RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027144
(227 letters)
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 246 bits (630), Expect = 3e-81
Identities = 67/181 (37%), Positives = 107/181 (59%), Gaps = 2/181 (1%)
Query: 35 YTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSR 93
+ + L+ + ++ N GFG D+M ++ + D + ++
Sbjct: 2 HHHHNSGPLEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIP 61
Query: 94 YGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSID 153
YG I+L PS+ VL+YGQ +FEG+KAYR DG +V FRP+ NA RLQ+ A R+ +P +
Sbjct: 62 YGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEE 121
Query: 154 QFIDAVKQTALANKRWVPP-PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212
FI++++Q +++WVPP G+ SLY+RP ++ + P LG+ P+ EY +L+ ASP G YF
Sbjct: 122 VFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYF 181
Query: 213 K 213
K
Sbjct: 182 K 182
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 243 bits (623), Expect = 3e-80
Identities = 52/152 (34%), Positives = 85/152 (55%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRK 121
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++
Sbjct: 24 PGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKG 83
Query: 122 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181
+D Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+R
Sbjct: 84 KDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVR 143
Query: 182 PLLVGSGPILGLAPAPEYTFLVFASPVGNYFK 213
P+L+G+ P LG++ V PVG YF
Sbjct: 144 PVLIGNEPSLGVSQPRRALLFVILCPVGAYFP 175
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 239 bits (612), Expect = 2e-78
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
D +NL FG D+M T++ S+++ +EK + + L P S L+Y LFEG+KA+R
Sbjct: 43 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 102
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP SLYI
Sbjct: 103 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 162
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK 213
RP +G+ P LG+ + V SPVG YF
Sbjct: 163 RPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFS 195
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 67.6 bits (166), Expect = 1e-13
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG +FEG++AY G + FR ++ R A+ + M P + ++ +A+K+
Sbjct: 29 LHYGTSVFEGIRAYETAKGPAI-FRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVR 87
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEY--TFLVFASPVGNYF 212
N G S YIRPL +G+ LG+ P P +V A G Y
Sbjct: 88 RN-------GYRSCYIRPLAWMGAKA-LGVNPLPNNPAEVMVAAWEWGAYL 130
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 66.8 bits (164), Expect = 2e-13
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG +FEG++ Y G +V FR ++ RL A+ P SID+ ++A +
Sbjct: 30 LHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR 88
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYF 212
N S YIRPL+ VG +G+ P Y+ ++ A P G Y
Sbjct: 89 KN-------NLTSAYIRPLIFVGDVG-MGVNPPAGYSTDVIIAAFPWGAYL 131
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 66.9 bits (164), Expect = 2e-13
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG G+FEG++AY+ DG +FR ++ RL A+ M P + A +
Sbjct: 52 LHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVR 111
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP-EYTFLVFASPVGNYF 212
NK S Y+RP++ +GS LG++ + A P G Y
Sbjct: 112 ENKL-------ESCYLRPIIWIGSEK-LGVSAKGNTIHVAIAAWPWGAYL 153
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 59.8 bits (146), Expect = 5e-11
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
Query: 98 ELSPSSGV---LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SID 153
+++PS G+ + G+GLFE ++ + + RL A ++ +P S D
Sbjct: 12 DMTPSFGIDDRIFLGEGLFETIRVN---SSK--PSFAYMHWERLGNSARQLGIPFEISFD 66
Query: 154 QFIDAVKQTALANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYTFLVFA 205
+ + + Q + I+ +L G GLA + + L+F
Sbjct: 67 DWFEHLIQKIQKDNL-------YHGGIKAILSGGPAS-RGLAERGQVSQLIFQ 111
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 57.2 bits (139), Expect = 5e-10
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
+ ++E ++ Y F ++ RL+ A+ +P S D+F +K A
Sbjct: 36 KSLQGAVYETLRTY---SRA--PFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGAD 90
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP 197
K+ + I+ L SG + +P
Sbjct: 91 EFKQ--------EVRIKVYLFPDSGEV-LFVFSP 115
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 56.8 bits (138), Expect = 5e-10
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 19/109 (17%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
L YG GLFE + G +++ RL+ G R+ +P + A
Sbjct: 41 LAYGDGLFETLAVR---AGT--PRLLERHLARLEEGCRRLAIP-LDTAALRQELLAFCAA 94
Query: 166 NKRWVPPPGKGSLYIRPLL-VGSGPILGLAPA--PEYTFLVFASPVGNY 211
+ ++ G G G AP ++ SP Y
Sbjct: 95 LG---------DGVAKLIVTRGEGL-RGYAPPAEASPRRILSGSPRPAY 133
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 54.6 bits (132), Expect = 3e-09
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 10/104 (9%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
L G G+FE + DG ++ R + A + +P P ++ + A +
Sbjct: 43 LTRGDGIFETLLIR---DGHA--CNVRRHGERFKASAALLGLPEPILEDWEKATQMGI-- 95
Query: 166 NKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYTFLVFASPV 208
+ W P G L G GLA V + +
Sbjct: 96 -ESWYSHPNAGEASCTWTLSRGRSS-TGLASGWLTITPVSSDKL 137
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 54.1 bits (131), Expect = 4e-09
Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 20/111 (18%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
+G G F + DG++ L + RLQ +R+ + Q +K A
Sbjct: 19 TQFGDGCFTTARVI---DGKVSLL--SAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAE 73
Query: 166 NKRWVPPPGKGSLYIRPLLV--GSGPILGLAPAPEY--TFLVFASPVGNYF 212
+ + ++ +++ GSG G + T ++ + ++
Sbjct: 74 QQ---------NGVLK-VVISRGSGG-RGYSTLNSGPATRILSVTAYPAHY 113
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 52.1 bits (126), Expect = 2e-08
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 15/100 (15%)
Query: 99 LSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA 158
L+ L +G +F ++A G+ +++ RL+ A + + P + F++
Sbjct: 11 LALPEAFLYHGASVFTTLRAE---GGR--PLWLEEHLARLRRHALALGLSYPGDEAFLED 65
Query: 159 VKQTALANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAP 197
++ A + + +R VG G P
Sbjct: 66 LEALLRAFPK--------APCLRLRFTVGEGV-RLSEARP 96
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 47.5 bits (114), Expect = 1e-06
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 25/123 (20%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
+G G++E +K Y +G+ +F +++ RL AE++ + P + D+F + +
Sbjct: 24 YQFGDGVYEVVKVY---NGE--MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVE 78
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYTFLVFASPVGNYFKVAAFSHETYS 223
N + +I + G+ P PV + ++ E
Sbjct: 79 KN-------ELNTGHIYFQVTRGTSP-RAHQFPENTV-----KPV-----IIGYTKENPR 120
Query: 224 GFE 226
E
Sbjct: 121 PLE 123
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 41.9 bits (99), Expect = 5e-05
Identities = 18/92 (19%), Positives = 24/92 (26%), Gaps = 14/92 (15%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165
L E M+ G L A RL A + Q I V AL
Sbjct: 12 DTADFELIETMRWQ---PGTSFLRFDRHLA-RLYGSAAELGFACD--PQRIAEVLSDALD 65
Query: 166 NKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP 197
R ++ R L + + P
Sbjct: 66 GAR-------TAMRTR-LALARNGDATASAQP 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.077
Identities = 41/287 (14%), Positives = 72/287 (25%), Gaps = 114/287 (39%)
Query: 2 MRPATMIRNACLRNFSQSLRV--GSAF----LKSGDFCRYTSQAAASLQQDCEPSA---- 51
RP T + + + L V S F L+ F + + D EP+
Sbjct: 6 TRPLT-LSHG---SLEHVLLVPTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAEL 60
Query: 52 ----------YSDDESADHMDWDNLGFGLTP--ADYMYTMKCSND--------------- 84
+ D L LT Y+ ND
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFD-QVLNLCLTEFENCYL----EGNDIHALAAKLLQENDTT 115
Query: 85 ----------YFEKGRLSRYGKIELSPSSGVLN---------Y----GQGLFEGMKAYRK 121
Y +++ + +S + GQG + Y +
Sbjct: 116 LVKTKELIKNYITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD---DYFE 171
Query: 122 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA--------VKQTALANK------ 167
E L+ + + I ++ T A K
Sbjct: 172 E---------------LR---DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 168 ---RWVPPPGK--GSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVG 209
W+ P Y+ + + S P++G+ Y +V A +G
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHY--VVTAKLLG 257
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.15
Identities = 31/213 (14%), Positives = 57/213 (26%), Gaps = 72/213 (33%)
Query: 12 CLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDC-EPSAYSDDESADHMDWDNLGFGL 70
L S+ + F++ Y + ++ + +PS +
Sbjct: 70 TLL--SKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQR---------- 116
Query: 71 TPADYMYTMKCSNDYFEKGRLSRYGKI--------ELSPSSGVLNYGQG----------- 111
D +Y N F K +SR EL P+ VL G
Sbjct: 117 ---DRLYN---DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 112 --------LFEG------MKAYRKEDG-----QLVLFRPDQNAIRLQTGAERMCMPSPSI 152
+ +K + Q +L++ D N + ++ I
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLRI 227
Query: 153 DQFIDAVKQTALANKRWVPPPGKGSLYIRPLLV 185
+++ L +K Y LLV
Sbjct: 228 HSIQAELRRL-LKSKP----------YENCLLV 249
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.17
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 20/46 (43%)
Query: 117 KAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 162
+A +K L L+ D +P++ A+K T
Sbjct: 20 QALKKLQASLKLYADDS---------------APAL-----AIKAT 45
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131,
NYSGXRC, structural genomics, protein structure
initiative; 2.04A {Pseudomonas syringae PV}
Length = 398
Score = 28.3 bits (63), Expect = 2.3
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 17/96 (17%)
Query: 87 EKGRLSRYGKIELSPSSGVLNY-----GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTG 141
+ ++ G L P++ + + +GLFE + +A
Sbjct: 300 QPAQILERGMGYLHPNALIDDRIGGGHPEGLFEAWANLYYRFALAM------DATDRSDT 353
Query: 142 AERMCMPSPSID------QFIDAVKQTALANKRWVP 171
+ P ID ++++ +A + WV
Sbjct: 354 QALSAVRYPGIDAGVEGVRWVERCVLSADNDSIWVA 389
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 26.2 bits (58), Expect = 4.1
Identities = 14/53 (26%), Positives = 16/53 (30%), Gaps = 16/53 (30%)
Query: 169 WVPPPGKGSLYI-----------RPLLVGSGP-----ILGLAPAPEYTFLVFA 205
W P G+ S Y G + GL P EYT V A
Sbjct: 22 WESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVA 74
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B),
unknown function; 2.20A {Thermus thermophilus}
Length = 116
Score = 26.3 bits (57), Expect = 4.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 173 PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK 213
PG G+LY+ P + GP L A +VF P+ +
Sbjct: 16 PGLGTLYVDPSTLPEGPFLAYDRAGNLVKVVFMVPLKKLNE 56
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding
lectin, monomer, homogeneous beta- sheet; 2.00A
{Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Length = 112
Score = 26.0 bits (57), Expect = 5.1
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 29/122 (23%)
Query: 18 QSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMY 77
L G L G + +Q DC Y ++ W + G +
Sbjct: 8 HQLDTGG-SLAEGGY-------LFIIQNDCNLVLYDNN----RAVWASGTNGKASGCVL- 54
Query: 78 TMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR---KEDGQLVLFRPDQN 134
++ G + + S + + Y + D +V++ N
Sbjct: 55 ------------KMQNDGNLVIYSGSRAI-WASNTNRQNGNYYLILQRDRNVVIYDNSNN 101
Query: 135 AI 136
AI
Sbjct: 102 AI 103
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 26.3 bits (58), Expect = 7.6
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 168 RWVPPPGKGSLYI----------RPLLVGSGP----ILGLAPAPEYTFLVFA 205
RW P K Y + + + GL EYT + A
Sbjct: 26 RWRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVA 77
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 9.5
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 162
+G L + L E RKE + R A+ ++T E + S D V+
Sbjct: 728 NGGLQFVPELKEFTAKLRKELVETSEVRK---AVSIETALEHKVVNGNSADAAYAQVEIQ 784
Query: 163 ALANKRWVPPP 173
AN + P
Sbjct: 785 PRANIQLDFPE 795
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,527,921
Number of extensions: 203878
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 25
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)