Query 027148
Match_columns 227
No_of_seqs 41 out of 43
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 08:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3egr_A Phenylacetate-COA oxyge 65.6 9.8 0.00034 29.4 5.0 39 71-109 2-40 (96)
2 3g5s_A Methylenetetrahydrofola 65.4 6.9 0.00024 37.2 4.9 55 76-164 255-311 (443)
3 2fcg_F Cationic, antibacterial 60.4 3.9 0.00013 25.2 1.5 17 183-199 3-19 (26)
4 1h2c_A Matrix protein VP40; vi 49.1 5.2 0.00018 32.5 1.0 26 84-109 34-65 (140)
5 2hc5_A ORF 99, hypothetical pr 45.4 39 0.0013 26.3 5.5 58 134-198 36-103 (117)
6 2kkc_A Sequestosome-1; P62, PB 43.8 16 0.00054 28.1 2.9 47 136-193 45-91 (102)
7 2ktr_A Sequestosome-1; autopha 40.4 19 0.00064 28.5 2.9 47 136-193 60-106 (117)
8 2k6o_A Cathelicidin antimicrob 36.8 13 0.00045 24.5 1.2 16 184-199 16-31 (37)
9 1eze_A Cholesteryl ester trans 30.4 25 0.00087 23.1 1.8 17 186-202 16-32 (38)
10 3tcq_A Matrix protein VP40; se 30.4 10 0.00034 34.5 -0.2 32 85-116 89-127 (326)
No 1
>3egr_A Phenylacetate-COA oxygenase subunit PAAB; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; 2.65A {Ralstonia eutropha JMP134}
Probab=65.58 E-value=9.8 Score=29.43 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=28.9
Q ss_pred CCCCCCceEEEEEEecCCcceeeceeeccCchHHHHHHH
Q 027148 71 IEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAA 109 (227)
Q Consensus 71 i~~dGnp~FvIFVR~kg~~~WyPlgvvaGg~~Ak~lV~a 109 (227)
|...+-|.|++|||.+....--=||+|--.+..-+|..|
T Consensus 2 m~~~~~~~wEVFvr~~~g~~h~HvGSvhApd~e~Al~~A 40 (96)
T 3egr_A 2 MTQKEWPLWEVFVRSKQGLEHKHCGSLHATDAQQALHMA 40 (96)
T ss_dssp --CCCCCEEEEEEECTTCSSCEEEEEEECSSHHHHHHHH
T ss_pred CCCCCCccEEEEEeCCCCCCceeeecccCCCHHHHHHHH
Confidence 445567999999999988888889999877775344333
No 2
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=65.40 E-value=6.9 Score=37.21 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=45.7
Q ss_pred CceEEEEEEecCCc--ceeeceeeccCchHHHHHHHhhcchhhhhhHHHHHHHHHHHHhhcHHHHHHHHHHhchhhhccc
Q 027148 76 NPRFVIFIRMANVY--LWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSAT 153 (227)
Q Consensus 76 np~FvIFVR~kg~~--~WyPlgvvaGg~~Ak~lV~a~dn~lgk~iyk~tL~~nIa~aIYkdee~L~k~a~R~yP~Lk~~~ 153 (227)
.|-=+||+|.-|.. .|||.|+=|. =..++++.++|+.|-|..+.
T Consensus 255 ~p~a~v~LepE~~~~~~~y~~GfsTs----------------------------------Lp~~~Q~~~~r~IpGLE~a~ 300 (443)
T 3g5s_A 255 EPFAVVQLRQEDKAGRMWSLVGFQTG----------------------------------LKWPEQKRLIQMIPGLENAE 300 (443)
T ss_dssp CCSEEEEEEECSTTSCEEEETTCCCC----------------------------------BCHHHHHHHHTTSTTCTTCC
T ss_pred ccceEEEEeecCCCCCEEeCCceecC----------------------------------CCHHHHHHHHhcCcChhhCe
Confidence 45569999999776 9999987543 23567889999999999999
Q ss_pred ceeeeeEEeec
Q 027148 154 EFRYGYKLVEN 164 (227)
Q Consensus 154 efEYGYKl~dk 164 (227)
-++|||.+++.
T Consensus 301 ~~r~G~~~ey~ 311 (443)
T 3g5s_A 301 IVRYGVMHRNT 311 (443)
T ss_dssp EEECCEEEEEE
T ss_pred eeeCcEeecCc
Confidence 99999999765
No 3
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=60.40 E-value=3.9 Score=25.20 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=13.9
Q ss_pred CcchhhHHHHHhHHHHH
Q 027148 183 DKLKTVLDKVKDFFGDA 199 (227)
Q Consensus 183 eelkt~~dkVkdff~~~ 199 (227)
++++.+..++||||+++
T Consensus 3 ~~~kkIgQkIkdFf~~l 19 (26)
T 2fcg_F 3 KEFKRIVQRIKDFLRNL 19 (26)
T ss_dssp CSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46788899999998764
No 4
>1h2c_A Matrix protein VP40; virus/viral protein, filovirus, ebola virus, matrix protein VP40, assembly, budding; 1.6A {Ebola virus} SCOP: b.31.1.1
Probab=49.10 E-value=5.2 Score=32.51 Aligned_cols=26 Identities=38% Similarity=0.669 Sum_probs=19.4
Q ss_pred EecCCcceeeceeeccC------chHHHHHHH
Q 027148 84 RMANVYLWYPLSIITGG------TTAKIMVAA 109 (227)
Q Consensus 84 R~kg~~~WyPlgvvaGg------~~Ak~lV~a 109 (227)
-+|+.+.|+|||++.-. ++|.+|.++
T Consensus 34 ~~K~iP~WLPLGi~~~~~Y~~~~T~AAi~~~S 65 (140)
T 1h2c_A 34 LMKQIPIWLPLGVADQKTYSFDSTTAAIMLAS 65 (140)
T ss_dssp EEEEEEEEEEEEEECSSSSCHHHHHHHHHHSC
T ss_pred hhccCceeeecccccccccchHHHHHHHHhcc
Confidence 35789999999999765 456666555
No 5
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=45.38 E-value=39 Score=26.32 Aligned_cols=58 Identities=16% Similarity=0.347 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHhchhhhc-ccceeeee---------EEeecCccccccCCCCeeecCCCCcchhhHHHHHhHHHH
Q 027148 134 DEKEIQKTAFKQFRVLQS-ATEFRYGY---------KLVENGNLRAALSTSDVIELPTPDKLKTVLDKVKDFFGD 198 (227)
Q Consensus 134 dee~L~k~a~R~yP~Lk~-~~efEYGY---------Kl~dk~np~s~l~~~dvi~iP~~eelkt~~dkVkdff~~ 198 (227)
++++|++++-+.--.+.. ...|+|.+ +++|.. +.+||-=-|++++-..+.++.++.|-
T Consensus 36 ~~eel~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~-------TgEVIRqIPpEe~L~l~~~l~e~~Gl 103 (117)
T 2hc5_A 36 SYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDS-------TNEVIREIPPKRWLDFYAAMTEFLGL 103 (117)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETT-------TTEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECC-------CCcEEEeCChHHHHHHHHHHHHhhce
Confidence 467787777766666665 67777775 566664 66775433444665566666666554
No 6
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=43.77 E-value=16 Score=28.10 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=36.9
Q ss_pred HHHHHHHHHhchhhhcccceeeeeEEeecCccccccCCCCeeecCCCCcchhhHHHHH
Q 027148 136 KEIQKTAFKQFRVLQSATEFRYGYKLVENGNLRAALSTSDVIELPTPDKLKTVLDKVK 193 (227)
Q Consensus 136 e~L~k~a~R~yP~Lk~~~efEYGYKl~dk~np~s~l~~~dvi~iP~~eelkt~~dkVk 193 (227)
+.|...+.+.||.|+ ..+|...|+ |. -.|.|.|-..+||.-.+..++
T Consensus 45 ~~L~~~V~~lFp~l~-~~~f~l~Y~--De--------dGDlItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 45 ERLLSRVAVLFPALR-PGGFQAHYR--AE--------RGDLVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp HHHHHHHHHHCTTSC-SSCEEEEEE--CT--------TCCEEEECSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccccC-CCcEEEEEE--CC--------CCCEEEecCHHHHHHHHHhcC
Confidence 788999999999999 556888777 43 468999999999876665544
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=40.44 E-value=19 Score=28.53 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=36.9
Q ss_pred HHHHHHHHHhchhhhcccceeeeeEEeecCccccccCCCCeeecCCCCcchhhHHHHH
Q 027148 136 KEIQKTAFKQFRVLQSATEFRYGYKLVENGNLRAALSTSDVIELPTPDKLKTVLDKVK 193 (227)
Q Consensus 136 e~L~k~a~R~yP~Lk~~~efEYGYKl~dk~np~s~l~~~dvi~iP~~eelkt~~dkVk 193 (227)
+.|...+.+.||.|+ ..+|...|+ |. -.|.|.|-..+||.-.+..++
T Consensus 60 ~~L~~kV~~lFp~L~-~~~f~l~Yk--DE--------dGDlItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 60 ERLLSRVAVLFPALR-PGGFQAHYR--AE--------RGDLVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp HHHHHHHHHHCTTSC-SSCEEEEEE--CT--------TCCEEEECSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccccC-CCcEEEEEE--CC--------CCCEEEecCHHHHHHHHHhcC
Confidence 678999999999999 556888777 44 468999999999876665544
No 8
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=36.81 E-value=13 Score=24.53 Aligned_cols=16 Identities=25% Similarity=0.723 Sum_probs=12.9
Q ss_pred cchhhHHHHHhHHHHH
Q 027148 184 KLKTVLDKVKDFFGDA 199 (227)
Q Consensus 184 elkt~~dkVkdff~~~ 199 (227)
+++.+..++||||+++
T Consensus 16 ~~kkIgQkIKdFf~~l 31 (37)
T 2k6o_A 16 EFKRIVQRIKDFLRNL 31 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4677888999999875
No 9
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=30.44 E-value=25 Score=23.06 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=10.8
Q ss_pred hhhHHHHHhHHHHHHHh
Q 027148 186 KTVLDKVKDFFGDAKES 202 (227)
Q Consensus 186 kt~~dkVkdff~~~k~~ 202 (227)
.++.+|.|++|..+++|
T Consensus 16 ~tl~eK~k~~~~~i~~S 32 (38)
T 1eze_A 16 NTLEDKAWEVINRIKQS 32 (38)
T ss_dssp THHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 46666666666666654
No 10
>3tcq_A Matrix protein VP40; seattle structural genomics centers for infectious disease, sebov, seattle structural genomics center for infect disease; 1.60A {Sudan ebolavirus} PDB: 1es6_A 1h2d_A
Probab=30.42 E-value=10 Score=34.52 Aligned_cols=32 Identities=41% Similarity=0.642 Sum_probs=22.9
Q ss_pred ecCCcceeeceeeccC------chHHHHHHHh-hcchhh
Q 027148 85 MANVYLWYPLSIITGG------TTAKIMVAAK-DNFLGK 116 (227)
Q Consensus 85 ~kg~~~WyPlgvvaGg------~~Ak~lV~a~-dn~lgk 116 (227)
.|+.+.|+|||+..-. ++|.+|.+++ ..-||+
T Consensus 89 mK~iPiWLPLGva~q~~YsfdsTtAAimlaSYTIThFg~ 127 (326)
T 3tcq_A 89 MKQIPIWLPLGIADQKTYSFDSTTAAIMLASYTITHFGK 127 (326)
T ss_dssp EEEEEEEEEEEEECSSSSCHHHHHHHHHSSEEEEEEECC
T ss_pred hhcCceeeeccccccceecchhHHHHHhhhheeeeeccc
Confidence 4588899999998665 5677777764 444443
Done!