Query 027146
Match_columns 227
No_of_seqs 111 out of 356
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:52:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_V RPS17E; ribosome, trans 59.8 4.4 0.00015 32.4 2.2 27 49-82 49-75 (130)
2 3u5c_R RP51A, 40S ribosomal pr 21.5 60 0.0021 26.0 2.8 27 49-82 49-75 (136)
3 1v54_B Cytochrome C oxidase po 18.6 87 0.003 26.5 3.5 20 135-154 60-79 (227)
4 3iz6_Q 40S ribosomal protein S 13.4 75 0.0026 25.6 1.6 27 49-82 49-75 (141)
5 2ckc_A Chromodomain-helicase-D 12.6 1.4E+02 0.0047 21.8 2.6 16 5-20 43-58 (80)
6 2lat_A Dolichyl-diphosphooligo 12.3 2E+02 0.0069 18.0 3.0 18 24-43 12-29 (37)
7 1rkl_A Dolichyl-diphosphooligo 11.1 2.4E+02 0.0082 17.5 3.1 20 23-44 11-30 (36)
8 2gsm_B Cytochrome C oxidase su 10.1 1.8E+02 0.006 25.1 3.0 16 139-154 78-93 (262)
9 3g36_A Protein DPY-30 homolog; 8.6 1.3E+02 0.0044 20.2 1.2 21 2-22 31-51 (55)
10 2exn_A Hypothetical protein BO 7.6 1.1E+02 0.0036 23.6 0.5 14 68-81 7-20 (136)
No 1
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=59.85 E-value=4.4 Score=32.37 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=21.5
Q ss_pred HHHhhHHHHHHHHHHHHHHhhccccccccchhhH
Q 027146 49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE 82 (227)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~KS~~GiSlKTQ~ 82 (227)
+++|...| +.|-.+...+.|||+|.|+
T Consensus 49 kIAGYVTh-------lmkriq~gpvrgis~klqE 75 (130)
T 2xzm_V 49 KIAGFATH-------LMKRIQKGPVRGISLKVQE 75 (130)
T ss_dssp HHHHHHHH-------HHHHTTTSCCTTCCCTTTT
T ss_pred cccchhhh-------HhhhcccCcccccccchhH
Confidence 45777777 4566677889999999998
No 2
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=21.52 E-value=60 Score=25.97 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=19.7
Q ss_pred HHHhhHHHHHHHHHHHHHHhhccccccccchhhH
Q 027146 49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE 82 (227)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~KS~~GiSlKTQ~ 82 (227)
+++|..+|+ .|-.+.-.+.|||+|.|+
T Consensus 49 kIAGYVThL-------mKriq~GpvrgisiklqE 75 (136)
T 3u5c_R 49 KIAGYTTHL-------MKRIQKGPVRGISFKLQE 75 (136)
T ss_dssp HHHHHHHHH-------HHHHTTSCBTTBCCSHHH
T ss_pred ehhhhhhhh-------hcccccCCcccceeehhH
Confidence 346666664 455666779999999998
No 3
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=18.57 E-value=87 Score=26.47 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=12.2
Q ss_pred cccchhhhHHHHHHHHHhCC
Q 027146 135 NFAIYYVVVPCAVLALLIHP 154 (227)
Q Consensus 135 tf~~~~liip~~vLa~i~~p 154 (227)
+.-..+.++|+++|..+.-|
T Consensus 60 ~lEiiWTiiP~iil~~la~p 79 (227)
T 1v54_B 60 EVETIWTILPAIILILIALP 79 (227)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred eeEEeeehHHHHHHHHHHHH
Confidence 34444677887777665443
No 4
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=13.45 E-value=75 Score=25.56 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=19.9
Q ss_pred HHHhhHHHHHHHHHHHHHHhhccccccccchhhH
Q 027146 49 FVAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE 82 (227)
Q Consensus 49 ~llgdl~hl~s~~iLl~KI~~~KS~~GiSlKTQ~ 82 (227)
+++|..+|+ .|-.+.-.+.|||+|.|+
T Consensus 49 kIAGYVThl-------mKriq~GpvrgisiklqE 75 (141)
T 3iz6_Q 49 KVAGFTTHL-------MRRIQRGPVRGISLKLQE 75 (141)
T ss_dssp HHHHHHHHH-------HHHHCSCCCCCSSCCSSC
T ss_pred hhhheeeeh-------hhccccCCccccceehhH
Confidence 456666664 455566678999999998
No 5
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=12.56 E-value=1.4e+02 Score=21.83 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=12.9
Q ss_pred CChHHHHHHHHHhCCC
Q 027146 5 KRPIHAVSTWVRRQPP 20 (227)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (227)
-.|.+.+..|||+|+.
T Consensus 43 AP~~KdL~dWLrqhP~ 58 (80)
T 2ckc_A 43 APKNKDLVEWLKLHPT 58 (80)
T ss_dssp SCBHHHHHHHHHHCTT
T ss_pred CccccCHHHHHHHCCC
Confidence 4566779999999986
No 6
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=12.35 E-value=2e+02 Score=17.95 Aligned_cols=18 Identities=33% Similarity=0.240 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 027146 24 AFLAVVSGMAALVLLRFIVH 43 (227)
Q Consensus 24 ~~~~~~~~~~~~~~l~~~~~ 43 (227)
..+|++.. +++++||+.+
T Consensus 12 n~lG~~~~--~LIVlYH~v~ 29 (37)
T 2lat_A 12 NMLGVSLF--LLVVLYHYVA 29 (37)
T ss_dssp HHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHh
Confidence 34555544 4458999875
No 7
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=11.15 E-value=2.4e+02 Score=17.51 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=12.4
Q ss_pred ehhHHHHHHHHHHHHHHHHHhc
Q 027146 23 KAFLAVVSGMAALVLLRFIVHD 44 (227)
Q Consensus 23 ~~~~~~~~~~~~~~~l~~~~~d 44 (227)
...+|.+..+ ++.+||+..-
T Consensus 11 an~lG~~~~~--LIvlYH~v~~ 30 (36)
T 1rkl_A 11 AITFGIVMMT--LIVIYHAVDS 30 (36)
T ss_dssp HHHHHHHHHH--HHHHHHHHTS
T ss_pred HHHHHHHHHH--HHHHHHHHhc
Confidence 3455555544 4589998764
No 8
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=10.09 E-value=1.8e+02 Score=25.08 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHhCC
Q 027146 139 YYVVVPCAVLALLIHP 154 (227)
Q Consensus 139 ~~liip~~vLa~i~~p 154 (227)
.+.++|+++|..+.-|
T Consensus 78 iWTiiP~iILi~la~p 93 (262)
T 2gsm_B 78 AWTIVPIVILVAIGAF 93 (262)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHH
Confidence 3667777776665544
No 9
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=8.59 E-value=1.3e+02 Score=20.19 Aligned_cols=21 Identities=14% Similarity=0.471 Sum_probs=17.2
Q ss_pred CCCCChHHHHHHHHHhCCCce
Q 027146 2 RAPKRPIHAVSTWVRRQPPKV 22 (227)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (227)
.|..||++-+-.|+-+++++.
T Consensus 31 ~rP~DPi~~LA~~Ll~~~~~~ 51 (55)
T 3g36_A 31 ERPPNPIEFLASYLLKNKAQF 51 (55)
T ss_dssp HCCSCHHHHHHHHHHHHGGGG
T ss_pred hCCCCHHHHHHHHHHHhCccc
Confidence 367899999999998888764
No 10
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=7.56 E-value=1.1e+02 Score=23.55 Aligned_cols=14 Identities=7% Similarity=0.154 Sum_probs=11.0
Q ss_pred hhccccccccchhh
Q 027146 68 MKEKTCAGLSLKSQ 81 (227)
Q Consensus 68 ~~~KS~~GiSlKTQ 81 (227)
+-=|||.|++++.=
T Consensus 7 YPIKSc~g~~l~~a 20 (136)
T 2exn_A 7 QPIAECGATTQSEA 20 (136)
T ss_dssp EEETTTEEECCGGG
T ss_pred eccccCCceecCcc
Confidence 34599999999873
Done!