RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 027144
         (227 letters)



>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
           aminotransferase {Human (Homo sapiens), mitochondrial
           [TaxId: 9606]}
          Length = 363

 Score =  151 bits (382), Expect = 6e-45
 Identities = 52/157 (33%), Positives = 86/157 (54%)

Query: 61  MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
              + L FG T  D+M  ++ ++  + + R+  +  + L P+S  L+Y   LFEGMKA++
Sbjct: 21  GPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK 80

Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
            +D Q+ LFRP  N  R+   A R+C+PS    + ++ +++    +K WVP     SLY+
Sbjct: 81  GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYV 140

Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKVAAF 217
           RP+L+G+ P LG++        V   PVG YF   + 
Sbjct: 141 RPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSV 177


>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
           {Escherichia coli [TaxId: 562]}
          Length = 304

 Score = 76.1 bits (186), Expect = 5e-17
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 89  GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
           G + R+   ++   S  L+YG  +FEG++ Y    G  V+FR  ++  RL   A+    P
Sbjct: 9   GEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFP 67

Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTF--LVFAS 206
                  +        A +  +      S YIRPL+      +G+ P   Y+   ++ A 
Sbjct: 68  VSQSIDELME------ACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 121

Query: 207 PVGNYFKVAAFSH 219
           P G Y    A   
Sbjct: 122 PWGAYLGAEALEQ 134


>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
           strain YM-1 [TaxId: 1409]}
          Length = 277

 Score = 52.3 bits (124), Expect = 8e-09
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 89  GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
            ++ +  ++++        +G G++E +K Y  E     +F  +++  RL   AE++ + 
Sbjct: 7   DQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRIT 61

Query: 149 SPSIDQFI-DAVKQTALANKRW 169
            P         + +    N+  
Sbjct: 62  IPYTKDKFHQLLHELVEKNELN 83


>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
           [TaxId: 562]}
          Length = 269

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 12/115 (10%)

Query: 99  LSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDA 158
           L+ S     +G G F   +     DG+  +     +  RLQ   +R+ +      Q    
Sbjct: 12  LAVSDRATQFGDGCFTTARVI---DGK--VSLLSAHIQRLQDACQRLMISCDFWPQLEQ- 65

Query: 159 VKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK 213
                   K        G L +       G       +   T ++  +    ++ 
Sbjct: 66  ------EMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYD 114


>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
           putida [TaxId: 303]}
          Length = 345

 Score = 27.9 bits (60), Expect = 1.1
 Identities = 13/135 (9%), Positives = 32/135 (23%), Gaps = 4/135 (2%)

Query: 30  GDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKG 89
                + +  A  +    + + +   +        +                +       
Sbjct: 214 EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQ 273

Query: 90  RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP-DQNAIRLQTGAERMCMP 148
            L   G +E+   +        L   M     + G          N +R  T        
Sbjct: 274 GLEGLGGVEVLGGTEANILFCRLDSAMIDALLKAGFGFYHDRWGPNVVRFVTSF---ATT 330

Query: 149 SPSIDQFIDAVKQTA 163
           +  +D  ++ V+  A
Sbjct: 331 AEDVDHLLNQVRLAA 345


>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 224

 Score = 25.6 bits (56), Expect = 4.4
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 103 SGVLNYGQGLF----EGMKAYRKEDGQLVLFRPDQNAIRLQTG---AERMCMPSPSIDQF 155
            G+ N+         + M+A  +   +   F  D            AE + +P  +   F
Sbjct: 98  VGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIF 157

Query: 156 IDAVKQTA 163
           +D    + 
Sbjct: 158 LDNTHSSR 165


>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625
          {Thermus thermophilus [TaxId: 274]}
          Length = 252

 Score = 25.2 bits (55), Expect = 6.5
 Identities = 5/20 (25%), Positives = 6/20 (30%)

Query: 67 GFGLTPADYMYTMKCSNDYF 86
          G GL    Y    +   D  
Sbjct: 42 GKGLDRRSYRLLREAGVDLV 61


>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 255

 Score = 25.2 bits (55), Expect = 6.6
 Identities = 4/27 (14%), Positives = 8/27 (29%)

Query: 67 GFGLTPADYMYTMKCSNDYFEKGRLSR 93
          GFG+        ++        G  + 
Sbjct: 42 GFGMHRDAARGALEAGAGCLTLGNHAW 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 863,238
Number of extensions: 39313
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 9
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)