRK14278 3 RDYYGLLGVSRNA----SDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRR 62 (378)
T ss_pred CCcceecCCCCCC----CHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhh
Confidence 5899999999999 99999999999999999999985 448899999999999999999885
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.2e-15 Score=141.40 Aligned_cols=62 Identities=44% Similarity=0.730 Sum_probs=58.0
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+|+++||||+++++.+.|+++|++|++||++|+||.+|.
T Consensus 3 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (365)
T PRK14290 3 KDYYKILGVDRNA----SQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64 (365)
T ss_pred CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence 5999999999999 9999999999999999999998766568999999999999999999874
No 30
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=9.2e-16 Score=142.95 Aligned_cols=60 Identities=38% Similarity=0.657 Sum_probs=56.1
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.++||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|.
T Consensus 3 ~d~Y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~ 62 (382)
T PRK14291 3 KDYYEILGVSRNA----TQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRK 62 (382)
T ss_pred CCHHHhhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHH
Confidence 5999999999999 99999999999999999999986 347899999999999999999884
No 31
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.2e-15 Score=141.53 Aligned_cols=61 Identities=46% Similarity=0.751 Sum_probs=56.7
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||+++| |.+|||+|||+||++||||+++++.. |+++|++|++||++|+||.+|.
T Consensus 4 ~d~y~iLgv~~~a----s~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~r~ 64 (371)
T PRK10767 4 RDYYEVLGVSRNA----SEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPQKRA 64 (371)
T ss_pred CChHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCcHH-HHHHHHHHHHHHHHhcchhhhh
Confidence 5999999999999 99999999999999999999986544 8899999999999999999875
No 32
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.1e-15 Score=143.08 Aligned_cols=61 Identities=44% Similarity=0.689 Sum_probs=56.6
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ +.+|||+|||+||++||||+++++.. |+++|++|++||++|+||.+|.
T Consensus 3 ~d~y~iLgv~~~a----~~~eikkayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~~r~ 63 (397)
T PRK14281 3 RDYYEVLGVSRSA----DKDEIKKAYRKLALKYHPDKNPDNKE-AEEHFKEVNEAYEVLSNDDKRR 63 (397)
T ss_pred CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCchH-HHHHHHHHHHHHHHhhhhhhhh
Confidence 5999999999999 99999999999999999999986543 7899999999999999999875
No 33
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.4e-15 Score=141.53 Aligned_cols=60 Identities=38% Similarity=0.698 Sum_probs=55.9
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+||++||||++++ +.|+++|++|++||+||+||.+|.
T Consensus 4 ~~~y~iLgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (376)
T PRK14280 4 RDYYEVLGVSKSA----SKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRA 63 (376)
T ss_pred CChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhccHhHHH
Confidence 5999999999999 99999999999999999999975 338899999999999999999884
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.3e-15 Score=134.73 Aligned_cols=60 Identities=45% Similarity=0.687 Sum_probs=56.7
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |..|||+||++|||+||||.+.+. .|.++|++|.+||+||+|+.+|.
T Consensus 43 ~d~Y~vLgv~~~A----t~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 43 EDYYKVLGVSRNA----TLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred cchhhhhCcCCCC----CHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHH
Confidence 3999999999999 999999999999999999999885 48999999999999999999884
No 35
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=5.2e-15 Score=138.00 Aligned_cols=61 Identities=44% Similarity=0.722 Sum_probs=56.8
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+||++||||+++++.+ |+++|++|++||++|+||.+|.
T Consensus 5 ~~~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 5 RDYYEVLGVSKTA----TVDEIKKAYRKKAIQYHPDKNPGDKE-AEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHH
Confidence 5999999999999 99999999999999999999986544 8999999999999999998874
No 36
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=5.1e-15 Score=137.33 Aligned_cols=61 Identities=31% Similarity=0.597 Sum_probs=56.4
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
+.|||+||||++++ |.++||+|||+|+++||||++++ ..|+++|++|++||++|+||.+|.
T Consensus 1 ~~d~y~~Lgv~~~a----~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~ 61 (371)
T PRK14292 1 MMDYYELLGVSRTA----SADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRA 61 (371)
T ss_pred CCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhh
Confidence 35899999999999 99999999999999999999985 348899999999999999999874
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.55 E-value=4.4e-15 Score=134.60 Aligned_cols=60 Identities=33% Similarity=0.609 Sum_probs=55.7
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+||++||||++++ ..++++|++|++||++|+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~k~HPD~~~~--~~~~~~f~~i~~Ay~~L~~~~kr~ 63 (306)
T PRK10266 4 KDYYAIMGVKPTD----DLKTIKTAYRRLARKYHPDVSKE--PDAEARFKEVAEAWEVLSDEQRRA 63 (306)
T ss_pred CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhhhHHHHH
Confidence 6999999999999 99999999999999999999875 348999999999999999999884
No 38
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.55 E-value=5.1e-15 Score=136.40 Aligned_cols=59 Identities=41% Similarity=0.705 Sum_probs=54.7
Q ss_pred hhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 161 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 161 d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
|||+||||++++ |.++||+|||+||++||||+++. +.++++|++|++||++|+|+.+|.
T Consensus 1 d~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 1 DYYEILGVSKDA----SEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred ChHHhCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHH
Confidence 699999999999 99999999999999999999973 347899999999999999999874
No 39
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=5.9e-15 Score=137.11 Aligned_cols=60 Identities=35% Similarity=0.686 Sum_probs=55.5
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+||++||||++++ ..++++|++|++||++|+|+.+|.
T Consensus 3 ~~~y~iLgv~~~a----s~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~ 62 (372)
T PRK14300 3 QDYYQILGVSKTA----SQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRA 62 (372)
T ss_pred CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhh
Confidence 5999999999999 99999999999999999999974 337889999999999999999875
No 40
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.2e-14 Score=118.88 Aligned_cols=64 Identities=36% Similarity=0.609 Sum_probs=58.7
Q ss_pred CchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 158 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 158 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
...++|+||||++++ +..||+++||+++++||||+++.+...+++.|+.|++||++|+|+.+|.
T Consensus 4 ~~~~~y~iLgv~~~a----s~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 4 DLLDYYEILGVPPNA----SLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhhHHHHhCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 457999999999999 9999999999999999999998765358999999999999999998874
No 41
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.2e-14 Score=135.06 Aligned_cols=60 Identities=33% Similarity=0.625 Sum_probs=55.6
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ |.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|.
T Consensus 3 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 3 ADYYEILGVSRDA----DKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHH
Confidence 5899999999999 99999999999999999999975 337899999999999999999874
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.50 E-value=2.6e-14 Score=143.97 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=59.2
Q ss_pred cCCCchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 155 ESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 155 ~~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
......+||+||||+++| |..+||+|||+||++||||+++++ .|..+|+.|++||+||+||.+|.
T Consensus 568 ~~~~d~dYYdILGVs~dA----S~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk 632 (1136)
T PTZ00341 568 IEIPDTLFYDILGVGVNA----DMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKK 632 (1136)
T ss_pred ccCCCCChHHHcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHH
Confidence 344567999999999999 999999999999999999999875 37889999999999999999985
No 43
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.2e-14 Score=134.95 Aligned_cols=63 Identities=35% Similarity=0.585 Sum_probs=58.2
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ--GNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~--~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..++|.+|+|+++| |.+||++|||++++.|||||+. +.++.|+++|+.|..|||||+||++|.
T Consensus 8 e~e~Ya~LNlpkdA----t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 8 EIELYALLNLPKDA----TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred hhhHHHHhCCCccc----CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 35999999999999 9999999999999999999985 447789999999999999999999884
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.9e-14 Score=121.04 Aligned_cols=62 Identities=31% Similarity=0.541 Sum_probs=56.0
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.-|+|+||||++++ |..|||+|||+|+++|||||++.. +..++.|..|.+||+.|+|+..|.
T Consensus 98 ~fDPyEILGl~pga----s~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sre 159 (230)
T KOG0721|consen 98 KFDPYEILGLDPGA----SEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRE 159 (230)
T ss_pred cCCcHHhhCCCCCC----CHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHH
Confidence 35999999999999 999999999999999999998764 336889999999999999998775
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.6e-14 Score=122.40 Aligned_cols=62 Identities=34% Similarity=0.596 Sum_probs=56.9
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG-NKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~-~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|+|+||||.+++ |..+|++||++|++.+|||+++. +..+|+.+|+.|+.||+||+|..+|.
T Consensus 14 ~d~YevLGVer~a----~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~ 76 (264)
T KOG0719|consen 14 KDLYEVLGVERDA----TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA 76 (264)
T ss_pred cCHHHHhhhcccC----CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4999999999999 99999999999999999999963 34569999999999999999999884
No 46
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=1.9e-13 Score=114.79 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=54.8
Q ss_pred hhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHhcCccccc
Q 027143 161 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 161 d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~----~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
|||+||||++.+ .++..+|+++|++|++++|||++.+.. ..+.+.|..||+||++|+||.+|.
T Consensus 2 ~yf~llgl~~~~--~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra 68 (171)
T PRK05014 2 DYFTLFGLPARY--DIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA 68 (171)
T ss_pred CHHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence 799999999964 458999999999999999999986532 236789999999999999999875
No 47
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=2.1e-13 Score=114.02 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=54.7
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--hHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN--KEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~--~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.+||+||||++.. .++..+|+++|++|++++|||++.+. +..+...|..||+||++|+||.+|.
T Consensus 2 ~~yf~llgl~~~f--~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra 67 (166)
T PRK01356 2 QNYFQLLGLPQEY--NIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA 67 (166)
T ss_pred CCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5899999999974 45899999999999999999998753 2234567899999999999999874
No 48
>PHA03102 Small T antigen; Reviewed
Probab=99.40 E-value=4.6e-13 Score=110.69 Aligned_cols=61 Identities=28% Similarity=0.438 Sum_probs=53.5
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCcccccC
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 226 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~~ 226 (227)
...+|+||||++++.. |.++||+|||++++++|||++++ .++|++|++||++|+|+.+|..
T Consensus 4 ~~~l~~vLGl~~~A~~--s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 4 SKELMDLLGLPRSAWG--NLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred HHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhcc
Confidence 4689999999987632 89999999999999999999764 4799999999999999988753
No 49
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=1e-12 Score=110.90 Aligned_cols=64 Identities=22% Similarity=0.370 Sum_probs=54.9
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~----~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++.+ .++..+|+++|++|++++|||++....+ .+.+.+..||+||++|+||.+|.
T Consensus 6 ~dyf~llglp~~f--~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra 73 (176)
T PRK03578 6 DDHFSLFGLPARF--ALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA 73 (176)
T ss_pred CCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence 6999999999965 4589999999999999999999865322 25566799999999999999885
No 50
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=1e-12 Score=110.74 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=56.7
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~----~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..+||++|||++.. .++..+|+++||+|++++|||++.+.. ..+.+.|..||+||++|+||.+|.
T Consensus 3 ~~~~F~l~~l~~~f--~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 3 TPCHFALFDLQPSF--RLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCChhhhcCcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 36899999999976 668999999999999999999986532 346788999999999999999885
No 51
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.35 E-value=1.3e-12 Score=116.75 Aligned_cols=62 Identities=35% Similarity=0.546 Sum_probs=54.0
Q ss_pred CCchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------ChHHHHHHHHHHHHHHHHhcCcc
Q 027143 157 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG------NKEAAEAKFKEVMVSYEAIKQER 222 (227)
Q Consensus 157 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~------~~~~a~~~F~~I~~AYevL~dp~ 222 (227)
....++|+||||++++ |.++||++||+|+++||||++.+ ..+.|+++|++|++||++|+...
T Consensus 197 ~~~~~ay~vLgv~~~a----s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~r 264 (267)
T PRK09430 197 PTLEDAYKVLGVSESD----DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQK 264 (267)
T ss_pred CcHHhHHHHcCCCCCC----CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4568999999999999 99999999999999999999742 12458999999999999998643
No 52
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.34 E-value=2.5e-12 Score=101.73 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=47.4
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK 219 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~ 219 (227)
..++|+||||++++ |.+||+++||+|++++|||+.++ ...|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~A----s~~eIkkaYRrLa~~~HPDkgGs-----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTA----SKERIREAHKQLMLRNHPDNGGS-----TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHh
Confidence 47999999999999 99999999999999999999643 568899999999995
No 53
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.34 E-value=1.4e-12 Score=129.18 Aligned_cols=60 Identities=38% Similarity=0.619 Sum_probs=55.9
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|||+||||++++ +..+||++||+|+++||||++++ ..+..+|++|++||++|+||.+|.
T Consensus 2 ~DYYeVLGVs~dA----S~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa 61 (871)
T TIGR03835 2 RDYYEVLGIDRDA----DEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRA 61 (871)
T ss_pred CChhHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHH
Confidence 5899999999999 99999999999999999999987 447889999999999999999885
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.30 E-value=2.4e-12 Score=118.43 Aligned_cols=63 Identities=32% Similarity=0.543 Sum_probs=58.2
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--hHHHHHHHHHHHHHHHHhcCcccccC
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN--KEAAEAKFKEVMVSYEAIKQERKDMN 226 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~--~~~a~~~F~~I~~AYevL~dp~kR~~ 226 (227)
.|||+||||.+++ ++.||.+|||++|.+||||.+.+. ++.|+++|..|-.|-+||+||.+|..
T Consensus 394 RDYYKILGVkRnA----sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq 458 (504)
T KOG0624|consen 394 RDYYKILGVKRNA----SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ 458 (504)
T ss_pred chHHHHhhhcccc----cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence 6999999999999 999999999999999999999875 44699999999999999999998863
No 55
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.3e-11 Score=116.08 Aligned_cols=62 Identities=35% Similarity=0.519 Sum_probs=57.7
Q ss_pred CchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 158 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 158 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
...|+|.||||+.+. +.++||+.||++|+..|||||.. +.|++.|+.|+.||++|+|+.+|.
T Consensus 233 ~~~daYsvlGl~~d~----sd~~lKk~Yrk~A~LVhPDKn~~--~~A~Eafk~Lq~Afevig~~~kR~ 294 (490)
T KOG0720|consen 233 NILDAYSALGLPSDC----SDADLKKNYRKKAMLVHPDKNMI--PRAEEAFKKLQVAFEVIGDSVKRK 294 (490)
T ss_pred cCCCchhhcCCCCCC----CHHHHHHHHHhhceEeCCCccCC--hhHHHHHHHHHHHHHHhcchhhhh
Confidence 367999999999998 99999999999999999999986 448999999999999999999885
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.1e-11 Score=109.67 Aligned_cols=61 Identities=30% Similarity=0.562 Sum_probs=55.8
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..|+|+||||.+++ +..||.+|||+||++||||++++.. +.+.|+.|-.||++|+|...|.
T Consensus 32 ~enCYdVLgV~Rea----~KseIakAYRqLARrhHPDr~r~~e--~k~~F~~iAtayeilkd~e~rt 92 (329)
T KOG0722|consen 32 AENCYDVLGVAREA----NKSEIAKAYRQLARRHHPDRNRDPE--SKKLFVKIATAYEILKDNETRT 92 (329)
T ss_pred chhHHHHhhhhhhc----cHHHHHHHHHHHHHHhCCcccCCch--hhhhhhhhhcccccccchhhHH
Confidence 47999999999999 9999999999999999999998743 5789999999999999987764
No 57
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.4e-11 Score=111.23 Aligned_cols=63 Identities=40% Similarity=0.622 Sum_probs=59.2
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..|+|.|||+...+ +..|||++||++++.+|||++.....+++.+|++|-+||.||+||.+|.
T Consensus 372 Rkd~ykilGi~~~a----s~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~ 434 (486)
T KOG0550|consen 372 RKDWYKILGISRNA----SDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRV 434 (486)
T ss_pred hhhHHHHhhhhhhc----ccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 46999999999999 9999999999999999999998876779999999999999999999875
No 58
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=6.2e-11 Score=99.86 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=56.5
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC----hHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~----~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
+.|||++|||++.. .++...|++.|+.|.+++|||++... +..+.+....||+||.+|+||.+|.
T Consensus 1 ~~nyF~lf~lp~~F--~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 1 MNNPFALFDLPVDF--QLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred CCChHHhcCCCCCC--CCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 46899999999975 67999999999999999999998553 2346778899999999999999885
No 59
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.5e-11 Score=105.37 Aligned_cols=63 Identities=41% Similarity=0.673 Sum_probs=56.3
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..|+|+||+|.+++ +..+|++||+++++++|||+++.....++.+|++|.+||++|+|+.+|.
T Consensus 2 ~~d~~~~l~i~~~a----s~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~ 64 (306)
T KOG0714|consen 2 GKDYYKILGIARSA----SEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRK 64 (306)
T ss_pred cccHHHHhCccccc----cHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhh
Confidence 36899999999988 8889999999999999999988764456669999999999999999875
No 60
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.2e-10 Score=96.54 Aligned_cols=62 Identities=26% Similarity=0.431 Sum_probs=58.3
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCcccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD 224 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR 224 (227)
..++|+||.|.+.. +.++||+.||+|++..|||||+++.+.|...|--|..||..|-|+..|
T Consensus 52 nLNpfeVLqIdpev----~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~r 113 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEV----TDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIR 113 (250)
T ss_pred ccChHHHHhcCCCC----CHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 36899999999998 999999999999999999999999888999999999999999998754
No 61
>PHA02624 large T antigen; Provisional
Probab=99.02 E-value=4.5e-10 Score=109.98 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=52.5
Q ss_pred chhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 159 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 159 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
..++|+||||++++- .+..+||+|||+++++||||++++ +++|++|+.||++|+|+.++.
T Consensus 10 ~~elyelLGL~~~A~--gs~~eIKkAYRkLAkkyHPDKgGd-----eekfk~Ln~AYevL~d~~k~~ 69 (647)
T PHA02624 10 SKELMDLLGLPMAAW--GNLPLMRKAYLRKCKEYHPDKGGD-----EEKMKRLNSLYKKLQEGVKSA 69 (647)
T ss_pred HHHHHHHcCCCCCCC--CCHHHHHHHHHHHHHHHCcCCCCc-----HHHHHHHHHHHHHHhcHHHhh
Confidence 469999999998652 389999999999999999999754 579999999999999987764
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.94 E-value=4.8e-10 Score=105.72 Aligned_cols=62 Identities=26% Similarity=0.528 Sum_probs=56.7
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG----NKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~----~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
-|+|+||||+.++ +..+||++||+|+++|||||.+. .+.+.++++++|++||..|+|...|.
T Consensus 98 fDPyEILGI~~~t----s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~re 163 (610)
T COG5407 98 FDPYEILGIDQDT----SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRE 163 (610)
T ss_pred CChHHhhcccCCC----cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5999999999999 99999999999999999999754 36678999999999999999998775
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.93 E-value=2.1e-09 Score=89.24 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCC----hHHHHHHHHHHHHHHHHhcCccccc
Q 027143 175 PYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 175 ~~t~~eIKkAYR~lakk~HPDk~~~~----~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.++..+|+++|++|++++|||+++.. +..+...|..||+||++|+||.+|.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra 56 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA 56 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence 46899999999999999999997543 2347889999999999999999885
No 64
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=7.2e-08 Score=98.44 Aligned_cols=63 Identities=24% Similarity=0.405 Sum_probs=51.8
Q ss_pred cCCCchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCc
Q 027143 155 ESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 221 (227)
Q Consensus 155 ~~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp 221 (227)
...+..+.|+||.|+-+-..+=+.+.||++|++||.+|||||||. ..++|..||+||+.|...
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE----GRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE----GREMFERVNKAYELLSSE 1338 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch----HHHHHHHHHHHHHHHHHH
Confidence 344567999999998763222244889999999999999999997 578999999999999844
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4e-07 Score=81.63 Aligned_cols=65 Identities=22% Similarity=0.431 Sum_probs=53.0
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG-NKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~-~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
.|+|.+|||+.-. ...+..+|.+++++.+.+||||+... ........|+.|+.||+||+|+.+|.
T Consensus 43 ~DlYa~lgLskyR-~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~ 108 (379)
T COG5269 43 VDLYALLGLSKYR-TKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRL 108 (379)
T ss_pred hhHHHHhchHhhh-cCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHh
Confidence 6999999999753 33478888999999999999999721 11226789999999999999998874
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.5e-06 Score=76.47 Aligned_cols=57 Identities=21% Similarity=0.493 Sum_probs=49.9
Q ss_pred CchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH-HhcC
Q 027143 158 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE-AIKQ 220 (227)
Q Consensus 158 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYe-vL~d 220 (227)
....+|.||||..++ +.++++.+|.+|++++|||...... ..+.|++|.+||. ||+.
T Consensus 45 ~~~e~fril~v~e~~----~adevr~af~~lakq~hpdsgs~~a--daa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 45 KIMECFRILGVEEGA----DADEVREAFHDLAKQVHPDSGSEEA--DAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHhcccccC----chhHHHHHHHHHHHHcCCCCCCccc--cHHHHHHHHHHHHHHHHH
Confidence 356899999999999 9999999999999999999987633 5678999999998 6653
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.1e-05 Score=61.38 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=47.2
Q ss_pred CchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCcc
Q 027143 158 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 222 (227)
Q Consensus 158 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp~ 222 (227)
+..+.-.||||.++. +.+.||.++|++....|||+.++.-- -.+||+|+++|....
T Consensus 54 sr~EA~lIL~v~~s~----~k~KikeaHrriM~~NHPD~GGSPYl-----AsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 54 SRREAALILGVTPSL----DKDKIKEAHRRIMLANHPDRGGSPYL-----ASKINEAKDLLEGTS 109 (112)
T ss_pred chHHHHHHhCCCccc----cHHHHHHHHHHHHHcCCCcCCCCHHH-----HHHHHHHHHHHhccc
Confidence 345788999999988 99999999999999999999987432 235999999997543
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00013 Score=60.57 Aligned_cols=66 Identities=20% Similarity=0.401 Sum_probs=53.9
Q ss_pred CchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CChHHHHHHHHHHHHHHHHhcCccccc
Q 027143 158 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ----GNKEAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 158 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~----~~~~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
...+||.+||..... .+++.-++--|....++.|||+.. .+..-|.+...+||+||.+|+||-.|+
T Consensus 6 ~~~~ff~~Fg~e~~~--~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA 75 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSF--KIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARA 75 (168)
T ss_pred hHHHHHHHhccccCC--CCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 347999999988865 457777787999999999999952 223457888999999999999998875
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00056 Score=57.43 Aligned_cols=55 Identities=31% Similarity=0.463 Sum_probs=47.7
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C----hHHHHHHHHHHHHHHHHh
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG--N----KEAAEAKFKEVMVSYEAI 218 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~--~----~~~a~~~F~~I~~AYevL 218 (227)
.+.|.+||+.... +..+|+++|+++..++|||+-.. . -+.+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~----~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKA----DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhh----hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999 99999999999999999999522 1 235889999999999865
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0024 Score=53.57 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=47.8
Q ss_pred hhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHhcCccccc
Q 027143 162 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM 225 (227)
Q Consensus 162 ~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~----~~a~~~F~~I~~AYevL~dp~kR~ 225 (227)
++.++|++..+ ....+.++..|+.+.+.+|||+..... ..+.+.+..++.||.+|++|..|.
T Consensus 3 ~~~~~~~~~~f--~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra 68 (174)
T COG1076 3 GFVLFGLPRAF--QIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRA 68 (174)
T ss_pred cccccccHHHH--HHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45566666644 346777899999999999999985432 225678999999999999998764
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.00 E-value=0.01 Score=57.09 Aligned_cols=44 Identities=30% Similarity=0.389 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHHHHh
Q 027143 175 PYTEAEIKTAFRAKAKEFHPDQNQGN------KEAAEAKFKEVMVSYEAI 218 (227)
Q Consensus 175 ~~t~~eIKkAYR~lakk~HPDk~~~~------~~~a~~~F~~I~~AYevL 218 (227)
.++.+.||++||+.++..||||.++. +-.|++.|--+.+|+...
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 35899999999999999999998654 123555666666666544
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.75 E-value=0.028 Score=45.37 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=38.6
Q ss_pred CCCchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCc
Q 027143 156 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 221 (227)
Q Consensus 156 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~~~~~a~~~F~~I~~AYevL~dp 221 (227)
..++.....||+|++.. +.++|.+.|..|-...+|++.++- -.-.+|..|.+.|..+
T Consensus 54 ~Mtl~EA~~ILnv~~~~----~~eeI~k~y~~Lf~~Nd~~kGGSf-----YLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 54 GMTLDEARQILNVKEEL----SREEIQKRYKHLFKANDPSKGGSF-----YLQSKVFRAKERLEQE 110 (127)
T ss_dssp ---HHHHHHHHT--G------SHHHHHHHHHHHHHHT-CCCTS-H-----HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCcc----CHHHHHHHHHHHHhccCCCcCCCH-----HHHHHHHHHHHHHHHH
Confidence 45677999999999977 999999999999999999998762 2234566666666543
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=92.70 E-value=0.4 Score=33.27 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=26.2
Q ss_pred CchhhhhhhccCCCCCCCCCHHHHHHHHHHHHH
Q 027143 158 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAK 190 (227)
Q Consensus 158 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lak 190 (227)
+..++|++|||+++. +.+.|-.+|.....
T Consensus 3 ~~~~Ay~~Lgi~~~~----~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 3 DVEEAYEILGIDEDT----DDDFIISAFQSKVN 31 (62)
T ss_pred CHHHHHHHhCcCCCC----CHHHHHHHHHHHHH
Confidence 457899999999988 99999999999888
No 74
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=82.14 E-value=2.7 Score=33.08 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHHHHhcCcc
Q 027143 176 YTEAEIKTAFRAKAKEFHPDQNQGN---KEAAEAKFKEVMVSYEAIKQER 222 (227)
Q Consensus 176 ~t~~eIKkAYR~lakk~HPDk~~~~---~~~a~~~F~~I~~AYevL~dp~ 222 (227)
++..+++.+.|.+-++.|||..... ++.-++-++.|+.-.+.|..+.
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 3778999999999999999987544 3334566888888888888754
No 75
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=72.49 E-value=1.8 Score=27.56 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=16.1
Q ss_pred HHHHHHHHhHhhhhccccc
Q 027143 33 FLFGLIGATATTFALSRPQ 51 (227)
Q Consensus 33 ~~~~~i~~~~~~~~~~~~q 51 (227)
.|+|+|-.|++|+.|+++.
T Consensus 9 iVLGlipvTl~GlfvaAyl 27 (37)
T CHL00008 9 IVLGLIPITLAGLFVTAYL 27 (37)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 5789999999999997754
No 76
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=71.21 E-value=2 Score=27.32 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.0
Q ss_pred HHHHHHHHhHhhhhccccc
Q 027143 33 FLFGLIGATATTFALSRPQ 51 (227)
Q Consensus 33 ~~~~~i~~~~~~~~~~~~q 51 (227)
.|+|+|-.|++|+.|+++.
T Consensus 9 iVLGlipiTl~GlfvaAyl 27 (37)
T PRK00665 9 IVLGLIPVTLAGLFVAAWN 27 (37)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 5789999999999997754
No 77
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=68.92 E-value=20 Score=24.85 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=21.5
Q ss_pred HHHHHHHHHhHhhhhccccccccccCCCCCccchhHHHHH--HHHHHHHHHHHHHH
Q 027143 32 VFLFGLIGATATTFALSRPQSSWKGASGSSFRSSFQEEAW--KRYNRRMREEYEEE 85 (227)
Q Consensus 32 ~~~~~~i~~~~~~~~~~~~qrg~~~t~~~~~~~a~~e~a~--~r~~~r~~~~~~e~ 85 (227)
..+++|||+|+.+.++.. . .++ -.|+++.+++|+++
T Consensus 16 ~tV~~Lig~T~~~g~~~~-----------------~-~~y~~~~~~r~~~~~~~e~ 53 (59)
T PF14880_consen 16 TTVLGLIGFTVYGGGLTV-----------------Y-TVYSYFKYNRRRRAEWIER 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHHHH
Confidence 356777777776655522 1 122 56677777777766
No 78
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=67.21 E-value=5.3 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.4
Q ss_pred ccccchhHHHHHHHHHHHHhHh
Q 027143 22 QEKADVKLWGVFLFGLIGATAT 43 (227)
Q Consensus 22 ~~~g~~k~~~~~~~~~i~~~~~ 43 (227)
-+.||.|.+|+++..+||..|-
T Consensus 16 tkrgfykligclvvmfigiivm 37 (41)
T PF13121_consen 16 TKRGFYKLIGCLVVMFIGIIVM 37 (41)
T ss_pred ehhhHHHHHHHHHHHHHHHHhe
Confidence 5779999999999999998764
No 79
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=66.19 E-value=3.2 Score=26.49 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.6
Q ss_pred HHHHHHHHhHhhhhccccc
Q 027143 33 FLFGLIGATATTFALSRPQ 51 (227)
Q Consensus 33 ~~~~~i~~~~~~~~~~~~q 51 (227)
.|+|+|-.|++|+.|+++.
T Consensus 9 iVlGli~vtl~Glfv~Ay~ 27 (37)
T PF02529_consen 9 IVLGLIPVTLAGLFVAAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 5789999999999887754
No 80
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=65.51 E-value=6.3 Score=27.28 Aligned_cols=24 Identities=17% Similarity=-0.136 Sum_probs=19.6
Q ss_pred ccchhHHHHHHHHHHHHhHhhhhc
Q 027143 24 KADVKLWGVFLFGLIGATATTFAL 47 (227)
Q Consensus 24 ~g~~k~~~~~~~~~i~~~~~~~~~ 47 (227)
+.|.+|+-+|+++.+++.++++.+
T Consensus 2 kkF~~G~l~G~~~t~aa~a~av~~ 25 (54)
T PF11240_consen 2 KKFGKGFLTGVAATLAAIAGAVFT 25 (54)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHH
Confidence 468899999999988888777665
No 81
>PF09333 ATG_C: ATG C terminal domain; InterPro: IPR015412 Eukaryotes have developed an evolutionarily conserved process, termed autophagy, to survive starvation conditions. The vacuole or lysosome mediates the turnover and recycling of non-essential intracellular material for re-use in critical biosynthetic reactions. ATG2 (also known as Apg2) is required for the formation and/or completion of cytosolic sequestering vesicles that are needed for vacuolar import through both the Cvt pathway and autophagy, as well as for the specific degradation of peroxisomes. Apg2 is a peripheral membrane protein that localises to the previously identified perivacuolar compartment that contains Apg9 []. This entry represents the C-terminal domain of Apg2 and related proteins.
Probab=65.24 E-value=2 Score=32.78 Aligned_cols=36 Identities=14% Similarity=-0.042 Sum_probs=31.0
Q ss_pred ccchhHHHHHHHHHHHHhHhhhhccccc--cccccCCC
Q 027143 24 KADVKLWGVFLFGLIGATATTFALSRPQ--SSWKGASG 59 (227)
Q Consensus 24 ~g~~k~~~~~~~~~i~~~~~~~~~~~~q--rg~~~t~~ 59 (227)
.|+++|++-+|+++|.-|+.|+.=+.+. .|+.|+-.
T Consensus 49 ~g~~~gv~kgvp~~vvkP~iG~~ea~s~~l~Gi~N~l~ 86 (98)
T PF09333_consen 49 KGFVKGVGKGVPGAVVKPMIGATEAVSKTLQGIRNQLD 86 (98)
T ss_pred HHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999877766 68888644
No 82
>COG2879 Uncharacterized small protein [Function unknown]
Probab=50.70 E-value=27 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 027143 184 AFRAKAKEFHPDQNQGNKEAAEAKFKEVMVS 214 (227)
Q Consensus 184 AYR~lakk~HPDk~~~~~~~a~~~F~~I~~A 214 (227)
.|-.-.++.|||+.+-.. ++.|++-++|
T Consensus 27 nYVehmr~~hPd~p~mT~---~EFfrec~da 54 (65)
T COG2879 27 NYVEHMRKKHPDKPPMTY---EEFFRECQDA 54 (65)
T ss_pred HHHHHHHHhCcCCCcccH---HHHHHHHHHh
Confidence 578889999999998643 5778777665
No 83
>PRK11677 hypothetical protein; Provisional
Probab=49.50 E-value=1.4e+02 Score=24.23 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhHhhhhccc
Q 027143 30 WGVFLFGLIGATATTFALSR 49 (227)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~~ 49 (227)
|-+.|+|||+..|.|+.++.
T Consensus 3 W~~a~i~livG~iiG~~~~R 22 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77788888888888888866
No 84
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=46.88 E-value=17 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHhHhhhhc
Q 027143 27 VKLWGVFLFGLIGATATTFAL 47 (227)
Q Consensus 27 ~k~~~~~~~~~i~~~~~~~~~ 47 (227)
-|.+|+|-||+|++-.+.++|
T Consensus 76 wklmG~GaLgvigig~aalgv 96 (112)
T PF07439_consen 76 WKLMGMGALGVIGIGGAALGV 96 (112)
T ss_pred HHHhccchhhhhhHhHHHHHh
Confidence 478899999999998888887
No 85
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=45.42 E-value=33 Score=31.61 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhHhhhhccccccccccCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 027143 29 LWGVFLFGLIGATATTFALSRPQSSWKGASGSSFRSSFQEEAWKRYNRRMREEYEEE 85 (227)
Q Consensus 29 ~~~~~~~~~i~~~~~~~~~~~~qrg~~~t~~~~~~~a~~e~a~~r~~~r~~~~~~e~ 85 (227)
.++-|++||||.|+..+.+|+ .||.-||+...+..++.
T Consensus 13 rl~~galgLvGGp~Gl~ml~A-------------------gA~Y~~yQ~~EQAr~~A 50 (301)
T PF06120_consen 13 RLLSGALGLVGGPPGLVMLGA-------------------GAWYYFYQNAEQARQEA 50 (301)
T ss_pred HHHHhHHHhhcchHHHHHHHH-------------------HHHHHHHHHHHHHHHHH
Confidence 456688899999998887754 45655666666644433
No 86
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=45.04 E-value=13 Score=18.44 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhc
Q 027143 207 KFKEVMVSYEAIK 219 (227)
Q Consensus 207 ~F~~I~~AYevL~ 219 (227)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4778888998874
No 87
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=43.70 E-value=1.6e+02 Score=25.65 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHhHhhhhccccc--ccccc
Q 027143 27 VKLWGVFLFGLIGATATTFALSRPQ--SSWKG 56 (227)
Q Consensus 27 ~k~~~~~~~~~i~~~~~~~~~~~~q--rg~~~ 56 (227)
.|.+-+++|-++++||++.+++... .|+.-
T Consensus 68 lklLLiIvFllLTaPVaSHaIARAAyr~Gv~~ 99 (197)
T PRK12585 68 ARVLLAVLFIFLTTPVASHLINRAAYDTGVPL 99 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3666677788889999998887754 45554
No 88
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.67 E-value=48 Score=26.87 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=34.7
Q ss_pred CCchhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 027143 157 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG 199 (227)
Q Consensus 157 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~~~ 199 (227)
.++.....||+|+... +.++|.+.|-.|-....+.|.++
T Consensus 56 iTlqEa~qILnV~~~l----n~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPL----NREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccHHHHhhHhCCCCCC----CHHHHHHHHHHHHhccCcccCcc
Confidence 5677999999999876 99999999999999999988765
No 89
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=37.41 E-value=28 Score=24.84 Aligned_cols=21 Identities=29% Similarity=-0.116 Sum_probs=12.8
Q ss_pred cchhHHHHHHHHHHHHhHhhh
Q 027143 25 ADVKLWGVFLFGLIGATATTF 45 (227)
Q Consensus 25 g~~k~~~~~~~~~i~~~~~~~ 45 (227)
.|+|++|++..++.++.+++.
T Consensus 13 ~Flk~lg~~aaa~~aa~~~~~ 33 (66)
T TIGR02811 13 DLLKGLGVGAAAGAVAAATGR 33 (66)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 688888776654444444443
No 90
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=37.34 E-value=1.3e+02 Score=27.55 Aligned_cols=7 Identities=29% Similarity=0.719 Sum_probs=3.6
Q ss_pred CCCCCCC
Q 027143 12 NPWPSPN 18 (227)
Q Consensus 12 ~~~~~~~ 18 (227)
-+|-.+.
T Consensus 66 ~~W~~P~ 72 (279)
T PF07271_consen 66 QSWFIPV 72 (279)
T ss_pred ccceeee
Confidence 4555554
No 91
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=34.89 E-value=47 Score=21.48 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHhHhhhhc
Q 027143 28 KLWGVFLFGLIGATATTFAL 47 (227)
Q Consensus 28 k~~~~~~~~~i~~~~~~~~~ 47 (227)
..+..+++|+|++|+++.++
T Consensus 10 ~lmN~ll~Gava~~a~~~ly 29 (39)
T PF08802_consen 10 QLMNLLLGGAVAVPAGGMLY 29 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhh
Confidence 46778899999999888765
No 92
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=34.72 E-value=39 Score=26.28 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=22.1
Q ss_pred ccccccchhHHHHHHHHHHHHhHh-hhhccc
Q 027143 20 PQQEKADVKLWGVFLFGLIGATAT-TFALSR 49 (227)
Q Consensus 20 ~~~~~g~~k~~~~~~~~~i~~~~~-~~~~~~ 49 (227)
+-.-+|..|.|.|+|..|+...|+ |+.||.
T Consensus 8 ~~KPsGsL~PWeIfLItLasVvvavGl~aGL 38 (106)
T PF14654_consen 8 EVKPSGSLKPWEIFLITLASVVVAVGLFAGL 38 (106)
T ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999998876553 555554
No 93
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=33.01 E-value=27 Score=26.81 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=19.6
Q ss_pred ccchhHHHHHHHHHHHHhHhhhhccc
Q 027143 24 KADVKLWGVFLFGLIGATATTFALSR 49 (227)
Q Consensus 24 ~g~~k~~~~~~~~~i~~~~~~~~~~~ 49 (227)
+=+++||++|+.+++++...-++++.
T Consensus 63 ~~~f~G~k~Gfaaf~a~v~vEyal~~ 88 (100)
T KOG4631|consen 63 DVFFKGFKWGFAAFVAAVGVEYALES 88 (100)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHh
Confidence 45788999999888887777666643
No 94
>PRK01844 hypothetical protein; Provisional
Probab=32.79 E-value=39 Score=24.74 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHhhhhccc
Q 027143 30 WGVFLFGLIGATATTFALSR 49 (227)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~~ 49 (227)
+++++++||+..|.||.++.
T Consensus 7 I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888754
No 95
>KOG4061 consensus DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 [General function prediction only]
Probab=29.99 E-value=1.3e+02 Score=26.03 Aligned_cols=45 Identities=27% Similarity=0.193 Sum_probs=34.9
Q ss_pred ccccchhHHHHHHHHHHHHhHhhhhccccccccccCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 027143 22 QEKADVKLWGVFLFGLIGATATTFALSRPQSSWKGASGSSFRSSFQEEAWKRYNRRMREEYEEE 85 (227)
Q Consensus 22 ~~~g~~k~~~~~~~~~i~~~~~~~~~~~~qrg~~~t~~~~~~~a~~e~a~~r~~~r~~~~~~e~ 85 (227)
.-.||+-|.|-.|+|-=++.++|+|| .+..=.-||+.+++-.+++
T Consensus 116 ~vagfalGaGTALlg~eaAMACT~AV-------------------EtvIg~HYNdQlr~l~~~~ 160 (217)
T KOG4061|consen 116 NVAGFALGAGTALLGKEAAMACTEAV-------------------ETVIGGHYNDQLRELAEDD 160 (217)
T ss_pred HHHHHHhccchhhhChHHHHHHHHHH-------------------HHHHHHhhhHHHHHHHHhC
Confidence 44689999999999999999999998 2222367899888866654
No 96
>PTZ00478 Sec superfamily; Provisional
Probab=28.88 E-value=22 Score=26.64 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCCCCc-cccccchhHHHHHHHHHHHHhHhhh
Q 027143 14 WPSPNGP-QQEKADVKLWGVFLFGLIGATATTF 45 (227)
Q Consensus 14 ~~~~~~~-~~~~g~~k~~~~~~~~~i~~~~~~~ 45 (227)
|.-|++. +.+...+-++|++|.|+||-.+-.+
T Consensus 37 ctKPdrkEf~kiakat~iGf~imG~IGy~IKLI 69 (81)
T PTZ00478 37 CTKPDAKEYTNIAYACSVGFFIMGFIGYSIKLV 69 (81)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 3444443 3777788899999999999776543
No 97
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=28.82 E-value=34 Score=23.67 Aligned_cols=23 Identities=13% Similarity=-0.073 Sum_probs=15.2
Q ss_pred ccccchhHHHHHHHHHHHHhHhh
Q 027143 22 QEKADVKLWGVFLFGLIGATATT 44 (227)
Q Consensus 22 ~~~g~~k~~~~~~~~~i~~~~~~ 44 (227)
..+..++|+|+|+.++++..+.-
T Consensus 23 ~~~~~fpG~~~G~aaf~~~v~~E 45 (57)
T PF08122_consen 23 FFKNMFPGFGIGFAAFAVYVAVE 45 (57)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHH
Confidence 34667788888877666554443
No 98
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=28.67 E-value=65 Score=19.28 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 027143 177 TEAEIKTAFRAKAKEFHP 194 (227)
Q Consensus 177 t~~eIKkAYR~lakk~HP 194 (227)
..++.+.+.|+.|+.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 357788999999999993
No 99
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=28.57 E-value=37 Score=23.90 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=19.6
Q ss_pred ccccchhHHHHHHHHHHHHhHhhhh
Q 027143 22 QEKADVKLWGVFLFGLIGATATTFA 46 (227)
Q Consensus 22 ~~~g~~k~~~~~~~~~i~~~~~~~~ 46 (227)
.....+-|+|+++.|+||-.+-.+.
T Consensus 33 ~~ia~~~~iG~~i~G~iGf~Ikli~ 57 (61)
T PRK09400 33 LLVAKVTGLGILLIGLIGFIIYLIM 57 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788899999999998775543
No 100
>PRK00523 hypothetical protein; Provisional
Probab=27.49 E-value=51 Score=24.14 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhHhhhhccc
Q 027143 30 WGVFLFGLIGATATTFALSR 49 (227)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~~ 49 (227)
+++++++||+..|.||.++.
T Consensus 8 I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36667778888888887744
No 101
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=26.14 E-value=29 Score=24.09 Aligned_cols=28 Identities=32% Similarity=0.656 Sum_probs=20.2
Q ss_pred hhhhhhhccCCCCCCCCCHHHH-HHHHHHHHHHhCCC
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEI-KTAFRAKAKEFHPD 195 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eI-KkAYR~lakk~HPD 195 (227)
..++++||+++ +++ ......+....|||
T Consensus 6 ~~~~~i~G~~~--------~~~~~~~~~~~~~~ihpd 34 (91)
T PF08447_consen 6 DNFYEIFGYSP--------EEIGKPDFEEWLERIHPD 34 (91)
T ss_dssp THHHHHHTS-H--------HHHTCBEHHHHHHHB-TT
T ss_pred HHHHHHhCCCH--------HHhccCCHHHHHhhcCHH
Confidence 47899999944 556 56677788899998
No 102
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.02 E-value=97 Score=25.59 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHHHHhHhhhhccccc--cccccCCC
Q 027143 26 DVKLWGVFLFGLIGATATTFALSRPQ--SSWKGASG 59 (227)
Q Consensus 26 ~~k~~~~~~~~~i~~~~~~~~~~~~q--rg~~~t~~ 59 (227)
..|.+-+++|-+|++||++.+++... .|+.-++.
T Consensus 70 ~~k~lLii~fl~lTaPVaah~iaRAayr~g~~~~~~ 105 (145)
T PRK12586 70 SVRLLLSLVFINLTSPVGMHLIARAAYRNGAYMYRK 105 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34777888999999999999997744 57776655
No 103
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=25.81 E-value=49 Score=21.10 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=11.4
Q ss_pred HHHHHhHhhhhccccccccccCCC
Q 027143 36 GLIGATATTFALSRPQSSWKGASG 59 (227)
Q Consensus 36 ~~i~~~~~~~~~~~~qrg~~~t~~ 59 (227)
.+||+.++++.++. |+.|++.
T Consensus 6 ~l~CLA~aavF~~a---~va~a~~ 26 (37)
T PF11131_consen 6 FLICLAAAAVFTAA---GVANAPA 26 (37)
T ss_pred HHHHHHHHHHHHhh---cccCCch
Confidence 45666666665544 4445544
No 104
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=24.44 E-value=1.2e+02 Score=20.66 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhHhhhhccc----cccccccCCCCCcc
Q 027143 30 WGVFLFGLIGATATTFALSR----PQSSWKGASGSSFR 63 (227)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~~~----~qrg~~~t~~~~~~ 63 (227)
.|++++++.++.+++..+.. .|+-++-|.-|+|-
T Consensus 5 lg~i~l~lL~ll~~~~~~~~e~~r~qgpiFDTRPSPFN 42 (52)
T PF08105_consen 5 LGAIFLALLGLLALAGSVLTEAHRRQGPIFDTRPSPFN 42 (52)
T ss_pred HHHHHHHHHHHHHhccccccchhhccCCCCCCCCCCCC
Confidence 36777777777775544422 12467777777664
No 105
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=23.47 E-value=1.3e+02 Score=20.76 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=20.7
Q ss_pred hhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 027143 160 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQN 197 (227)
Q Consensus 160 ~d~Y~ILGl~~~a~~~~t~~eIKkAYR~lakk~HPDk~ 197 (227)
.-||+||+++.-. +|=+..|-+ .++-||+..
T Consensus 11 nAFY~vl~~~nLt------eeQrn~yI~-~lKddPs~s 41 (54)
T PF02216_consen 11 NAFYEVLHMPNLT------EEQRNGYIQ-SLKDDPSRS 41 (54)
T ss_dssp HHHHHHHCSTTS-------HHHHHHHHH-HHHH-GCCH
T ss_pred HHHHHHHcCCCcC------HHHHHhHHH-HHhhChHHH
Confidence 4699999998743 555777765 456688864
No 106
>PF14055 NVEALA: NVEALA protein
Probab=22.87 E-value=45 Score=23.34 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHhHhhhhccccc
Q 027143 28 KLWGVFLFGLIGATATTFALSRPQ 51 (227)
Q Consensus 28 k~~~~~~~~~i~~~~~~~~~~~~q 51 (227)
|.++++++++|.+.++++.+-..|
T Consensus 3 K~~~~~~~~~v~~~~ag~~~~~~~ 26 (65)
T PF14055_consen 3 KILKILLFAAVFAAVAGYNVYQSQ 26 (65)
T ss_pred cchHHHHHHHHHhhheeeeEEEec
Confidence 567788888888888888886654
No 107
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=22.85 E-value=48 Score=23.38 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=19.3
Q ss_pred ccccchhHHHHHHHHHHHHhHhhhh
Q 027143 22 QEKADVKLWGVFLFGLIGATATTFA 46 (227)
Q Consensus 22 ~~~g~~k~~~~~~~~~i~~~~~~~~ 46 (227)
.+...+-|+|+++.|+||-.+-.+.
T Consensus 29 ~~iak~t~iG~~i~G~IGf~Ikli~ 53 (61)
T TIGR00327 29 LKVAKVTGIGIIIVGIIGYIIKIIA 53 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778899999999997765543
No 108
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=22.67 E-value=3.6e+02 Score=20.67 Aligned_cols=20 Identities=5% Similarity=-0.011 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHhHhhhhc
Q 027143 28 KLWGVFLFGLIGATATTFAL 47 (227)
Q Consensus 28 k~~~~~~~~~i~~~~~~~~~ 47 (227)
+.|..++++++.+.+.++..
T Consensus 2 ~~~~~~~l~~lvl~L~~~l~ 21 (110)
T PF10828_consen 2 KKYIYIALAVLVLGLGGWLW 21 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444444
No 109
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=22.41 E-value=3e+02 Score=19.78 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHhhhhc
Q 027143 30 WGVFLFGLIGATATTFAL 47 (227)
Q Consensus 30 ~~~~~~~~i~~~~~~~~~ 47 (227)
-|+-|-.++|+|+..+++
T Consensus 15 yafyVWlA~~~tll~l~~ 32 (67)
T COG3114 15 YAFYVWLAVGMTLLPLAV 32 (67)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 366666777777776666
No 110
>PRK14762 membrane protein; Provisional
Probab=21.49 E-value=1.2e+02 Score=17.84 Aligned_cols=16 Identities=38% Similarity=0.683 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHhHh
Q 027143 28 KLWGVFLFGLIGATAT 43 (227)
Q Consensus 28 k~~~~~~~~~i~~~~~ 43 (227)
-+|.+++.-+||+.|.
T Consensus 4 ~lw~i~iifligllvv 19 (27)
T PRK14762 4 ILWAVLIIFLIGLLVV 19 (27)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788888888887553
No 111
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.10 E-value=4.2e+02 Score=20.92 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCC
Q 027143 95 MQSVFNRERNKYKKSYESWRQND 117 (227)
Q Consensus 95 ~~~~~~~ere~~~r~~~~~~~~~ 117 (227)
-.+.+....+.|+.-|.-+..++
T Consensus 55 ta~Ll~~l~~~Y~~l~~Hla~~a 77 (128)
T PF06295_consen 55 TAELLDNLTQDYQKLYQHLAKGA 77 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777666443
Done!