Query 027146
Match_columns 227
No_of_seqs 111 out of 356
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 08:52:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027146.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027146hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 34.4 11 0.00078 25.9 2.4 32 124-155 49-80 (90)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 18.6 39 0.0028 22.9 3.0 16 140-155 75-90 (100)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.8 2.1E+02 0.015 19.2 6.9 15 140-154 81-95 (107)
4 d2exna1 b.165.1.1 (A:1-128) Hy 7.8 40 0.0029 23.9 -0.0 14 67-80 6-19 (128)
5 d1ekza_ d.50.1.1 (A:) Staufen, 7.6 1.5E+02 0.011 18.6 3.0 22 2-23 4-25 (76)
6 d2eyqa2 c.37.1.19 (A:349-465) 6.9 1.1E+02 0.0081 20.8 2.2 20 3-22 18-37 (117)
7 d2ckca1 d.76.2.1 (A:2563-2622) 6.7 1.6E+02 0.011 18.6 2.6 17 4-20 22-38 (60)
8 d2fm9a1 a.257.1.1 (A:49-263) C 6.7 65 0.0048 25.3 0.8 12 171-182 195-206 (215)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 6.6 1.7E+02 0.012 19.2 2.9 13 140-152 66-78 (91)
10 d2dixa1 d.50.1.1 (A:7-79) Inte 5.7 1.9E+02 0.014 17.8 2.6 18 4-21 1-18 (73)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=34.44 E-value=11 Score=25.87 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=17.9
Q ss_pred ccccccccccccccchhhhHHHHHHHHHhCCC
Q 027146 124 NLRSSYMEDKDNFAIYYVVVPCAVLALLIHPS 155 (227)
Q Consensus 124 ~~k~TYd~~~Dtf~~~~liip~~vLa~i~~p~ 155 (227)
++++.+-.+..+.-....++|+++|..+.-|+
T Consensus 49 ~~~~~~~~~~~~lEiiWTiiP~lILi~ia~PS 80 (90)
T d1v54b2 49 KLTHTSTMDAQEVETIWTILPAIILILIALPS 80 (90)
T ss_dssp SCCCCSCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 33333333333444456777877777776655
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=18.64 E-value=39 Score=22.94 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHhCCC
Q 027146 140 YVVVPCAVLALLIHPS 155 (227)
Q Consensus 140 ~liip~~vLa~i~~p~ 155 (227)
..++|+++|..+.-|+
T Consensus 75 WTviP~lILi~l~~pS 90 (100)
T d3dtub2 75 WTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777766655443
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=11.78 E-value=2.1e+02 Score=19.18 Aligned_cols=15 Identities=20% Similarity=0.343 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHhCC
Q 027146 140 YVVVPCAVLALLIHP 154 (227)
Q Consensus 140 ~liip~~vLa~i~~p 154 (227)
..++|+++|..+.-|
T Consensus 81 WTviP~lIL~~laip 95 (107)
T d3ehbb2 81 WTLVPVLILVAIGAF 95 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555544433
No 4
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=7.79 E-value=40 Score=23.92 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=10.7
Q ss_pred Hhhccccccccchh
Q 027146 67 LMKEKTCAGLSLKS 80 (227)
Q Consensus 67 I~~~KS~~GiSlKT 80 (227)
++-=|||.|+|+..
T Consensus 6 ~~PIKsc~g~~~~~ 19 (128)
T d2exna1 6 YQPIAECGATTQSE 19 (128)
T ss_dssp EEEETTTEEECCGG
T ss_pred eecccccCCccccc
Confidence 34569999999854
No 5
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=7.60 E-value=1.5e+02 Score=18.57 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=17.6
Q ss_pred CCCCChHHHHHHHHHhCCCcee
Q 027146 2 RAPKRPIHAVSTWVRRQPPKVK 23 (227)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (227)
+..+||+..+.+|.++++..+.
T Consensus 4 ~~~k~Pvs~L~E~~q~~~~~~~ 25 (76)
T d1ekza_ 4 GDKKSPISQVHEIGIKRNMTVH 25 (76)
T ss_dssp CCCSCHHHHHHHHHHHTTCCCE
T ss_pred CCCCCHHHHHHHHHHhCCCCCe
Confidence 4568999999999988877653
No 6
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=6.90 E-value=1.1e+02 Score=20.82 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=16.3
Q ss_pred CCCChHHHHHHHHHhCCCce
Q 027146 3 APKRPIHAVSTWVRRQPPKV 22 (227)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (227)
+.++|.+.+.+|++++..+|
T Consensus 18 ~~~~p~~~L~~~i~~~~~~V 37 (117)
T d2eyqa2 18 QQKAPLDALRKFLETFDGPV 37 (117)
T ss_dssp SSSSTTHHHHHHHTTCCSCC
T ss_pred chhcHHHHHHHHHHhCCCeE
Confidence 45799999999998876664
No 7
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.66 E-value=1.6e+02 Score=18.59 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=13.3
Q ss_pred CCChHHHHHHHHHhCCC
Q 027146 4 PKRPIHAVSTWVRRQPP 20 (227)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (227)
.-+....+..||+.|+.
T Consensus 22 ~AP~~~~L~~WL~~hP~ 38 (60)
T d2ckca1 22 DAPKNKDLVEWLKLHPT 38 (60)
T ss_dssp SSCBHHHHHHHHHHCTT
T ss_pred CCcCHHHHHHHHHHCCC
Confidence 34567779999999985
No 8
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=6.65 E-value=65 Score=25.34 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=10.1
Q ss_pred HHHHhhhhhHHH
Q 027146 171 YLEAVSVLPQLR 182 (227)
Q Consensus 171 yLEsvAILPQL~ 182 (227)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478999999974
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.57 E-value=1.7e+02 Score=19.19 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHHh
Q 027146 140 YVVVPCAVLALLI 152 (227)
Q Consensus 140 ~liip~~vLa~i~ 152 (227)
..++|++++..+.
T Consensus 66 WtiIP~iil~~ia 78 (91)
T d1fftb2 66 VWTVPILIIIFLA 78 (91)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5567776665554
No 10
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.67 E-value=1.9e+02 Score=17.82 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=14.0
Q ss_pred CCChHHHHHHHHHhCCCc
Q 027146 4 PKRPIHAVSTWVRRQPPK 21 (227)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (227)
+|||+..+.+|.+++...
T Consensus 1 gK~Pis~L~E~~qk~~~~ 18 (73)
T d2dixa1 1 GKTPIQVLHEYGMKTKNI 18 (73)
T ss_dssp CCCHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHhCCCC
Confidence 478999999998887643
Done!