Query 027146
Match_columns 227
No_of_seqs 111 out of 356
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:38:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106 ER lumen protein retai 100.0 3.1E-71 6.7E-76 473.3 12.1 174 45-221 1-175 (212)
2 COG5196 ERD2 ER lumen protein 100.0 2.7E-59 5.9E-64 394.8 13.5 173 45-220 1-175 (214)
3 PF00810 ER_lumen_recept: ER l 100.0 1.2E-56 2.6E-61 371.2 12.6 144 72-216 1-147 (147)
4 TIGR00951 2A43 Lysosomal Cysti 95.9 0.13 2.8E-06 45.3 11.1 136 57-194 16-171 (220)
5 KOG3211 Predicted endoplasmic 95.8 0.18 3.9E-06 44.9 11.7 139 64-208 50-191 (230)
6 PF04193 PQ-loop: PQ loop repe 93.8 0.37 8E-06 33.3 6.7 55 162-216 2-56 (61)
7 PF04193 PQ-loop: PQ loop repe 88.7 0.66 1.4E-05 32.0 3.6 42 52-93 9-50 (61)
8 smart00679 CTNS Repeated motif 84.3 0.8 1.7E-05 27.8 1.9 22 64-85 7-28 (32)
9 smart00679 CTNS Repeated motif 61.1 7.7 0.00017 23.3 2.0 26 175-200 1-26 (32)
10 PHA02246 hypothetical protein 54.2 87 0.0019 27.2 7.9 129 64-207 24-154 (192)
11 PF02790 COX2_TM: Cytochrome C 37.4 36 0.00078 24.5 2.7 42 114-155 39-81 (84)
12 COG4095 Uncharacterized conser 37.1 1.5E+02 0.0033 23.1 6.2 45 167-211 10-54 (89)
13 TIGR00951 2A43 Lysosomal Cysti 31.1 73 0.0016 28.0 4.1 36 174-209 16-51 (220)
14 PF09586 YfhO: Bacterial membr 28.5 6.4E+02 0.014 25.8 10.9 60 13-74 109-169 (843)
15 PF06363 Picorna_P3A: Picornav 27.4 93 0.002 24.6 3.6 29 42-70 66-94 (100)
16 PTZ00154 40S ribosomal protein 27.1 46 0.00099 27.8 2.0 27 49-82 49-75 (134)
17 PF14007 YtpI: YtpI-like prote 22.7 2E+02 0.0044 22.2 4.7 60 3-69 21-80 (89)
18 PF02109 DAD: DAD family; Int 20.2 3.9E+02 0.0083 21.6 6.0 58 11-69 12-74 (112)
No 1
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-71 Score=473.31 Aligned_cols=174 Identities=46% Similarity=0.761 Sum_probs=169.4
Q ss_pred chHHHHHhhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhhccceee-echhHHHHHHHHHHHHHHHHHHHHhc
Q 027146 45 HDNLFVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFV-MEYDIHTLLDLATLATTLWVIYMIRF 123 (227)
Q Consensus 45 ~~~~~llgdl~hl~s~~iLl~KI~~~KS~~GiSlKTQ~LyalVf~~R~~~~~~-~~y~~~t~~k~~~l~~s~~iiyli~~ 123 (227)
+|.||++||++|++|+++|++||+|+|||+|+|+|||+|||+||++||+|+|. .++++|++||+++++++.+++|+|++
T Consensus 1 mn~fr~~gd~~H~~~i~vLi~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf~~~~s~ynt~mki~fl~~t~~ivymi~~ 80 (212)
T KOG3106|consen 1 MNNFRFAGDLSHLAAIIVLILKIWKTKSCAGISLKSQELFALVFATRYLDLFTFYESLYNTIMKIAFLASTLWIVYMIRF 80 (212)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999987 67888999999999999999999999
Q ss_pred ccccccccccccccchhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHhH
Q 027146 124 NLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGV 203 (227)
Q Consensus 124 ~~k~TYd~~~Dtf~~~~liip~~vLa~i~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~ 203 (227)
|+|+|||+|+|||+++|+++||++||+++||+. .+.|++||||+|||||||||||+|+||+||+|++|+||+||||+
T Consensus 81 k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~---t~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~ 157 (212)
T KOG3106|consen 81 KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSF---TILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGL 157 (212)
T ss_pred HHHHHHhcccCceeEEEEehhheeeeeeecCCc---cHHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHH
Confidence 999999999999999999999999999999984 49999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcce
Q 027146 204 ARFLSCAHWVLQVLFHSV 221 (227)
Q Consensus 204 yR~ly~~nWi~r~~~e~~ 221 (227)
||++|++|||+|+.+|++
T Consensus 158 yR~ly~~~WI~r~~~e~~ 175 (212)
T KOG3106|consen 158 YRALYIANWIYRYVTEDF 175 (212)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999999984
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.7e-59 Score=394.82 Aligned_cols=173 Identities=30% Similarity=0.604 Sum_probs=163.7
Q ss_pred chHHHHHhhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhhccceeeec--hhHHHHHHHHHHHHHHHHHHHHh
Q 027146 45 HDNLFVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVME--YDIHTLLDLATLATTLWVIYMIR 122 (227)
Q Consensus 45 ~~~~~llgdl~hl~s~~iLl~KI~~~KS~~GiSlKTQ~LyalVf~~R~~~~~~~~--y~~~t~~k~~~l~~s~~iiyli~ 122 (227)
.|.||++||++|++|+.+|+.||.++|+|+|+|+|||.||++||++||+|.+... .-+|.+||+++++++.|++++|+
T Consensus 1 m~~Fr~lGD~~Hlasi~vLih~ik~tr~csGlSlKtq~Ly~lVfitRYldLf~f~~~slYn~lMki~FI~s~~yI~~lm~ 80 (214)
T COG5196 1 MDTFRFLGDFLHLASIAVLIHKIKRTRSCSGLSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMR 80 (214)
T ss_pred CcHHHHHhHHHHHHHHHHHHHHhhhcceecceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999886332 12479999999999999999999
Q ss_pred cccccccccccccccchhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHh
Q 027146 123 FNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALG 202 (227)
Q Consensus 123 ~~~k~TYd~~~Dtf~~~~liip~~vLa~i~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG 202 (227)
.++++||||..|||+++++++||+++|+++|++ +.+.+++||||+|||||||||||+|+||.||-|++|+||++++|
T Consensus 81 ~~~r~tYdk~lDtF~i~~ll~gsav~slff~~~---~tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamg 157 (214)
T COG5196 81 FKYRSTYDKKLDTFNILTLLVGSAVFSLFFTRG---GTISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMG 157 (214)
T ss_pred hcccchHHHhhhhhhhhhhhhhhhhheeeecCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHH
Confidence 999999999999999999999999999999866 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 027146 203 VARFLSCAHWVLQVLFHS 220 (227)
Q Consensus 203 ~yR~ly~~nWi~r~~~e~ 220 (227)
+||++|++|||+|+..|.
T Consensus 158 LYRalYip~wI~r~~~~~ 175 (214)
T COG5196 158 LYRALYIPYWILRKVYDI 175 (214)
T ss_pred HHHHhhhhHHHHHhhhcc
Confidence 999999999999998874
No 3
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00 E-value=1.2e-56 Score=371.23 Aligned_cols=144 Identities=41% Similarity=0.755 Sum_probs=136.9
Q ss_pred ccccccchhhHHHHHHHhhhccceeeec---hhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhHHHHHH
Q 027146 72 TCAGLSLKSQELTAIFLAVRLYCSFVME---YDIHTLLDLATLATTLWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVL 148 (227)
Q Consensus 72 S~~GiSlKTQ~LyalVf~~R~~~~~~~~---y~~~t~~k~~~l~~s~~iiyli~~~~k~TYd~~~Dtf~~~~liip~~vL 148 (227)
||+|+|+|||+||++|+++||+|+...+ ..+|++||++++++|++++|+|+.|||+|||+|+|+|+..++++||++|
T Consensus 1 S~~GlSlktq~ly~~vf~~Ryldl~~f~~~~s~y~~~~k~~~i~~s~~iiyli~~~~~~Ty~~~~D~f~~~~li~p~~vL 80 (147)
T PF00810_consen 1 SCSGLSLKTQILYAIVFLTRYLDLFWFESYLSLYNTIMKVFFIVSSLYIIYLIFFKYKSTYDKEIDTFRLEYLIVPCFVL 80 (147)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhheeehhhhhccccchhhhHHHHHHHHH
Confidence 8999999999999999999999983332 2257999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHhHHHHHHHHHHHHHH
Q 027146 149 ALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQV 216 (227)
Q Consensus 149 a~i~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~yR~ly~~nWi~r~ 216 (227)
|+++|| .+++.+.|++||||+|||||||+|||+|+||+||+|++|+||+++||+||++|++|||+||
T Consensus 81 a~i~~p-~~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 81 ALIFHP-LNSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLNWIYRY 147 (147)
T ss_pred HHHHhc-cccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999 6789999999999999999999999999999999999999999999999999999999997
No 4
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=95.85 E-value=0.13 Score=45.34 Aligned_cols=136 Identities=17% Similarity=0.193 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHhhh-------ccce-eeechh---HHHHHHHHHHH-----HHHHHHHH
Q 027146 57 SIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR-------LYCS-FVMEYD---IHTLLDLATLA-----TTLWVIYM 120 (227)
Q Consensus 57 l~s~~iLl~KI~~~KS~~GiSlKTQ~LyalVf~~R-------~~~~-~~~~y~---~~t~~k~~~l~-----~s~~iiyl 120 (227)
..+..==+.|++|+||++|+|+..-.+-.+.+++- +++. ...+|. +....|-++++ .++.+++.
T Consensus 16 ~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~~~il~~l~~~q 95 (220)
T TIGR00951 16 SISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLHAILICFIVLHQ 95 (220)
T ss_pred HHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34444446999999999999999988655554433 2211 111121 11111222222 22222222
Q ss_pred Hhccccccccccccccc--c--hhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhcCCccchH
Q 027146 121 IRFNLRSSYMEDKDNFA--I--YYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFT 194 (227)
Q Consensus 121 i~~~~k~TYd~~~Dtf~--~--~~liip~~vLa~i~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lT 194 (227)
+. ++.+..++...+.. . ..+.+.+..+..+..+. ..-.+.+.++.-.+-+-.++-+||..+-.|.|..+.+-
T Consensus 96 ~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glS 171 (220)
T TIGR00951 96 CG-DYERGWQRVSNPWILRILVALLACFATLLVALLSPI-TPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLS 171 (220)
T ss_pred Hh-hccccccccchhHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCC
Confidence 21 12111111111111 0 11222222222233322 22346667777778888889999999999986555443
No 5
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=95.83 E-value=0.18 Score=44.92 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=83.9
Q ss_pred HHHHhhccccccccchhhHHHHHHHhhhccceeeechhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhH
Q 027146 64 IYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDLATLATTLWVIYMIRFNLRSSYMEDKDNFAIYYVVV 143 (227)
Q Consensus 64 l~KI~~~KS~~GiSlKTQ~LyalVf~~R~~~~~~~~y~~~t~~k~~~l~~s~~iiyli~~~~k~TYd~~~Dtf~~~~lii 143 (227)
+.||...||+.|+|+.+|+|=.+-++.-+--.+.+.|+.-+.+|..++..+..++-++.+.|+-.- -+.|.+--.+.++
T Consensus 50 I~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pFss~gE~~fLl~Q~vili~~if~f~~~~-~~~v~~l~~~~~v 128 (230)
T KOG3211|consen 50 IMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPFSSYGEYPFLLLQAVILILCIFHFSGQT-VTVVQFLGYIALV 128 (230)
T ss_pred HHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCchhHHHHHHHHHHHHHHHHHHHHhccce-eehhhHHHHHHHH
Confidence 489999999999999999988887775432223333444577899999999998888888877111 1123333333333
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhc---CCccchHHHHHHHHhHHHHHH
Q 027146 144 PCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNT---KIVEPFTAHYVFALGVARFLS 208 (227)
Q Consensus 144 p~~vLa~i~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~---g~vE~lTshYv~aLG~yR~ly 208 (227)
+....+.. .| .++.+..=+-.+-.-.++=+||+.-..++ |...-+|.---+.=.+.|.++
T Consensus 129 ~~~~~sk~-~p----~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARift 191 (230)
T KOG3211|consen 129 VSVLASKA-LP----LWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFT 191 (230)
T ss_pred HHHHHHhh-hh----HHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHH
Confidence 32222211 11 12233333333334457888999888876 455555554445555566654
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=93.75 E-value=0.37 Score=33.34 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHhHHHHHHHHHHHHHH
Q 027146 162 NRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQV 216 (227)
Q Consensus 162 ~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~yR~ly~~nWi~r~ 216 (227)
.+++...+.-+.+++-+||+....|++.+|.+.--++......-++.+++.+...
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~ 56 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSN 56 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888999999999999999999999999999999999999999998887653
No 7
>PF04193 PQ-loop: PQ loop repeat
Probab=88.71 E-value=0.66 Score=32.05 Aligned_cols=42 Identities=26% Similarity=0.102 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhhcc
Q 027146 52 AEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLY 93 (227)
Q Consensus 52 gdl~hl~s~~iLl~KI~~~KS~~GiSlKTQ~LyalVf~~R~~ 93 (227)
+-..-+++.+==++|.+|+||+.|+|..+..+..+..+++..
T Consensus 9 ~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~ 50 (61)
T PF04193_consen 9 SIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVL 50 (61)
T ss_pred HHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHH
Confidence 333444444445699999999999999999988887776643
No 8
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=84.34 E-value=0.8 Score=27.79 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=18.3
Q ss_pred HHHHhhccccccccchhhHHHH
Q 027146 64 IYKLMKEKTCAGLSLKSQELTA 85 (227)
Q Consensus 64 l~KI~~~KS~~GiSlKTQ~Lya 85 (227)
++|++++||+.|+|.-...+-.
T Consensus 7 i~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 7 IIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred HHHHHHcCCcCcCCHHHHHHHH
Confidence 5799999999999987776544
No 9
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=61.06 E-value=7.7 Score=23.31 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHhcCCccchHHHHHHH
Q 027146 175 VSVLPQLRVMQNTKIVEPFTAHYVFA 200 (227)
Q Consensus 175 vAILPQL~mlqk~g~vE~lTshYv~a 200 (227)
++.+||.....|++.++.+-.-+++.
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHH
Confidence 46799999999999999887666653
No 10
>PHA02246 hypothetical protein
Probab=54.25 E-value=87 Score=27.17 Aligned_cols=129 Identities=18% Similarity=0.260 Sum_probs=66.6
Q ss_pred HHHHhhccccccccchhhHHHHHHHhhhc--cceeeechhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhh
Q 027146 64 IYKLMKEKTCAGLSLKSQELTAIFLAVRL--YCSFVMEYDIHTLLDLATLATTLWVIYMIRFNLRSSYMEDKDNFAIYYV 141 (227)
Q Consensus 64 l~KI~~~KS~~GiSlKTQ~LyalVf~~R~--~~~~~~~y~~~t~~k~~~l~~s~~iiyli~~~~k~TYd~~~Dtf~~~~l 141 (227)
+..+.+.||..|+| .-.-|++++..-. ......+..-.++..+ -+-..+.++.+.-..| |++|-|...++
T Consensus 24 L~slvk~~nv~GvS--~~FWYLi~~tvgiSfyNlL~T~~~~fqi~sv-g~nl~lgivcLlv~~~-----rkkd~f~~~fi 95 (192)
T PHA02246 24 LVALVKAESVKGVS--NYFWYLIVATVGISFYNLLLTDASVFQIVSV-GLNLTLGIVCLLVASY-----RKKDYFSIPFI 95 (192)
T ss_pred HHHHhhhcccccHH--HHHHHHHHHHHHHHHHHHHhcCCceEEEeee-ehhhhhhhhheeeehh-----hccccccchHH
Confidence 46788999999998 4566777666542 1110000000011100 0011111222222222 34576776666
Q ss_pred hHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHhHHHHH
Q 027146 142 VVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFL 207 (227)
Q Consensus 142 iip~~vLa~i~~p~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~yR~l 207 (227)
++-++.+-.+- ...|+.-+-+.----.|-.||...+.|++..|....-.-..+|..=++
T Consensus 96 iifSLllfll~-------~~~evtQtVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~ 154 (192)
T PHA02246 96 IVFSLLLFLLS-------DFTALTQTVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLAS 154 (192)
T ss_pred HHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHH
Confidence 66555443331 123444444433445688999999999999998776555445554433
No 11
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=37.41 E-value=36 Score=24.51 Aligned_cols=42 Identities=19% Similarity=0.568 Sum_probs=19.9
Q ss_pred HHHHHHHHhc-ccccccccccccccchhhhHHHHHHHHHhCCC
Q 027146 114 TLWVIYMIRF-NLRSSYMEDKDNFAIYYVVVPCAVLALLIHPS 155 (227)
Q Consensus 114 s~~iiyli~~-~~k~TYd~~~Dtf~~~~liip~~vLa~i~~p~ 155 (227)
....++.+.. +..+.+..+.++.-....++|++++..+.-|+
T Consensus 39 ~~~l~~~~~~~~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~pS 81 (84)
T PF02790_consen 39 FYFLIYFLFNSKFPNKFFNHNNKLEIIWTIIPAIILLFLAFPS 81 (84)
T ss_dssp HHHHHHHHHHSSSS--S---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccccccccccccccccchhhhhhhhHHHHHHHHHHHhhh
Confidence 3334444444 33333333333444447788888877765543
No 12
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=37.12 E-value=1.5e+02 Score=23.08 Aligned_cols=45 Identities=24% Similarity=0.253 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhhHHHHHHhcCCccchHHHHHHHHhHHHHHHHHH
Q 027146 167 AFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAH 211 (227)
Q Consensus 167 tFSiyLEsvAILPQL~mlqk~g~vE~lTshYv~aLG~yR~ly~~n 211 (227)
+.+--+-.+|.+||+.-.-|+++-.+++--....+..++++-+++
T Consensus 10 ~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliy 54 (89)
T COG4095 10 TIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIY 54 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHH
Confidence 344456688999999999999998888888888888888776654
No 13
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=31.09 E-value=73 Score=28.00 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=27.1
Q ss_pred HhhhhhHHHHHHhcCCccchHHHHHHHHhHHHHHHH
Q 027146 174 AVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSC 209 (227)
Q Consensus 174 svAILPQL~mlqk~g~vE~lTshYv~aLG~yR~ly~ 209 (227)
+++-+||+....|++.+|.+.-.++..=-..=+.+.
T Consensus 16 ~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~ 51 (220)
T TIGR00951 16 SISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYV 51 (220)
T ss_pred HHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHH
Confidence 567899999999999999998888874333333333
No 14
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=28.49 E-value=6.4e+02 Score=25.81 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=27.0
Q ss_pred HHHHhCCCceehhHHHHHHHHHHHHHHHHHhcchHHHHHhhHHHHHHHH-HHHHHHhhccccc
Q 027146 13 TWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSIGIS-VLIYKLMKEKTCA 74 (227)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~llgdl~hl~s~~-iLl~KI~~~KS~~ 74 (227)
-|+|+..++.+-+..++.+++=..-.|.+...++..+ .|..=.+..+ +-+-|+.++|...
T Consensus 109 ~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~~~~f--ld~~i~lPL~llgie~~~~~~k~~ 169 (843)
T PF09586_consen 109 LYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSFNIMF--LDAMILLPLLLLGIERLLKEKKWW 169 (843)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4566665544112222222221112344444555555 3433333333 4457777777643
No 15
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=27.42 E-value=93 Score=24.59 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=19.6
Q ss_pred HhcchHHHHHhhHHHHHHHHHHHHHHhhc
Q 027146 42 VHDHDNLFVAAEAVHSIGISVLIYKLMKE 70 (227)
Q Consensus 42 ~~d~~~~~llgdl~hl~s~~iLl~KI~~~ 70 (227)
..+-.-+-+.+-++..+||+.|.+|+.+.
T Consensus 66 ~RNk~W~T~~S~~tS~isIL~LV~~~~KK 94 (100)
T PF06363_consen 66 ERNKAWFTVVSAVTSFISILLLVTKIFKK 94 (100)
T ss_pred HHcchHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455667778999999888764
No 16
>PTZ00154 40S ribosomal protein S17; Provisional
Probab=27.11 E-value=46 Score=27.76 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=20.3
Q ss_pred HHHhhHHHHHHHHHHHHHHhhccccccccchhhH
Q 027146 49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE 82 (227)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~KS~~GiSlKTQ~ 82 (227)
+++|...|+ .|-.+...+.|||+|.|+
T Consensus 49 rIAGYIThl-------mkri~~gpvrgis~klqe 75 (134)
T PTZ00154 49 KIAGFVTHL-------MKRIQKGPVRGISLKLQE 75 (134)
T ss_pred HHHHHHHHH-------HhhhccCCccccceehhH
Confidence 456666665 455667789999999998
No 17
>PF14007 YtpI: YtpI-like protein
Probab=22.74 E-value=2e+02 Score=22.18 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=36.1
Q ss_pred CCCChHHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHhh
Q 027146 3 APKRPIHAVSTWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSIGISVLIYKLMK 69 (227)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~llgdl~hl~s~~iLl~KI~~ 69 (227)
|.++|.++ +|.+. |-.+++|.++..+.+-- .+.++...-.+.|-..=++|..-+..-++.
T Consensus 21 Rs~~p~~k--~~~~a---ka~ialG~fl~~fgiNQ--~~~~~st~~~iV~~ifl~lG~~n~~~G~r~ 80 (89)
T PF14007_consen 21 RSKDPMEK--KWYSA---KANIALGIFLILFGINQ--MFLFGSTVRLIVGAIFLVLGLFNLFAGIRA 80 (89)
T ss_pred hcCCHHHH--HHHHH---HHHHHHHHHHHHHHHHH--HHHcccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56777776 55543 45689999998886433 223444444446666666666655544433
No 18
>PF02109 DAD: DAD family; InterPro: IPR003038 Members of this family are thought to be integral membrane proteins. Some members of this family have been shown to cause apoptosis if mutated [], these proteins are known as DAD for defender against death. The family also includes the epsilon subunit of the oligosaccharyltransferase that is involved in N-linked glycosylation [].; GO: 0016021 integral to membrane
Probab=20.21 E-value=3.9e+02 Score=21.59 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=37.4
Q ss_pred HHHHHHhCCCceeh---hHHHHHHHHHHHHHHHHHhcchHHHH--HhhHHHHHHHHHHHHHHhh
Q 027146 11 VSTWVRRQPPKVKA---FLAVVSGMAALVLLRFIVHDHDNLFV--AAEAVHSIGISVLIYKLMK 69 (227)
Q Consensus 11 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~~~~l--lgdl~hl~s~~iLl~KI~~ 69 (227)
...+.++.++|+|+ ++.+.+.+-++-++|-..- |++.+- +|.+.-+.|-.+|...++.
T Consensus 12 ~~~Y~~~Tp~rlkliD~fl~f~~~~gilQfvYc~lv-gtFPFNaFLsGf~s~VG~fVL~vsLR~ 74 (112)
T PF02109_consen 12 WQSYLKKTPQRLKLIDAFLAFLVLTGILQFVYCILV-GTFPFNAFLSGFISCVGQFVLTVSLRI 74 (112)
T ss_pred HHHHHHhCCchhhhHHHHHHHHHHHHHHHHhHheee-cCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778999999998 4555555555556666555 555433 6777777777777644433
Done!