Query 027144
Match_columns 227
No_of_seqs 279 out of 1687
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dth_A Branched-chain amino ac 100.0 9.2E-46 3.2E-50 342.3 14.9 172 45-216 12-185 (372)
2 3dtg_A Branched-chain amino ac 100.0 4.8E-45 1.6E-49 336.9 15.2 181 37-217 4-186 (372)
3 3uzo_A Branched-chain-amino-ac 100.0 2.7E-44 9.1E-49 330.8 16.9 162 54-215 17-179 (358)
4 2coi_A Branched chain aminotra 100.0 3.3E-42 1.1E-46 319.6 19.6 160 56-215 37-197 (386)
5 4dqn_A Putative branched-chain 100.0 8E-42 2.7E-46 312.8 18.0 157 59-215 7-164 (345)
6 2a1h_A Branched chain aminotra 100.0 3.5E-40 1.2E-44 303.5 19.9 160 56-215 17-177 (365)
7 3u0g_A Putative branched-chain 100.0 1.5E-28 5.2E-33 223.3 12.4 126 81-213 26-154 (328)
8 1iye_A Branched-chain amino ac 99.9 2.9E-25 9.8E-30 198.6 14.1 122 85-214 9-133 (309)
9 2eiy_A ILVE, branched-chain am 99.9 2.7E-25 9.4E-30 198.8 13.1 122 85-214 8-132 (308)
10 3daa_A D-amino acid aminotrans 99.9 7.1E-25 2.4E-29 194.4 14.5 115 85-211 3-121 (277)
11 3sno_A Hypothetical aminotrans 99.9 1.2E-22 4.1E-27 183.6 13.2 115 85-212 17-136 (315)
12 1i2k_A 4-amino-4-deoxychorisma 99.9 2.4E-22 8.3E-27 176.4 12.7 110 85-212 2-113 (269)
13 2xpf_A 4-amino-4-deoxychorisma 99.9 6.8E-22 2.3E-26 176.2 13.2 109 85-212 24-134 (292)
14 3lul_A 4-amino-4-deoxychorisma 99.9 9.2E-22 3.2E-26 173.8 13.9 104 85-204 6-112 (272)
15 3csw_A BCAT, putative branched 99.8 8.2E-19 2.8E-23 155.8 7.6 111 74-212 9-120 (285)
16 2zgi_A Putative 4-amino-4-deox 99.8 1.2E-18 4.2E-23 151.3 8.1 94 85-196 2-97 (246)
17 3ceb_A D-aminoacid aminotransf 99.5 1.1E-14 3.7E-19 121.9 5.4 69 107-188 2-74 (194)
18 3qqm_A MLR3007 protein; struct 99.4 4.7E-13 1.6E-17 114.8 11.3 82 107-212 13-94 (221)
19 2r18_A Capsid assembly protein 28.6 45 0.0015 26.3 3.3 39 130-168 80-118 (139)
20 3zed_D Capsid protein VP3; vir 20.3 1E+02 0.0035 26.3 4.1 39 131-169 151-189 (242)
No 1
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=9.2e-46 Score=342.29 Aligned_cols=172 Identities=38% Similarity=0.725 Sum_probs=157.8
Q ss_pred cccCCCCCCCccccCCCCCCCCCCCcccCCceEEEEeccc-eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCC
Q 027144 45 QDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123 (227)
Q Consensus 45 ~~~~~~~~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~~-~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~d 123 (227)
+.+.+...+..++..++||++||||++|||||++++|+++ +|.||+++|++++.|+|.|++||||||||||||+|+++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~W~~g~i~p~~~~~i~~~d~gl~yGdgvFEglkay~~~d 91 (372)
T 3dth_A 12 FTVSANTNPATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWAD 91 (372)
T ss_dssp CEECCCSSCCCHHHHHHHHHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTT
T ss_pred eeEeecCCCCCchhcccchhccCCCCccCCceEEEEEcCCCeEECCcEeehHhcccCccccHhhcCcEEEEEEEEEECCC
Confidence 4444444455555567899999999999999999999984 899999999999999999999999999999999999999
Q ss_pred CeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCC-CCccEEEEEEEEecCCccccCCCCCcEEE
Q 027144 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFL 202 (227)
Q Consensus 124 G~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~-~~~slYIRP~v~~~~~~lGv~ps~~~~f~ 202 (227)
|++++|||++|++||++||++|+||.++.++|.++|+++|+.|+.|||+. .++++||||+++++++.+|+.|+.+++|+
T Consensus 92 G~i~lFrl~~H~~RL~~Sa~~L~mp~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYiRp~~~~~~~~~G~~p~~~~~~~ 171 (372)
T 3dth_A 92 GSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYL 171 (372)
T ss_dssp SCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCSSCSCCSEEEEE
T ss_pred CcEeecCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEcCCCcCCcCCCCCeEEE
Confidence 99999999999999999999999997899999999999999999999997 45799999999999999999998899999
Q ss_pred EEEeecCCCccccc
Q 027144 203 VFASPVGNYFKVAA 216 (227)
Q Consensus 203 I~~sP~g~Y~~~g~ 216 (227)
|+++|+++||+.|.
T Consensus 172 i~~~p~~~y~~~g~ 185 (372)
T 3dth_A 172 LIASPAGAYFKGGI 185 (372)
T ss_dssp EEEEEESCSSSCSS
T ss_pred EEEeeCchhhccCC
Confidence 99999999998763
No 2
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=4.8e-45 Score=336.91 Aligned_cols=181 Identities=36% Similarity=0.691 Sum_probs=158.3
Q ss_pred hhhhhccccccCCCCCCCccccCCCCCCCCCCCcccCCceEEEEecc-ceEEcCeEeeCCCcccCcCCcceeecCeEEeE
Q 027144 37 SQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEG 115 (227)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~fg~~~td~m~~~~~~~-~~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEg 115 (227)
.+.++++.+.+.+++.+.+....+--++|||||++|||||++++|+. ++|.||+++|+++++|||.+++||||||||||
T Consensus 4 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~fg~~~tdhm~~~~~~~~~gW~ng~ivp~~~~~i~p~~~~lhYG~gvFEg 83 (372)
T 3dtg_A 4 HHNSGPLEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEG 83 (372)
T ss_dssp ------CCCEECCCSSCCCHHHHHHHHHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEECC
T ss_pred ccCCcceEEEEeCCCCCCCcchhhhHhhccCCCCCccceeEEEEECCCCcEeCCEEEEchhceeCcchhhhhccceeeee
Confidence 34445557777766554443222222789999999999999999974 48999999999999999999999999999999
Q ss_pred EEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCC-ccEEEEEEEEecCCccccC
Q 027144 116 MKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGLA 194 (227)
Q Consensus 116 lKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~-~slYIRP~v~~~~~~lGv~ 194 (227)
||+|+++||++.+|||++|++||++||++|+||.++.|++.++++++++.|..|||..++ .++||||+++++++.+|+.
T Consensus 84 iraY~~~dG~i~~Fr~~~h~~Rl~~Sa~~l~iP~~~~e~~~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~ 163 (372)
T 3dtg_A 84 LKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVR 163 (372)
T ss_dssp EEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSCS
T ss_pred EEEEECCCCeEEeeCchHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCcC
Confidence 999999999999999999999999999999999999999999999999999999999876 6999999999999999999
Q ss_pred CCCCcEEEEEEeecCCCcccccC
Q 027144 195 PAPEYTFLVFASPVGNYFKVAAF 217 (227)
Q Consensus 195 ps~~~~f~I~~sP~g~Y~~~g~~ 217 (227)
|+.++.++|+++|+++|+.+|..
T Consensus 164 p~~~~~~~ii~~p~~~~~~~~~~ 186 (372)
T 3dtg_A 164 PSNEYRYLLIASPAGAYFKGGIK 186 (372)
T ss_dssp CCSEEEEEEEEEEESCSSTTSSS
T ss_pred CCCCceeeeEecccccccccCcc
Confidence 99999999999999999987754
No 3
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=2.7e-44 Score=330.82 Aligned_cols=162 Identities=43% Similarity=0.791 Sum_probs=149.3
Q ss_pred CccccCCCCCCCCCCCcccCCceEEEEeccceEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhh
Q 027144 54 DDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQ 133 (227)
Q Consensus 54 ~~~~~~~~d~~~l~fg~~~td~m~~~~~~~~~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~ 133 (227)
.+++.+++||++|+||++|||||++++|++|.|.||+++|++++.|++.|++||||||||||||+|+++||++++|||++
T Consensus 17 ~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~ng~i~p~~~~~i~~~d~gl~yGdgvFE~ir~y~~~dG~i~lfrl~~ 96 (358)
T 3uzo_A 17 QAKKLADIDWSTLGFSYIRTDLRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYRCADGSINLFRPDQ 96 (358)
T ss_dssp -------CCGGGCCSCCCCCSCEEEEEEETTEECCCEEESCCEEEEETTCHHHHSCCEEECCEEEEECTTSCEEECCHHH
T ss_pred ccccccCCCcccCCCCCcccCeeEEEEEeCCcEECCEEeEcccceeChHHcceecCcEEEEEEEEEECCCCcEeecCHHH
Confidence 44456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCC-ccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCc
Q 027144 134 NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212 (227)
Q Consensus 134 H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~-~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~ 212 (227)
|++||++||++|+||.++.++|.++|+++|+.|+.|||+.+. +++||||+++++++.+|+.|+.++.++|+++|+++||
T Consensus 97 Hl~RL~~Sa~~L~ip~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~~~~~~i~~~P~~~~~ 176 (358)
T 3uzo_A 97 NAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYF 176 (358)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCSEEEEEEEEEEECCSS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccCCCCCeEEEEEEecChhhh
Confidence 999999999999999779999999999999999999999755 6899999999999999999988899999999999999
Q ss_pred ccc
Q 027144 213 KVA 215 (227)
Q Consensus 213 ~~g 215 (227)
+.|
T Consensus 177 ~~g 179 (358)
T 3uzo_A 177 KGG 179 (358)
T ss_dssp CSS
T ss_pred hcC
Confidence 876
No 4
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=3.3e-42 Score=319.57 Aligned_cols=160 Identities=33% Similarity=0.587 Sum_probs=148.3
Q ss_pred cccCCCCCCCCCCCcccCCceEEEEeccc-eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhH
Q 027144 56 ESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQN 134 (227)
Q Consensus 56 ~~~~~~d~~~l~fg~~~td~m~~~~~~~~-~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H 134 (227)
.++.++||++|+||++|||||+.++|+++ +|.||+++|++++.|+|.|++||||||||||||+|+++||+|++|||++|
T Consensus 37 ~~~~~~~~~~~~fg~~~td~m~~~~~~~~~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEg~k~y~g~dg~i~~frld~H 116 (386)
T 2coi_A 37 ILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLN 116 (386)
T ss_dssp SCCCCCCCC-CCTTCCCCSEEEEEEEETTTEECCCEEEECCCEEECTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHH
T ss_pred CcccCCCccccCCccccccceEEEEeCCCcEEECCEEeecccCccCcccchhhcCceeEEEEEEEeCCCCceeecCHHHH
Confidence 34667899999999999999999999887 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCccc
Q 027144 135 AIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKV 214 (227)
Q Consensus 135 ~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~~~ 214 (227)
++||++||++|+||.++.++|.++|+++|+.|+.|+|+..+.++||||+++++++.+|+.|+.+++++|+++|+++|++.
T Consensus 117 ~~RL~~Sa~~l~~p~~~~e~~~~~i~~lv~~~~~~vp~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~y~~~ 196 (386)
T 2coi_A 117 MDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSS 196 (386)
T ss_dssp HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCSSSSCEEEEEEEEEECCCSCSCSCCSEEEEEEEEEEECCCC--
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEEECcccccc
Confidence 99999999999999779999999999999999999998656799999999999888999998899999999999999976
Q ss_pred c
Q 027144 215 A 215 (227)
Q Consensus 215 g 215 (227)
|
T Consensus 197 ~ 197 (386)
T 2coi_A 197 G 197 (386)
T ss_dssp -
T ss_pred c
Confidence 6
No 5
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=8e-42 Score=312.76 Aligned_cols=157 Identities=47% Similarity=0.862 Sum_probs=148.8
Q ss_pred CCCCCCCCCCCcccCCceEEEEeccceEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHH
Q 027144 59 DHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRL 138 (227)
Q Consensus 59 ~~~d~~~l~fg~~~td~m~~~~~~~~~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL 138 (227)
+++||++|+||++|||||++++|++|.|.||+++|.+++.|++.|++||||||||||||+|++.||++++|||++|++||
T Consensus 7 ~~~~~~~l~fg~~~td~m~~~~~~~~~w~nG~~vp~~~~~i~~~d~gl~yGdgvFE~ir~~~g~dg~~~~f~l~~Hl~RL 86 (345)
T 4dqn_A 7 VDLDWKNLGFEYHKLPFRYISYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERL 86 (345)
T ss_dssp CCCCGGGCCSCCCCCSCEEEEEEETTEECCCEEESCCSCCCCTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHH
T ss_pred CCCCchhcCCCCcccCceEEEEecCCcEECCEEeEhhhcccCccccccccccEEEEEEEEEeCCCCcccccCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCC-ccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCcccc
Q 027144 139 QTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKVA 215 (227)
Q Consensus 139 ~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~-~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~~~g 215 (227)
++||++|+||.++.++|.++|+++|+.|+.|||+.+. +++||||+++++.+.+|+.|+.+++++|+++|+++|++.+
T Consensus 87 ~~Sa~~L~i~~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~~ 164 (345)
T 4dqn_A 87 QRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGG 164 (345)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSCCCSEEEEEEEEEEECCSCTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCCCCCCeEEEEEEEECccccccC
Confidence 9999999999779999999999999999999998644 5899999999999999999887899999999999998653
No 6
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=3.5e-40 Score=303.46 Aligned_cols=160 Identities=33% Similarity=0.592 Sum_probs=149.5
Q ss_pred cccCCCCC-CCCCCCcccCCceEEEEeccceEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhH
Q 027144 56 ESADHMDW-DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQN 134 (227)
Q Consensus 56 ~~~~~~d~-~~l~fg~~~td~m~~~~~~~~~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H 134 (227)
.++.++|| ++|+||++|||||+.++|++.+|.||+++|++++.|++.|++||||||||||||+|+++||++++|||++|
T Consensus 17 ~~~~~~~~~~~l~fg~~~~d~m~~~~~~~~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEt~r~y~g~dG~i~~f~l~~H 96 (365)
T 2a1h_A 17 KPHKKPGPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLN 96 (365)
T ss_dssp SCCCCCCTTSCCCTTCSCCSEEEEEEEETTEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHH
T ss_pred CccCCCccccccCcCCccccceeeeecccCeEECCEEeEcccceeCccchhhhcCceeEeEEEEEecCCCceeecCHHHH
Confidence 33456778 99999999999999999987779999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCccc
Q 027144 135 AIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKV 214 (227)
Q Consensus 135 ~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~~~ 214 (227)
++||++||++|+||.++.++|.++|.++|+.|+.|+|...+.++||||+++++++.+|+.|+.+++++|+++|+++|+..
T Consensus 97 l~RL~~Sa~~l~~~~~~~~~l~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~ 176 (365)
T 2a1h_A 97 MDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPG 176 (365)
T ss_dssp HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCcEEEEEEEECcccccc
Confidence 99999999999999779999999999999999999997655689999999999989999988889999999999999976
Q ss_pred c
Q 027144 215 A 215 (227)
Q Consensus 215 g 215 (227)
|
T Consensus 177 g 177 (365)
T 2a1h_A 177 G 177 (365)
T ss_dssp S
T ss_pred c
Confidence 6
No 7
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=99.95 E-value=1.5e-28 Score=223.32 Aligned_cols=126 Identities=26% Similarity=0.463 Sum_probs=113.3
Q ss_pred eccc-eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHH
Q 027144 81 CSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDA 158 (227)
Q Consensus 81 ~~~~-~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~ 158 (227)
++++ +|.||+++|.+++.|++.|++||||||||||||+|+++||++++||+++|++||++||++|+||.+ +.++|.++
T Consensus 26 ~~~~~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~ 105 (328)
T 3u0g_A 26 DRDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAA 105 (328)
T ss_dssp SCCSEEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSCHHHHHHH
T ss_pred cCCCEEEECCEEeehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 3445 799999999999999999999999999999999998888988899999999999999999999987 99999999
Q ss_pred HHHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCC-CcEEEEEEeecCCCcc
Q 027144 159 VKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP-EYTFLVFASPVGNYFK 213 (227)
Q Consensus 159 i~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~-~~~f~I~~sP~g~Y~~ 213 (227)
++++++.|+. .++||||+++++.+.+|+.|.. .++++|++.|+++|++
T Consensus 106 i~~lv~~n~~-------~~~~iR~~vtrg~~~~g~~p~~~~~~~~i~~~p~~~~~~ 154 (328)
T 3u0g_A 106 QRDVVRENKL-------ESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLG 154 (328)
T ss_dssp HHHHHHHTTC-------SSEEEEEEEEECSSCCSTTCCCCCEEEEEEEEECC----
T ss_pred HHHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEEEcCCCCC
Confidence 9999999976 6799999999999889998765 6899999999999875
No 8
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=99.93 E-value=2.9e-25 Score=198.56 Aligned_cols=122 Identities=29% Similarity=0.540 Sum_probs=111.8
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
+|.||+++|.+++.|++.|++||||||||||||+|+++||+ ++|++++|++||++||++|+||.+ +.+++.+++.+++
T Consensus 9 ~~~ng~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~~~~G~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~ 87 (309)
T 1iye_A 9 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVI 87 (309)
T ss_dssp EEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSS-EEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHH
T ss_pred EEECCEEEEhHHcccCccchHHhccceeEEEEEEEECCCCc-EEcCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999887885 579999999999999999999966 9999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCCCC--CcEEEEEEeecCCCccc
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKV 214 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~--~~~f~I~~sP~g~Y~~~ 214 (227)
+.|.. +++|||++++++...+|+.|+. +++++|.+.|+++|+..
T Consensus 88 ~~~~~-------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~ 133 (309)
T 1iye_A 88 RKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGA 133 (309)
T ss_dssp HHTTC-------SSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCT
T ss_pred HhcCC-------CCEEEEEEEEeCCCccCCCCCCCCCcEEEEEEEEcCccCCc
Confidence 99874 6799999999998888988653 78999999999988753
No 9
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=99.92 E-value=2.7e-25 Score=198.80 Aligned_cols=122 Identities=28% Similarity=0.437 Sum_probs=107.2
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
.|.||+++|.+++.|++.|++||||||||||||+|.++||. ++|++++|++||++||++|+||.+ +.+++.+++.+++
T Consensus 8 ~~~nG~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~g~~g~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~ 86 (308)
T 2eiy_A 8 IWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVV 86 (308)
T ss_dssp EEETTEEECGGGCCCCTTCHHHHHCCEEECCEEEECCTTSC-EEETHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred EEECCEEeEhHHCccCccchHhhhcceEEEEEEEECCCCcc-cccCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999776666 789999999999999999999976 9999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCCC--CCcEEEEEEeecCCCccc
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKV 214 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps--~~~~f~I~~sP~g~Y~~~ 214 (227)
+.|.. .++|||++++++...+|+.|. .+++++|.+.|+++|+..
T Consensus 87 ~~~~~-------~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~~~ 132 (308)
T 2eiy_A 87 RRNGY-------RSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGE 132 (308)
T ss_dssp HHTTC-------SSEEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC------
T ss_pred HhCCC-------CcEEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccCCc
Confidence 99874 579999999999888888876 478999999999988753
No 10
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=99.92 E-value=7.1e-25 Score=194.36 Aligned_cols=115 Identities=14% Similarity=0.220 Sum_probs=103.7
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
+|.||+++|.+++.|++.|++||||||||||||+| +| ++|++++|++||++||++|+||.+ +.++|.++|++++
T Consensus 3 ~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~---~g--~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~li 77 (277)
T 3daa_A 3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVY---NG--EMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELV 77 (277)
T ss_dssp EEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEE---TT--EETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred EEECCEEeEhHHCeechhhhHHhcccEEEEEEEEE---CC--EEcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 89 589999999999999999999966 9999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCC---CCCcEEEEEEeecCCC
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAP---APEYTFLVFASPVGNY 211 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~p---s~~~~f~I~~sP~g~Y 211 (227)
+.|+. .++|||+.++++.+..|..+ ..+++++|++.|++++
T Consensus 78 ~~n~~-------~~~~lri~vtrG~~~r~~~~p~~~~~~~~~i~~~p~~~~ 121 (277)
T 3daa_A 78 EKNEL-------NTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRP 121 (277)
T ss_dssp HHHTC-------CSEEEEEEEESCBCSCCSSCCSSCCCCEEEEEEEECCCC
T ss_pred HhcCC-------CcEEEEEEEEecCCCcCCCCCCCCCCcEEEEEEEECCCC
Confidence 99976 56789999998777666553 3478999999999864
No 11
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=99.88 E-value=1.2e-22 Score=183.62 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=100.2
Q ss_pred eEEc---CeE--eeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHH
Q 027144 85 YFEK---GRL--SRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAV 159 (227)
Q Consensus 85 ~W~n---G~i--vp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i 159 (227)
+|.| |++ +|.+++.|++.|+||+||||||||||+| +| ++|++++|++||.+||++|+||.++.+++.+++
T Consensus 17 v~~n~~~G~~~~~~~~~a~i~~~Drg~~yGdgvFEtirv~---~G--~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i 91 (315)
T 3sno_A 17 LIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIR---DG--HACNVRRHGERFKASAALLGLPEPILEDWEKAT 91 (315)
T ss_dssp EEECSTTCCEEEECTTSCCCCTTBTTTTTCCEEEEEEEEE---TT--EETTHHHHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred EEEECCCCeEEEeeHHHCcccccchHhhcCCEeEEEEEEE---CC--EECCHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 6899 999 9999999999999999999999999999 99 579999999999999999999999999999999
Q ss_pred HHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCc
Q 027144 160 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212 (227)
Q Consensus 160 ~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~ 212 (227)
+++++.+.. ..+..++|||++++++.+..| .++++|++.|+++++
T Consensus 92 ~~~v~~~~~---~n~~~~~~iRl~vtrG~~~~g-----~p~~~v~~~p~~~~~ 136 (315)
T 3sno_A 92 QMGIESWYS---HPNAGEASCTWTLSRGRSSTG-----LASGWLTITPVSSDK 136 (315)
T ss_dssp HHHHHHHHT---C--CCCEEEEEEEECCBTTTC-----CCEEEEEEEECCHHH
T ss_pred HHHHHhhcc---cCCCCCEEEEEEEEeCCCCCC-----CCEEEEEEEECCCcc
Confidence 999998321 111267999999999876554 357889999988764
No 12
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=99.88 E-value=2.4e-22 Score=176.37 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=99.1
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~ 164 (227)
.|.||+. ++.|++.|+++|||||||||||+| +| ++|++++|++||.+||++|+||.++.+++.+++.++++
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~yG~gvfEtir~~---~G--~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~~~ 72 (269)
T 1i2k_A 2 FLINGHK----QESLAVSDRATQFGDGCFTTARVI---DG--KVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAA 72 (269)
T ss_dssp EEETTEE----ESCCCTTCHHHHHCCEEEEEEEEE---TT--EETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred EEECCCc----CCccCccccccccceeEEEEEEEE---CC--EEecHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 5899992 478999999999999999999999 99 58999999999999999999998889999999999998
Q ss_pred hcCCcCCCCCCccEEEEEEEEecCCccccCCC--CCcEEEEEEeecCCCc
Q 027144 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYF 212 (227)
Q Consensus 165 ~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps--~~~~f~I~~sP~g~Y~ 212 (227)
.+. ++|||++++++.+++|+.|+ .+++++|.+.|+++|+
T Consensus 73 ~~~---------~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~ 113 (269)
T 1i2k_A 73 EQQ---------NGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHY 113 (269)
T ss_dssp HHC---------SEEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHH
T ss_pred hCC---------CeEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcc
Confidence 652 48999999999888888876 3789999999999865
No 13
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=99.87 E-value=6.8e-22 Score=176.24 Aligned_cols=109 Identities=23% Similarity=0.306 Sum_probs=98.8
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~ 164 (227)
.|.||+++ +.|++.|++++||||||||||+| || ++|++++|++||++||++|+||.+ .++|.+++.++++
T Consensus 24 ~~~nG~~~----~~i~~~d~g~~yGdgvFEtir~~---~G--~~~~l~~Hl~RL~~Sa~~l~~~~~-~~~l~~~i~~~v~ 93 (292)
T 2xpf_A 24 DWVDGRPA----AELSVRDRGLAYGDGLFETLAVR---AG--TPRLLERHLARLEEGCRRLAIPLD-TAALRQELLAFCA 93 (292)
T ss_dssp EEETTEEC----SEEETTBHHHHHCCEEEEEEEEE---TT--EETTHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHH
T ss_pred EEECCEEE----EEEcccchhhhcCcEeEEEEEEE---CC--EECCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHH
Confidence 79999998 78999999999999999999999 99 578999999999999999999986 8999999999998
Q ss_pred hcCCcCCCCCCccEEEEEEEEecCCccccCCCC--CcEEEEEEeecCCCc
Q 027144 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYF 212 (227)
Q Consensus 165 ~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~--~~~f~I~~sP~g~Y~ 212 (227)
.+. ++|||++++++.+.+|+.|+. +++++|.+.|+++|+
T Consensus 94 ~~~---------~~~iR~~v~rg~~~~g~~p~~~~~~~~~i~~~p~~~~~ 134 (292)
T 2xpf_A 94 ALG---------DGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYP 134 (292)
T ss_dssp HHC---------SEEEEEEEECCBCCSSSSCCTTCCCEEEEEEECCCCCC
T ss_pred hCC---------CcEEEEEEEecCCCCCCCCCCCCCcEEEEEEEECCccc
Confidence 742 479999999988888888764 688999999999877
No 14
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=99.87 E-value=9.2e-22 Score=173.77 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=91.7
Q ss_pred eEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~e~l~~~i~~lV 163 (227)
.|.|| .+++.|++.|+++|||||||||||+| +| ++|++++|++||++||++|+||.+ +.+++.+++.+++
T Consensus 6 ~~~nG----~~~a~i~~~d~g~~yG~gvFEtir~~---~g--~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~ 76 (272)
T 3lul_A 6 VIEDK----GDMTPSFGIDDRIFLGEGLFETIRVN---SS--KPSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKI 76 (272)
T ss_dssp ECCCC----C--CCCCCTTBGGGGTCEEEEEEEEE---TT--EESSHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHH
T ss_pred EEECC----ccccccCCccchhhcceEeEEEEEEE---CC--EeCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 68888 77889999999999999999999999 89 589999999999999999999998 9999999999999
Q ss_pred HhcCCcCCCCCCccEEEEEEEEecCCccccCCCCC--cEEEEE
Q 027144 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPE--YTFLVF 204 (227)
Q Consensus 164 ~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~--~~f~I~ 204 (227)
+.|+. .++|||++++++.+.+|+.++.. ++++|.
T Consensus 77 ~~~~~-------~~~~irl~v~rg~~~~g~~~~~~~~~~~~~~ 112 (272)
T 3lul_A 77 QKDNL-------YHGGIKAILSGGPASRGLAERGQVSQLIFQT 112 (272)
T ss_dssp HHTTC-------SSEEEEEEEECCBCCSSTTCCCSSEEEEEEE
T ss_pred HhcCC-------CCEEEEEEEEecCCccCcCCCCCCCcEEEEE
Confidence 99876 67999999999988888887653 455554
No 15
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=99.75 E-value=8.2e-19 Score=155.81 Aligned_cols=111 Identities=20% Similarity=0.172 Sum_probs=93.0
Q ss_pred CceEEEEeccceEEcCeEeeCCCcccCcCCcceeecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCC-CH
Q 027144 74 DYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SI 152 (227)
Q Consensus 74 d~m~~~~~~~~~W~nG~ivp~~~~~I~~~d~gL~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~-~~ 152 (227)
-|+.+.-|. |.+|++++..++.|++.|+++ |||||||||+| +| .+|++++|++||++||++|+||.+ +.
T Consensus 9 ~~~~~~~~~---~~~~~~~~~~~~~i~~~d~g~--G~gvFEtir~~---~G--~~~~l~~Hl~RL~~Sa~~l~~~~p~~~ 78 (285)
T 3csw_A 9 HHHHVLIWW---RGKFRRADEISLDFSLFEKSL--QGAVYETLRTY---SR--APFAAYKHYTRLKRSADFFNLPLSLSF 78 (285)
T ss_dssp ---CCEEEE---TTEEEESSEEEEEHHHHHHHT--TCCEEEEEEEE---TT--EETTHHHHHHHHHHHHHTTTCCCSSCH
T ss_pred ccceEEEEE---ccCceEcccccCEeCCccccc--ceeeEEEEEEE---CC--EECCHHHHHHHHHHHHHHhCCCCCCCH
Confidence 344444554 889999999999999999999 99999999999 99 589999999999999999999966 99
Q ss_pred HHHHHHHHHHHHhcCCcCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEeecCCCc
Q 027144 153 DQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212 (227)
Q Consensus 153 e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v~~~~~~lGv~ps~~~~f~I~~sP~g~Y~ 212 (227)
+++.+++.++++.|. +++|||+++.. . .++++|.+.|+++|+
T Consensus 79 ~~l~~~i~~~~~~~~--------~~~~iR~~v~~---------~-~~~~~i~~~p~~~~~ 120 (285)
T 3csw_A 79 DEFTKVLKAGADEFK--------QEVRIKVYLFP---------D-SGEVLFVFSPLNIPD 120 (285)
T ss_dssp HHHHHHHHHHHTTCS--------SCEEEEEEECT---------T-TCCEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHhhC--------CCeEEEEEEEc---------C-CCEEEEEEEeCCCcc
Confidence 999999999998874 24899999931 1 126788888888775
No 16
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=99.75 E-value=1.2e-18 Score=151.26 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=82.4
Q ss_pred eEEcCeEeeCCCcccCcCCcceee-cCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHH
Q 027144 85 YFEKGRLSRYGKIELSPSSGVLNY-GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTA 163 (227)
Q Consensus 85 ~W~nG~ivp~~~~~I~~~d~gL~Y-GdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV 163 (227)
.|.||+.+ +++.|++++| |||||||||+| +| ++|++++|++||++||++|+||.+..+++.+++.+++
T Consensus 2 ~~~nG~~~------~~~~d~g~~y~G~gvFEtir~~---~G--~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~l~~~i~~~~ 70 (246)
T 2zgi_A 2 RLLNGTPL------ALALPEAFLYHGASVFTTLRAE---GG--RPLWLEEHLARLRRHALALGLSYPGDEAFLEDLEALL 70 (246)
T ss_dssp EEETTEEC------CCSSCHHHHHSCCCEEEEEEEE---TT--EETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred EEECCccc------CCCccCcccccCeeEEEEEEEE---CC--EeCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 48899954 4999999999 99999999999 89 6899999999999999999999873499999999999
Q ss_pred Hhc-CCcCCCCCCccEEEEEEEEecCCccccCCC
Q 027144 164 LAN-KRWVPPPGKGSLYIRPLLVGSGPILGLAPA 196 (227)
Q Consensus 164 ~~n-~~wvP~~~~~slYIRP~v~~~~~~lGv~ps 196 (227)
+.| +. +++|||+++++++..+|+.|.
T Consensus 71 ~~~~~~-------~~~~vR~~v~~g~~~~~~~p~ 97 (246)
T 2zgi_A 71 RAFPKA-------PCLRLRFTVGEGVRLSEARPY 97 (246)
T ss_dssp TSCTTC-------SEEEEEEEEETTEEEEEEEEC
T ss_pred HhcCCC-------CCEEEEEEEECCCCccCcCcC
Confidence 887 33 689999999988877777654
No 17
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=99.50 E-value=1.1e-14 Score=121.91 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=62.0
Q ss_pred eecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhH-hhcCCC--CC-CHHHHHHHHHHHHHhcCCcCCCCCCccEEEEE
Q 027144 107 NYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGA-ERMCMP--SP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 182 (227)
Q Consensus 107 ~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa-~rL~mp--~~-~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP 182 (227)
+||+|||||||+| +| .+|++++|++||++|| ++|+|| .+ +.+++.+++. +++.|.. +++|||+
T Consensus 2 ~~g~~vfEt~r~~---~g--~~~~l~~Hl~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~~-------~~~~iR~ 68 (194)
T 3ceb_A 2 MWQFPLFETILIE---QG--QAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHRE-------GLIRCRI 68 (194)
T ss_dssp CTTCCEEEEEEEE---TT--EECSHHHHHHHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCSS-------SEEEEEE
T ss_pred CCCCeEEEEEEEE---CC--EecCHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCCC-------CCEEEEE
Confidence 7999999999999 99 5899999999999999 999999 44 8999999998 8887764 6899999
Q ss_pred EEEecC
Q 027144 183 LLVGSG 188 (227)
Q Consensus 183 ~v~~~~ 188 (227)
+++++.
T Consensus 69 ~~~~g~ 74 (194)
T 3ceb_A 69 DYNHHD 74 (194)
T ss_dssp EECSSC
T ss_pred EEeCCc
Confidence 999874
No 18
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=99.45 E-value=4.7e-13 Score=114.76 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=67.5
Q ss_pred eecCeEEeEEEEEEcCCCeEEeeChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCcCCCCCCccEEEEEEEEe
Q 027144 107 NYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVG 186 (227)
Q Consensus 107 ~YGdgvFEglKayr~~dG~i~lFRpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~wvP~~~~~slYIRP~v~~ 186 (227)
.-|+|||||||+| ++| .+|++++|++||++||++|+||. +.+++.+++.++++ |.. +++|||+++++
T Consensus 13 ~~g~glFEtir~~--~~G--~~~~l~~Hl~RL~~Sa~~l~~~~-~~~~l~~~i~~~~~-~~~-------~~~~iR~~~~~ 79 (221)
T 3qqm_A 13 TADFELIETMRWQ--PGT--SFLRFDRHLARLYGSAAELGFAC-DPQRIAEVLSDALD-GAR-------TAMRTRLALAR 79 (221)
T ss_dssp TSCCEEEEEEEEE--TTT--EETTHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHT-TCC-------SCEEEEEEEET
T ss_pred CCCCEEEEEEEEe--cCC--cCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cCC-------CCEEEEEEEEc
Confidence 4689999999999 367 57999999999999999999995 88999999999997 433 67999999998
Q ss_pred cCCccccCCCCCcEEEEEEeecCCCc
Q 027144 187 SGPILGLAPAPEYTFLVFASPVGNYF 212 (227)
Q Consensus 187 ~~~~lGv~ps~~~~f~I~~sP~g~Y~ 212 (227)
++ .+.|.+.|+++++
T Consensus 80 ~g-----------~~~i~~~p~~~~~ 94 (221)
T 3qqm_A 80 NG-----------DATASAQPYEPLA 94 (221)
T ss_dssp TS-----------CEEEEEEECCCCC
T ss_pred CC-----------CEEEEEEcCCCCC
Confidence 64 2456666666554
No 19
>2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A
Probab=28.63 E-value=45 Score=26.29 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=29.2
Q ss_pred ChhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 027144 130 RPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKR 168 (227)
Q Consensus 130 Rpd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~ 168 (227)
-+..|+.||.+|.=.+--..+..++|.++|.+++..|..
T Consensus 80 ~~~~kirrla~svyg~p~q~papeef~dava~v~~eN~G 118 (139)
T 2r18_A 80 ASEEQILRAATSIYGAPGQAEPPQAFIDEVAKVYEINHG 118 (139)
T ss_dssp CCHHHHHHHHHHHHCCGGGCCCCHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHhhcCCccCCCCHHHHHHHHHHHHHhCC
Confidence 457899999988755544456667788999999888764
No 20
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=20.34 E-value=1e+02 Score=26.33 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=29.9
Q ss_pred hhhHHHHHHHhHhhcCCCCCCHHHHHHHHHHHHHhcCCc
Q 027144 131 PDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 169 (227)
Q Consensus 131 pd~H~~RL~~Sa~rL~mp~~~~e~l~~~i~~lV~~n~~w 169 (227)
..+|+.||.+|.=.+--..+..++|.++|.++...|.--
T Consensus 151 ~~~kirRla~svyg~p~Q~papeef~~ava~v~~en~Gr 189 (242)
T 3zed_D 151 DMDKIRRLANSVYGLPHQEPAPDDFYQAVVEVFAENGGR 189 (242)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 488999999987555444567788999999977777653
Done!