Query 027147
Match_columns 227
No_of_seqs 198 out of 1587
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01750 fabZ beta-hydroxyacy 100.0 1.2E-37 2.6E-42 249.6 19.9 138 86-225 1-140 (140)
2 COG0764 FabA 3-hydroxymyristoy 100.0 3.6E-37 7.8E-42 251.2 18.8 142 83-226 2-144 (147)
3 PRK00006 fabZ (3R)-hydroxymyri 100.0 1.8E-35 3.9E-40 239.0 21.0 141 83-226 5-145 (147)
4 cd01287 FabA FabA, beta-hydrox 100.0 5.9E-34 1.3E-38 233.2 18.2 129 93-222 2-143 (150)
5 PF07977 FabA: FabA-like domai 100.0 6.2E-34 1.4E-38 228.1 17.4 127 94-220 1-138 (138)
6 cd01288 FabZ FabZ is a 17kD be 100.0 4.9E-33 1.1E-37 218.4 19.1 130 94-225 1-130 (131)
7 cd00493 FabA_FabZ FabA/Z, beta 100.0 2E-32 4.3E-37 214.4 19.2 128 95-224 1-130 (131)
8 cd01289 FabA_like Domain of un 100.0 2.4E-32 5.3E-37 220.1 18.5 133 89-226 2-137 (138)
9 PRK13188 bifunctional UDP-3-O- 100.0 6.9E-32 1.5E-36 254.3 21.3 147 78-226 314-460 (464)
10 TIGR01749 fabA beta-hydroxyacy 100.0 3.7E-31 8.1E-36 220.5 18.1 122 94-219 26-155 (169)
11 PRK05174 3-hydroxydecanoyl-(ac 100.0 2.6E-30 5.6E-35 216.0 19.1 126 92-221 27-160 (172)
12 PRK04424 fatty acid biosynthes 99.7 9.7E-16 2.1E-20 129.4 16.5 110 101-225 72-181 (185)
13 COG4706 Predicted 3-hydroxylac 99.7 5.3E-17 1.2E-21 130.9 7.5 122 90-217 12-138 (161)
14 cd03451 FkbR2 FkbR2 is a Strep 99.1 5.7E-10 1.2E-14 89.1 9.4 99 121-226 39-143 (146)
15 cd03446 MaoC_like MoaC_like 98.8 4.6E-08 1E-12 77.5 10.9 87 134-225 49-140 (140)
16 cd03449 R_hydratase (R)-hydrat 98.7 3.3E-07 7.2E-12 70.9 12.3 84 134-225 44-128 (128)
17 cd03452 MaoC_C MaoC_C The C-t 98.5 1.1E-06 2.5E-11 70.6 10.7 86 134-226 49-139 (142)
18 cd03454 YdeM YdeM is a Bacillu 98.4 2.4E-06 5.3E-11 67.9 10.7 87 134-225 47-139 (140)
19 cd03441 R_hydratase_like (R)-h 98.4 4.4E-06 9.4E-11 64.3 10.9 83 134-223 41-126 (127)
20 cd03447 FAS_MaoC FAS_MaoC, the 98.4 7.2E-06 1.6E-10 65.0 11.9 82 134-224 41-124 (126)
21 cd03455 SAV4209 SAV4209 is a S 98.4 3.8E-06 8.2E-11 65.6 10.2 83 131-224 40-123 (123)
22 cd03453 SAV4209_like SAV4209_l 98.3 7.6E-06 1.6E-10 64.3 11.2 82 132-223 42-126 (127)
23 PRK13692 (3R)-hydroxyacyl-ACP 98.3 1.1E-05 2.3E-10 66.7 11.7 54 173-226 89-145 (159)
24 PRK13691 (3R)-hydroxyacyl-ACP 98.3 1.2E-05 2.7E-10 66.9 11.6 54 172-225 88-144 (166)
25 cd03450 NodN NodN (nodulation 98.2 1.9E-05 4.1E-10 64.5 11.5 88 134-225 55-147 (149)
26 cd03440 hot_dog The hotdog fol 98.2 6.6E-05 1.4E-09 51.3 12.3 85 134-223 14-99 (100)
27 COG2030 MaoC Acyl dehydratase 98.2 3.4E-05 7.4E-10 63.5 11.6 88 131-225 64-154 (159)
28 PRK08190 bifunctional enoyl-Co 98.2 2.5E-05 5.3E-10 74.7 12.1 85 134-226 57-142 (466)
29 PF03756 AfsA: A-factor biosyn 98.1 0.00048 1E-08 54.5 16.5 108 114-224 21-131 (132)
30 TIGR02286 PaaD phenylacetic ac 98.1 0.00035 7.7E-09 53.7 15.0 106 105-225 7-113 (114)
31 PF14765 PS-DH: Polyketide syn 98.0 0.0002 4.2E-09 62.8 13.1 110 104-224 6-125 (295)
32 cd03442 BFIT_BACH Brown fat-in 97.9 0.00032 7E-09 53.3 12.6 84 136-225 23-112 (123)
33 cd00586 4HBT 4-hydroxybenzoyl- 97.9 0.00055 1.2E-08 49.9 12.4 86 138-225 18-108 (110)
34 cd03448 HDE_HSD HDE_HSD The R 97.8 0.00012 2.6E-09 57.8 8.8 77 131-220 41-117 (122)
35 PF01575 MaoC_dehydratas: MaoC 97.8 0.00013 2.7E-09 57.0 8.8 73 131-211 47-119 (122)
36 PRK13693 (3R)-hydroxyacyl-ACP 97.8 0.00044 9.6E-09 55.9 11.4 84 132-225 52-141 (142)
37 cd03443 PaaI_thioesterase PaaI 97.8 0.003 6.5E-08 47.3 14.9 106 106-224 6-112 (113)
38 PF03061 4HBT: Thioesterase su 97.7 0.0011 2.5E-08 46.4 11.3 74 137-215 3-76 (79)
39 PRK11563 bifunctional aldehyde 97.7 0.00016 3.4E-09 72.2 8.6 86 134-226 584-674 (675)
40 TIGR02278 PaaN-DH phenylacetic 97.6 0.00018 3.9E-09 71.7 8.6 86 134-226 572-662 (663)
41 PLN02864 enoyl-CoA hydratase 97.5 0.001 2.2E-08 60.6 10.4 82 130-224 223-304 (310)
42 PRK10293 acyl-CoA esterase; Pr 97.4 0.02 4.3E-07 46.1 16.5 127 86-225 8-135 (136)
43 TIGR00369 unchar_dom_1 unchara 97.4 0.0075 1.6E-07 46.3 12.8 50 173-225 67-117 (117)
44 PLN02322 acyl-CoA thioesterase 97.3 0.028 6.1E-07 46.4 16.1 108 105-225 19-133 (154)
45 KOG3328 HGG motif-containing t 97.3 0.0068 1.5E-07 49.7 12.0 109 105-226 30-140 (148)
46 PRK10254 thioesterase; Provisi 97.2 0.068 1.5E-06 43.1 17.1 127 87-226 9-136 (137)
47 PRK11688 hypothetical protein; 97.0 0.039 8.5E-07 44.9 14.2 50 174-226 104-154 (154)
48 PF13452 MaoC_dehydrat_N: N-te 96.9 0.0054 1.2E-07 48.0 8.2 53 166-218 73-131 (132)
49 COG2050 PaaI HGG motif-contain 96.9 0.047 1E-06 43.6 13.6 108 105-226 27-137 (141)
50 TIGR02447 yiiD_Cterm thioester 96.6 0.13 2.7E-06 41.3 13.8 109 105-226 15-137 (138)
51 PRK10694 acyl-CoA esterase; Pr 96.6 0.069 1.5E-06 42.8 12.1 82 137-224 28-118 (133)
52 TIGR02799 thio_ybgC tol-pal sy 96.5 0.06 1.3E-06 41.2 11.1 57 166-224 51-107 (126)
53 PRK10800 acyl-CoA thioesterase 96.4 0.15 3.3E-06 39.6 12.9 58 166-225 52-110 (130)
54 PF13279 4HBT_2: Thioesterase- 96.2 0.14 3.1E-06 38.9 11.6 59 165-225 41-103 (121)
55 COG0824 FcbC Predicted thioest 96.2 0.091 2E-06 42.0 10.9 58 166-225 55-112 (137)
56 cd00556 Thioesterase_II Thioes 95.7 0.056 1.2E-06 39.4 7.0 49 174-224 49-98 (99)
57 COG1607 Acyl-CoA hydrolase [Li 95.6 0.36 7.7E-06 40.1 12.0 77 142-224 35-117 (157)
58 KOG1206 Peroxisomal multifunct 95.5 0.0034 7.4E-08 55.1 -0.1 84 94-192 147-238 (272)
59 TIGR00051 acyl-CoA thioester h 95.5 0.52 1.1E-05 35.1 11.9 54 166-221 47-101 (117)
60 PF14539 DUF4442: Domain of un 94.9 0.38 8.2E-06 38.2 10.0 109 105-225 22-132 (132)
61 PF14765 PS-DH: Polyketide syn 94.8 0.41 9E-06 41.7 11.0 125 84-221 152-283 (295)
62 TIGR00189 tesB acyl-CoA thioes 94.7 0.37 8.1E-06 42.2 10.3 49 174-224 50-98 (271)
63 cd03445 Thioesterase_II_repeat 94.6 1.1 2.3E-05 33.6 11.3 49 174-224 45-93 (94)
64 PLN02647 acyl-CoA thioesterase 94.2 1.6 3.4E-05 41.9 14.0 85 138-224 111-207 (437)
65 PF13622 4HBT_3: Thioesterase- 94.1 1 2.2E-05 38.8 11.7 49 174-225 40-88 (255)
66 PRK10526 acyl-CoA thioesterase 93.9 0.7 1.5E-05 41.4 10.6 78 139-224 32-109 (286)
67 COG5496 Predicted thioesterase 93.4 3.4 7.4E-05 33.2 13.8 84 137-225 30-113 (130)
68 PLN02647 acyl-CoA thioesterase 93.4 1.8 4E-05 41.4 12.9 80 142-225 312-400 (437)
69 PRK07531 bifunctional 3-hydrox 90.7 2.1 4.5E-05 41.4 10.0 51 173-225 401-452 (495)
70 PLN02864 enoyl-CoA hydratase 90.0 3 6.5E-05 38.0 9.9 58 168-225 94-155 (310)
71 PF09500 YiiD_Cterm: Putative 89.4 9.6 0.00021 31.1 11.4 110 105-226 21-143 (144)
72 PLN02868 acyl-CoA thioesterase 88.0 4.6 9.9E-05 37.9 10.0 91 126-224 144-235 (413)
73 TIGR02813 omega_3_PfaA polyket 86.6 3.7 8.1E-05 47.3 9.7 119 93-218 2444-2565(2582)
74 PF01643 Acyl-ACP_TE: Acyl-ACP 84.8 21 0.00045 31.3 11.9 82 141-225 24-118 (261)
75 TIGR02813 omega_3_PfaA polyket 84.5 1.8 3.8E-05 49.9 5.9 59 116-185 2298-2359(2582)
76 COG4109 Predicted transcriptio 80.0 9.2 0.0002 36.0 7.9 77 142-225 354-430 (432)
77 PLN02370 acyl-ACP thioesterase 77.0 71 0.0015 30.6 18.9 95 127-225 148-254 (419)
78 PF10989 DUF2808: Protein of u 76.6 7 0.00015 31.6 5.5 42 174-215 92-133 (146)
79 COG1946 TesB Acyl-CoA thioeste 74.5 17 0.00037 33.0 7.9 48 176-225 63-110 (289)
80 smart00826 PKS_DH PKS_DH. 70.9 25 0.00054 26.8 7.3 56 120-185 21-78 (167)
81 PF02551 Acyl_CoA_thio: Acyl-C 68.8 20 0.00044 28.9 6.3 50 169-220 75-127 (131)
82 KOG3016 Acyl-CoA thioesterase 68.7 88 0.0019 28.6 11.0 81 132-224 35-115 (294)
83 cd03444 Thioesterase_II_repeat 63.0 43 0.00094 25.1 7.0 54 167-222 46-101 (104)
84 PF01643 Acyl-ACP_TE: Acyl-ACP 61.7 45 0.00097 29.2 7.8 91 116-222 167-258 (261)
85 KOG2763 Acyl-CoA thioesterase 57.5 36 0.00077 32.0 6.6 46 166-211 241-286 (357)
86 COG3777 Uncharacterized conser 56.7 26 0.00057 31.4 5.4 69 136-222 202-272 (273)
87 COG1946 TesB Acyl-CoA thioeste 54.9 35 0.00077 31.1 6.0 51 168-220 225-277 (289)
88 TIGR00189 tesB acyl-CoA thioes 49.5 68 0.0015 27.9 6.9 53 169-223 214-268 (271)
89 PF03658 Ub-RnfH: RnfH family 49.2 24 0.00051 26.3 3.3 49 139-190 22-71 (84)
90 PF13622 4HBT_3: Thioesterase- 48.5 1.6E+02 0.0035 24.9 9.1 57 167-225 196-255 (255)
91 PRK10526 acyl-CoA thioesterase 44.0 82 0.0018 28.1 6.7 55 168-224 225-281 (286)
92 COG3884 FatA Acyl-ACP thioeste 42.1 61 0.0013 28.8 5.3 22 174-195 197-218 (250)
93 TIGR02480 fliN flagellar motor 36.8 56 0.0012 23.3 3.7 43 171-223 17-61 (77)
94 PLN02868 acyl-CoA thioesterase 35.5 80 0.0017 29.6 5.5 47 173-221 362-409 (413)
95 PF01052 SpoA: Surface present 30.5 50 0.0011 23.2 2.5 33 180-222 28-60 (77)
96 PF12119 DUF3581: Protein of u 28.3 4.1E+02 0.0088 23.3 9.8 62 165-226 148-209 (218)
97 PRK06789 flagellar motor switc 26.6 1.2E+02 0.0025 22.1 3.8 36 179-224 26-61 (74)
98 COG0335 RplS Ribosomal protein 24.9 1.5E+02 0.0032 23.4 4.4 28 181-209 21-48 (115)
99 PF08865 DUF1830: Domain of un 24.6 58 0.0013 23.3 1.9 27 166-192 12-38 (68)
100 PLN02370 acyl-ACP thioesterase 24.2 6.4E+02 0.014 24.2 9.6 91 119-224 306-401 (419)
101 PF06059 DUF930: Domain of Unk 23.2 2.2E+02 0.0048 21.8 5.0 50 174-223 36-85 (101)
102 smart00769 WHy Water Stress an 22.9 3.1E+02 0.0068 20.1 5.8 48 174-221 4-52 (100)
103 PF12969 DUF3857: Domain of Un 20.9 3.3E+02 0.0071 21.5 6.0 47 179-225 88-134 (177)
104 PRK08158 type III secretion sy 20.8 1.1E+02 0.0024 28.1 3.4 47 168-224 236-284 (303)
105 PRK08916 flagellar motor switc 20.5 1.4E+02 0.003 23.5 3.5 46 168-223 51-98 (116)
106 PF08770 SoxZ: Sulphur oxidati 20.4 3.5E+02 0.0076 20.4 5.6 51 175-225 3-64 (100)
107 COG1886 FliN Flagellar motor s 20.3 1.5E+02 0.0033 23.6 3.8 35 180-224 91-125 (136)
108 PF11355 DUF3157: Protein of u 20.3 4E+02 0.0087 23.0 6.5 51 174-225 101-154 (199)
109 PRK06033 hypothetical protein; 20.2 1.7E+02 0.0037 21.4 3.7 32 181-222 28-59 (83)
110 PRK08035 type III secretion sy 20.0 1.3E+02 0.0029 27.8 3.8 36 179-224 270-305 (323)
No 1
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=100.00 E-value=1.2e-37 Score=249.55 Aligned_cols=138 Identities=54% Similarity=0.946 Sum_probs=124.1
Q ss_pred CHHHHHHhCCCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhccccc--CCC
Q 027147 86 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEV--GGS 163 (227)
Q Consensus 86 ~~~~I~~lLPHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~--~~~ 163 (227)
+.++|.++||||+||+|||+|+++++|+++++.|+|+.|++||+||||++|++|||+++|+|||+++++++.... .+.
T Consensus 1 ~~~~i~~~lPhr~P~l~vD~i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~ 80 (140)
T TIGR01750 1 DIQEIMELLPHRYPFLLVDRILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGK 80 (140)
T ss_pred CHHHHHHhCCCCCCeeeEEEEEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCC
Confidence 457899999999999999999999988899999999999999999999999999999999999999988764321 223
Q ss_pred cceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEe
Q 027147 164 RENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMAT 225 (227)
Q Consensus 164 ~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i 225 (227)
...+++.+++++||+++|+|||+|++++++.+. +.+++.++++++++|+++++|++++++
T Consensus 81 ~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~--~~~~~~~~~~~~~~g~~va~~~~~~~~ 140 (140)
T TIGR01750 81 GKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKK--RRKIGKFKGEATVDGKVVAEAEITFAI 140 (140)
T ss_pred CcEEEEeecceeEECCccCCCCEEEEEEEEEEc--cCCEEEEEEEEEECCEEEEEEEEEEEC
Confidence 457899999999999999999999999999864 457899999999999999999999864
No 2
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=100.00 E-value=3.6e-37 Score=251.19 Aligned_cols=142 Identities=50% Similarity=0.840 Sum_probs=127.4
Q ss_pred CCCCHHHHHHhCCCCCCeeeeeEEEEE-cCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccC
Q 027147 83 TVMDINQIRDILPHRFPFLLVDRVIEY-NPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVG 161 (227)
Q Consensus 83 ~~l~~~~I~~lLPHr~PmllVDrI~~~-~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~ 161 (227)
..+++++|.+++|||+||||||||+++ ++|..+.++|+|+.|+|||.||||++||||||+++|+|||++++++++....
T Consensus 2 ~~~~~~~i~~~lphryPfLmvDrv~~~~~~g~~i~a~k~Vt~nepfF~gHFP~~PimPGVLileamaQ~~g~~~~~~~~~ 81 (147)
T COG0764 2 LAIDIGEILELLPHRYPFLLVDRVLEIDEEGKRIVAIKNVTINEPFFTGHFPGDPIMPGVLILEAMAQAAGFLLGWLLGN 81 (147)
T ss_pred CccCHHHHhhhccccCChhheeeeeeeccCCcEEEEEEccCCCCCeeCCcCCCCCCcchhHHHHHHHHHHHHHHhccccC
Confidence 468899999999999999999999995 4566789999999999999999999999999999999999999998775421
Q ss_pred CCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEec
Q 027147 162 GSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMATG 226 (227)
Q Consensus 162 ~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i~ 226 (227)
....+|+.+++++||+++|.|||++.+++++.+.+ ..++.++.++++|||++++++++.++..
T Consensus 82 -~~~~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~-~~~~~~~~~~a~Vdg~~v~~a~~~~~~~ 144 (147)
T COG0764 82 -KGKLGYFLGIDNAKFKRPVLPGDQLELEVKLLKSR-RLGIGKAKGVATVDGKVVAEAELLFAGV 144 (147)
T ss_pred -CccEEEEEEecceeecCccCCCCEEEEEEEEEEec-ccceEEEEEEEEECCEEEEEEEEEEEEe
Confidence 12589999999999999999999999999998742 3689999999999999999999998864
No 3
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=100.00 E-value=1.8e-35 Score=238.96 Aligned_cols=141 Identities=53% Similarity=0.944 Sum_probs=127.7
Q ss_pred CCCCHHHHHHhCCCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCC
Q 027147 83 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGG 162 (227)
Q Consensus 83 ~~l~~~~I~~lLPHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~ 162 (227)
..|+.++|+++||||+||+|||+|+++++|+++++.++|+.|++||+||||++|++||++++|+|||+++++.+... ..
T Consensus 5 ~~~~~~~i~~~lPhr~p~l~vD~i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~-~~ 83 (147)
T PRK00006 5 MMLDIEEILKLLPHRYPFLLVDRVLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSE-EN 83 (147)
T ss_pred cccCHHHHHHhCCCCCCeeeEEEEEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCc-Cc
Confidence 45789999999999999999999999998889999999999999999999999999999999999999998775432 22
Q ss_pred CcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEec
Q 027147 163 SRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMATG 226 (227)
Q Consensus 163 ~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i~ 226 (227)
....+++.+++++||++||+|||+|++++++... +.+++.++++++++|++|++|++++++.
T Consensus 84 ~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~--~~~~v~~~~~~~~~g~~v~~~~~~~~~~ 145 (147)
T PRK00006 84 KGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQ--RRGIWKFKGVATVDGKLVAEAELMFAIR 145 (147)
T ss_pred CCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEe--eCCEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 3457899999999999999999999999999864 4589999999999999999999999874
No 4
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=100.00 E-value=5.9e-34 Score=233.17 Aligned_cols=129 Identities=26% Similarity=0.407 Sum_probs=113.8
Q ss_pred hCCCCCCeeeeeEEEEEcC--Cc----EEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccC----C
Q 027147 93 ILPHRFPFLLVDRVIEYNP--GV----SAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVG----G 162 (227)
Q Consensus 93 lLPHr~PmllVDrI~~~~~--g~----~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~----~ 162 (227)
-|||| ||+|||||+++++ |. +++++|+|+.|+|||+||||++|+|||+|++|+|||+++++++..... .
T Consensus 2 ~lP~r-p~lliDrV~~~~~~~G~~~~g~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~ 80 (150)
T cd01287 2 RLPGG-QLLMLDRVTEIDPGGGTFGLGYLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDN 80 (150)
T ss_pred CCCCC-cEEEEEEEEEEecCCCcccccEEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCc
Confidence 37999 9999999999997 43 799999999999999999999999999999999999999987654321 2
Q ss_pred CcceEEEeeEEEEEEccCccCCC-EEEEEEEEEEEec--cccEEEEEEEEEECCEEEEEEEEE
Q 027147 163 SRENFFFAGIDKVRFRKPVIAGD-TLVMRMTLVKLQK--RFGIAKMEGKAYVGGEVVCEGEFL 222 (227)
Q Consensus 163 ~~~~g~L~gi~kvkF~~pV~PGD-~L~i~v~i~~~~~--~~g~~~~~~~~~v~G~vVa~g~l~ 222 (227)
....+++.+++++||+++|.||| +|++++++++.+. ..+++++++.+++||++|++++..
T Consensus 81 ~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~~~~~vdg~~v~~a~~~ 143 (150)
T cd01287 81 PRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIADASLWVDGLRIYEAKDI 143 (150)
T ss_pred ccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCccEEEEEEEEEECCEEEEEEEcc
Confidence 24578999999999999999999 8999999998742 458999999999999999998754
No 5
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=100.00 E-value=6.2e-34 Score=228.13 Aligned_cols=127 Identities=53% Similarity=0.898 Sum_probs=101.9
Q ss_pred CCCCCCeeeeeEEEEEc-CCcE----EEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhccccc---CC-Cc
Q 027147 94 LPHRFPFLLVDRVIEYN-PGVS----AVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEV---GG-SR 164 (227)
Q Consensus 94 LPHr~PmllVDrI~~~~-~g~~----~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~---~~-~~ 164 (227)
||||+||+|||||++++ +|++ +++.++|+.|+|||+||||++|+|||++++|+|+|++++++++... .+ ..
T Consensus 1 lPhr~p~llvD~v~~v~~~g~~~~g~~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~ 80 (138)
T PF07977_consen 1 LPHRYPFLLVDRVLEVDPPGGSHGGRIVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEAR 80 (138)
T ss_dssp S--CTTS---SEEEEEETTTTETTEEEEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred CcCCCceEEEEEEEEEEcCCCeEEEEEEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcc
Confidence 79999999999999999 8888 9999999999999999999999999999999999999998875421 11 11
Q ss_pred ceEEEeeEEEEEEccCccCCC-EEEEEEEEEE-EeccccEEEEEEEEEECCEEEEEEE
Q 027147 165 ENFFFAGIDKVRFRKPVIAGD-TLVMRMTLVK-LQKRFGIAKMEGKAYVGGEVVCEGE 220 (227)
Q Consensus 165 ~~g~L~gi~kvkF~~pV~PGD-~L~i~v~i~~-~~~~~g~~~~~~~~~v~G~vVa~g~ 220 (227)
..+++.+++++||+++|.||| +|++++++.+ .+...+++.+++++++||+.|++++
T Consensus 81 ~~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~~~vdg~~v~~~~ 138 (138)
T PF07977_consen 81 KVPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGTAYVDGELVAEAE 138 (138)
T ss_dssp EEEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEE
T ss_pred eEEEeccccEEEECccEeCCCcEEEEEEEEEEeecccCCEEEEEEEEEECCEEEEEEC
Confidence 578999999999999999999 9999999997 2345689999999999999999985
No 6
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=100.00 E-value=4.9e-33 Score=218.42 Aligned_cols=130 Identities=58% Similarity=1.009 Sum_probs=117.1
Q ss_pred CCCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEE
Q 027147 94 LPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGID 173 (227)
Q Consensus 94 LPHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~ 173 (227)
||||+||+|||+|+++++++++++.++|+.|++||+||||++|++||++++|+|+|+++++.+..........+++.+++
T Consensus 1 lphr~p~l~vd~i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~ 80 (131)
T cd01288 1 LPHRYPFLLVDRVLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGID 80 (131)
T ss_pred CCCCCCeeEEEEEEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeec
Confidence 79999999999999999888999999999999999999999999999999999999999886543211234578999999
Q ss_pred EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEe
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMAT 225 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i 225 (227)
++||++||+|||+|++++++.+. ..+.+.++++++++|+++++|+++++.
T Consensus 81 ~~kf~~pv~pgd~l~i~~~v~~~--~~~~~~~~~~~~~~g~~v~~~~~~~~~ 130 (131)
T cd01288 81 KARFRKPVVPGDQLILEVELLKL--RRGIGKFKGKAYVDGKLVAEAELMFAI 130 (131)
T ss_pred ccEEccccCCCCEEEEEEEEEEe--eCCEEEEEEEEEECCEEEEEEEEEEEE
Confidence 99999999999999999999974 357899999999999999999999985
No 7
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=100.00 E-value=2e-32 Score=214.35 Aligned_cols=128 Identities=49% Similarity=0.859 Sum_probs=115.8
Q ss_pred CCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhccccc--CCCcceEEEeeE
Q 027147 95 PHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEV--GGSRENFFFAGI 172 (227)
Q Consensus 95 PHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~--~~~~~~g~L~gi 172 (227)
|||+||+|||+|+++++++++++.++|+.|++||+||||++|++||++++|+|||+++++++.... +.....+++.++
T Consensus 1 phr~p~~lvD~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (131)
T cd00493 1 PHRYPMLLVDRVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGV 80 (131)
T ss_pred CCCCCeeEEEEEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEc
Confidence 899999999999999998899999999999999999999999999999999999999999875432 134567999999
Q ss_pred EEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEE
Q 027147 173 DKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 224 (227)
Q Consensus 173 ~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~ 224 (227)
+++||++||+|||+|++++++.+.+ .+++.++++++++|++++++++.+.
T Consensus 81 ~~~kf~~~v~pgd~l~i~~~i~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~ 130 (131)
T cd00493 81 RKVKFRGPVLPGDTLTLEVELLKVR--RGLGKFDGRAYVDGKLVAEAELMAA 130 (131)
T ss_pred ceeEECCCcCCCCEEEEEEEEEEee--CCEEEEEEEEEECCEEEEEEEEEEE
Confidence 9999999999999999999999753 3799999999999999999996553
No 8
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=100.00 E-value=2.4e-32 Score=220.13 Aligned_cols=133 Identities=22% Similarity=0.205 Sum_probs=116.4
Q ss_pred HHHHhCCCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccc--cCCCcce
Q 027147 89 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE--VGGSREN 166 (227)
Q Consensus 89 ~I~~lLPHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~--~~~~~~~ 166 (227)
+|.++||||+||+|||+|++++++ ++++.++|+.|++||.+|+ |++||++++|+|||+++++.+... .....+.
T Consensus 2 ~I~~llPHr~PmllvD~v~~~~~~-~~~~~~~v~~~~~f~~~~~---~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~ 77 (138)
T cd01289 2 WIAALIPHDGPMCLLDRVISWDDD-SIHCRATVHPDPLFPLRAH---GRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRP 77 (138)
T ss_pred chHHhCCCCCCeEEEEEEEEEcCC-EEEEEEEeCCCCcCccccC---CCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 589999999999999999999975 7999999999999998654 789999999999999999875321 1235578
Q ss_pred EEEeeEEEEEEccCccC-CCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEec
Q 027147 167 FFFAGIDKVRFRKPVIA-GDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMATG 226 (227)
Q Consensus 167 g~L~gi~kvkF~~pV~P-GD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i~ 226 (227)
|||++++++||++++.| ||+|++++++.... .++++.++|+++++|+++|+|++++++-
T Consensus 78 g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~-~~~~~~~~~~~~v~~~~va~a~l~~~~p 137 (138)
T cd01289 78 GFLLGSRKYEAHVDRFDLGSTLLIVVAELLQG-DSGLGVFECTIEDQGGVLASGRLNVYQP 137 (138)
T ss_pred EEEEEEEEEEEEcceeCCCCeeEEEeeeeeeC-CCcEEEEEEEEEECCEEEEEEEEEEEcC
Confidence 99999999999999988 99999999988642 2489999999999999999999999863
No 9
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=100.00 E-value=6.9e-32 Score=254.35 Aligned_cols=147 Identities=48% Similarity=0.866 Sum_probs=129.8
Q ss_pred CCCCCCCCCHHHHHHhCCCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcc
Q 027147 78 YQAFPTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 157 (227)
Q Consensus 78 ~~~~~~~l~~~~I~~lLPHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~ 157 (227)
-+.-++.|+.++|.++||||+||+|||+|++++ ++++++.++|+.|++||+||||++|++|||+++|+|||+++++...
T Consensus 314 ~~~~~~~m~~~~I~~lLPHR~PmLLVDrIl~~e-~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~ 392 (464)
T PRK13188 314 DPNKEPILDINRIMKILPHRYPFLLVDKIIELG-DTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLN 392 (464)
T ss_pred CCCCCCccCHHHHHHhCCCCCCeEEEEEEeEEe-CCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhh
Confidence 344477799999999999999999999999999 6799999999999999999999999999999999999999987642
Q ss_pred cccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEec
Q 027147 158 PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMATG 226 (227)
Q Consensus 158 ~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i~ 226 (227)
.........+++.+++++||++||+|||+|++++++.+.. +.+++.++++++++|++||+|++++++.
T Consensus 393 ~~~~~~g~lg~LlgI~kvKF~~PV~PGDtL~I~veI~~~~-~~giv~f~g~~~vdGelVaeael~~~v~ 460 (464)
T PRK13188 393 TVPDPENYSTYFMKIDKVKFRQKVVPGDTLIFKVELLSPI-RRGICQMQGKAYVNGKLVCEAELMAQIV 460 (464)
T ss_pred ccCCCCCceEEEEeccEEEEcCCCCCCCEEEEEEEEEEEe-cCCEEEEEEEEEECCEEEEEEEEEEEEe
Confidence 2111233578999999999999999999999999988643 3689999999999999999999999874
No 10
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=99.98 E-value=3.7e-31 Score=220.52 Aligned_cols=122 Identities=25% Similarity=0.415 Sum_probs=108.8
Q ss_pred CCCCCCeeeeeEEEEEcC--Cc----EEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceE
Q 027147 94 LPHRFPFLLVDRVIEYNP--GV----SAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENF 167 (227)
Q Consensus 94 LPHr~PmllVDrI~~~~~--g~----~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g 167 (227)
|| ++||+|||+|+++++ |+ +++++|+|+.|+|||+||||++|+||||++||+|||++++++++... ...+
T Consensus 26 lp-~~PmllID~V~~~~~~gG~~~~g~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~---~~~g 101 (169)
T TIGR01749 26 LP-APPMLMIDRIVEISETGGKFGKGYVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGG---PGRG 101 (169)
T ss_pred CC-CCCeEEEEEEEEEecCCCcccccEEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhcccc---CCce
Confidence 89 999999999999998 54 79999999999999999999999999999999999999999875432 2247
Q ss_pred EEeeEEEEEEccCccCCCEE-EEEEEEEEEe-ccccEEEEEEEEEECCEEEEEE
Q 027147 168 FFAGIDKVRFRKPVIAGDTL-VMRMTLVKLQ-KRFGIAKMEGKAYVGGEVVCEG 219 (227)
Q Consensus 168 ~L~gi~kvkF~~pV~PGD~L-~i~v~i~~~~-~~~g~~~~~~~~~v~G~vVa~g 219 (227)
++.+++++||+++|.|||++ ++++++.+.. ...+++.++|+++++|+++|++
T Consensus 102 ~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~~~~~~~~i~v~g~~va~a 155 (169)
T TIGR01749 102 RALGVGEVKFTGQVLPTAKKVTYRIHFKRVINRRLVMGIADGEVLVDGRLIYTA 155 (169)
T ss_pred EEeeccEEEEccCEecCCeEEEEEEEEEEEeecCCcEEEEEEEEEECCEEEEEE
Confidence 99999999999999999996 8999888752 3467999999999999999994
No 11
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=99.97 E-value=2.6e-30 Score=216.01 Aligned_cols=126 Identities=24% Similarity=0.358 Sum_probs=111.6
Q ss_pred HhCCCCCCeeeeeEEEEEcCCc------EEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcc
Q 027147 92 DILPHRFPFLLVDRVIEYNPGV------SAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRE 165 (227)
Q Consensus 92 ~lLPHr~PmllVDrI~~~~~g~------~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~ 165 (227)
..|| ++||+|||||+++++++ +++|+|+|+.|+|||+||||++|+||||++||+|||++++++++.... .
T Consensus 27 ~~lp-~~PmllIDrV~~~~~~gg~~~~g~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~---~ 102 (172)
T PRK05174 27 AQLP-APPMLMMDRITEISETGGEFGKGYIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGP---G 102 (172)
T ss_pred cCCC-CCCeEEEEEEEEEcCCCCcccceEEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhccccc---C
Confidence 4589 89999999999999864 799999999999999999999999999999999999999998644321 2
Q ss_pred eEEEeeEEEEEEccCccCCCE-EEEEEEEEEEe-ccccEEEEEEEEEECCEEEEEEEE
Q 027147 166 NFFFAGIDKVRFRKPVIAGDT-LVMRMTLVKLQ-KRFGIAKMEGKAYVGGEVVCEGEF 221 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~PGD~-L~i~v~i~~~~-~~~g~~~~~~~~~v~G~vVa~g~l 221 (227)
.+++.+++++||+++|.|||+ +++++++.+.. +..+++.++|++++||+++|+++.
T Consensus 103 ~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~~~~~~~~~~~i~v~g~~va~a~~ 160 (172)
T PRK05174 103 KGRALGVGEVKFTGQVLPTAKKVTYEIDIKRVINRKLVMGIADGRVLVDGEEIYTAKD 160 (172)
T ss_pred ceEEeeccEEEECccCcCCCEEEEEEEEEEEEecCCCCEEEEEEEEEECCEEEEEEEe
Confidence 478999999999999999998 89999998753 346899999999999999999943
No 12
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.70 E-value=9.7e-16 Score=129.40 Aligned_cols=110 Identities=28% Similarity=0.460 Sum_probs=92.8
Q ss_pred eeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccC
Q 027147 101 LLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKP 180 (227)
Q Consensus 101 llVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~p 180 (227)
-+||+|+++++|+++++.++|+.|+ +|+ +++++||.+ ++||++++++... .+..++.++.+++|++|
T Consensus 72 ~~vD~i~eie~g~~a~~~k~Vt~ne-~fn----~~~i~hG~f---~~aqa~~la~~~~-----~~~~~~~~i~~irF~kP 138 (185)
T PRK04424 72 EVVGELIDLELGRSAISILEITEEM-VFS----KTGIARGHH---LFAQANSLAVAVI-----DAELALTGVANIRFKRP 138 (185)
T ss_pred cceeeEEEecCCcEEEEEEecChhh-ccC----CCCeecHHH---HHHHHHHHHHHhc-----CCcEEEEEeeeEEEccC
Confidence 5899999999998999999999998 445 357788877 6999988654321 13568899999999999
Q ss_pred ccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEe
Q 027147 181 VIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMAT 225 (227)
Q Consensus 181 V~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i 225 (227)
|+|||+|.+++++.+. ..+++.+++++++||++|++|+++++.
T Consensus 139 V~pGD~L~~ea~v~~~--~~~~~~v~~~~~v~g~~V~ege~~~~~ 181 (185)
T PRK04424 139 VKLGERVVAKAEVVRK--KGNKYIVEVKSYVGDELVFRGKFIMYR 181 (185)
T ss_pred CCCCCEEEEEEEEEEc--cCCEEEEEEEEEECCEEEEEEEEEEEE
Confidence 9999999999999974 345779999999999999999999865
No 13
>COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase [Lipid metabolism]
Probab=99.69 E-value=5.3e-17 Score=130.87 Aligned_cols=122 Identities=26% Similarity=0.325 Sum_probs=99.1
Q ss_pred HHHhCCCCCCeeeeeEEEEEcCCcEEEEEEEeCCC-CCccCCCCCCCCccChhHHHHHHHHHHHHHhccccc-CCC--cc
Q 027147 90 IRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTIN-DNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEV-GGS--RE 165 (227)
Q Consensus 90 I~~lLPHr~PmllVDrI~~~~~g~~~~a~k~Vt~n-e~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~-~~~--~~ 165 (227)
|..+|||+.||+|+|+|..|++ ++++|..+|+++ .+|..-| --+|+|+.||+|||+.+++.++... .+. .+
T Consensus 12 iaa~LPHsg~MlLLd~VvtwdD-d~~rc~atvsp~~a~~l~~d----g~Lpa~~gIElmAQAv~vh~g~l~~rq~~ps~r 86 (161)
T COG4706 12 IAAYLPHSGPMLLLDDVVTWDD-DSARCRATVSPSGAPFLDPD----GNLPAWFGIELMAQAVGVHSGWLRHRQGKPSIR 86 (161)
T ss_pred HHHhCCCCCceEeeeeeeeecC-CeEEEEeEeCCCCCCccCcC----CCcchhhhHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 9999999999999999999986 589999999998 6666533 2489999999999999999875432 232 37
Q ss_pred eEEEeeEEEEEEccCcc-CCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEE
Q 027147 166 NFFFAGIDKVRFRKPVI-AGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVC 217 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~-PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa 217 (227)
.|||+|.|+++.+.+.. +|+.|.+.++.. +++.+|...|+|++..+|+...
T Consensus 87 ~GfLlg~Rkleaha~~l~~~q~ll~t~~e~-iqddgg~g~f~csir~d~~~~~ 138 (161)
T COG4706 87 LGFLLGARKLEAHAGILPAGQTLLITVKEL-IQDDGGFGSFECSIRNDGEATG 138 (161)
T ss_pred ceeeeeeeeeeeeccccCCccchHHHHHHH-hccCCCceEEEEEEccCchhhc
Confidence 99999999999777665 599988877655 3567789999999997766554
No 14
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=99.10 E-value=5.7e-10 Score=89.11 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=73.7
Q ss_pred eCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEec--
Q 027147 121 VTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK-- 198 (227)
Q Consensus 121 Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~-- 198 (227)
+..|+.|.+++..+.+|+||++++-.+. +++.- ...+ ..+...++++++|++||+|||+|++++++.+++.
T Consensus 39 iH~D~~~a~~~~~~~~ia~G~l~~~~~~---~~~~~--~~~~--~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~ 111 (146)
T cd03451 39 LHFDAAYAAKTEFGRRLVNSLFTLSLAL---GLSVN--DTSL--TAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESK 111 (146)
T ss_pred cccCHHHHhhCCCCCccccHHhHHHHHh---hheeh--hccc--cceeccCccEEEecCCCCCCCEEEEEEEEEEEecCC
Confidence 3446677788888899999998874322 21111 1111 2445677889999999999999999999998653
Q ss_pred ---cccEEEEEEEEE-ECCEEEEEEEEEEEec
Q 027147 199 ---RFGIAKMEGKAY-VGGEVVCEGEFLMATG 226 (227)
Q Consensus 199 ---~~g~~~~~~~~~-v~G~vVa~g~l~l~i~ 226 (227)
..+++.++++++ ++|++|++|+.++++.
T Consensus 112 ~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~ 143 (146)
T cd03451 112 SRPDAGIVTVRTVGYNQDGEPVLSFERTALVP 143 (146)
T ss_pred CCCCCeEEEEEEEEECCCCCEEEEEEehhEEE
Confidence 246899999997 5899999999998874
No 15
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.83 E-value=4.6e-08 Score=77.52 Aligned_cols=87 Identities=29% Similarity=0.394 Sum_probs=63.8
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEec----cccEEEEEEEE
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK----RFGIAKMEGKA 209 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~----~~g~~~~~~~~ 209 (227)
+.+++||.++ ++++.+++..... .....+...++++++|++||++||+|++++++.+.+. ..+++.++.++
T Consensus 49 ~~~ia~G~~~---~a~~~~~~~~~~~--~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~ 123 (140)
T cd03446 49 GERIAHGLLT---LSIATGLLQRLGV--FERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEV 123 (140)
T ss_pred CCceeccccH---HHHHhhHhhhccc--ccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEE
Confidence 5689999887 4555554432111 1123445678899999999999999999999987642 24678888887
Q ss_pred EE-CCEEEEEEEEEEEe
Q 027147 210 YV-GGEVVCEGEFLMAT 225 (227)
Q Consensus 210 ~v-~G~vVa~g~l~l~i 225 (227)
++ +|++|++|+.++++
T Consensus 124 ~nq~g~~v~~~~~~~l~ 140 (140)
T cd03446 124 VNQRGEVVQSGEMSLLV 140 (140)
T ss_pred EcCCCCEEEEEEEeeeC
Confidence 75 89999999988764
No 16
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.72 E-value=3.3e-07 Score=70.93 Aligned_cols=84 Identities=26% Similarity=0.302 Sum_probs=61.5
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-C
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-G 212 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~ 212 (227)
+.+++||.++.-.+..+.+- +. .+ .+.+.+-.+++|++||++||+|++++++.+.....+++.+++++++ +
T Consensus 44 ~~~i~~g~~~~~~~~~~~~~---~~--~g---~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~~ 115 (128)
T cd03449 44 GGRIAHGMLTASLISAVLGT---LL--PG---PGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQN 115 (128)
T ss_pred CCceecHHHHHHHHHHHHhc---cC--CC---ceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeCC
Confidence 46899998877554332211 11 11 2233344699999999999999999999987555578889999887 4
Q ss_pred CEEEEEEEEEEEe
Q 027147 213 GEVVCEGEFLMAT 225 (227)
Q Consensus 213 G~vVa~g~l~l~i 225 (227)
|++|++|+.++++
T Consensus 116 g~~v~~g~~~~~~ 128 (128)
T cd03449 116 GEVVIEGEAVVLA 128 (128)
T ss_pred CCEEEEEEEEEeC
Confidence 9999999998863
No 17
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=98.52 E-value=1.1e-06 Score=70.63 Aligned_cols=86 Identities=22% Similarity=0.425 Sum_probs=60.0
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEec----cccEEEEEEEE
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK----RFGIAKMEGKA 209 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~----~~g~~~~~~~~ 209 (227)
+.+|.||.+..-. +.+++..+ .........+.++++|++||++||+|++++++..+.. +.+++.++.++
T Consensus 49 g~~ia~G~l~~s~---~~~l~~~~----~~~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~ 121 (142)
T cd03452 49 GKRVAHGYFVLSA---AAGLFVDP----APGPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEV 121 (142)
T ss_pred CCeeecHHHHHHH---HhhhCccC----CcccEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEE
Confidence 4688999776433 22322211 1112223346789999999999999999999998642 22577888887
Q ss_pred EE-CCEEEEEEEEEEEec
Q 027147 210 YV-GGEVVCEGEFLMATG 226 (227)
Q Consensus 210 ~v-~G~vVa~g~l~l~i~ 226 (227)
.+ +|++|++++.++++.
T Consensus 122 ~nq~g~~V~~~~~~~~~~ 139 (142)
T cd03452 122 TNQNGELVASYDILTLVA 139 (142)
T ss_pred EecCCCEEEEEEehHeeE
Confidence 76 799999999988764
No 18
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.45 E-value=2.4e-06 Score=67.86 Aligned_cols=87 Identities=22% Similarity=0.254 Sum_probs=60.0
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEec-----cccEEEEEEE
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK-----RFGIAKMEGK 208 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~-----~~g~~~~~~~ 208 (227)
+.+|.||.+..-.+. +++. ... .+....+...+..+++|++||++||+|++++++.++.. ..+++.++.+
T Consensus 47 ~~~ia~g~~~~~~~~---~~~~-~~~-~~~~~~~~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~ 121 (140)
T cd03454 47 GGLAASGWHTAAITM---RLLV-DAG-LSGSASGGSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSE 121 (140)
T ss_pred CCeeechHHHHHHHH---Hhhh-hhc-cccceEEEEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEE
Confidence 468899966544332 2221 000 01101234556789999999999999999999997653 3468888888
Q ss_pred EEE-CCEEEEEEEEEEEe
Q 027147 209 AYV-GGEVVCEGEFLMAT 225 (227)
Q Consensus 209 ~~v-~G~vVa~g~l~l~i 225 (227)
+++ +|++|++++.++++
T Consensus 122 ~~nq~g~~v~~~~~~~~~ 139 (140)
T cd03454 122 TLNQRGEVVLTFEATVLV 139 (140)
T ss_pred EEcCCCCEEEEEEehhee
Confidence 876 79999999988775
No 19
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=98.41 E-value=4.4e-06 Score=64.28 Aligned_cols=83 Identities=28% Similarity=0.352 Sum_probs=60.2
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEecc--ccEEEEEEEEEE
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKR--FGIAKMEGKAYV 211 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~--~g~~~~~~~~~v 211 (227)
+.+++||.+++-.+.....-+.. + ..+...+..+++|++||++||+|+++.++...+.. .+++.++.++++
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n 113 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWLP-----G--TDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARN 113 (127)
T ss_pred CCceechHHHHHHHHhhhhhhcc-----C--cccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEe
Confidence 56999998887655443322221 1 12345566799999999999999999999986432 367888888887
Q ss_pred -CCEEEEEEEEEE
Q 027147 212 -GGEVVCEGEFLM 223 (227)
Q Consensus 212 -~G~vVa~g~l~l 223 (227)
+|+++++|+..+
T Consensus 114 ~~g~~v~~g~~~~ 126 (127)
T cd03441 114 QGGEVVLSGEATV 126 (127)
T ss_pred CCCCEEEEEEEEe
Confidence 488888888765
No 20
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=98.39 E-value=7.2e-06 Score=65.03 Aligned_cols=82 Identities=20% Similarity=0.164 Sum_probs=58.3
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-C
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-G 212 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~ 212 (227)
+.+|.||.+.+-.+..+.+.+... + ....+.+ .+++|++||++||+|++++++.++. .+...++.++++ +
T Consensus 41 ~~~iahG~l~~~~~~~~~~~~~~~----~--~~~~~~~-~~~rf~~PV~~gdtl~~~~~v~~~~--~~~~~~~~~~~nq~ 111 (126)
T cd03447 41 PGTITHGMYTSAAVRALVETWAAD----N--DRSRVRS-FTASFVGMVLPNDELEVRLEHVGMV--DGRKVIKVEARNEE 111 (126)
T ss_pred CCCeechhHHHHHHHHHHHHhccC----C--CcceEEE-EEEEEcccCcCCCEEEEEEEEEEEe--CCeEEEEEEEEECC
Confidence 469999988777665544332211 1 1223334 4899999999999999999999763 356677777777 4
Q ss_pred -CEEEEEEEEEEE
Q 027147 213 -GEVVCEGEFLMA 224 (227)
Q Consensus 213 -G~vVa~g~l~l~ 224 (227)
|++|++|+.++.
T Consensus 112 ~g~~V~~g~~~v~ 124 (126)
T cd03447 112 TGELVLRGEAEVE 124 (126)
T ss_pred CCCEEEEEEEEEe
Confidence 789999998764
No 21
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=98.38 E-value=3.8e-06 Score=65.57 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=58.6
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEE
Q 027147 131 HFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 210 (227)
Q Consensus 131 HFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~ 210 (227)
.|+ .+|.||.+..-.+.....-+++ . ...+.+ .+++|++||++||+|++++++..++... ++.++.++.
T Consensus 40 g~~-~~ia~G~~~~~~~~~~~~~~~~------~--~~~~~~-~~~rf~~pv~~Gdtl~~~~~v~~~~~~~-~v~~~~~~~ 108 (123)
T cd03455 40 GYP-DLYVNGPTLAGLVIRYVTDWAG------P--DARVKS-FAFRLGAPLYAGDTLRFGGRVTAKRDDE-VVTVELWAR 108 (123)
T ss_pred CCC-ceEEEHHHHHHHHHHHHHHccC------C--cceEEE-EEEEeeccccCCCEEEEEEEEEeeccCc-EEEEEEEEE
Confidence 354 5899998877555443322221 0 122333 3899999999999999999999764433 778888887
Q ss_pred E-CCEEEEEEEEEEE
Q 027147 211 V-GGEVVCEGEFLMA 224 (227)
Q Consensus 211 v-~G~vVa~g~l~l~ 224 (227)
+ +|++|++|+.+++
T Consensus 109 nq~G~~v~~g~a~v~ 123 (123)
T cd03455 109 NSEGDHVMAGTATVA 123 (123)
T ss_pred cCCCCEEEeEEEEEC
Confidence 6 7899999998763
No 22
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.35 E-value=7.6e-06 Score=64.30 Aligned_cols=82 Identities=21% Similarity=0.153 Sum_probs=57.9
Q ss_pred CCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEecc--ccEEEEEEEE
Q 027147 132 FPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKR--FGIAKMEGKA 209 (227)
Q Consensus 132 Fp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~--~g~~~~~~~~ 209 (227)
|+ .+++||.+..-.+..+..-++. + .+.+... +++|++||++||+|++++++..++.. .+++.++.++
T Consensus 42 ~~-~~i~~G~~~~~~~~~~~~~~~~-----~---~~~i~~~-~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~ 111 (127)
T cd03453 42 LP-GVIAHGMLTMGLLGRLVTDWVG-----D---PGRVVSF-GVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDA 111 (127)
T ss_pred CC-CcEecHHHHHHHHHHHHHHHcC-----C---ccceEEE-EEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEE
Confidence 44 5899998877555443332221 1 1123333 58999999999999999999876432 3678888888
Q ss_pred EE-CCEEEEEEEEEE
Q 027147 210 YV-GGEVVCEGEFLM 223 (227)
Q Consensus 210 ~v-~G~vVa~g~l~l 223 (227)
.+ +|++|++|+..+
T Consensus 112 ~nq~g~~v~~g~a~v 126 (127)
T cd03453 112 TDQAGGKKVLGRAIV 126 (127)
T ss_pred EEcCCCEEEEEEEEE
Confidence 76 788999999876
No 23
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=98.31 E-value=1.1e-05 Score=66.67 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=46.2
Q ss_pred EEEEEccCccCCCEEEEEEEEEEEec--cccEEEEEEEEEE-CCEEEEEEEEEEEec
Q 027147 173 DKVRFRKPVIAGDTLVMRMTLVKLQK--RFGIAKMEGKAYV-GGEVVCEGEFLMATG 226 (227)
Q Consensus 173 ~kvkF~~pV~PGD~L~i~v~i~~~~~--~~g~~~~~~~~~v-~G~vVa~g~l~l~i~ 226 (227)
.+++|.+||++||+|++++++...+. ..+++.++.++++ +|++|++++.++++-
T Consensus 89 q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq~Ge~V~~~~~~~~~r 145 (159)
T PRK13692 89 QVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDVVQETYTTLAGR 145 (159)
T ss_pred eEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcCCCCEEEEEEEEEEEe
Confidence 78999999999999999999986543 3478999999886 899999999988763
No 24
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=98.29 E-value=1.2e-05 Score=66.85 Aligned_cols=54 Identities=30% Similarity=0.397 Sum_probs=45.5
Q ss_pred EEEEEEccCccCCCEEEEEEEEEEEecc--ccEEEEEEEEEE-CCEEEEEEEEEEEe
Q 027147 172 IDKVRFRKPVIAGDTLVMRMTLVKLQKR--FGIAKMEGKAYV-GGEVVCEGEFLMAT 225 (227)
Q Consensus 172 i~kvkF~~pV~PGD~L~i~v~i~~~~~~--~g~~~~~~~~~v-~G~vVa~g~l~l~i 225 (227)
-.+++|++||++||+|++++++..++++ .+++.++.++.+ +|++|++++.++++
T Consensus 88 ~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ~Ge~V~~~~~~~~~ 144 (166)
T PRK13691 88 DQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTNDDGELVMEAYTTLMG 144 (166)
T ss_pred eeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 3789999999999999999999876443 368888888875 79999999988865
No 25
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=98.24 E-value=1.9e-05 Score=64.55 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=59.7
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEecccc---EEEEEEEEE
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFG---IAKMEGKAY 210 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g---~~~~~~~~~ 210 (227)
+.+|.||.+..-.+..+.+-+.. ......+...+.++++|++||++||+|++++++.+++.+.+ .++.+++++
T Consensus 55 g~~Ia~G~~t~sl~~~l~~~~~~----~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~ 130 (149)
T cd03450 55 GGTIAHGFLTLSLLPALTPQLFR----VEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVE 130 (149)
T ss_pred CCeEECHHHHHHHHHHHHHhccc----CCCceEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEE
Confidence 46899998876544333221111 01112234456789999999999999999999998765444 677777777
Q ss_pred EC--CEEEEEEEEEEEe
Q 027147 211 VG--GEVVCEGEFLMAT 225 (227)
Q Consensus 211 v~--G~vVa~g~l~l~i 225 (227)
+. ++.+|.+++.++.
T Consensus 131 ~~~~~~p~~~~~~~~~~ 147 (149)
T cd03450 131 IEGEDKPACVAEWISRL 147 (149)
T ss_pred EeCCCCceEEEEEEEee
Confidence 74 4678888887764
No 26
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.22 E-value=6.6e-05 Score=51.27 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=64.5
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEEC-
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVG- 212 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~- 212 (227)
.+++++|..+++.+.++...++..... ....+...+++ ++|++|+.+||.|.+++++.... .....++..+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~g~~v~~~~~~~~~~--~~~~~~~~~~~~~~ 88 (100)
T cd03440 14 GGGIVHGGLLLALADEAAGAAAARLGG--RGLGAVTLSLD-VRFLRPVRPGDTLTVEAEVVRVG--RSSVTVEVEVRNED 88 (100)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHhcc--CCCeEEEEEEE-eEEecCCCCCCEEEEEEEEEecc--ccEEEEEEEEECCC
Confidence 356789999999999998877643221 12344566665 99999999999999999998753 3467788888886
Q ss_pred CEEEEEEEEEE
Q 027147 213 GEVVCEGEFLM 223 (227)
Q Consensus 213 G~vVa~g~l~l 223 (227)
|++++.++.++
T Consensus 89 ~~~~~~~~~~~ 99 (100)
T cd03440 89 GKLVATATATF 99 (100)
T ss_pred CCEEEEEEEEe
Confidence 99999987764
No 27
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=98.16 E-value=3.4e-05 Score=63.51 Aligned_cols=88 Identities=26% Similarity=0.283 Sum_probs=62.4
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccc--cEEEEEEE
Q 027147 131 HFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRF--GIAKMEGK 208 (227)
Q Consensus 131 HFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~--g~~~~~~~ 208 (227)
.|++ +|.+|++-+-.+..+...... ....+.-.+.+++||.+||++||+|+.++++..++... |++..+.+
T Consensus 64 ~fg~-~iahG~~t~a~~~~~~~~~~~------~~~~~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~ 136 (159)
T COG2030 64 GFGG-PIAHGMLTLALAMGLVVAALG------DPSVGANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLE 136 (159)
T ss_pred CCCC-EehhHHHHHHHHHHHHHHhcc------CcceeeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEE
Confidence 5654 688887765543322221111 11145677889999999999999999999999876544 88888888
Q ss_pred EEE-CCEEEEEEEEEEEe
Q 027147 209 AYV-GGEVVCEGEFLMAT 225 (227)
Q Consensus 209 ~~v-~G~vVa~g~l~l~i 225 (227)
.++ +|+.+...+...++
T Consensus 137 ~~~~~g~~v~~~~~~~~~ 154 (159)
T COG2030 137 TVNQEGELVLTLEATVLV 154 (159)
T ss_pred EEccCCcEEEEEEEeEeE
Confidence 776 78888877776655
No 28
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=98.15 E-value=2.5e-05 Score=74.74 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=61.3
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-C
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-G 212 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~ 212 (227)
+.+|.||.++.-.+. +++..+. .+ .+.+.+-.+++|++||++||+|++++++..++...+++.+++++++ +
T Consensus 57 g~~IahG~l~~s~~~---~l~~~~~--~g---~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq~ 128 (466)
T PRK08190 57 HHVVAHGMWGGALIS---AVLGTRL--PG---PGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQD 128 (466)
T ss_pred CCceeCHHHHHHHHH---HHHhhhC--CC---cceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEeCC
Confidence 468999988654432 2222111 11 1223344799999999999999999999987666778888888765 7
Q ss_pred CEEEEEEEEEEEec
Q 027147 213 GEVVCEGEFLMATG 226 (227)
Q Consensus 213 G~vVa~g~l~l~i~ 226 (227)
|++|++|+.++++.
T Consensus 129 G~~V~~g~~~~l~~ 142 (466)
T PRK08190 129 GEVVITGTAEVIAP 142 (466)
T ss_pred CCEEEEEEEEeecc
Confidence 99999999988763
No 29
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=98.09 E-value=0.00048 Score=54.50 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=73.8
Q ss_pred EEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEE
Q 027147 114 SAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTL 193 (227)
Q Consensus 114 ~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i 193 (227)
...+...++.+++||..| +++ -.||.+++|++=|++-+...............+.+ -+++|..++...-.+.+++++
T Consensus 21 ~~~~~~~~p~~h~~~~dh-~~d-h~~gmll~Ea~RQa~~~~~h~~~~vp~~~~~~~~~-l~~~f~~~~e~~~P~~~~~~~ 97 (132)
T PF03756_consen 21 RFRARLQWPRSHPFFFDH-PGD-HVPGMLLLEAARQAGIALAHRFYGVPLDHQFVLTS-LDFTFSRFAELDVPADLTVRI 97 (132)
T ss_pred EEEEEEEcCCCCccccCC-CCC-ccChHHHHHHHHHHHHHhhccccCCCCCceEEEEE-EEEEEccccccCCCEEEEEEE
Confidence 456666799999999888 443 46999999999999877653221111112233444 478898988666677776666
Q ss_pred EEEe---ccccEEEEEEEEEECCEEEEEEEEEEE
Q 027147 194 VKLQ---KRFGIAKMEGKAYVGGEVVCEGEFLMA 224 (227)
Q Consensus 194 ~~~~---~~~g~~~~~~~~~v~G~vVa~g~l~l~ 224 (227)
.... +...-..+.++++.+|++++++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~q~g~~~a~~~~~~t 131 (132)
T PF03756_consen 98 TCRDRRGGRPRGLRFRVTVSQGGRVVATASMTFT 131 (132)
T ss_pred EeccccCCccceEEEEEEEEECCEEEEEEEEEEE
Confidence 6421 222345788888999999999998864
No 30
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=98.07 E-value=0.00035 Score=53.74 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=69.1
Q ss_pred EEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCC
Q 027147 105 RVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAG 184 (227)
Q Consensus 105 rI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PG 184 (227)
+++++++| .+...-.+++++. -...+++|-++.-.+-.++++..... +. ... ...-+++|.+|+.+|
T Consensus 7 ~i~~~~~g-~~~~~l~~~~~~~------n~~g~~HGG~i~al~D~~~~~~~~~~---~~--~~~-t~~~~i~f~rp~~~G 73 (114)
T TIGR02286 7 DILELGPG-FARVAMTVRADML------NGHGTAHGGFLFSLADSAFAYACNSY---GD--AAV-AAQCTIDFLRPGRAG 73 (114)
T ss_pred EEEEecCC-EEEEEEECCHHHc------CcCCCchHHHHHHHHHHHHHHHhcCC---CC--ceE-EEEEEEEEecCCCCC
Confidence 56777776 4555544544322 22456777766655555544433221 11 122 333489999999999
Q ss_pred CEEEEEEEEEEEeccccEEEEEEEEE-ECCEEEEEEEEEEEe
Q 027147 185 DTLVMRMTLVKLQKRFGIAKMEGKAY-VGGEVVCEGEFLMAT 225 (227)
Q Consensus 185 D~L~i~v~i~~~~~~~g~~~~~~~~~-v~G~vVa~g~l~l~i 225 (227)
|+|++++++.+.. +....++++++ .+|+++|.++.++++
T Consensus 74 ~~l~~~a~v~~~g--~~~~~~~~~i~~~~~~~va~~~~t~~~ 113 (114)
T TIGR02286 74 ERLEAEAVEVSRG--GRTGTYDVEVVNQEGELVALFRGTSRR 113 (114)
T ss_pred CEEEEEEEEEEeC--CcEEEEEEEEEcCCCCEEEEEEEEEEE
Confidence 9999999999642 35667888888 478999999888875
No 31
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=97.96 E-value=0.0002 Score=62.83 Aligned_cols=110 Identities=19% Similarity=0.326 Sum_probs=72.8
Q ss_pred eEEEEEcCCcEEEEEEEeCCCC-CccCCC-CCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCc
Q 027147 104 DRVIEYNPGVSAVAIKNVTIND-NFFPGH-FPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPV 181 (227)
Q Consensus 104 DrI~~~~~g~~~~a~k~Vt~ne-~fF~GH-Fp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV 181 (227)
+++...++ ...+....++.++ +|+.+| +.|.+|+||+..+|++.+++..+... . ...+++++|.+|+
T Consensus 6 ~~~~~~~~-~~~~~~~~l~~~~~~~l~dH~v~g~~i~Pga~~le~~~~Aa~~~~~~--------~--~~~l~~~~~~~pl 74 (295)
T PF14765_consen 6 HRVPSSSP-GSVVFESRLSPDEHPFLRDHRVQGQPILPGAAYLEMALEAARQLSPS--------S--VVELRDLRFHRPL 74 (295)
T ss_dssp EEEEETTT-SEEEEEEEECTTTTGGGGGEEETTEEEE-HHHHHHHHHHHHHHHTCS--------S--EEEEEEEEE-S-E
T ss_pred cccccCCC-CeEEEEEEECCccCchhhcCEECCEeeehhHHHHHHHHHHHHHhhCc--------c--cceEEEeEecccE
Confidence 44444333 5778888888655 588999 55789999999999999987765531 1 5578999999999
Q ss_pred c--CCCEEEEEEEEEEEecccc--EEEEEEEEEEC--C--EEEEEEEEEEE
Q 027147 182 I--AGDTLVMRMTLVKLQKRFG--IAKMEGKAYVG--G--EVVCEGEFLMA 224 (227)
Q Consensus 182 ~--PGD~L~i~v~i~~~~~~~g--~~~~~~~~~v~--G--~vVa~g~l~l~ 224 (227)
. .++..++.+++.......+ .+.++...... + .+.++|++.+.
T Consensus 75 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~h~~g~v~~~ 125 (295)
T PF14765_consen 75 VLDEGEPRELRVELDPEEDGSGSMEWRFEIFSRNKDDSGWTLHASGQVSLD 125 (295)
T ss_dssp EE-TTTEEEEEEEEEEETTTTEEEEEEEEEEEEESTCCGEEEEEEEEEEEE
T ss_pred EecCCCcEEEEEEEEEccCCCCccceEEEEEEecCCCcceEEeeeeEEEee
Confidence 6 4778888887776422211 23444443332 2 67888888754
No 32
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=97.94 E-value=0.00032 Score=53.34 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=61.8
Q ss_pred CccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECC--
Q 027147 136 PIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGG-- 213 (227)
Q Consensus 136 PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G-- 213 (227)
.++.|-.+++++-+++..+..... . ...+...+.+++|++|+.+||.|.+++++.+. .+..+.++++++.++
T Consensus 23 g~v~~g~~~~~~d~a~~~~~~~~~--~--~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~--g~~~~~~~~~i~~~~~~ 96 (123)
T cd03442 23 GTIFGGWLLEWMDELAGIAAYRHA--G--GRVVTASVDRIDFLKPVRVGDVVELSARVVYT--GRTSMEVGVEVEAEDPL 96 (123)
T ss_pred CcEeHHHHHHHHHHHHHHHHHHHh--C--CcEEEEEECceEEcCccccCcEEEEEEEEEEe--cCCeEEEEEEEEEecCC
Confidence 356778889998888766542111 1 12345566689999999999999999999975 335677888888743
Q ss_pred ----EEEEEEEEEEEe
Q 027147 214 ----EVVCEGEFLMAT 225 (227)
Q Consensus 214 ----~vVa~g~l~l~i 225 (227)
+++++|.++++.
T Consensus 97 ~~~~~~~a~~~~~~v~ 112 (123)
T cd03442 97 TGERRLVTSAYFTFVA 112 (123)
T ss_pred CCcEEEEEEEEEEEEE
Confidence 689999998764
No 33
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=97.88 E-value=0.00055 Score=49.90 Aligned_cols=86 Identities=12% Similarity=0.193 Sum_probs=61.1
Q ss_pred cChhHHHHHHHHHHHHHhcccccC----CCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEEC-
Q 027147 138 MPGVLMVEAMAQVGGLVMLQPEVG----GSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVG- 212 (227)
Q Consensus 138 mPGvLlIE~mAQaaa~l~~~~~~~----~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~- 212 (227)
+.+..+++.+-++...++...... .....+++..-.+++|++|+.+||+|++++++.+.. ...+.+..+++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~~~~~ 95 (110)
T cd00586 18 VNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLG--RKSFTFEQEIFRED 95 (110)
T ss_pred EchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecC--cEEEEEEEEEECCC
Confidence 455677777777776554322110 012344555556899999999999999999999753 3456778888876
Q ss_pred CEEEEEEEEEEEe
Q 027147 213 GEVVCEGEFLMAT 225 (227)
Q Consensus 213 G~vVa~g~l~l~i 225 (227)
|+++|+|+..+..
T Consensus 96 g~~~a~~~~~~~~ 108 (110)
T cd00586 96 GELLATAETVLVC 108 (110)
T ss_pred CeEEEEEEEEEEE
Confidence 9999999988765
No 34
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=97.84 E-value=0.00012 Score=57.75 Aligned_cols=77 Identities=30% Similarity=0.333 Sum_probs=48.9
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEE
Q 027147 131 HFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 210 (227)
Q Consensus 131 HFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~ 210 (227)
.|+ .+|+||.+..-.+.-+ +..+.. .+. ...+.+ .++||.+||++||+|+++++.. .+.+.+++.+.
T Consensus 41 g~~-~~iahG~~t~a~~~~~---~~~~~~-~~~--~~~~~~-~~~rF~~PV~~gDtl~~~~~~~-----~~~v~~~~~~~ 107 (122)
T cd03448 41 GFP-RPILHGLCTYGFAARA---VLEAFA-DGD--PARFKA-IKVRFSSPVFPGETLRTEMWKE-----GNRVIFQTKVV 107 (122)
T ss_pred CCC-CceehhHHHHHHHHHH---HHHHhc-CCC--cceeEE-EEEEEcCCccCCCEEEEEEEEe-----CCEEEEEEEEc
Confidence 354 5899997765544322 221111 111 122333 4899999999999999988743 24677777776
Q ss_pred ECCEEEEEEE
Q 027147 211 VGGEVVCEGE 220 (227)
Q Consensus 211 v~G~vVa~g~ 220 (227)
.+|++++++.
T Consensus 108 ~~g~~v~~g~ 117 (122)
T cd03448 108 ERDVVVLSNG 117 (122)
T ss_pred cCCcEEEECC
Confidence 6788877754
No 35
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=97.84 E-value=0.00013 Score=56.98 Aligned_cols=73 Identities=25% Similarity=0.280 Sum_probs=48.2
Q ss_pred CCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEE
Q 027147 131 HFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 210 (227)
Q Consensus 131 HFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~ 210 (227)
.|+ .+|++|.+.+-.+.+...-++.. ..+...+..+++|.+||++||+|.+++++.+++.....+.++++..
T Consensus 47 gf~-~~ivhG~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~~~~ 118 (122)
T PF01575_consen 47 GFG-GPIVHGMLTLALASGLLGDWLGP-------NPPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTVTVE 118 (122)
T ss_dssp TTS-SSB-BHHHHHHHHHHHHHHHHST-------TECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred CCC-CEEEccHHHHHHHHHHHHHhccC-------ccceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEEEEEEE
Confidence 354 69999998887766655544422 1234555678999999999999999999998765555555555544
Q ss_pred E
Q 027147 211 V 211 (227)
Q Consensus 211 v 211 (227)
+
T Consensus 119 ~ 119 (122)
T PF01575_consen 119 V 119 (122)
T ss_dssp E
T ss_pred E
Confidence 4
No 36
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=97.78 E-value=0.00044 Score=55.89 Aligned_cols=84 Identities=15% Similarity=0.041 Sum_probs=57.0
Q ss_pred CCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccC-CC----EEEEEEEEEEEeccccEEEEE
Q 027147 132 FPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIA-GD----TLVMRMTLVKLQKRFGIAKME 206 (227)
Q Consensus 132 Fp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~P-GD----~L~i~v~i~~~~~~~g~~~~~ 206 (227)
|+ .+|+||.+..-.+.....-+.. + .+.+.+ .+++|++||++ || +|+++.++..++...+.+.++
T Consensus 52 ~~-~~iahG~~~~a~~~~~~~~~~~-----~---~~~~~~-~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~ 121 (142)
T PRK13693 52 LD-TAIAHGMLTMGLGGGYVTSWVG-----D---PGAVTE-YNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIA 121 (142)
T ss_pred CC-CcEecHHHHHHHHHHHHHHhcC-----C---CcceEE-EEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEE
Confidence 54 5999998887665554332221 1 112333 37999999985 45 899999998876566788888
Q ss_pred EEEEECCEE-EEEEEEEEEe
Q 027147 207 GKAYVGGEV-VCEGEFLMAT 225 (227)
Q Consensus 207 ~~~~v~G~v-Va~g~l~l~i 225 (227)
..++++|+. +.+|+..+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~ 141 (142)
T PRK13693 122 LTATTGGKKIFGRAIASAKL 141 (142)
T ss_pred EEEEECCcEEEEEEEEEEEc
Confidence 888887665 5566666553
No 37
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=97.75 E-value=0.003 Score=47.28 Aligned_cols=106 Identities=24% Similarity=0.275 Sum_probs=72.4
Q ss_pred EEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCC
Q 027147 106 VIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGD 185 (227)
Q Consensus 106 I~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD 185 (227)
+.+++++ .+.....+... |.....++.|-.+..++-.+++.++..... .........+ +++|++|+.. +
T Consensus 6 ~~~~~~~-~~~~~~~~~~~------~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~--~~~~~~~~~~-~i~f~~p~~~-~ 74 (113)
T cd03443 6 VVEVGPG-RVVLRLPVRPR------HLNPGGIVHGGAIATLADTAGGLAALSALP--PGALAVTVDL-NVNYLRPARG-G 74 (113)
T ss_pred EEEecCC-eEEEEeeCcHh------hcCCCCeEeHHHHHHHHHHHHHHHHhhccC--CCCceEEEEE-EEeEEcCCCC-C
Confidence 3455554 55555544331 222345788888888888887766532211 1123344555 7999999999 9
Q ss_pred EEEEEEEEEEEeccccEEEEEEEEEEC-CEEEEEEEEEEE
Q 027147 186 TLVMRMTLVKLQKRFGIAKMEGKAYVG-GEVVCEGEFLMA 224 (227)
Q Consensus 186 ~L~i~v~i~~~~~~~g~~~~~~~~~v~-G~vVa~g~l~l~ 224 (227)
.|++++++.+. .+..+.++++++.+ |+++++|+.+++
T Consensus 75 ~v~~~~~v~~~--g~~~~~~~~~~~~~~~~~~a~a~~~~~ 112 (113)
T cd03443 75 DLTARARVVKL--GRRLAVVEVEVTDEDGKLVATARGTFA 112 (113)
T ss_pred eEEEEEEEEec--CceEEEEEEEEECCCCCEEEEEEEEEe
Confidence 99999999974 34578889999886 999999998875
No 38
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=97.71 E-value=0.0011 Score=46.41 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=51.9
Q ss_pred ccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEE
Q 027147 137 IMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEV 215 (227)
Q Consensus 137 ImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~v 215 (227)
++.|..+++++-.++..++...... ...+...--+++|++|+++||+|++++++.+.. ...+.++++++.+++.
T Consensus 3 ~v~~g~~~~~~d~a~~~~~~~~~~~---~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g--~~~~~~~~~v~~~~~~ 76 (79)
T PF03061_consen 3 IVHGGVYLSLFDEAASAALRSHGGD---GRGVVTVELSIDFLRPVRPGDTLRVEARVVRVG--RKSFTVEVEVYSEDGR 76 (79)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHSS---TEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEE--SSEEEEEEEEEETTSC
T ss_pred EEhHHHHHHHHHHHHHHHHHHhccC---CcceEEEEEEEEEccccCCCeEEEEEEEEEEEC--CEEEEEEEEEEECCCc
Confidence 4566677777777766655432211 244555567899999999999999999999853 4678889999985443
No 39
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=97.67 E-value=0.00016 Score=72.19 Aligned_cols=86 Identities=23% Similarity=0.410 Sum_probs=59.8
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEec----cccEEEEEEEE
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK----RFGIAKMEGKA 209 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~----~~g~~~~~~~~ 209 (227)
+..|.||.+.+-. ..+++..+. .+ ......|+++++|++||++||+|++++++..++. ..+++.++.++
T Consensus 584 g~~ia~G~l~~sl---~~~l~~~~~--~~--~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~ 656 (675)
T PRK11563 584 GGRVAHGYFVLSA---AAGLFVDPA--PG--PVLANYGLENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEV 656 (675)
T ss_pred CCceeCHHHHHHH---HHHHhhccC--cc--chhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEE
Confidence 3578999775433 333322111 11 1222346689999999999999999999998642 23578888888
Q ss_pred EE-CCEEEEEEEEEEEec
Q 027147 210 YV-GGEVVCEGEFLMATG 226 (227)
Q Consensus 210 ~v-~G~vVa~g~l~l~i~ 226 (227)
.+ +|++|++++..+++.
T Consensus 657 ~nq~G~~V~~~~~~~lv~ 674 (675)
T PRK11563 657 TNQDGELVATYDILTLVA 674 (675)
T ss_pred EECCCCEEEEEEEHHhcc
Confidence 76 799999999988764
No 40
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=97.65 E-value=0.00018 Score=71.73 Aligned_cols=86 Identities=23% Similarity=0.417 Sum_probs=59.6
Q ss_pred CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEec----cccEEEEEEEE
Q 027147 134 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK----RFGIAKMEGKA 209 (227)
Q Consensus 134 ~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~----~~g~~~~~~~~ 209 (227)
+..|.||.+.+-.+ .+++.... .+ ......|.++++|++||++||+|+++++++.++. +.+++.++..+
T Consensus 572 g~~Ia~G~l~~sl~---~~l~~~~~--~~--~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v 644 (663)
T TIGR02278 572 GKRVAHGYFVLSAA---AGLFVDPA--PG--PVLANYGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEV 644 (663)
T ss_pred CCceeCHHHHHHHH---HHHhhccC--cc--chhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEE
Confidence 35789998776443 23322111 11 1112245689999999999999999999987642 23478888887
Q ss_pred EE-CCEEEEEEEEEEEec
Q 027147 210 YV-GGEVVCEGEFLMATG 226 (227)
Q Consensus 210 ~v-~G~vVa~g~l~l~i~ 226 (227)
.+ +|++|++++.++++.
T Consensus 645 ~nq~G~~Vl~~~~~~lv~ 662 (663)
T TIGR02278 645 VNQNGEPVATYDVLTLVA 662 (663)
T ss_pred EcCCCCEEEEEEEHHhcc
Confidence 76 799999999988764
No 41
>PLN02864 enoyl-CoA hydratase
Probab=97.47 E-value=0.001 Score=60.57 Aligned_cols=82 Identities=24% Similarity=0.198 Sum_probs=53.2
Q ss_pred CCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEE
Q 027147 130 GHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKA 209 (227)
Q Consensus 130 GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~ 209 (227)
..|+ .+|++|.+..-.++.+ ++.... .+.. ..+.+. +++|.+||+|||+|.++++.. .+.+.+++.+
T Consensus 223 ~gf~-~~IaHGm~t~g~~~~~---~~~~~~-~~~~--~~~~~~-~~rF~~PV~pGdtl~~~~~~~-----~~~v~~~~~~ 289 (310)
T PLN02864 223 AGFT-RPILHGLCTLGFAVRA---VIKCFC-NGDP--TAVKTI-SGRFLLHVYPGETLVTEMWLE-----GLRVIYQTKV 289 (310)
T ss_pred CCCC-CceeccHHHHHHHHHH---HHhhhc-CCCC--ceEEEE-EEEEcCCccCCCEEEEEEEeC-----CCEEEEEEEE
Confidence 3465 6999997765544332 221111 1111 123343 899999999999998776432 3567888887
Q ss_pred EECCEEEEEEEEEEE
Q 027147 210 YVGGEVVCEGEFLMA 224 (227)
Q Consensus 210 ~v~G~vVa~g~l~l~ 224 (227)
..+|++|.+|++.+.
T Consensus 290 ~~~g~~vl~G~a~~~ 304 (310)
T PLN02864 290 KERNKAVLSGYVDLR 304 (310)
T ss_pred ecCCeEEEEEEEEEe
Confidence 678899999988764
No 42
>PRK10293 acyl-CoA esterase; Provisional
Probab=97.45 E-value=0.02 Score=46.07 Aligned_cols=127 Identities=11% Similarity=0.015 Sum_probs=74.3
Q ss_pred CHHHHHHhCCCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcc
Q 027147 86 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRE 165 (227)
Q Consensus 86 ~~~~I~~lLPHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~ 165 (227)
+.+++..+-+..+.=+|==+++++++| +++..-.++++ +.+ ...+++|=.+.-.+=-++++........+
T Consensus 8 ~~~~~~~~~~~~~~~~LGi~i~~~~~g-~~~~~~~v~~~--~~n----~~G~lHGGv~~tLaD~a~~~a~~~~~~~~--- 77 (136)
T PRK10293 8 TLEALNAMGEGNMVGLLDIRFEHIGDD-TLEATMPVDSR--TKQ----PFGLLHGGASVVLAESIGSVAGYLCTEGE--- 77 (136)
T ss_pred CHHHHhhhccccHHHhcCcEEEEEeCC-EEEEEEEcCHH--HcC----CcCcccHHHHHHHHHHHHHHHHHhcccCC---
Confidence 344555554332322333467788876 56666656543 233 23567776533322222222211111111
Q ss_pred eEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEEEEEe
Q 027147 166 NFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEFLMAT 225 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l~l~i 225 (227)
..+..---++.|.+|+..| +|+.+.++.+. .+.+..++++++. +|++++.++.++++
T Consensus 78 ~~~vTiel~infl~p~~~g-~l~a~a~vv~~--Gr~~~~~~~~v~d~~g~l~A~~~~t~~i 135 (136)
T PRK10293 78 QKVVGLEINANHVRSAREG-RVRGVCKPLHL--GSRHQVWQIEIFDEKGRLCCSSRLTTAI 135 (136)
T ss_pred ceEEEEEEEeEEecccCCc-eEEEEEEEEec--CCCEEEEEEEEEeCCCCEEEEEEEEEEE
Confidence 1122222378899999887 69999999863 3457788999987 69999999999886
No 43
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.38 E-value=0.0075 Score=46.35 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=41.1
Q ss_pred EEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEEEEEe
Q 027147 173 DKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEFLMAT 225 (227)
Q Consensus 173 ~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l~l~i 225 (227)
-+++|.+|+..| .|++++++.+. .+.+..++++++. +|+++++|+.++++
T Consensus 67 l~i~f~~p~~~g-~l~a~a~v~~~--gr~~~~~~~~i~~~~g~~va~~~~t~~~ 117 (117)
T TIGR00369 67 LNANHLRPAREG-KVRAIAQVVHL--GRQTGVAEIEIVDEQGRLCALSRGTTAV 117 (117)
T ss_pred EEeeeccccCCC-EEEEEEEEEec--CceEEEEEEEEECCCCCEEEEEEEEEcC
Confidence 378999999998 99999999864 3456778888876 79999999988764
No 44
>PLN02322 acyl-CoA thioesterase
Probab=97.31 E-value=0.028 Score=46.39 Aligned_cols=108 Identities=13% Similarity=0.015 Sum_probs=67.2
Q ss_pred EEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCC
Q 027147 105 RVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAG 184 (227)
Q Consensus 105 rI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PG 184 (227)
+++++++| +++....|+++. .+. ..+++|=.+.-.+=-++++...... .+ ....-.. -++.|.+|++.|
T Consensus 19 ~l~ei~~G-~~~~~m~v~~~~--~N~----~G~vHGGv~atLaDta~g~A~~~~~-~~--~~~vTie-l~infLrpa~~G 87 (154)
T PLN02322 19 EFDELSPT-RVTGRLPVSPMC--CQP----FKVLHGGVSALIAESLASLGAHMAS-GF--KRVAGIQ-LSINHLKSADLG 87 (154)
T ss_pred EEEEEECC-EEEEEEECCHHH--cCC----CCCccHHHHHHHHHHHHHHHHhhcc-CC--CceEEEE-EEEEEeccCCCC
Confidence 45678876 667666665543 332 3466775544333223232221111 11 1112222 368899999999
Q ss_pred CEEEEEEEEEEEeccccEEEEEEEEEE-------CCEEEEEEEEEEEe
Q 027147 185 DTLVMRMTLVKLQKRFGIAKMEGKAYV-------GGEVVCEGEFLMAT 225 (227)
Q Consensus 185 D~L~i~v~i~~~~~~~g~~~~~~~~~v-------~G~vVa~g~l~l~i 225 (227)
|+|+.+.++.+. .+.+..++++++. +|++++.++.++..
T Consensus 88 ~~L~Aea~vv~~--Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~ 133 (154)
T PLN02322 88 DLVFAEATPVST--GKTIQVWEVKLWKTTDKDKANKILISSSRVTLIC 133 (154)
T ss_pred CEEEEEEEEEec--CCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEE
Confidence 999999999974 3457788899887 27899999988854
No 45
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=97.29 E-value=0.0068 Score=49.66 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=75.5
Q ss_pred EEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCC
Q 027147 105 RVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAG 184 (227)
Q Consensus 105 rI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PG 184 (227)
++.+.++| .++|+-.|++++-=..+-..|..+ ..++|.++-++ +++.... ..++-..+ ++.|..++..|
T Consensus 30 ~~~~~~~G-rv~ce~kV~~~~~N~~k~LHGG~t---AtLvD~i~s~~-~~~~~~~-----~~gvsvdL-svsyL~~AklG 98 (148)
T KOG3328|consen 30 RIVSAEPG-RVSCELKVTPDHLNRFKTLHGGAT---ATLVDLITSAA-LLMTSGF-----KPGVSVDL-SVSYLSSAKLG 98 (148)
T ss_pred EEeeccCc-eEEEEEEeCHHHcCccccccccch---hhHHHHHhhHH-HHhccCC-----CCceEEEE-EhhhccccCCC
Confidence 78888887 789998898755432232223333 45777776655 3332211 23444444 68899999999
Q ss_pred CEEEEEEEEEEEeccccEEEEEEEEEE--CCEEEEEEEEEEEec
Q 027147 185 DTLVMRMTLVKLQKRFGIAKMEGKAYV--GGEVVCEGEFLMATG 226 (227)
Q Consensus 185 D~L~i~v~i~~~~~~~g~~~~~~~~~v--~G~vVa~g~l~l~i~ 226 (227)
|.|.+++++.+. ..+++..+++.+. +|++.++|+-+.++.
T Consensus 99 e~l~i~a~~vr~--Gk~la~t~v~l~~K~t~kiia~grhtk~~~ 140 (148)
T KOG3328|consen 99 EELEIEATVVRV--GKTLAFTDVELRRKSTGKIIAKGRHTKYFR 140 (148)
T ss_pred CeEEEEEEEeec--CceEEEEEEEEEEcCCCeEEEecceEEEee
Confidence 999999999975 3466777777765 799999999988764
No 46
>PRK10254 thioesterase; Provisional
Probab=97.21 E-value=0.068 Score=43.08 Aligned_cols=127 Identities=11% Similarity=0.029 Sum_probs=73.6
Q ss_pred HHHHHHhCCCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcce
Q 027147 87 INQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN 166 (227)
Q Consensus 87 ~~~I~~lLPHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~ 166 (227)
.++..+..+..+.=.|==++.++++| +++....++++ |.....+++|=.+.-.+=-++++........+ .
T Consensus 9 ~~~~~~~~~~~~~~~LGi~i~ei~~g-~~~~~l~v~~~------~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g---~ 78 (137)
T PRK10254 9 LDELNATSDNTMVAHLGIVYTRLGDD-VLEAEMPVDTR------THQPFGLLHGGASAALAETLGSMAGFLMTRDG---Q 78 (137)
T ss_pred HHHHhhhcccchHHhhCcEEEEEeCC-EEEEEEEcCcc------ccCCCCcchHHHHHHHHHHHHHHHHHhhCCCC---C
Confidence 44444443333322233356778776 67777666654 22223456664443322222222221111111 1
Q ss_pred EEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEEEEEec
Q 027147 167 FFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEFLMATG 226 (227)
Q Consensus 167 g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l~l~i~ 226 (227)
....---++.|.+|+..| .|+.+.++.+. .+.+..++++++. +|+++|.+++++++.
T Consensus 79 ~~vTiel~in~Lrp~~~g-~l~a~a~vi~~--Gr~~~v~~~~v~d~~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 79 CVVGTELNATHHRPVSEG-KVRGVCQPLHL--GRQNQSWEIVVFDEQGRRCCTCRLGTAVL 136 (137)
T ss_pred eEEEEEEEeEEeccCcCC-eEEEEEEEEec--CcCEEEEEEEEEcCCCCEEEEEEEEEEEe
Confidence 222222467899999877 79999999874 3457788899887 699999999998874
No 47
>PRK11688 hypothetical protein; Provisional
Probab=97.02 E-value=0.039 Score=44.85 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=42.4
Q ss_pred EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEEEEEec
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEFLMATG 226 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l~l~i~ 226 (227)
+++|.+|++ |+.|++++++.+. .+.++.++++++. +|+++|+++.+++++
T Consensus 104 ~i~fl~p~~-g~~l~a~a~v~~~--g~r~~~~~~~i~~~~g~lvA~a~~t~~v~ 154 (154)
T PRK11688 104 RVDYLRPGR-GERFTATSSVLRA--GNKVAVARMELHNEQGVHIASGTATYLVG 154 (154)
T ss_pred EEEeeccCC-CCeEEEEEEEEEc--cCCEEEEEEEEECCCCCEEEEEEEEEEeC
Confidence 688999995 9999999999974 3457788899876 699999999999874
No 48
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=96.95 E-value=0.0054 Score=47.95 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=39.9
Q ss_pred eEEEeeEEEEEEccCccCCCEEEEEEEEEEEecc-----ccEEEEEEEEE-ECCEEEEE
Q 027147 166 NFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKR-----FGIAKMEGKAY-VGGEVVCE 218 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~-----~g~~~~~~~~~-v~G~vVa~ 218 (227)
.+.+-+-.+++|++|+++||+|+++.++....++ ..++.++.+.+ .+|++|++
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v~t 131 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELVAT 131 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEEEe
Confidence 4456666899999999999999999999987554 34556677776 48999986
No 49
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.92 E-value=0.047 Score=43.58 Aligned_cols=108 Identities=21% Similarity=0.239 Sum_probs=65.3
Q ss_pred EEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeE-EEEEEccCccC
Q 027147 105 RVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI-DKVRFRKPVIA 183 (227)
Q Consensus 105 rI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi-~kvkF~~pV~P 183 (227)
+++++++| ++...-.+..+.- . ...+++|=.+.-.+=.++++.. ...... .... ..+ -++.|.+|+++
T Consensus 27 ~~~~~~~g-~~~~~l~~~~~~~--~----~~G~~HGG~i~alaD~a~~~a~-~~~~~~--~~~~-~ti~l~i~flr~~~~ 95 (141)
T COG2050 27 EIEEIEEG-EAEATLPVDPELL--N----PGGILHGGVIAALADSAAGLAA-NSLLGV--VALA-VTLELNINFLRPVKE 95 (141)
T ss_pred EEEEEecc-eEEEEeecCHHHc--C----CCceeeHHHHHHHHHHHHHHHH-hhccCc--ccee-EEEEEEehhccCCCC
Confidence 67788876 4555443433222 2 2345666555443333333332 221111 1111 333 35889999999
Q ss_pred CCEEEEEEEEEEEeccccEEEEEEEEEE--CCEEEEEEEEEEEec
Q 027147 184 GDTLVMRMTLVKLQKRFGIAKMEGKAYV--GGEVVCEGEFLMATG 226 (227)
Q Consensus 184 GD~L~i~v~i~~~~~~~g~~~~~~~~~v--~G~vVa~g~l~l~i~ 226 (227)
|+ ++.++++.+. ....+..+.+++. +|+++|+++.++++.
T Consensus 96 g~-v~a~a~v~~~--G~~~~v~~i~v~~~~~~~lva~~~~t~~v~ 137 (141)
T COG2050 96 GD-VTAEARVLHL--GRRVAVVEIEVKNDEGGRLVAKGTGTYAVL 137 (141)
T ss_pred Ce-EEEEEEEEee--CCEEEEEEEEEEECCCCeEEEEEEEEEEEe
Confidence 99 9999999975 3345667888885 458999999999874
No 50
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=96.58 E-value=0.13 Score=41.28 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=60.1
Q ss_pred EEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhc---ccccCCCcceEEEeeEEEEEEccCc
Q 027147 105 RVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML---QPEVGGSRENFFFAGIDKVRFRKPV 181 (227)
Q Consensus 105 rI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~---~~~~~~~~~~g~L~gi~kvkF~~pV 181 (227)
+|+++++| +++....+.+|.+.+..-|- |++. .++-+++..+. ....... ....... -+++|.+|+
T Consensus 15 ~v~e~~~g-~~~v~~pl~~n~N~~G~~hG------G~l~--tlad~a~~~~~~~~~~~~~~~-~~~vt~~-~~i~yl~P~ 83 (138)
T TIGR02447 15 AVSSYTGG-ELRLSAPLAANINHHGTMFG------GSLY--TLATLSGWGLLWLRLQELGID-GDIVIAD-SHIRYLAPV 83 (138)
T ss_pred EEEEeeCC-EEEEEeECCCCcCCCCceeh------hHHH--HHHHHHHHHHHHHHHHHhCCC-CcEEEEE-eeeEEcCCc
Confidence 56778875 66766667776444332222 2222 22222222111 1111111 1223333 478999999
Q ss_pred cCCCEEEEEEEEEE-----------EeccccEEEEEEEEEECCEEEEEEEEEEEec
Q 027147 182 IAGDTLVMRMTLVK-----------LQKRFGIAKMEGKAYVGGEVVCEGEFLMATG 226 (227)
Q Consensus 182 ~PGD~L~i~v~i~~-----------~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i~ 226 (227)
+.+ +.+++++.. .+..+..+.++++++.+|+++++++-++++.
T Consensus 84 ~~~--~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~~~~lvA~~~g~~~~~ 137 (138)
T TIGR02447 84 TGD--PVANCEAPDLESWEAFLATLQRGGKARVKLEAQISSDGKLAATFSGEYVAL 137 (138)
T ss_pred CCC--eEEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEECCEEEEEEEEEEEEe
Confidence 754 555555521 1233456678999999999999988887754
No 51
>PRK10694 acyl-CoA esterase; Provisional
Probab=96.57 E-value=0.069 Score=42.76 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=56.3
Q ss_pred ccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE----C
Q 027147 137 IMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV----G 212 (227)
Q Consensus 137 ImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v----~ 212 (227)
.+.|=.++..|-.++++...... + .......++.+.|++|++.||.|++++++.+.. ...+.++++++. .
T Consensus 28 ~lfGG~ll~~~D~~a~i~a~~~~--~--~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g--~sS~~v~v~v~~~~~~~ 101 (133)
T PRK10694 28 DIFGGWLMSQMDIGGAILAKEIA--H--GRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTG--TTSISINIEVWVKKVAS 101 (133)
T ss_pred cEeHHHHHHHHHHHHHHHHHHHc--C--CceEEEEECceEECCCcccCcEEEEEEEEEEcc--CceEEEEEEEEEeeccc
Confidence 45566677777776666543211 1 345788999999999999999999999998753 244566666664 1
Q ss_pred ---C--EEEEEEEEEEE
Q 027147 213 ---G--EVVCEGEFLMA 224 (227)
Q Consensus 213 ---G--~vVa~g~l~l~ 224 (227)
| ..++++.+++.
T Consensus 102 ~~~g~~~~~~~~~~tfV 118 (133)
T PRK10694 102 EPIGQRYKATEALFTYV 118 (133)
T ss_pred CCCCcEEEEEEEEEEEE
Confidence 1 24677777764
No 52
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=96.50 E-value=0.06 Score=41.22 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=45.1
Q ss_pred eEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEE
Q 027147 166 NFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 224 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~ 224 (227)
.++...--.++|++|++.||.|.+++++.+.. .....+..+++.+|+++|+|+.+..
T Consensus 51 ~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~--~~~~~~~~~i~~~g~~~a~~~~~~v 107 (126)
T TIGR02799 51 LVFVVRSMELDYLKPARLDDLLTVTTRVVELK--GASLVFAQEVRRGDTLLCEATVEVA 107 (126)
T ss_pred cEEEEEEEEEEEcCcccCCCEEEEEEEEEecC--ceEEEEEEEEEeCCEEEEEEEEEEE
Confidence 44555556789999999999999999998753 2445677778889999999987764
No 53
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=96.40 E-value=0.15 Score=39.62 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=43.4
Q ss_pred eEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEEEEEe
Q 027147 166 NFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEFLMAT 225 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l~l~i 225 (227)
.++...=-+++|++|++.||+|+++..+.+... ....+..++.. +|+++++|+.+.+.
T Consensus 52 ~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~--~s~~~~~~i~~~~g~~~a~~~~~~v~ 110 (130)
T PRK10800 52 VAFVVRKMTVEYYAPARLDDMLEVQSEITSMRG--TSLTFTQRIVNAEGTLLNEAEVLIVC 110 (130)
T ss_pred CEEEEEEEEEEEcCcccCCCEEEEEEEEEeeCc--EEEEEEEEEEcCCCeEEEEEEEEEEE
Confidence 444444457899999999999999999998632 33455666665 79999999887764
No 54
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=96.20 E-value=0.14 Score=38.90 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=43.9
Q ss_pred ceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE--CCEE--EEEEEEEEEe
Q 027147 165 ENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV--GGEV--VCEGEFLMAT 225 (227)
Q Consensus 165 ~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v--~G~v--Va~g~l~l~i 225 (227)
+.++...--+++|++|+..||.+++++++.+.. ...+.+..+++. +|+. +|+|+.++..
T Consensus 41 ~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~--~~s~~~~~~i~~~~~g~~~~~a~~~~~~v~ 103 (121)
T PF13279_consen 41 GIGFVVAESEIDYLRPLRFGDRLEVETRVEEIG--GKSFRFEQEIFRPADGKGELAATGRTVMVF 103 (121)
T ss_dssp TEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEE--SSEEEEEEEEEECSTTEEEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEEcccccCCCEEEEEEEEEEEC--CcEEEEEEEEEEcCCCceEEEEEEEEEEEE
Confidence 455666656899999999999999999998753 356788888888 7877 8888887654
No 55
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=96.20 E-value=0.091 Score=42.04 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=46.5
Q ss_pred eEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEe
Q 027147 166 NFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMAT 225 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i 225 (227)
..+...=-.++|++|++.||.|+++.++.+.+. ..+.+.-+++.+++++++|+.+++.
T Consensus 55 ~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~--~s~~~~~~i~~~~~l~a~~~~~~V~ 112 (137)
T COG0824 55 IAFVVVEAEIDYLRPARLGDVLTVRTRVEELGG--KSLTLGYEIVNEDELLATGETTLVC 112 (137)
T ss_pred cEEEEEEEEeEECCCccCCCEEEEEEEEEeecC--eEEEEEEEEEeCCEEEEEEEEEEEE
Confidence 344444457899999999999999999998633 4567888898988999999988764
No 56
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=95.69 E-value=0.056 Score=39.42 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=42.4
Q ss_pred EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEEC-CEEEEEEEEEEE
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVG-GEVVCEGEFLMA 224 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~-G~vVa~g~l~l~ 224 (227)
++.|++|..+|+.+.+++++.+ ..++++..+++++.+ |++++++...+.
T Consensus 49 ~i~F~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~i~~~~G~lva~~~~~~~ 98 (99)
T cd00556 49 HIYFHRPGDADEWLLYEVESLR--DGRSRALRRGRAYQRDGKLVASATQSFL 98 (99)
T ss_pred EEEEcCCCCCCccEEEEEEecc--cCCCceEEEEEEECCCCcEEEEEEEeEc
Confidence 6889999999999999999986 355788899999987 999999887764
No 57
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=95.58 E-value=0.36 Score=40.08 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE------CCEE
Q 027147 142 LMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV------GGEV 215 (227)
Q Consensus 142 LlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v------~G~v 215 (227)
-++..|-.++++.+.... .+..+.++++.+.|.+||+.||.|.+.+++.+.. +.-..+.++++. .-..
T Consensus 35 ~lm~~mD~~a~i~A~~~a----~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~G--rTSm~V~Vev~~~~~~~~~~~~ 108 (157)
T COG1607 35 WLLSWMDLAAAIAASRHA----GGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTG--RTSMEVGVEVWAEDIRSGERRL 108 (157)
T ss_pred HHHHHHHHHHHHHHHHHh----CCeEEEEEeceEEEccccccCcEEEEEEEEeecC--cccEEEEEEEEEecccCCcceE
Confidence 355677777776654322 1355788999999999999999999999999752 233455555554 2234
Q ss_pred EEEEEEEEE
Q 027147 216 VCEGEFLMA 224 (227)
Q Consensus 216 Va~g~l~l~ 224 (227)
++++.+++.
T Consensus 109 ~t~~~ft~V 117 (157)
T COG1607 109 ATSAYFTFV 117 (157)
T ss_pred eeeEEEEEE
Confidence 566777664
No 58
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=95.53 E-value=0.0034 Score=55.15 Aligned_cols=84 Identities=29% Similarity=0.407 Sum_probs=51.5
Q ss_pred CCCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCcc--------CCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcc
Q 027147 94 LPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFF--------PGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRE 165 (227)
Q Consensus 94 LPHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF--------~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~ 165 (227)
.|||.|- +++++-..+-..+.+.++.|.+.. ..-|+ .|+++|.|..-..+-..++... +
T Consensus 147 ~p~r~pd----~~v~~~ts~DqaAlyrlsgD~NPLHiDPe~A~~agFe-tpilHGlc~lg~~~riv~a~~~-----~--- 213 (272)
T KOG1206|consen 147 VPHRDPD----AVVERFTSEDQAALYRLSGDHNPLHIDPESALEAGFE-TPILHGLCTLGFSARIVGAQFP-----P--- 213 (272)
T ss_pred CCCcCcc----hheeecchhhHHHHHHhcCCCCccccCHHHHHhcCCC-CchhhhHHHhhhhHHHHHHhcC-----c---
Confidence 6887664 444443222245566677666543 22343 6999998888776665444331 0
Q ss_pred eEEEeeEEEEEEccCccCCCEEEEEEE
Q 027147 166 NFFFAGIDKVRFRKPVIAGDTLVMRMT 192 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~PGD~L~i~v~ 192 (227)
. .. ...+++|..||.|||+|...+.
T Consensus 214 a-~y-~~~kvrF~spV~pGdtll~~~w 238 (272)
T KOG1206|consen 214 A-VY-KAQKVRFSSPVGPGDTLLVLVW 238 (272)
T ss_pred h-hh-heeeeeecCCCCCchhHHHHHH
Confidence 1 12 2358999999999999876543
No 59
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=95.46 E-value=0.52 Score=35.14 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=37.4
Q ss_pred eEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEEC-CEEEEEEEE
Q 027147 166 NFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVG-GEVVCEGEF 221 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~-G~vVa~g~l 221 (227)
.++...--.++|++|++.||+|.++..+.+.. .....+..+++.+ |+.++.+..
T Consensus 47 ~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~--~~s~~~~~~i~~~~~~~~~~~~~ 101 (117)
T TIGR00051 47 VAFVVVNINIEYKKPARLDDVLEIRTQIEELN--GFSFVFSQEIFNEDEALLKAATV 101 (117)
T ss_pred CEEEEEEEEEEECCcccCCCEEEEEEEEEecC--cEEEEEEEEEEeCCCcEEEeeEE
Confidence 44444445789999999999999999998753 2345566666664 455544443
No 60
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=94.92 E-value=0.38 Score=38.16 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=51.5
Q ss_pred EEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCC
Q 027147 105 RVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAG 184 (227)
Q Consensus 105 rI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PG 184 (227)
+|.+++++ +++..-. ..+....|+-. +.|.. +=.+|..++.++.....+. ....+..+ -+++|++|.+
T Consensus 22 ~i~~~~~~-~~~v~l~---~~~~~~N~~gt---~h~gA-l~~laE~~~g~~~~~~l~~-~~~~~~k~-~~i~f~kpa~-- 89 (132)
T PF14539_consen 22 RIEEVDPG-RVVVRLP---LRPRNRNHVGT---IHAGA-LFTLAEPAYGLLLMSNLGD-KYRVWDKS-AEIDFLKPAR-- 89 (132)
T ss_dssp EEEEEETT-EEEEEE----S-CCGB-TTSS---B-HHH-HHHHHHCHHHHHHHHHS-T-TEEEEEEE-EEEEE-S-----
T ss_pred EEEEEcCC-EEEEEEc---CCccccCcCcc---hHHHH-HHHHHHHHHHHHHHHhCCC-cEEEEEEe-eEEEEEeccC--
Confidence 67788876 4444432 23334445432 22221 1234443333222111112 23333343 3788988842
Q ss_pred CEEEEEEEEEEE-eccccEEEEEEEEEE-CCEEEEEEEEEEEe
Q 027147 185 DTLVMRMTLVKL-QKRFGIAKMEGKAYV-GGEVVCEGEFLMAT 225 (227)
Q Consensus 185 D~L~i~v~i~~~-~~~~g~~~~~~~~~v-~G~vVa~g~l~l~i 225 (227)
..|+.++++... .+..+...+++.++. +|++|++++++.++
T Consensus 90 g~v~a~~~~~~e~~~~~~~~~~~v~i~D~~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 90 GDVTATAELTEEQIGERGELTVPVEITDADGEVVAEATITWYV 132 (132)
T ss_dssp S-EEEEEE-TCCHCCHEEEEEEEEEEEETTC-EEEEEEEEEEE
T ss_pred CcEEEEEEcCHHHhCCCcEEEEEEEEEECCCCEEEEEEEEEEC
Confidence 456666666642 122445567777776 79999999999865
No 61
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=94.84 E-value=0.41 Score=41.72 Aligned_cols=125 Identities=22% Similarity=0.237 Sum_probs=81.8
Q ss_pred CCCHHHHHHh-----CCCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhccc
Q 027147 84 VMDINQIRDI-----LPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQP 158 (227)
Q Consensus 84 ~l~~~~I~~l-----LPHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~ 158 (227)
.++.+++-+. +-|.+.|.-|++|.. +.+.+...+..+..-.... ..+-| .+++++.|++++++ ..
T Consensus 152 ~~~~~~~Y~~~~~~gl~~g~~fr~i~~i~~----~~~~~~~~~~~~~~~~~~~---~~l~P--~llD~~lq~~~~~~-~~ 221 (295)
T PF14765_consen 152 PLDIEEFYERLAERGLFYGPRFRGIESIRR----GEALAEVRLPDDPASDPDP---FVLHP--ALLDAALQAAGLAL-WE 221 (295)
T ss_dssp EEHHHHHHHHHHHTTEEEHGGGHHEEEEEE----SEEEEEEECGTTTGGGGGG---SSS-H--HHHHHHHHGHGCCH-TS
T ss_pred ccchHHHHHhHHhcCCccCCcccchhhhhh----ccceEEEEEEeeccCCCCc---eeECH--HHHHHHHHHHHHHh-cc
Confidence 4566665544 477889999999887 3466666665322111111 12223 58999999776544 21
Q ss_pred ccCCCcceEEEeeEEEEEEcc-CccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEE
Q 027147 159 EVGGSRENFFFAGIDKVRFRK-PVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEF 221 (227)
Q Consensus 159 ~~~~~~~~g~L~gi~kvkF~~-pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l 221 (227)
. .......+..+++++++.+ +..+++.+.+.+++.. ...+.+.++..++. +|+++++.+=
T Consensus 222 ~-~~~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dv~v~d~~G~~~~~~~g 283 (295)
T PF14765_consen 222 D-DDRGRVFLPVSIERIRIFRAPPPPGDRLYVYARLVK--SDDDTITGDVTVFDEDGRVVAELEG 283 (295)
T ss_dssp T-TTTTSEEEEEEEEEEEESSS--SSTSEEEEEEEEES--TTTTEEEEEEEEEETTSBEEEEEEE
T ss_pred c-cCCCCEEcccEeCEEEEEeccCCCCCEEEEEEEEec--ccceEEEEEEEEECCCCCEEEEEcc
Confidence 1 1233577888999999995 7788999999998853 45567888888886 8999987543
No 62
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=94.68 E-value=0.37 Score=42.21 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=42.9
Q ss_pred EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEE
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 224 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~ 224 (227)
.+.|.++..++..++++|++++ +.+.+....++++.+|++++.+...+.
T Consensus 50 h~~Fl~~~~~~~pv~~~V~~lR--~GRs~~~r~V~~~Q~g~~~~~a~asf~ 98 (271)
T TIGR00189 50 HSYFVRAGDPKKPIIYDVERLR--DGRSFITRRVKAVQHGKTIFTLQASFQ 98 (271)
T ss_pred EEEecCCCCCCCCEEEEEEEee--CCCceEEEEEEEEECCEEEEEEEEEcc
Confidence 6789999999999999998886 556788899999999999999988764
No 63
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=94.62 E-value=1.1 Score=33.59 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=42.2
Q ss_pred EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEE
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 224 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~ 224 (227)
..-|.+|+.++..+++++++.+ +.+.+....+++..+|++++.+...+.
T Consensus 45 ~~~Fl~p~~~~~pv~~~v~~lr--~GRs~~~~~V~~~Q~g~~~~~a~~sf~ 93 (94)
T cd03445 45 HSYFLRPGDPDQPIEYEVERLR--DGRSFATRRVRAVQNGKVIFTATASFQ 93 (94)
T ss_pred EEEecCCCCCCCCEEEEEEEEE--CCCcEEEEEEEEEECCEEEEEEEEEEe
Confidence 6789999999999999999886 456788889999999999998887764
No 64
>PLN02647 acyl-CoA thioesterase
Probab=94.22 E-value=1.6 Score=41.92 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=57.3
Q ss_pred cChhHHHHHHHHHHHHHhcccccC----CCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEEC-
Q 027147 138 MPGVLMVEAMAQVGGLVMLQPEVG----GSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVG- 212 (227)
Q Consensus 138 mPGvLlIE~mAQaaa~l~~~~~~~----~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~- 212 (227)
+-|=-++|.|-++|++........ ..+...+-++++++.|++|+..||.|++..++.... + .-..+.++++..
T Consensus 111 l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt~vG-r-SSMEV~v~V~~~~ 188 (437)
T PLN02647 111 VRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVTWVG-R-SSMEIQLEVIQPT 188 (437)
T ss_pred EeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEEEec-C-CeEEEEEEEEEcc
Confidence 344567888888888765432211 111257788999999999999999999999999752 2 223444455442
Q ss_pred -------CEEEEEEEEEEE
Q 027147 213 -------GEVVCEGEFLMA 224 (227)
Q Consensus 213 -------G~vVa~g~l~l~ 224 (227)
...+++|.++|.
T Consensus 189 ~~~~~~~~~~~~~a~FtfV 207 (437)
T PLN02647 189 KDESNTSDSVALTANFTFV 207 (437)
T ss_pred ccCCCCcEEEEEEEEEEEE
Confidence 235788888875
No 65
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=94.14 E-value=1 Score=38.83 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=40.6
Q ss_pred EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEe
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMAT 225 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i 225 (227)
.+.|.+|+.+| .++++++..+ ..+.+...+++++.+|++++.+...+..
T Consensus 40 ~~~fl~p~~~~-~~~~~v~~~r--~Gr~~~~~~v~~~q~~~~~~~a~~~f~~ 88 (255)
T PF13622_consen 40 HVYFLRPVPPG-PVEYRVEVLR--DGRSFSTRQVELSQDGKVVATATASFGR 88 (255)
T ss_dssp EEEESS--BSC-EEEEEEEEEE--ESSSEEEEEEEEEETTEEEEEEEEEEE-
T ss_pred EeEeccccccC-CEEEEEEEee--CCCcEEEEEEEEEECCcCEEEEEEEEcc
Confidence 68899999999 9999999986 4557888999999999999999988754
No 66
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=93.91 E-value=0.7 Score=41.43 Aligned_cols=78 Identities=8% Similarity=-0.063 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEE
Q 027147 139 PGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCE 218 (227)
Q Consensus 139 PGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~ 218 (227)
.++..=..+||+..+...... . ++..-.-.+-|.+|..++..++++|+..+ +.+.+....++++.+|++++.
T Consensus 32 r~~fGGqv~AQal~AA~~tv~---~---~~~~hSlh~~Fl~pg~~~~pi~y~Ve~lR--dGRSfstr~V~a~Q~g~~if~ 103 (286)
T PRK10526 32 RQVFGGQVVGQALYAAKETVP---E---ERLVHSFHSYFLRPGDSQKPIIYDVETLR--DGNSFSARRVAAIQNGKPIFY 103 (286)
T ss_pred CceechHHHHHHHHHHHhcCC---C---CCCceEEEEEcCCCCCCCCCEEEEEEEEe--CCCceEeEEEEEEECCEEEEE
Confidence 344444557777655443211 1 12222235779999999999999998875 556788899999999999999
Q ss_pred EEEEEE
Q 027147 219 GEFLMA 224 (227)
Q Consensus 219 g~l~l~ 224 (227)
+.+.+.
T Consensus 104 ~~~sF~ 109 (286)
T PRK10526 104 MTASFQ 109 (286)
T ss_pred EEEEec
Confidence 988775
No 67
>COG5496 Predicted thioesterase [General function prediction only]
Probab=93.40 E-value=3.4 Score=33.18 Aligned_cols=84 Identities=18% Similarity=0.093 Sum_probs=55.3
Q ss_pred ccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEE
Q 027147 137 IMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVV 216 (227)
Q Consensus 137 ImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vV 216 (227)
++--..|+-.|-.++--++...-..+.-..|. . -+++-..++.||.++++.+++.+.. +.-++|+..+..+|+++
T Consensus 30 VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~--e-v~vrHla~~~~G~~V~i~~~l~~v~--Gr~v~f~i~a~~~~~~I 104 (130)
T COG5496 30 VLATPAMIGFMENASYELLQPYLDNGETTVGT--E-VLVRHLAATPPGLTVTIGARLEKVE--GRKVKFRIIAMEGGDKI 104 (130)
T ss_pred eeehHHHHHHHHHHHHHHHHhhCcCCcceeeE--E-EEeeeccCCCCCCeEEEEEEEEEEe--ccEEEEEEEEeeCCcEE
Confidence 33334566666555544443211122222222 2 3678889999999999999999863 35678888888999999
Q ss_pred EEEEEEEEe
Q 027147 217 CEGEFLMAT 225 (227)
Q Consensus 217 a~g~l~l~i 225 (227)
.+|+.+=.+
T Consensus 105 g~g~h~R~i 113 (130)
T COG5496 105 GEGTHTRVI 113 (130)
T ss_pred eeeEEEEEE
Confidence 999876443
No 68
>PLN02647 acyl-CoA thioesterase
Probab=93.38 E-value=1.8 Score=41.43 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEec-c--ccEEEEEEEEEE------C
Q 027147 142 LMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK-R--FGIAKMEGKAYV------G 212 (227)
Q Consensus 142 LlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~-~--~g~~~~~~~~~v------~ 212 (227)
.++..|-.+|++.+.... + ...+...++++.|++||..||.|.+++.+..... . ...+.+++.+++ .
T Consensus 312 ~LM~~~De~A~i~A~r~a--~--~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~ 387 (437)
T PLN02647 312 FLMRRAFELAFSTAYAFA--G--LRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTRPELRS 387 (437)
T ss_pred HHHHHHHHHHHHHHHHHc--C--CceEEEEecceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEcCCCCc
Confidence 445555555554432211 1 2457889999999999999999999988875421 1 123445555554 3
Q ss_pred CEEEEEEEEEEEe
Q 027147 213 GEVVCEGEFLMAT 225 (227)
Q Consensus 213 G~vVa~g~l~l~i 225 (227)
++++.++-++|..
T Consensus 388 ~~~~n~~~fTfva 400 (437)
T PLN02647 388 SEVSNTFYFTFTV 400 (437)
T ss_pred ceEEEEEEEEEEE
Confidence 4556677777754
No 69
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.70 E-value=2.1 Score=41.36 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=41.1
Q ss_pred EEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEEEEEe
Q 027147 173 DKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEFLMAT 225 (227)
Q Consensus 173 ~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l~l~i 225 (227)
-+++|++|++.||+|+++..+.+.. .....+..+++. +|+++++|+.+++.
T Consensus 401 ~~i~y~rp~~~gD~v~I~t~v~~~~--~~s~~~~~~i~~~~g~l~A~g~~~~v~ 452 (495)
T PRK07531 401 THIRHLGEAKAGQALHVETQLLSGD--EKRLHLFHTLYDAGGELIATAEHMLLH 452 (495)
T ss_pred EEEEEcccCCCCCEEEEEEEEEecC--CcEEEEEEEEECCCCcEEEEEEEEEEE
Confidence 4789999999999999999998753 245566777776 78999999887654
No 70
>PLN02864 enoyl-CoA hydratase
Probab=90.03 E-value=3 Score=38.01 Aligned_cols=58 Identities=17% Similarity=0.379 Sum_probs=44.4
Q ss_pred EEeeEEEEEEccCccCCCEEEEEEEEEEEeccc--cEEEEEEEEEE--CCEEEEEEEEEEEe
Q 027147 168 FFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRF--GIAKMEGKAYV--GGEVVCEGEFLMAT 225 (227)
Q Consensus 168 ~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~--g~~~~~~~~~v--~G~vVa~g~l~l~i 225 (227)
.+=+-+.+++++|+.+|++|++++++....+++ -++.++.+++. +|+++++.+.++.+
T Consensus 94 lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~ 155 (310)
T PLN02864 94 LLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFL 155 (310)
T ss_pred eeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEE
Confidence 444558899999999999999999998775433 23566666655 79999988887765
No 71
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=89.43 E-value=9.6 Score=31.09 Aligned_cols=110 Identities=21% Similarity=0.254 Sum_probs=54.7
Q ss_pred EEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccc--cCCCcceEEEeeEEEEEEccCcc
Q 027147 105 RVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE--VGGSRENFFFAGIDKVRFRKPVI 182 (227)
Q Consensus 105 rI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~--~~~~~~~g~L~gi~kvkF~~pV~ 182 (227)
+|+++++ +.++...-..+|-+.-...|- |++. .++-++|+.+.+.. ..+.....++.. .+++|++||.
T Consensus 21 ~v~~~~~-~~l~~~APL~pN~N~~~T~Fg------GSl~--slatLaGW~lv~l~l~e~~~~~~IVi~~-~~i~Y~~Pv~ 90 (144)
T PF09500_consen 21 KVTSYTG-QRLELSAPLAPNINHHGTMFG------GSLY--SLATLAGWGLVWLQLKEAGLNGDIVIAD-SNIRYLKPVT 90 (144)
T ss_dssp EEEEEET-TEEEEE--SGGGB-TTSSB-H------HHHH--HHHHHHHHHHHHHHHHHHT---EEEEEE-EEEEE-S---
T ss_pred EEEEEcC-CEEEEeccCCCCcCCCCCcch------HHHH--HHHHHHHHHHHHHHHHHhCCCCcEEEEe-CceEEcCCCC
Confidence 5778886 477777767776665444454 3332 34444554332211 112223445554 4799999995
Q ss_pred CCCEEEEEEEEEEE-----------eccccEEEEEEEEEECCEEEEEEEEEEEec
Q 027147 183 AGDTLVMRMTLVKL-----------QKRFGIAKMEGKAYVGGEVVCEGEFLMATG 226 (227)
Q Consensus 183 PGD~L~i~v~i~~~-----------~~~~g~~~~~~~~~v~G~vVa~g~l~l~i~ 226 (227)
-. ++.++++... +..+..+.++++++.+|+.+++.+-.+++.
T Consensus 91 ~d--~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~~~~~~a~f~G~yv~l 143 (144)
T PF09500_consen 91 GD--FTARCSLPEPEDWERFLQTLARGGRARITLEVEIYSGGELAAEFTGRYVAL 143 (144)
T ss_dssp S----EEEEE-------S---GGGGCTS-EEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CC--cEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 33 4444444410 334456677888899999998877766654
No 72
>PLN02868 acyl-CoA thioesterase family protein
Probab=88.05 E-value=4.6 Score=37.92 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=58.0
Q ss_pred CccCCC-CCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEE
Q 027147 126 NFFPGH-FPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAK 204 (227)
Q Consensus 126 ~fF~GH-Fp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~ 204 (227)
.-|.|. -|+.++.+++..=..+||+..+...... .+ . .+..+ ...|..+..++..++++|+..+ +.+.+..
T Consensus 144 ~~f~~~~~~~~~~~~~~fGG~~~aqal~Aa~~~~~-~~--~--~~~s~-~~~Fl~~~~~~~pv~~~V~~lr--~Grs~~~ 215 (413)
T PLN02868 144 DIFRGITLPDAPTFGKVFGGQLVGQALAAASKTVD-PL--K--LVHSL-HAYFLLVGDINLPIIYQVERIR--DGHNFAT 215 (413)
T ss_pred CeEECCcCCCCcccccccchHHHHHHHHHHHccCC-CC--C--CceEe-eeeecCCCCCCCCEEEEEEEEc--CCCceEe
Confidence 334443 3344555666666678887665543211 01 1 12222 5668766666666888888875 5567888
Q ss_pred EEEEEEECCEEEEEEEEEEE
Q 027147 205 MEGKAYVGGEVVCEGEFLMA 224 (227)
Q Consensus 205 ~~~~~~v~G~vVa~g~l~l~ 224 (227)
..++++.+|++++.+.+.+.
T Consensus 216 r~v~~~Q~g~~~~~~~~sf~ 235 (413)
T PLN02868 216 RRVDAIQKGKVIFTLFASFQ 235 (413)
T ss_pred eEEEEEECCeeEEEEeeccc
Confidence 99999999999998887764
No 73
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=86.59 E-value=3.7 Score=47.32 Aligned_cols=119 Identities=16% Similarity=0.172 Sum_probs=79.7
Q ss_pred hCCCCCCeeeeeEEEEEcCCcEEEEEEEeCCCCCccCCCCCCCCcc--ChhHHHHHHHHHHHHHhcccccCCCcceEEEe
Q 027147 93 ILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIM--PGVLMVEAMAQVGGLVMLQPEVGGSRENFFFA 170 (227)
Q Consensus 93 lLPHr~PmllVDrI~~~~~g~~~~a~k~Vt~ne~fF~GHFp~~PIm--PGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~ 170 (227)
.|=|.+-|.-|.+|+.+++. .+.+...+..-..--.|.|+..+.- --.++++...|+..+|..... +. ...-.
T Consensus 2444 ~LFHGp~~qgI~~v~~~~~~-~~~~~~~~~~~~~~~~g~f~~~~~~~~~~p~~~D~~~Q~~~vW~~~~~--g~--~sLP~ 2518 (2582)
T TIGR02813 2444 TLFHGPRLQGIKAVLAFDDQ-GLLAKCQLPAVASLDCGEFPPSPLNSGSQPFAEDILLQAMLVWARLKY--GA--ASLPS 2518 (2582)
T ss_pred ceecCcchhhhHHhhhcCCc-CceeEeecCCCChhhccCCccccCccccChhHHHHHHHHHHHHHHHhc--CC--CCCCc
Confidence 56799999999999999874 4555554443222224666653211 113688999999888764332 11 12345
Q ss_pred eEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEE
Q 027147 171 GIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCE 218 (227)
Q Consensus 171 gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~ 218 (227)
.+.+++.+++..+|+...+.+++.+.. ..-+.++..++. +|+++++
T Consensus 2519 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~d~~~~~~~g~~~~~ 2565 (2582)
T TIGR02813 2519 SIGEFVSYRPVSLGEKFYLKLDVVKSS--GRSLVANIELYHQDGRLSSE 2565 (2582)
T ss_pred ccceEEEecCCCCCCceEEEEEEEecc--CCeEEEEEEEECCCCcEEEE
Confidence 678899889999999999999998753 345567777665 7888775
No 74
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=84.77 E-value=21 Score=31.33 Aligned_cols=82 Identities=6% Similarity=0.000 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHhcccc-----------cCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEE
Q 027147 141 VLMVEAMAQVGGLVMLQPE-----------VGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKA 209 (227)
Q Consensus 141 vLlIE~mAQaaa~l~~~~~-----------~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~ 209 (227)
..++++|.++++......+ .... +..++..=-.+++.+...-||+|+++-...... +-.+.-.+.+
T Consensus 24 ~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~-~~~Wvl~r~~i~i~r~P~~~e~i~i~Tw~~~~~--~~~~~R~f~i 100 (261)
T PF01643_consen 24 SALLNYFQEAATEHAESLGFGMDYFGSTPELKKQ-GLAWVLSRYQIEIHRYPRWGEKITIETWPSGFK--RFFAYRDFEI 100 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SHHH------HHCT-TEEEEEEEEEEEESS--BTT-EEEEEEEEEEE---SSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhc-CcEEEEEEEEEEEEecCCCCCEEEEEEEeccCC--CcEEEEEEEE
Confidence 4588888888876542111 1112 233444334789999999999999999888643 3455667788
Q ss_pred EE--CCEEEEEEEEEEEe
Q 027147 210 YV--GGEVVCEGEFLMAT 225 (227)
Q Consensus 210 ~v--~G~vVa~g~l~l~i 225 (227)
+. +|+++++|+-..++
T Consensus 101 ~d~~~G~~l~~a~s~Wvl 118 (261)
T PF01643_consen 101 YDAEDGELLARATSIWVL 118 (261)
T ss_dssp E--TTS-EEEEEEEEEEE
T ss_pred EECCCCcEEEEEEEEEEE
Confidence 88 89999998876654
No 75
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=84.50 E-value=1.8 Score=49.86 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=43.0
Q ss_pred EEEEEeCC-CCCccCCCCC-CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCcc-CCC
Q 027147 116 VAIKNVTI-NDNFFPGHFP-ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVI-AGD 185 (227)
Q Consensus 116 ~a~k~Vt~-ne~fF~GHFp-~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~-PGD 185 (227)
.....++. .++|...|-. |+||+|+++.+|+|++++..... -+.+++++|+++.|. .|+
T Consensus 2298 ~~~~~l~~~~~pfl~dH~i~g~~vlP~~~~~~w~~~~~~~~~p-----------~~~~~~d~~vlkgivfd~~ 2359 (2582)
T TIGR02813 2298 RVMRTLDPKNMTFIADHCIGGDKVLPTVCAIAWMREAAMVALG-----------AFVGVADYKLLKGVIFDGS 2359 (2582)
T ss_pred eeEeeeccccCchHHhcccCCeeechHHHHHHHHHHHHHHhCC-----------CceeeeeeeeecceEecCC
Confidence 34455553 6788899966 68999999999999998765442 126789999777765 554
No 76
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=79.99 E-value=9.2 Score=36.03 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEE
Q 027147 142 LMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEF 221 (227)
Q Consensus 142 LlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l 221 (227)
.+.|.+.|++.-.+... .++...+..+ .+-|.+||.-.++|++.-++... .+..++++++++.+|+.|+++-+
T Consensus 354 v~~~ll~e~~qr~l~k~----~~~niiIE~i-~iyflk~vqid~~l~I~prIl~~--gR~~a~idvei~~~~~ivaKAiv 426 (432)
T COG4109 354 VFTELLTEVVQRVLRKK----KKRNIIIENI-TIYFLKPVQIDSVLEIYPRILEE--GRKFAKIDVEIYHDGQIVAKAIV 426 (432)
T ss_pred HHHHHHHHHHHHHHHHh----cCCceEEEee-eeeeecceecccEEEEeeeeecc--ccccceeEEEEeeCcchhhhhee
Confidence 34555555544333221 1233444444 56799999999999999999874 44577899999999999999988
Q ss_pred EEEe
Q 027147 222 LMAT 225 (227)
Q Consensus 222 ~l~i 225 (227)
++-+
T Consensus 427 ~~ql 430 (432)
T COG4109 427 TVQL 430 (432)
T ss_pred eeec
Confidence 7755
No 77
>PLN02370 acyl-ACP thioesterase
Probab=77.05 E-value=71 Score=30.60 Aligned_cols=95 Identities=7% Similarity=-0.008 Sum_probs=58.4
Q ss_pred ccCCCCCCCCccChhHHHHHHHHHHHHHhccccc-----C-----CCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEE
Q 027147 127 FFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEV-----G-----GSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKL 196 (227)
Q Consensus 127 fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~-----~-----~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~ 196 (227)
||+..+.+.--++ .++.+|-+++.......+. + ...+.++...=-+++|.++..-||+|+++..+...
T Consensus 148 ~yEvD~~g~lsl~--~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~ 225 (419)
T PLN02370 148 SYEIGADRTASIE--TLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDTWVSAS 225 (419)
T ss_pred eEEECCCCCCCHH--HHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEEEEEeeC
Confidence 4555444443333 3666676666554311100 0 01233444444579999999999999999998864
Q ss_pred eccccEEEEEEEEEE--CCEEEEEEEEEEEe
Q 027147 197 QKRFGIAKMEGKAYV--GGEVVCEGEFLMAT 225 (227)
Q Consensus 197 ~~~~g~~~~~~~~~v--~G~vVa~g~l~l~i 225 (227)
.+.....+..++. +|+++++|+-+.++
T Consensus 226 --~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~ 254 (419)
T PLN02370 226 --GKNGMRRDWLVRDCKTGETLTRASSVWVM 254 (419)
T ss_pred --CCCEEEEEEEEEECCCCeEEEEEEEEEEE
Confidence 2234455677775 59999998877554
No 78
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=76.56 E-value=7 Score=31.58 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=34.1
Q ss_pred EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEE
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEV 215 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~v 215 (227)
.+.|..||.||+++++.++-...-...|+..|.+.++--|+.
T Consensus 92 ~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~~ 133 (146)
T PF10989_consen 92 TITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGDN 133 (146)
T ss_pred EEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCCC
Confidence 588999999999999998666533445899999999886665
No 79
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=74.45 E-value=17 Score=33.05 Aligned_cols=48 Identities=8% Similarity=0.134 Sum_probs=39.2
Q ss_pred EEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEe
Q 027147 176 RFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMAT 225 (227)
Q Consensus 176 kF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i 225 (227)
-|.+|..+-+.+.++|+..+ +.+.+..-++.++.+|++++.+...+.+
T Consensus 63 yFl~pgd~~~pi~y~Ve~lR--dG~sfs~rrV~aiQ~g~~If~~~ASF~~ 110 (289)
T COG1946 63 YFLRPGDPEQPIIYDVERLR--DGRSFSTRRVDAIQHGKLIFSATASFQV 110 (289)
T ss_pred hhcCCCCcCCceEEEEEecc--CCCceEeEEEEEEECCEEEEEEEeeccC
Confidence 57778877788999887775 5567888889999999999998887754
No 80
>smart00826 PKS_DH PKS_DH.
Probab=70.91 E-value=25 Score=26.84 Aligned_cols=56 Identities=14% Similarity=0.333 Sum_probs=36.2
Q ss_pred EeCC-CCCccCCCCC-CCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCC
Q 027147 120 NVTI-NDNFFPGHFP-ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGD 185 (227)
Q Consensus 120 ~Vt~-ne~fF~GHFp-~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD 185 (227)
.+.. +.+|+.+|-- +.+++||+..+|+...++..... . .. ..++++.|.+|+..++
T Consensus 21 ~~~~~~~~~l~~h~v~~~~~~P~~~~~~~~~~a~~~~~~-----~---~~--~~l~~~~~~~pl~~~~ 78 (167)
T smart00826 21 RLSLRTHPWLADHRVGGTVVLPGAAYVEMALAAADEVGC-----G---AA--VRLEELTLEAPLVLPE 78 (167)
T ss_pred EeCCCCCchhhcCEECCEEEecHHHHHHHHHHHHHHhCC-----C---CC--ceEeEEEeccccccCC
Confidence 3443 4678888844 66899999999977665432221 0 11 2468999999986543
No 81
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=68.80 E-value=20 Score=28.87 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=34.0
Q ss_pred EeeEEEE-EEccCccCCCEEEEEEEEEEEeccccEEEEEEEEE--ECCEEEEEEE
Q 027147 169 FAGIDKV-RFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY--VGGEVVCEGE 220 (227)
Q Consensus 169 L~gi~kv-kF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~--v~G~vVa~g~ 220 (227)
...++-. .|++|++.+|-|.++++-..... +....+|+.+ .+|++||+..
T Consensus 75 ~vSlDHs~wFHrpfr~ddWlLY~~~sp~A~~--~Rgl~~G~~f~~q~G~Lvas~~ 127 (131)
T PF02551_consen 75 QVSLDHSMWFHRPFRADDWLLYAIESPSASG--GRGLVRGRFFDTQDGELVASVV 127 (131)
T ss_dssp EEEEEEEEEE-S--BTTS-EEEEEEEEEEET--TEEEEEECCEEECTTEEEEEEE
T ss_pred EEecceeEEEcCCCCCCCCEEEEEEcCcccc--CcccccCceEecCCCCEEEEEe
Confidence 3367554 89999999999999888775434 4556778888 5999999743
No 82
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=68.74 E-value=88 Score=28.59 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=51.2
Q ss_pred CCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE
Q 027147 132 FPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV 211 (227)
Q Consensus 132 Fp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v 211 (227)
+|.++++-|.+ .+|+.++....-. ..+..-.=-.-|-+...|...+.+.|+.++ +.+.++.-.++++.
T Consensus 35 ~~~~~~fGG~i----~sQaLaAA~~TV~------e~f~p~SlH~YFI~~gd~~~pI~Y~V~rir--dGr~F~~R~V~AvQ 102 (294)
T KOG3016|consen 35 IPSNHAYGGQI----ASQALAAASKTVE------EMFIPHSLHCYFILVGDPNIPIIYDVKRIR--DGRNFATRSVDAVQ 102 (294)
T ss_pred ccCccccccee----hHHHHHHHHhccc------cccccceeeeeeeecCCCCCceEEEeeeec--CCceeEEEEEEEEE
Confidence 66677777755 5555444332111 112221113446566666667888776664 56678888899999
Q ss_pred CCEEEEEEEEEEE
Q 027147 212 GGEVVCEGEFLMA 224 (227)
Q Consensus 212 ~G~vVa~g~l~l~ 224 (227)
+|+++..+.+.+-
T Consensus 103 ~~k~If~~qiSF~ 115 (294)
T KOG3016|consen 103 KGKTIFTLQISFQ 115 (294)
T ss_pred CCeEEEEEEEEEc
Confidence 9999999988875
No 83
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=63.04 E-value=43 Score=25.13 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=40.9
Q ss_pred EEEeeEE-EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEEE
Q 027147 167 FFFAGID-KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEFL 222 (227)
Q Consensus 167 g~L~gi~-kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l~ 222 (227)
+....++ .+.|+.+....+-+.++++... ...|....+++++. +|++||...-.
T Consensus 46 ~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~--~~~gr~~~~~~l~~~~G~LvAs~~Q~ 101 (104)
T cd03444 46 SASASLDHAIWFHRPFRADDWLLYEQRSPR--AGNGRGLVEGRIFTRDGELVASVAQE 101 (104)
T ss_pred cceEeeeEEEEEeCCCCCCceEEEEEECcc--ccCCeeEEEEEEECCCCCEEEEEEEe
Confidence 3445554 5789999988888888887765 34577888999987 79999987654
No 84
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=61.65 E-value=45 Score=29.23 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=50.9
Q ss_pred EEEEEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEE
Q 027147 116 VAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVK 195 (227)
Q Consensus 116 ~a~k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~ 195 (227)
.....|...|.=+.||-- .+.-++++..+...-... ..-+..+ ++.|++.+..||+|.+...+..
T Consensus 167 ~~~~~vr~sDiD~N~HVN------N~~Yl~w~~d~lp~~~~~--------~~~~~~i-~I~y~~E~~~gd~i~~~~~~~~ 231 (261)
T PF01643_consen 167 EKEFTVRYSDIDMNGHVN------NARYLDWALDALPEEFLE--------KYQIKSI-DINYKKEIRYGDTITSYTEVEK 231 (261)
T ss_dssp CEEEE--GGGEETTTCE-------HHHHHHHHHCCS-HHHHC--------CEEEEEE-EEEE-S--BTT-EEEEEEEEEE
T ss_pred eecccccHHHCCCCCCcC------HHHHHHHHHHhCcchhhc--------cCCcEEE-EEEEccccCCCCEEEEEEEEcc
Confidence 344446555554688854 366677654443221111 1124444 6889999999999998877654
Q ss_pred EeccccEEEEEEEEEEC-CEEEEEEEEE
Q 027147 196 LQKRFGIAKMEGKAYVG-GEVVCEGEFL 222 (227)
Q Consensus 196 ~~~~~g~~~~~~~~~v~-G~vVa~g~l~ 222 (227)
.. ......+.-.+..+ |+.+|.++..
T Consensus 232 ~~-~~~~~~~~h~i~~~~g~~~~~~~~~ 258 (261)
T PF01643_consen 232 DE-EEDGLSTLHEIRNEDGEEVARARTE 258 (261)
T ss_dssp EC-CTTEEEEEEEEECT-TCEEEEEEEE
T ss_pred cc-cCCceEEEEEEEcCCCceEEEEEEE
Confidence 33 33444566677776 9999998865
No 85
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=57.53 E-value=36 Score=31.95 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=34.5
Q ss_pred eEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE
Q 027147 166 NFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV 211 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v 211 (227)
..++..++.++|.+||..|+.|++...+.......-.+.+++...+
T Consensus 241 ~p~~rsVD~i~F~~pVdvG~~L~f~s~V~yT~~k~~~vqv~~~~~v 286 (357)
T KOG2763|consen 241 RPATRSVDDIEFQKPVDVGCVLTFSSFVTYTDNKSIYVQVKAVASV 286 (357)
T ss_pred CceEEEechhhccCcceeeeEEEEeeEEEEecCCceeEEEEEeccc
Confidence 3478999999999999999999999988864332114555555544
No 86
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=56.70 E-value=26 Score=31.35 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=41.7
Q ss_pred CccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEc--cCccCCCEEEEEEEEEEEeccccEEEEEEEEEECC
Q 027147 136 PIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFR--KPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGG 213 (227)
Q Consensus 136 PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~--~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G 213 (227)
=|++|-+++-.|.-+.--+. + -.+++++|+ +|+++++++++...+.. .+++-. .+++-+|
T Consensus 202 LVvhGPl~atlll~~~~~~~-----p--------q~~~Rf~fR~L~p~f~~~~lti~~~l~~---~g~~~~--w~~~~~~ 263 (273)
T COG3777 202 LVVHGPLIATLLLRAFQPFL-----P--------QPIRRFRFRNLSPAFPNETLTICGSLSG---SGGAEL--WTIRGDG 263 (273)
T ss_pred ceecchHHHHHHHHHhhhhc-----c--------ccchheeccccccccCCCCeeEeeEecC---CCceEE--EEecCCc
Confidence 47888876655433311111 1 125777776 78899999999887764 333322 3444567
Q ss_pred EEEEEEEEE
Q 027147 214 EVVCEGEFL 222 (227)
Q Consensus 214 ~vVa~g~l~ 222 (227)
.++++|+..
T Consensus 264 pv~mrarV~ 272 (273)
T COG3777 264 PVAMRARVF 272 (273)
T ss_pred chhheeeec
Confidence 677777753
No 87
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=54.88 E-value=35 Score=31.07 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=38.1
Q ss_pred EEeeEE-EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEE
Q 027147 168 FFAGID-KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGE 220 (227)
Q Consensus 168 ~L~gi~-kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~ 220 (227)
..++++ -+.|++|++-+|-|.+.++.-..++ +...++++++. +|+++|...
T Consensus 225 ~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~--~rgl~~G~lf~r~G~LiA~~~ 277 (289)
T COG1946 225 QVASLDHSMWFHRPFRLDDWLLYAQESPSASG--GRGLVRGQLFDRDGQLIASVV 277 (289)
T ss_pred eEeeccceEEEeccccCCCEEEEEeeCCcccC--CcceeeeEEEcCCCCEEEEEe
Confidence 444553 4679999999999999888876544 44566788876 899998644
No 88
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=49.54 E-value=68 Score=27.86 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=40.1
Q ss_pred EeeE-EEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEEEE
Q 027147 169 FAGI-DKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEFLM 223 (227)
Q Consensus 169 L~gi-~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l~l 223 (227)
...+ -.+.|++++..++-+.++++.... ..|....+++++. +|++||+..-.-
T Consensus 214 ~aSldhtv~fh~~~~~~~W~l~~~~s~~~--~~Grg~~~~~l~d~~G~lvAs~~Qe~ 268 (271)
T TIGR00189 214 AASLDHSIWFHRPFRADDWLLYKCSSPSA--SGSRGLVEGKIFTRDGVLIASTVQEG 268 (271)
T ss_pred EEeeeeeEEEeCCCCCCeeEEEEEEeccc--cCCceEEEEEEECCCCCEEEEEEeee
Confidence 3444 357799998889999998877753 4567788899986 899999876543
No 89
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=49.17 E-value=24 Score=26.30 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHHHHHhcccc-cCCCcceEEEeeEEEEEEccCccCCCEEEEE
Q 027147 139 PGVLMVEAMAQVGGLVMLQPE-VGGSRENFFFAGIDKVRFRKPVIAGDTLVMR 190 (227)
Q Consensus 139 PGvLlIE~mAQaaa~l~~~~~-~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~ 190 (227)
.|+-+.|++.+++-+-. ..+ .......|.++ +.++....+..||+|++-
T Consensus 22 ~GtTv~~Ai~~Sgi~~~-~p~idl~~~~vGIfG--k~~~~d~~L~~GDRVEIY 71 (84)
T PF03658_consen 22 EGTTVAQAIEASGILEQ-FPEIDLEKNKVGIFG--KLVKLDTVLRDGDRVEIY 71 (84)
T ss_dssp TT-BHHHHHHHHTHHHH--TT--TTTSEEEEEE---S--TT-B--TT-EEEEE
T ss_pred CcCcHHHHHHHcCchhh-CcccCcccceeeeee--eEcCCCCcCCCCCEEEEe
Confidence 46778888877654332 222 12234677777 667788889999999874
No 90
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=48.53 E-value=1.6e+02 Score=24.95 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=38.5
Q ss_pred EEEeeEE-EEEE-ccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEEEEEe
Q 027147 167 FFFAGID-KVRF-RKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEFLMAT 225 (227)
Q Consensus 167 g~L~gi~-kvkF-~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l~l~i 225 (227)
.+...++ .+.| +.|...++-|.++.+.... ..|....+++++. +|++||.+.-..++
T Consensus 196 ~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~--~~Gr~~~~~~l~d~~G~lvA~~~Q~~lv 255 (255)
T PF13622_consen 196 WFPATLDHTIHFHRLPFDGDEWLLLEARSPRA--GNGRALMEGRLWDEDGRLVASSRQEALV 255 (255)
T ss_dssp B-EEEEEEEEEECSHCCTTTS-EEEEEEEEEE--ETTEEEEEEEEEETTS-EEEEEEEEEE-
T ss_pred cccccceeEEEEEeCCccCCceEEEEEEEeEe--CCCEEEEEEEEECCCCCEEEEEEEEeeC
Confidence 3443443 5776 4555568889888877754 4588899999998 89999998876653
No 91
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=43.96 E-value=82 Score=28.10 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=41.0
Q ss_pred EEeeEE-EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEEEEE
Q 027147 168 FFAGID-KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEFLMA 224 (227)
Q Consensus 168 ~L~gi~-kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l~l~ 224 (227)
....++ .+.|+.++.++|-+.++++.... ..|....++.++. +|++||++.-.-+
T Consensus 225 ~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a--~~gr~~~~g~i~~~~G~LvAs~~Qegl 281 (286)
T PRK10526 225 QIATIDHSMWFHRPFNLNEWLLYSVESTSA--SSARGFVRGEFYTQDGVLVASTVQEGV 281 (286)
T ss_pred eEEeeeEeEEEeCCCCCCceEEEEEECCcc--cCCceEEEEEEECCCCCEEEEEEeeEE
Confidence 344554 46899999999999998877643 4466777888885 8999998765533
No 92
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=42.13 E-value=61 Score=28.84 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEccCccCCCEEEEEEEEEE
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVK 195 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~ 195 (227)
++++.++|.||++|++..++..
T Consensus 197 ~l~y~keva~G~~iti~~e~~~ 218 (250)
T COG3884 197 TLEYVKEVAPGEKITIVYEVHP 218 (250)
T ss_pred EEEEEcccCCCCeEEEEEEEcc
Confidence 6889999999999999988875
No 93
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=36.84 E-value=56 Score=23.33 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=23.8
Q ss_pred eEEEEEEcc--CccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEE
Q 027147 171 GIDKVRFRK--PVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLM 223 (227)
Q Consensus 171 gi~kvkF~~--pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l 223 (227)
|-.++..+. -..+||.|.+...... ...++++|+.++.|++..
T Consensus 17 g~~~itl~ell~L~~Gdvi~L~~~~~~----------~v~l~v~g~~~~~g~lg~ 61 (77)
T TIGR02480 17 GRTRITLGDLLKLGEGSVIELDKLAGE----------PLDILVNGRLIARGEVVV 61 (77)
T ss_pred eceEeEHHHHhcCCCCCEEEcCCCCCC----------cEEEEECCEEEEEEEEEE
Confidence 333454443 3468999987532221 245566666666666543
No 94
>PLN02868 acyl-CoA thioesterase family protein
Probab=35.53 E-value=80 Score=29.56 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=37.5
Q ss_pred EEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE-CCEEEEEEEE
Q 027147 173 DKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV-GGEVVCEGEF 221 (227)
Q Consensus 173 ~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v-~G~vVa~g~l 221 (227)
-.+.|+.++..+|-+.++++.... ..|....+++++. +|++||+..-
T Consensus 362 hsi~Fh~~~~~d~W~l~~~~s~~a--~~gr~~~~g~l~~~~G~LvAs~~Q 409 (413)
T PLN02868 362 HSMWFHRPFRADDWLLFVIVSPAA--HNGRGFATGHMFNRKGELVVSLTQ 409 (413)
T ss_pred eeEEEecCCCCCceEEEEEECCcc--CCCcceEEEEEECCCCCEEEEEEe
Confidence 357899999999999888877653 4467778899986 8999998754
No 95
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=30.50 E-value=50 Score=23.18 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=17.5
Q ss_pred CccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEE
Q 027147 180 PVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFL 222 (227)
Q Consensus 180 pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~ 222 (227)
-..+||.|.+.....+ ...++++|+.++.|++.
T Consensus 28 ~L~~Gdvi~l~~~~~~----------~v~l~v~g~~~~~g~lg 60 (77)
T PF01052_consen 28 NLKVGDVIPLDKPADE----------PVELRVNGQPIFRGELG 60 (77)
T ss_dssp C--TT-EEEECCESST----------EEEEEETTEEEEEEEEE
T ss_pred cCCCCCEEEeCCCCCC----------CEEEEECCEEEEEEEEE
Confidence 3468999988654221 13445566666666654
No 96
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=28.29 E-value=4.1e+02 Score=23.28 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=41.9
Q ss_pred ceEEEeeEEEEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEec
Q 027147 165 ENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMATG 226 (227)
Q Consensus 165 ~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i~ 226 (227)
+..++-..=.+.|.+.-...-.|++.-...+..+++|-+.+++.++.+|++|-+|.=++.++
T Consensus 148 RPLViYESMs~~l~~Ld~~~~~l~l~~~~l~v~GKRG~v~L~F~l~~~g~~VG~G~K~lvlS 209 (218)
T PF12119_consen 148 RPLVIYESMSFELDRLDFTSPELELAGATLEVDGKRGDVTLNFELKEGGEVVGTGSKRLVLS 209 (218)
T ss_pred CceEEeEeeEEEecccCCCCCeeEeccceeEeecceeeEEEEEEEeECCEEEeeEEEEEEEc
Confidence 34445544467776655444445443333334567788999999999999999998887764
No 97
>PRK06789 flagellar motor switch protein; Validated
Probab=26.60 E-value=1.2e+02 Score=22.07 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=25.0
Q ss_pred cCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEE
Q 027147 179 KPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 224 (227)
Q Consensus 179 ~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~ 224 (227)
-...+|+.+.++-... . ...+++||+.+++|++...
T Consensus 26 l~L~~Gsvi~Ldk~~~------e----pvdI~vNg~lia~GEvVvv 61 (74)
T PRK06789 26 LHITKGTLYRLENSTK------N----TVRLMLENEEIGTGKILTK 61 (74)
T ss_pred hcCCCCCEEEeCCcCC------C----CEEEEECCEEEeEEeEEEE
Confidence 3446899887632111 1 2678899999999998764
No 98
>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]
Probab=24.92 E-value=1.5e+02 Score=23.44 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=19.0
Q ss_pred ccCCCEEEEEEEEEEEeccccEEEEEEEE
Q 027147 181 VIAGDTLVMRMTLVKLQKRFGIAKMEGKA 209 (227)
Q Consensus 181 V~PGD~L~i~v~i~~~~~~~g~~~~~~~~ 209 (227)
..|||+|.+.+++.+- ++..+-.|+|.+
T Consensus 21 f~~GDtvrv~vki~Eg-~keR~Q~FeGvV 48 (115)
T COG0335 21 FRPGDTVRVHVKIVEG-SKERVQAFEGVV 48 (115)
T ss_pred CCCCCEEEEEEEEEeC-CeEEEeeeeEEE
Confidence 4599999999999872 333344566654
No 99
>PF08865 DUF1830: Domain of unknown function (DUF1830); InterPro: IPR014964 This group of short proteins is functionally uncharacterised.
Probab=24.61 E-value=58 Score=23.29 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=21.8
Q ss_pred eEEEeeEEEEEEccCccCCCEEEEEEE
Q 027147 166 NFFFAGIDKVRFRKPVIAGDTLVMRMT 192 (227)
Q Consensus 166 ~g~L~gi~kvkF~~pV~PGD~L~i~v~ 192 (227)
...+.++.++-|-+.|.||+++..++-
T Consensus 12 I~Ri~~~~~~y~ERVVFP~e~l~FeAp 38 (68)
T PF08865_consen 12 ILRIINIPNWYFERVVFPGERLLFEAP 38 (68)
T ss_pred EEEEeCCCCceEEEEEcCCcEEEEEcC
Confidence 445667778889999999999988763
No 100
>PLN02370 acyl-ACP thioesterase
Probab=24.20 E-value=6.4e+02 Score=24.17 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=50.2
Q ss_pred EEeCCCCCccCCCCCCCCccChhHHHHHHHHHHHHHhcccccCCCcceEEEeeEEEEEEccCccCCCEEEEEEEEEEE--
Q 027147 119 KNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKL-- 196 (227)
Q Consensus 119 k~Vt~ne~fF~GHFp~~PImPGvLlIE~mAQaaa~l~~~~~~~~~~~~g~L~gi~kvkF~~pV~PGD~L~i~v~i~~~-- 196 (227)
..|...|.=..||.-+ +..++++..+.-.-... .-.+..+ +++|++-+..||.|+........
T Consensus 306 ~~VRysDLD~NgHVNN------vkYi~Wild~lP~e~l~--------~~~l~~i-~I~Y~kE~~~gd~V~s~~~~~~~~~ 370 (419)
T PLN02370 306 LTPRWSDLDVNQHVNN------VKYIGWILESAPPPIME--------SHELAAI-TLEYRRECGRDSVLQSLTAVSGTGI 370 (419)
T ss_pred eeecHHHCcccCcccc------HHHHHHHHhhCchhhhh--------cceEEEE-EEEEcccCCCCCEEEEEEeeccccc
Confidence 3454443334788654 77777765543211111 1124455 68999999999999876653210
Q ss_pred --eccccEEEEEEEE-EECCEEEEEEEEEEE
Q 027147 197 --QKRFGIAKMEGKA-YVGGEVVCEGEFLMA 224 (227)
Q Consensus 197 --~~~~g~~~~~~~~-~v~G~vVa~g~l~l~ 224 (227)
....+-..+.... ..+|+.+|.++..-.
T Consensus 371 ~~~~~~~~~~~~h~~~~~dG~e~a~a~t~Wr 401 (419)
T PLN02370 371 GNLGTAGDVECQHLLRLEDGAEIVRGRTEWR 401 (419)
T ss_pred ccccCCCcceEEEEEEcCCCeEEEEEEEEEE
Confidence 0011211122222 358999999987643
No 101
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=23.17 E-value=2.2e+02 Score=21.83 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=29.3
Q ss_pred EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEE
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLM 223 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l 223 (227)
...|..++.-|+.|...--.-+....-.-+.|+|++-.+...|.+.++.+
T Consensus 36 ~~~~~~~~~~g~~l~a~gaAFRs~g~WY~l~F~C~vd~d~~~V~sF~~~v 85 (101)
T PF06059_consen 36 SYAFSDPKISGNVLDAPGAAFRSRGKWYDLSFRCEVDPDATKVTSFSFKV 85 (101)
T ss_pred ccccCCccccCCEEecCCcEEecCCeEEEEEEEEEECCCceEEEEEeecc
Confidence 34577888888888775323322222233456676666677776655543
No 102
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=22.88 E-value=3.1e+02 Score=20.07 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=25.5
Q ss_pred EEEEccCccCCCEEEEEEEEEEEe-ccccEEEEEEEEEECCEEEEEEEE
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVKLQ-KRFGIAKMEGKAYVGGEVVCEGEF 221 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~~~-~~~g~~~~~~~~~v~G~vVa~g~l 221 (227)
+++|...-.-+.++.+.+++..-. -...+..++.+++.+|..+++|+.
T Consensus 4 ~~~~~~~~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~ 52 (100)
T smart00769 4 DVEWGPVSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEI 52 (100)
T ss_pred eeEeccccceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEc
Confidence 344433333344555555554321 122344466677788888888775
No 103
>PF12969 DUF3857: Domain of Unknown Function with PDB structure (DUF3857); InterPro: IPR024618 This domain is based on the first domain of the PDB structure 3KD4 (residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase, despite lack of any significant sequence similarity. The domain is N-terminal to a transglutaminase domain, which is found in many proteins known to have transglutaminase activity. The function of this domain is unknown. ; PDB: 3KD4_A.
Probab=20.87 E-value=3.3e+02 Score=21.47 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=21.0
Q ss_pred cCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEEe
Q 027147 179 KPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMAT 225 (227)
Q Consensus 179 ~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~i 225 (227)
..|.+||.|.+..++........-.......+..+..+...++++.+
T Consensus 88 p~v~~GdiIe~~y~~~~~~p~~~~~~~~~~~f~~~~pv~~~~~~v~~ 134 (177)
T PF12969_consen 88 PDVRVGDIIEYSYTIKSKNPYFPGYFSDSFYFQSSIPVRRSRFTVIV 134 (177)
T ss_dssp -S--TT-EEEEEEEEEE-TTS-SS-EEEEE---SS--EEEEEEEEEE
T ss_pred CCCCCCcEEEEEEEEEecCCccCCccccEEEeccCCceeeEEEEEEe
Confidence 45679999999888875321111112233334455677777776654
No 104
>PRK08158 type III secretion system protein SpaO; Validated
Probab=20.84 E-value=1.1e+02 Score=28.12 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=30.3
Q ss_pred EEeeEEEEEEc--cCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEE
Q 027147 168 FFAGIDKVRFR--KPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 224 (227)
Q Consensus 168 ~L~gi~kvkF~--~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~ 224 (227)
+-.|-.++... .-..||+.+.+.-... -.+.+++||+++++|+++..
T Consensus 236 ~~lGr~~~tl~eL~~L~~GsVl~L~~~~~----------~~V~I~vNg~lva~GELV~v 284 (303)
T PRK08158 236 FVLYRKNVTLAELEELCQQQLLSLPTNAE----------LNVEIRANGALLGNGELVQM 284 (303)
T ss_pred EEEeceeeeHHHHhhcCCCCEEECCCCCC----------CceEEEECCEEEEEEEEEEE
Confidence 34444455543 3345898887653222 13778999999999999865
No 105
>PRK08916 flagellar motor switch protein; Reviewed
Probab=20.53 E-value=1.4e+02 Score=23.53 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=26.0
Q ss_pred EEeeEEEEEEccC--ccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEE
Q 027147 168 FFAGIDKVRFRKP--VIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLM 223 (227)
Q Consensus 168 ~L~gi~kvkF~~p--V~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l 223 (227)
+..|-.++..+.. ..+||.|.+.-...+ ...+++||+.+++|++..
T Consensus 51 v~LG~~~ltl~ELL~L~~GDVI~Ld~~~~e----------~V~I~Vng~~~~~Gelg~ 98 (116)
T PRK08916 51 AVLGRSKMDVGQLLKLGPGSVLELDRKVGE----------AIDIYVNNRLVARGEVVL 98 (116)
T ss_pred EEEecccccHHHHhcCCCCCEEEcCCCCCC----------CEEEEECCEEEEEEEEEE
Confidence 3444445554433 458999988532221 145667777777776654
No 106
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=20.36 E-value=3.5e+02 Score=20.40 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=27.0
Q ss_pred EEEccCccCCCEEEEEEEEEEEe-----ccc------cEEEEEEEEEECCEEEEEEEEEEEe
Q 027147 175 VRFRKPVIAGDTLVMRMTLVKLQ-----KRF------GIAKMEGKAYVGGEVVCEGEFLMAT 225 (227)
Q Consensus 175 vkF~~pV~PGD~L~i~v~i~~~~-----~~~------g~~~~~~~~~v~G~vVa~g~l~l~i 225 (227)
+|..+....|+.+++++-+..-. .+. ....=+.+++.||+.|+++++...+
T Consensus 3 ir~p~~~~~g~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~v~v~~ng~~v~~~~~~~si 64 (100)
T PF08770_consen 3 IRVPKAAKKGGVVEVKALISHPMETGLRKDQTGKYIPAHFIEEVEVTYNGKPVFRADWGPSI 64 (100)
T ss_dssp EE-SSCEETTEEEEEEEEE----B-S-BB-TTS-BB--B-EEEEEEEETTEEEEEEEE-TTB
T ss_pred eeccccccCCCcEEEEEEEECCCccccccCCCCCCCChHheEEEEEEECCEEEEEEEeCCcc
Confidence 44445566777777777655321 100 0112245566799999998876544
No 107
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.34 E-value=1.5e+02 Score=23.62 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=24.8
Q ss_pred CccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEE
Q 027147 180 PVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 224 (227)
Q Consensus 180 pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~ 224 (227)
...+|+.|.+. +... -.+.+.+||+++++|+++..
T Consensus 91 ~l~~Gsvi~Ld-~~~~---------~~VdI~vNg~~Ig~GEvVvv 125 (136)
T COG1886 91 ALGKGSVIELD-KLAG---------EPVDILVNGRLIGRGEVVVV 125 (136)
T ss_pred hcCCCCEEEcC-CcCC---------CceEEEECCEEEEEEeEEEE
Confidence 34578888765 2221 13788999999999999875
No 108
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.26 E-value=4e+02 Score=23.03 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=38.9
Q ss_pred EEEEccCccCCCEEEEEEEEEEEeccccEEEEEEEEEE---CCEEEEEEEEEEEe
Q 027147 174 KVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYV---GGEVVCEGEFLMAT 225 (227)
Q Consensus 174 kvkF~~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v---~G~vVa~g~l~l~i 225 (227)
++.|..+-+-|++|.+...+... .....+.++.++.. +|+.+.+-+++++-
T Consensus 101 dV~l~~~~y~~~~L~l~~~ltnq-SsqsVv~Vel~v~l~d~~G~~L~~e~v~vWq 154 (199)
T PF11355_consen 101 DVSLGASQYEDGQLGLPFSLTNQ-SSQSVVLVELEVTLFDDSGQLLKTETVKVWQ 154 (199)
T ss_pred eEEEeccceeCCeEEEEEEEecC-CCceEEEEEEEEEEEcCCCCEeeEeeeehhh
Confidence 57788888889999999999864 44566666666655 79999888887653
No 109
>PRK06033 hypothetical protein; Validated
Probab=20.17 E-value=1.7e+02 Score=21.42 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=17.1
Q ss_pred ccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEE
Q 027147 181 VIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFL 222 (227)
Q Consensus 181 V~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~ 222 (227)
..+||.|.+.....+ ...++++|+..++|++.
T Consensus 28 L~~GDVI~L~~~~~~----------~v~v~V~~~~~f~g~~G 59 (83)
T PRK06033 28 MGRGAVIPLDATEAD----------EVWILANNHPIARGEVL 59 (83)
T ss_pred CCCCCEEEeCCCCCC----------cEEEEECCEEEEEEEEE
Confidence 358999887542211 13445555555555543
No 110
>PRK08035 type III secretion system protein SsaQ; Validated
Probab=20.04 E-value=1.3e+02 Score=27.83 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=24.7
Q ss_pred cCccCCCEEEEEEEEEEEeccccEEEEEEEEEECCEEEEEEEEEEE
Q 027147 179 KPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGGEVVCEGEFLMA 224 (227)
Q Consensus 179 ~pV~PGD~L~i~v~i~~~~~~~g~~~~~~~~~v~G~vVa~g~l~l~ 224 (227)
.-..||+.|.+.-... + .+.+++||+.+++|++...
T Consensus 270 ~~L~~GsVl~L~~~~~------~----~VdI~vNG~~ia~GElV~v 305 (323)
T PRK08035 270 RQLAVGDVLPVGGCFY------P----EVTIRLNGRIIGQGELLAC 305 (323)
T ss_pred hcCCCCCEEEcCCCCC------C----ceEEEECCEEEEEEEEEEE
Confidence 3446888887653111 1 2677899999999998764
Done!