Query 027144
Match_columns 227
No_of_seqs 279 out of 1687
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02883 Branched-chain amino 100.0 8.8E-49 1.9E-53 365.2 18.1 205 12-216 2-208 (384)
2 PLN02259 branched-chain-amino- 100.0 7.9E-47 1.7E-51 352.5 16.0 208 7-216 1-212 (388)
3 PLN02782 Branched-chain amino 100.0 9.2E-44 2E-48 333.3 17.5 163 54-216 63-226 (403)
4 KOG0975 Branched chain aminotr 100.0 3.1E-44 6.7E-49 329.3 13.0 165 52-216 36-200 (379)
5 PLN03117 Branched-chain-amino- 100.0 5.7E-37 1.2E-41 283.0 18.5 162 52-213 11-173 (355)
6 PRK13357 branched-chain amino 100.0 8.9E-33 1.9E-37 255.0 18.6 165 50-214 6-171 (356)
7 TIGR01123 ilvE_II branched-cha 99.9 5.1E-26 1.1E-30 205.8 13.4 130 86-215 1-131 (313)
8 TIGR01122 ilvE_I branched-chai 99.9 3.2E-23 6.9E-28 186.1 13.0 120 86-213 1-123 (298)
9 COG0115 IlvE Branched-chain am 99.9 6E-23 1.3E-27 183.7 13.9 121 85-216 4-125 (284)
10 PRK07544 branched-chain amino 99.9 5.5E-23 1.2E-27 184.2 12.6 117 85-213 11-129 (292)
11 PRK12479 branched-chain amino 99.9 1.4E-22 3E-27 182.5 13.8 114 85-210 6-122 (299)
12 PRK06606 branched-chain amino 99.9 1.5E-22 3.3E-27 182.6 13.6 121 85-213 9-131 (306)
13 PRK08320 branched-chain amino 99.9 3.1E-22 6.7E-27 178.7 13.9 116 85-212 5-123 (288)
14 PRK06680 D-amino acid aminotra 99.9 8.5E-22 1.8E-26 176.2 14.5 115 85-211 5-123 (286)
15 cd01557 BCAT_beta_family BCAT_ 99.9 1.3E-21 2.8E-26 174.7 13.7 116 98-213 1-116 (279)
16 cd01558 D-AAT_like D-Alanine a 99.9 1E-21 2.3E-26 173.3 12.6 113 86-210 1-116 (270)
17 PRK13356 aminotransferase; Pro 99.9 2.7E-21 5.8E-26 172.9 13.5 113 85-208 9-124 (286)
18 PRK07650 4-amino-4-deoxychoris 99.9 4E-21 8.6E-26 171.4 14.1 114 85-210 2-118 (283)
19 TIGR01121 D_amino_aminoT D-ami 99.9 4.2E-21 9.1E-26 170.8 13.9 113 85-209 2-118 (276)
20 PLN02845 Branched-chain-amino- 99.9 5.5E-21 1.2E-25 175.5 13.7 113 85-209 43-158 (336)
21 PRK12400 D-amino acid aminotra 99.8 1.7E-20 3.7E-25 168.2 13.4 116 81-207 3-123 (290)
22 PRK07849 4-amino-4-deoxychoris 99.8 8.4E-20 1.8E-24 164.2 13.4 111 85-210 9-124 (292)
23 TIGR03461 pabC_Proteo aminodeo 99.8 1.2E-19 2.7E-24 159.6 12.7 110 86-213 1-112 (261)
24 PRK06092 4-amino-4-deoxychoris 99.8 5.6E-19 1.2E-23 156.1 13.0 110 85-212 2-113 (268)
25 PRK09266 hypothetical protein; 99.8 1.5E-18 3.1E-23 153.6 12.8 110 85-212 5-115 (266)
26 cd01559 ADCL_like ADCL_like: 4 99.8 5.4E-18 1.2E-22 148.3 12.5 95 103-209 1-97 (249)
27 cd00449 PLPDE_IV PyridoxaL 5'- 99.7 1.6E-17 3.5E-22 144.8 13.0 97 103-211 1-100 (256)
28 PRK07546 hypothetical protein; 98.8 6.4E-08 1.4E-12 83.1 10.1 66 110-188 4-69 (209)
29 PF01063 Aminotran_4: Aminotra 98.4 7.6E-07 1.6E-11 76.1 7.3 62 129-197 1-63 (231)
30 PRK07101 hypothetical protein; 98.3 1.5E-06 3.3E-11 73.9 6.8 58 111-184 4-63 (187)
31 KOG3442 Uncharacterized conser 43.2 52 0.0011 26.9 4.6 48 137-188 57-105 (132)
32 COG5475 Uncharacterized small 35.0 36 0.00078 24.1 2.2 24 72-95 26-55 (60)
33 PF05597 Phasin: Poly(hydroxya 26.8 77 0.0017 25.8 3.3 29 136-164 94-123 (132)
34 PF03656 Pam16: Pam16; InterP 23.7 52 0.0011 26.7 1.7 39 138-180 57-96 (127)
35 PF10419 TFIIIC_sub6: TFIIIC s 22.5 86 0.0019 19.8 2.2 19 98-116 5-23 (35)
36 COG1255 Uncharacterized protei 21.9 1.4E+02 0.0031 24.3 3.9 53 114-184 51-104 (129)
No 1
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=8.8e-49 Score=365.20 Aligned_cols=205 Identities=58% Similarity=0.992 Sum_probs=188.9
Q ss_pred HHHH-hhhhhhccccccccCcccchhhhhhhccccccCCCCCCCccccCCCCCCCCCCCcccCCceEEEEecc-ceEEcC
Q 027144 12 CLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKG 89 (227)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~-~~W~nG 89 (227)
.||+ |.|++.++|+++..+.+.++.+++..++...+.......+++.+++||++|+||++|||||++++|.+ ++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~~~ 81 (384)
T PLN02883 2 ALRRCLPQSSTTSSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDKLGFSLVRTDFMFATKSCRDGNFEQG 81 (384)
T ss_pred chhhhccccccchhhhhccccceeccccccccchhhhcccccccccccccCCchhcCcCCeecCceEEEEEcCCCcccCC
Confidence 3566 88999999999999999999998877765445555557777888999999999999999999999876 589999
Q ss_pred eEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCc
Q 027144 90 RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 169 (227)
Q Consensus 90 ~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~w 169 (227)
+|+|+++++|||++++||||||||||||+||+.||++.+|||++|++||++||++|+||.++.++|.++|+++|+.|+.|
T Consensus 82 ~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~w 161 (384)
T PLN02883 82 YLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRW 161 (384)
T ss_pred eEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCccccc
Q 027144 170 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKVAA 216 (227)
Q Consensus 170 vP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~~~g~ 216 (227)
||+.+++++||||+++++++.+|+.++.+++|+|+++|+++|+++|+
T Consensus 162 vp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~ 208 (384)
T PLN02883 162 VPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGT 208 (384)
T ss_pred CCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCc
Confidence 99987789999999999999999998889999999999999998764
No 2
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=7.9e-47 Score=352.51 Aligned_cols=208 Identities=63% Similarity=1.115 Sum_probs=186.7
Q ss_pred HHH-HHHHHH-hhhhhhccccccccCcccchhhhhhhcccc-ccCCCCCCCccccCCCCCCCCCCCcccCCceEEEEecc
Q 027144 7 MIR-NACLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQ-DCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN 83 (227)
Q Consensus 7 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~ 83 (227)
||+ ..+||+ |+..+++ +. ..++.+.++.+++++++.. .+.......+.+.+++||++|+||+++||||++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~td~m~~~~~~~ 78 (388)
T PLN02259 1 MIKTITSLRKTLVLPLHL-HI-RTLQTFAKYNAQAASALREERKKPLYQNGDDVYADLDWDNLGFGLNPADYMYVMKCSK 78 (388)
T ss_pred CccchhhhhhheEeeeeh-hh-hhhhhhhhhccccccccchhhccccccccccccccCCccccCCCCcccCceEEEEECC
Confidence 677 889999 8887776 44 7788888898888776633 23444456677778999999999999999999999975
Q ss_pred -ceEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHH
Q 027144 84 -DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 162 (227)
Q Consensus 84 -~~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~l 162 (227)
++|.||+++|++++.|+|.|++||||||||||||+||.+||++++|||++|++||++||++|+||.++.++|.++|+++
T Consensus 79 ~~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~l 158 (388)
T PLN02259 79 DGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQT 158 (388)
T ss_pred CCeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCcCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCccccc
Q 027144 163 ALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKVAA 216 (227)
Q Consensus 163 V~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~~~g~ 216 (227)
|+.|+.|||+.+++++||||+++++++.+|+.|+.+++++|+++|+++|++.|+
T Consensus 159 v~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g~ 212 (388)
T PLN02259 159 ALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGM 212 (388)
T ss_pred HHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcCc
Confidence 999999999988789999999999888899998888999999999999998764
No 3
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=9.2e-44 Score=333.31 Aligned_cols=163 Identities=71% Similarity=1.340 Sum_probs=153.5
Q ss_pred CccccCCCCCCCCCCCcccCCceEEEEecc-ceEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChh
Q 027144 54 DDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPD 132 (227)
Q Consensus 54 ~~~~~~~~d~~~l~fg~~~td~m~~~~~~~-~~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd 132 (227)
...+..++||++|+||+++||||++++|++ |+|.||+++|++++.|+|.|++||||||||||||+|+++||++++|||+
T Consensus 63 ~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d 142 (403)
T PLN02782 63 EVTELADIDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPE 142 (403)
T ss_pred CCcccccCCccccCCCccccCceEEEEECCCCcEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChH
Confidence 344456899999999999999999999965 5899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCc
Q 027144 133 QNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212 (227)
Q Consensus 133 ~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~ 212 (227)
+|++||++||++|+||.++.|+|.++|+++|+.|+.|||+.+++++||||+++++++.+|+.|+.+++++|+++|+++||
T Consensus 143 ~H~~RL~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~~ 222 (403)
T PLN02782 143 ENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYF 222 (403)
T ss_pred HHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECcccc
Confidence 99999999999999999999999999999999999999998878999999999999999999888899999999999999
Q ss_pred cccc
Q 027144 213 KVAA 216 (227)
Q Consensus 213 ~~g~ 216 (227)
+.|.
T Consensus 223 ~~g~ 226 (403)
T PLN02782 223 KEGV 226 (403)
T ss_pred ccCC
Confidence 7764
No 4
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-44 Score=329.25 Aligned_cols=165 Identities=57% Similarity=1.066 Sum_probs=158.9
Q ss_pred CCCccccCCCCCCCCCCCcccCCceEEEEeccceEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeCh
Q 027144 52 YSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP 131 (227)
Q Consensus 52 ~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~~~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRp 131 (227)
...+.+...+||++|+||.+|||||++++|+.+.|..|+|.|++++++||++.+|||||++||||||||++||++++|||
T Consensus 36 ~~~~~k~~~~d~~~L~fg~~~td~m~~~k~~~~gw~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrP 115 (379)
T KOG0975|consen 36 TQTDEKPAPIDWDELGFGLVFTDHMLTIKWSEDGWSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRP 115 (379)
T ss_pred ccCCCccCcCCHHHhccCCcccceeEEEeccccCcCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecc
Confidence 34466677899999999999999999999997689999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCC
Q 027144 132 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNY 211 (227)
Q Consensus 132 d~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y 211 (227)
+.|+.||++||.|++||.|+.++|.++|++++.+|+.|||+.+++++||||+++++++.+|+.++++++|+|+++|+|+|
T Consensus 116 d~N~~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~y 195 (379)
T KOG0975|consen 116 DQNMDRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPY 195 (379)
T ss_pred hhhHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 027144 212 FKVAA 216 (227)
Q Consensus 212 ~~~g~ 216 (227)
|+.|+
T Consensus 196 f~~g~ 200 (379)
T KOG0975|consen 196 FKSGF 200 (379)
T ss_pred ccccc
Confidence 99974
No 5
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=5.7e-37 Score=283.00 Aligned_cols=162 Identities=65% Similarity=1.263 Sum_probs=148.6
Q ss_pred CCCccccCCCCCCCCCCCcccCCceEEEEeccc-eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeC
Q 027144 52 YSDDESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFR 130 (227)
Q Consensus 52 ~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~~-~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFR 130 (227)
.....+..++||++||||++|||||+.++|.++ +|.||+++|.+++.|++.|+|||||||||||||+|+..||++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~~~m~~~~~~~~~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~ 90 (355)
T PLN03117 11 SKADEKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFR 90 (355)
T ss_pred CCccccccccCccccCCCccccCceEEEEcCCCCeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeC
Confidence 344455577999999999999999999999876 7999999999999999999999999999999999988899988999
Q ss_pred hhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCC
Q 027144 131 PDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGN 210 (227)
Q Consensus 131 pd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~ 210 (227)
+++|++||++||++|+||.++.++|.++|.++++.|+.|||+.+.+.+||||+++++++.+|+.|.+++.++|+++|+++
T Consensus 91 l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~ 170 (355)
T PLN03117 91 PDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGN 170 (355)
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999887778999999998877888887777889999999987
Q ss_pred Ccc
Q 027144 211 YFK 213 (227)
Q Consensus 211 Y~~ 213 (227)
|+.
T Consensus 171 ~~~ 173 (355)
T PLN03117 171 YHK 173 (355)
T ss_pred ccc
Confidence 663
No 6
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=8.9e-33 Score=254.96 Aligned_cols=165 Identities=47% Similarity=0.871 Sum_probs=147.0
Q ss_pred CCCCCccccCCCCCCCCCCCcccCCceEEEEeccceEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEee
Q 027144 50 SAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLF 129 (227)
Q Consensus 50 ~~~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~~~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lF 129 (227)
.+.+....+..+||++||||++.+|||++..|++|.|.||+++|.+++.|++.|+||+||||||||+|+|+..+|++++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f 85 (356)
T PRK13357 6 KPNPTSDEKRAIDWANLGFGYVFTDHMVVIDYKDGKWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLF 85 (356)
T ss_pred CCCcccccccCCCccccCCCccccceeEEEEecCCcccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeee
Confidence 34455566677899999999999999999999999999999999999999999999999999999999998778988999
Q ss_pred ChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCC-CCccEEEEEEEEecCCccccCCCCCcEEEEEEeec
Q 027144 130 RPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPV 208 (227)
Q Consensus 130 Rpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~-~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~ 208 (227)
++++|++||.+||++|+||.++.++|.+++.++++.|..++++. .++.+||||+++++...+|+.+..++.++|++.|.
T Consensus 86 ~l~~Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~ 165 (356)
T PRK13357 86 RPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPV 165 (356)
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEec
Confidence 99999999999999999997799999999999999998776443 33589999999999888888766678999999988
Q ss_pred CCCccc
Q 027144 209 GNYFKV 214 (227)
Q Consensus 209 g~Y~~~ 214 (227)
++|+..
T Consensus 166 ~~~~~~ 171 (356)
T PRK13357 166 GAYFKG 171 (356)
T ss_pred hhhccc
Confidence 776654
No 7
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=99.93 E-value=5.1e-26 Score=205.82 Aligned_cols=130 Identities=55% Similarity=1.008 Sum_probs=117.7
Q ss_pred EEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHh
Q 027144 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (227)
Q Consensus 86 W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~ 165 (227)
|.||+++|.+++.|++.|+||+||||||||||+|+..+|++++|++++|++||.+||++|+||.++.++|.+.++++++.
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~ 80 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA 80 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998889988899999999999999999999988999999999999999
Q ss_pred cCCcCCCCC-CccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCcccc
Q 027144 166 NKRWVPPPG-KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKVA 215 (227)
Q Consensus 166 n~~wvP~~~-~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~~~g 215 (227)
|..++++.. ++.+||||+++++.+.+|+.+.+.+.++|++.|.++|+..|
T Consensus 81 ~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 131 (313)
T TIGR01123 81 NKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGG 131 (313)
T ss_pred ccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhcccc
Confidence 998877544 35799999999998888888766788999999887776544
No 8
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=99.90 E-value=3.2e-23 Score=186.06 Aligned_cols=120 Identities=30% Similarity=0.542 Sum_probs=106.4
Q ss_pred EEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHHH
Q 027144 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (227)
Q Consensus 86 W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV~ 164 (227)
|.||+++|.+++.|++.|+||+||||||||||+|.+.|| .++|++++|++||.+||++|+|+.+ +.++|.+.+.++++
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~-~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~ 79 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCc-ceeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999955443 3689999999999999999999976 89999999999999
Q ss_pred hcCCcCCCCCCccEEEEEEEEecCCccccCCCC--CcEEEEEEeecCCCcc
Q 027144 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFK 213 (227)
Q Consensus 165 ~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~--~~~f~I~~sP~g~Y~~ 213 (227)
.|.. .++|||++++++.+.+|+.|.. ++.++|+++|.+.|+.
T Consensus 80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~ 123 (298)
T TIGR01122 80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLG 123 (298)
T ss_pred hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccC
Confidence 9875 5799999999999888887633 6788999999877654
No 9
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.90 E-value=6e-23 Score=183.68 Aligned_cols=121 Identities=39% Similarity=0.602 Sum_probs=107.2
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
.|.||+++|.+++.+++.|+++||||+||||+|+| +| .+||+++|++||++||++|+||.+ +.+++......++
T Consensus 4 ~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~---~g--~~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~ 78 (284)
T COG0115 4 IWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAY---NG--KLFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLL 78 (284)
T ss_pred EeECCEEccCcccccCcccceeccccceeEEEEEe---CC--cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 77 689999999999999999999998 6666666666666
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCccccc
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKVAA 216 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~~~g~ 216 (227)
+.|+. . ..+|+||+++++++.+|+.+..++.+.|+++|+++|++.+.
T Consensus 79 ~~~~~-~-----~~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 125 (284)
T COG0115 79 AKNNL-V-----PGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGR 125 (284)
T ss_pred HhhCC-C-----CceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCccc
Confidence 65553 2 23999999999999999999668999999999999999764
No 10
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=99.89 E-value=5.5e-23 Score=184.23 Aligned_cols=117 Identities=25% Similarity=0.422 Sum_probs=103.8
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
.|.||+++|.+++.|++.|+||+||||||||+|+| +| ++|++++|++||++||++|+|+.+ +.+.|.+.+.+++
T Consensus 11 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 85 (292)
T PRK07544 11 IWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAY---GG--KIFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETL 85 (292)
T ss_pred EEECCEEEEhHHCccChhhhHhhhcceeEEeeEee---CC--cccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 99 578999999999999999999977 8999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCCCC-CcEEEEEEeecCCCcc
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP-EYTFLVFASPVGNYFK 213 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~-~~~f~I~~sP~g~Y~~ 213 (227)
+.|.. .++|||++++++.+.+|+.+.. ...++|...|.++++.
T Consensus 86 ~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~ 129 (292)
T PRK07544 86 AANGL-------TDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFD 129 (292)
T ss_pred HhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccC
Confidence 99975 5789999999999888877554 4567777777665553
No 11
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=99.89 E-value=1.4e-22 Score=182.54 Aligned_cols=114 Identities=26% Similarity=0.440 Sum_probs=103.4
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
.|.||+++|.+++.|++.|+||+||||||||||+| +| ++|++++|++||.+||++|+|+.+ +.+++.+.+.+++
T Consensus 6 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 80 (299)
T PRK12479 6 IYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSY---GG--NVFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTL 80 (299)
T ss_pred EEECCEEeEHHHCccccccchhheeeeEEEEEEEE---CC--EecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 99 578999999999999999999877 7999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCCCC--CcEEEEEEeecCC
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGN 210 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~--~~~f~I~~sP~g~ 210 (227)
+.|.. .++|||++++++.+.+|+.+.. ++.++|++.|...
T Consensus 81 ~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~ 122 (299)
T PRK12479 81 QKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKL 122 (299)
T ss_pred HHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEccc
Confidence 99865 5789999999998888887654 5688888888754
No 12
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=99.89 E-value=1.5e-22 Score=182.64 Aligned_cols=121 Identities=30% Similarity=0.522 Sum_probs=107.6
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
.|.||+++|.+++.|++.|+||+||||||||+|++.+.+|. .+|++++|++||++||++|+|+.+ +.++|.+.+.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 87 (306)
T PRK06606 9 IWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGP-AIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVV 87 (306)
T ss_pred EEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCC-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999555443 489999999999999999999977 7899999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCCCC-CcEEEEEEeecCCCcc
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP-EYTFLVFASPVGNYFK 213 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~-~~~f~I~~sP~g~Y~~ 213 (227)
+.|.. .++|||++++++.+.+|+.+.. ++.++|.+.|.++|+.
T Consensus 88 ~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~ 131 (306)
T PRK06606 88 RKNNL-------KSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLG 131 (306)
T ss_pred HhcCC-------CCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccC
Confidence 99875 5799999999998888887654 6788899998877653
No 13
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=99.88 E-value=3.1e-22 Score=178.72 Aligned_cols=116 Identities=28% Similarity=0.455 Sum_probs=103.9
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
.|.||++++..++.|++.|+|++||||||||||++ +| .+|++++|++||.+||++|+|+.+ +.+.+.+++.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~---~g--~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 79 (288)
T PRK08320 5 IYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAY---NG--RVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETL 79 (288)
T ss_pred EEECCEEEEHHHCcccccchhhhhcceEEEEEEEE---CC--EeecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 99 578999999999999999999877 7999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCCCC--CcEEEEEEeecCCCc
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYF 212 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~--~~~f~I~~sP~g~Y~ 212 (227)
++|+. .+++||++++++.+.+|+.|.. .+.+++++.|..++.
T Consensus 80 ~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (288)
T PRK08320 80 RKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYP 123 (288)
T ss_pred HhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCC
Confidence 99865 5789999999988888887653 567888888876544
No 14
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=99.88 E-value=8.5e-22 Score=176.25 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=101.5
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
+|.||+++|.+++.|++.|++++||||||||+|+| +| ++|++++|++||.+||++|+|+.+ +.++|.+.+.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~ 79 (286)
T PRK06680 5 AYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVR---DG--KLVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLRELI 79 (286)
T ss_pred EEECCEEEEHHHCcccccccccceeeEEEEEEEEE---CC--EEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 99 467889999999999999999976 8999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccC-CC--CCcEEEEEEeecCCC
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLA-PA--PEYTFLVFASPVGNY 211 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~-ps--~~~~f~I~~sP~g~Y 211 (227)
++|+. ..++||+.++++.+..|.. |. .++.++|++.|.++|
T Consensus 80 ~~~~~-------~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~ 123 (286)
T PRK06680 80 RRNRV-------REGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFA 123 (286)
T ss_pred HHcCC-------CceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEecccc
Confidence 99875 5679999999887666654 32 367899999998753
No 15
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=99.87 E-value=1.3e-21 Score=174.69 Aligned_cols=116 Identities=54% Similarity=0.999 Sum_probs=102.4
Q ss_pred ccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCCcc
Q 027144 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGS 177 (227)
Q Consensus 98 ~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~~s 177 (227)
+|++.|+||+||||||||+|+|...||+.++|++++|++||.+||++|+|+.++.++|.+.+.++++.|+.|.|..+..+
T Consensus 1 ~i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~ 80 (279)
T cd01557 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGAS 80 (279)
T ss_pred CcCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence 47899999999999999999995555655799999999999999999999966999999999999999999977665678
Q ss_pred EEEEEEEEecCCccccCCCCCcEEEEEEeecCCCcc
Q 027144 178 LYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK 213 (227)
Q Consensus 178 lYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~~ 213 (227)
+|||++++++.+.+|+.+..+++++|++.|.++++.
T Consensus 81 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~ 116 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFK 116 (279)
T ss_pred EEEEEEEEeccccCCcCCCCccEEEEEEEEcccccc
Confidence 999999999988888876666889999999877664
No 16
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=99.87 E-value=1e-21 Score=173.28 Aligned_cols=113 Identities=16% Similarity=0.257 Sum_probs=95.8
Q ss_pred EEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHHH
Q 027144 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (227)
Q Consensus 86 W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV~ 164 (227)
|.||+++|.+++.|++.|++|+||||||||||++ +| ++|++++|++||.+||++|+||.+ +.+++.+.+.++++
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 75 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVY---NG--KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA 75 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEE---CC--EEecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999 99 578999999999999999999966 89999999999999
Q ss_pred hcCCcCCCCCCccEEEEEEEEecCCccccCCCC--CcEEEEEEeecCC
Q 027144 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGN 210 (227)
Q Consensus 165 ~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~--~~~f~I~~sP~g~ 210 (227)
.|.. ...++|+.++++.+..|+.+.. .+.++|++.|.++
T Consensus 76 ~~~~-------~~~~~~~~~t~g~~~~~~~~~~~~~~~~~i~~~~~~~ 116 (270)
T cd01558 76 KNEG-------GEGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPL 116 (270)
T ss_pred HcCC-------CCceEEEEEEeCCCccCCCCCCCCCCEEEEEEEecCC
Confidence 9864 3344555557776666665532 5678888888764
No 17
>PRK13356 aminotransferase; Provisional
Probab=99.86 E-value=2.7e-21 Score=172.90 Aligned_cols=113 Identities=21% Similarity=0.350 Sum_probs=94.8
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
.|.||++++.+.+.|++.|+||+||||||||+|+| +| ++|++++|++||.+||++|+|+.+ +.+++.+.+.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~---~g--~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i 83 (286)
T PRK13356 9 TFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAF---EG--VTPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREGL 83 (286)
T ss_pred EEECCEEcchhhcccccccchhhhcceeEEEEEEe---cC--CCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 89 468899999999999999999865 8999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCcc-ccCCCC-CcEEEEEEeec
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPIL-GLAPAP-EYTFLVFASPV 208 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~l-Gv~ps~-~~~f~I~~sP~ 208 (227)
+.|.. ..++|||++++++.+.. |+.+.+ ...+++...+.
T Consensus 84 ~~~~~------~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~ 124 (286)
T PRK13356 84 KRFDP------DTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEA 124 (286)
T ss_pred HHcCC------CCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEcc
Confidence 99864 24689999999986644 444433 34445555543
No 18
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=99.86 E-value=4e-21 Score=171.37 Aligned_cols=114 Identities=22% Similarity=0.331 Sum_probs=101.4
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
+|.||+++|..++.+++.|+|++||||||||||+| +|+ +|++++|++||.+||+.|+|+.+ +.+.+.+.+.+++
T Consensus 2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~ 76 (283)
T PRK07650 2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIY---NGH--PFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLL 76 (283)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 994 68899999999999999999976 7999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCCCC--CcEEEEEEeecCC
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGN 210 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~--~~~f~I~~sP~g~ 210 (227)
+.++. .++|||++++++.+.+|+.+.. .+.++|+.+|..+
T Consensus 77 ~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~ 118 (283)
T PRK07650 77 EKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAP 118 (283)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCC
Confidence 98764 5789999999987777776543 5788888888743
No 19
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=99.86 E-value=4.2e-21 Score=170.82 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=97.1
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
.|.||+++|.+++.|++.|++|+||||||||||+| +| .+|++++|++||++||++|+|+.+ +.|.+.+.|.+++
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~---~g--~~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~ 76 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVY---NG--KLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV 76 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CC--EEeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 99 578999999999999999999976 8999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCC-CC--CcEEEEEEeecC
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAP-AP--EYTFLVFASPVG 209 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~p-s~--~~~f~I~~sP~g 209 (227)
+.|.. .+++||+.++++....|..+ .. .+.++++..|.+
T Consensus 77 ~~~~~-------~~~~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (276)
T TIGR01121 77 EKNNL-------NTGHVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVP 118 (276)
T ss_pred HhcCC-------CceEEEEEEEcCCCCcCCCCCCCCCCcEEEEEEeccc
Confidence 99875 56889999988765555442 22 356667777654
No 20
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=99.85 E-value=5.5e-21 Score=175.49 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=100.6
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
+|.||+++|.+++.|++.|+||+||||||||||++ +| .+|++++|++||.+||++|+|+.+ +.+++.+.+.+++
T Consensus 43 ~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~---~G--~~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i 117 (336)
T PLN02845 43 SVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIR---DG--HLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTV 117 (336)
T ss_pred EEECCEEccHHHCcccccccceeecceEEEEEEEE---CC--EEcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 99 578999999999999999999977 8999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCCC--CCcEEEEEEeecC
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVG 209 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps--~~~~f~I~~sP~g 209 (227)
++|.. .+++||+.++++.+.+++.+. ..+.+++++.|.+
T Consensus 118 ~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~ 158 (336)
T PLN02845 118 AASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDT 158 (336)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEcccc
Confidence 99865 578999999998776666543 3577888887754
No 21
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=99.84 E-value=1.7e-20 Score=168.17 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=96.3
Q ss_pred eccceEEcCeEeeCC--CcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHH
Q 027144 81 CSNDYFEKGRLSRYG--KIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFID 157 (227)
Q Consensus 81 ~~~~~W~nG~ivp~~--~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~ 157 (227)
|+.-+|.||+++|.+ +..|++.|+||+||||||||||+| +|+ +|++++|++||.+||++|+|+.+ +.+++.+
T Consensus 3 ~~~~~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~ 77 (290)
T PRK12400 3 YERFVLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLY---KGN--FHLLDPHITRLYRSMEEIELTLPFSKAELIT 77 (290)
T ss_pred cccEEEECCEEechHHcCceeccccchhhhcceEEEEEEEE---CCE--ecccHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 333489999999999 455999999999999999999999 994 67789999999999999999977 7999999
Q ss_pred HHHHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCC--CcEEEEEEee
Q 027144 158 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASP 207 (227)
Q Consensus 158 ~i~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~--~~~f~I~~sP 207 (227)
.+.++++.|+. ...++||+.++++.+..|..++. .+.+++++.|
T Consensus 78 ~l~~~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~ 123 (290)
T PRK12400 78 LLYKLIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITK 123 (290)
T ss_pred HHHHHHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEec
Confidence 99999999863 13678999999987666665432 4566666654
No 22
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=99.82 E-value=8.4e-20 Score=164.24 Aligned_cols=111 Identities=21% Similarity=0.202 Sum_probs=95.5
Q ss_pred eEEcC-----eEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHH
Q 027144 85 YFEKG-----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAV 159 (227)
Q Consensus 85 ~W~nG-----~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i 159 (227)
+|.|| +++|.+++.|++.|+|++||||||||||++ +|+ ++.+++|++||.+||++|+|+.++.++|.++|
T Consensus 9 ~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~---~g~--i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i 83 (292)
T PRK07849 9 VTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVR---DGR--PCNLEAHLERLARSAALLDLPEPDLDRWRRAV 83 (292)
T ss_pred EEECCCCccceEechHHCCccchhcchhccceEEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 79999 999999999999999999999999999999 995 67789999999999999999999999999999
Q ss_pred HHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCC
Q 027144 160 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGN 210 (227)
Q Consensus 160 ~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~ 210 (227)
.++++.+.. +...++||++++++.+..+ ++.++|.+.|+..
T Consensus 84 ~~~v~~~~~-----~~~~~~iRl~v~~g~~~~~-----~~~~~i~~~p~~~ 124 (292)
T PRK07849 84 ELAIEEWRA-----PEDEAALRLVYSRGRESGG-----APTAWVTVSPVPE 124 (292)
T ss_pred HHHHHHhcC-----CCCCeEEEEEEeCCCCCCC-----CCeEEEEEeecCc
Confidence 999998741 1146899999998765332 4567777777653
No 23
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=99.82 E-value=1.2e-19 Score=159.56 Aligned_cols=110 Identities=25% Similarity=0.353 Sum_probs=93.6
Q ss_pred EEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHh
Q 027144 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (227)
Q Consensus 86 W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~ 165 (227)
|.||+. +..|++.|+||+||||||||||++ +|+ +|++++|++||.+||+.|+||.++.+++.+.+.++++.
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~ 71 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVR---NGK--IELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAG 71 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEE---CCE--eccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Confidence 789995 678999999999999999999999 994 68889999999999999999998999999999999987
Q ss_pred cCCcCCCCCCccEEEEEEEEecCCccccCCC--CCcEEEEEEeecCCCcc
Q 027144 166 NKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFK 213 (227)
Q Consensus 166 n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps--~~~~f~I~~sP~g~Y~~ 213 (227)
+. +++||+.++++....|+.+. .++.++|.+.|+.+++.
T Consensus 72 ~~---------~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 112 (261)
T TIGR03461 72 YS---------LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYS 112 (261)
T ss_pred CC---------CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccCh
Confidence 63 37899999987665565543 35678888888876553
No 24
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=99.80 E-value=5.6e-19 Score=156.11 Aligned_cols=110 Identities=25% Similarity=0.327 Sum_probs=92.8
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~ 164 (227)
.|.||++ ...|++.|++++||||||||||++ +|+ +|++++|++||++||++|+||.++.+.+.+.+.+++.
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~~ 72 (268)
T PRK06092 2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVR---DGQ--VSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLAA 72 (268)
T ss_pred EEECCcC----cCccCccccccccccceeeEEEEE---CCe--eccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Confidence 5899986 478999999999999999999999 994 6788999999999999999998887888888888773
Q ss_pred hcCCcCCCCCCccEEEEEEEEecCCccccCCCC--CcEEEEEEeecCCCc
Q 027144 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYF 212 (227)
Q Consensus 165 ~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~--~~~f~I~~sP~g~Y~ 212 (227)
. . .+++||+.++++.+..|+.+.. ++.++|.+.|+.++.
T Consensus 73 ~--~-------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~ 113 (268)
T PRK06092 73 E--L-------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHY 113 (268)
T ss_pred h--C-------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccC
Confidence 2 1 3589999999988777776654 568888888887655
No 25
>PRK09266 hypothetical protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=153.64 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=90.7
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~ 164 (227)
+|.||+++|.+++. ++++||||||||||++ +| ++|++++|++||.+||++|+++.++.+++.+.+.++++
T Consensus 5 ~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~---~g--~~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~~ 74 (266)
T PRK09266 5 IELNGRPATAEDLA-----ALALANYGHFTSMQVR---DG--RVRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAALA 74 (266)
T ss_pred EEECCEECCHHHhh-----hHhhccceEEEEEEEE---CC--EEcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 79999999998876 4999999999999999 99 46789999999999999997776789999999999994
Q ss_pred hcCCcCCCCCCccEEEEEEEEecCCccccCCCC-CcEEEEEEeecCCCc
Q 027144 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP-EYTFLVFASPVGNYF 212 (227)
Q Consensus 165 ~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~-~~~f~I~~sP~g~Y~ 212 (227)
. .. .++|||++++++.+.+|..+.. ++.++|.+.|..++.
T Consensus 75 ~-~~-------~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~ 115 (266)
T PRK09266 75 A-GP-------ADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGP 115 (266)
T ss_pred c-CC-------CcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCC
Confidence 3 22 4689999999876667764432 577888888765443
No 26
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=99.76 E-value=5.4e-18 Score=148.34 Aligned_cols=95 Identities=32% Similarity=0.467 Sum_probs=82.6
Q ss_pred CcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCCccEEEEE
Q 027144 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 182 (227)
Q Consensus 103 d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP 182 (227)
|+||+||||||||||+| +| .+|++++|++||.+||++|+||.++.+++.+.+.++++.|.. .+++||+
T Consensus 1 Drg~~~GdgvFEt~~~~---~g--~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~ 68 (249)
T cd01559 1 DRGFAYGDGVFETMRAL---DG--RLFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL 68 (249)
T ss_pred CCcccccceeEEEEEEE---CC--EEccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence 78999999999999999 99 478899999999999999999966999999999999999875 5689999
Q ss_pred EEEecCCccccCCC--CCcEEEEEEeecC
Q 027144 183 LLVGSGPILGLAPA--PEYTFLVFASPVG 209 (227)
Q Consensus 183 ~v~~~~~~lGv~ps--~~~~f~I~~sP~g 209 (227)
.++++.+..|+.+. .++.++|.+.|..
T Consensus 69 ~v~rg~~~~~~~~~~~~~~~~~i~~~~~~ 97 (249)
T cd01559 69 ILSRGPGGRGYAPSVCPGPALYVSVIPLP 97 (249)
T ss_pred EEecCCCCCCCCCCCCCCCEEEEEeccCC
Confidence 99988766666544 3578888888765
No 27
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=99.75 E-value=1.6e-17 Score=144.76 Aligned_cols=97 Identities=47% Similarity=0.756 Sum_probs=85.4
Q ss_pred CcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCC-CCHHHHHHHHHHHHHhcCCcCCCCCCccEEEE
Q 027144 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-PSIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181 (227)
Q Consensus 103 d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~-~~~e~l~~~i~~lV~~n~~wvP~~~~~slYIR 181 (227)
|++++||||||||||++ +| ++|++++|++||.+||+.|+|+. ++.+.+.+.+.++++.+.. .+++||
T Consensus 1 drg~~~GdgvFEt~r~~---~g--~~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir 68 (256)
T cd00449 1 DRGLHYGDGVFEGLRAG---KG--RLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR 68 (256)
T ss_pred CceeeccceEEEEEEEc---Cc--EEEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence 78999999999999999 99 57889999999999999999995 5999999999999998754 579999
Q ss_pred EEEEecCCccccCCC--CCcEEEEEEeecCCC
Q 027144 182 PLLVGSGPILGLAPA--PEYTFLVFASPVGNY 211 (227)
Q Consensus 182 P~v~~~~~~lGv~ps--~~~~f~I~~sP~g~Y 211 (227)
+.++++...+|..+. .++.++|++.|.++|
T Consensus 69 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (256)
T cd00449 69 PLLTRGVGGLGVAPPPSPEPTFVVFASPVGAY 100 (256)
T ss_pred EEEEecccccCCCCCCCCCcEEEEEEeecccc
Confidence 999999877787643 368899999988765
No 28
>PRK07546 hypothetical protein; Provisional
Probab=98.75 E-value=6.4e-08 Score=83.09 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=53.9
Q ss_pred CeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEEEecC
Q 027144 110 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 188 (227)
Q Consensus 110 dgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v~~~~ 188 (227)
-++||||+++ ++| .++++++|++||.+||+.|++|.+ .+.+.+.+.++++.+ . +.++||.++.+++
T Consensus 4 ~~lfETi~~~--~~G--~~~~l~~Hl~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~-~-------~~~~vrl~~~~~g 69 (209)
T PRK07546 4 FELIETLRWE--PGA--GFPRLDRHLARLERSARALGFPCD-PAAVRAKLAEAVAGA-Q-------GPLRLRLTLARDG 69 (209)
T ss_pred ccEEEEEEEe--CCC--CcccHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcc-C-------CCeEEEEEEcCCC
Confidence 3699999987 256 467789999999999999999975 678889999988763 2 4578999988764
No 29
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=98.41 E-value=7.6e-07 Score=76.12 Aligned_cols=62 Identities=27% Similarity=0.398 Sum_probs=52.6
Q ss_pred eChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCC
Q 027144 129 FRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP 197 (227)
Q Consensus 129 FRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~ 197 (227)
|++++|++||.+||+.+ ++.+ +.+.+.+.+.++++.+.. .++.|||++++++.+..+..+..
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~ 63 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPE 63 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECS
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCcc
Confidence 78999999999999999 5544 889999999999999872 15679999999998877776654
No 30
>PRK07101 hypothetical protein; Provisional
Probab=98.31 E-value=1.5e-06 Score=73.91 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=45.4
Q ss_pred eEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCC-C-CHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEE
Q 027144 111 GLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-P-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 184 (227)
Q Consensus 111 gvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~-~-~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v 184 (227)
++|||||++ +|+ ++++++|++||.+||+.+++.. + +.+.+.+.+.++ . ++..++|.++
T Consensus 4 ~l~ETir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~----~-------~~~~r~rl~~ 63 (187)
T PRK07101 4 PLFETIAIE---DGE--IQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL----Q-------EGLVRCRIDY 63 (187)
T ss_pred cceEEEeee---CCe--eccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh----c-------CCCEEEEEEe
Confidence 699999999 994 6889999999999999998865 3 777777777554 1 1346677766
No 31
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.20 E-value=52 Score=26.92 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=39.9
Q ss_pred HHHHhHhhcCCCCC-CHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEEEecC
Q 027144 137 RLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 188 (227)
Q Consensus 137 RL~~Sa~rL~mp~~-~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v~~~~ 188 (227)
=|+.++..|++..+ +.|++.+--..|.+.|.. ..|++.||.--+++.-
T Consensus 57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdk----skGGSFYLQSKVfRAk 105 (132)
T KOG3442|consen 57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDK----SKGGSFYLQSKVFRAK 105 (132)
T ss_pred cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCc----ccCcceeehHHHHHHH
Confidence 36789999999977 999999999999999976 1357999988777654
No 32
>COG5475 Uncharacterized small protein [Function unknown]
Probab=34.96 E-value=36 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=17.9
Q ss_pred cCCceEEEEeccc------eEEcCeEeeCC
Q 027144 72 PADYMYTMKCSND------YFEKGRLSRYG 95 (227)
Q Consensus 72 ~td~m~~~~~~~~------~W~nG~ivp~~ 95 (227)
-+|.|+.|+|-+| ++...+++|+.
T Consensus 26 ss~Gmy~C~Wf~g~g~~~~~F~ed~Lvp~~ 55 (60)
T COG5475 26 SSDGMYECRWFDGYGVKREAFHEDELVPGE 55 (60)
T ss_pred ccCCeEEEEEecCCCcccccccccceeccc
Confidence 3579999999765 47777777754
No 33
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=26.79 E-value=77 Score=25.81 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=23.1
Q ss_pred HHHHHhHhhcCCCCC-CHHHHHHHHHHHHH
Q 027144 136 IRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (227)
Q Consensus 136 ~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV~ 164 (227)
+|+.++..+|++|.- +.+.|..-|.+|-+
T Consensus 94 ~rV~~aL~rLgvPs~~dv~~L~~rId~L~~ 123 (132)
T PF05597_consen 94 ERVARALNRLGVPSRKDVEALSARIDQLTA 123 (132)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 379999999999976 77777777776644
No 34
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=23.73 E-value=52 Score=26.66 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=28.0
Q ss_pred HHHhHhhcCCCCC-CHHHHHHHHHHHHHhcCCcCCCCCCccEEE
Q 027144 138 LQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYI 180 (227)
Q Consensus 138 L~~Sa~rL~mp~~-~~e~l~~~i~~lV~~n~~wvP~~~~~slYI 180 (227)
|...+..|+++.. +.|++.+--+.|.+.|.. ..|||.||
T Consensus 57 l~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~----~kGGSfYL 96 (127)
T PF03656_consen 57 LDEARQILNVKEELSREEIQKRYKHLFKANDP----SKGGSFYL 96 (127)
T ss_dssp HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C----CCTS-HHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHhccCC----CcCCCHHH
Confidence 4688899999884 999999999999999975 13467776
No 35
>PF10419 TFIIIC_sub6: TFIIIC subunit; InterPro: IPR019481 This conserved domain is found in a family of proteins that function as subunits of transcription factor IIIC (TFIIIC) []. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. The yeast proteins in this entry are fused to phosphoglycerate mutase domain.
Probab=22.47 E-value=86 Score=19.75 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=15.8
Q ss_pred ccCcCCcceeecCeEEeEE
Q 027144 98 ELSPSSGVLNYGQGLFEGM 116 (227)
Q Consensus 98 ~I~~~d~gL~YGdgvFEgl 116 (227)
-|+-....+.||+.+|+|-
T Consensus 5 gLdt~~Pil~i~~~vf~G~ 23 (35)
T PF10419_consen 5 GLDTENPILQIGNQVFEGE 23 (35)
T ss_pred ccCCCCCEEEECCEEEEEE
Confidence 4666778999999999985
No 36
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.95 E-value=1.4e+02 Score=24.26 Aligned_cols=53 Identities=26% Similarity=0.493 Sum_probs=32.6
Q ss_pred eEEEEEEcCCCeEEeeChhhHHHHHHHhHhhc-CCCCCCHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEE
Q 027144 114 EGMKAYRKEDGQLVLFRPDQNAIRLQTGAERM-CMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 184 (227)
Q Consensus 114 EglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL-~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v 184 (227)
||+|++++ . +|.|..- +.+.|+.+ .|-+| -++...|.++.++-+ ..+||+|+.
T Consensus 51 ~g~~~v~D--D---itnP~~~---iY~~A~lIYSiRpp--pEl~~~ildva~aVg--------a~l~I~pL~ 104 (129)
T COG1255 51 EGLRFVVD--D---ITNPNIS---IYEGADLIYSIRPP--PELQSAILDVAKAVG--------APLYIKPLT 104 (129)
T ss_pred ccceEEEc--c---CCCccHH---HhhCccceeecCCC--HHHHHHHHHHHHhhC--------CCEEEEecC
Confidence 78888864 2 5655432 34455543 34333 367777777777654 369999964
Done!