BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027150
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AMH|A Chain A, Crystal Structure Of Maf-Like Protein Tbru21784aaa From
T.Brucei
Length = 207
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 108/201 (53%), Gaps = 15/201 (7%)
Query: 34 IILGSSSMPRRKILAEMGYE----FSVMAADIDEKSIRKEKPEDLVMAIAEAKAEAILNR 89
+I+G+SS R +L E + F ++ DIDEK+ R P +L +IA AK +A+L +
Sbjct: 12 MIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKMKAVLEK 71
Query: 90 L-----PIGDYIKEAEPTILITGDQVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSS 144
PI + P I +T DQVVV +REKP S E+ R FI YSGG TV++
Sbjct: 72 ARQHSPPI------SGPAIALTFDQVVVKGDEVREKPLSTEQCRSFIASYSGGGVRTVAT 125
Query: 145 VLVTNLKTGFRKGEWDRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQV 204
+ + T + E F + D+++E+ +E G +N AGGL++E + +V ++
Sbjct: 126 YALCVVGTENVLVAHNETETFFSKFGDDIVERTLERGACMNSAGGLVVEDEDMSRHVVRI 185
Query: 205 VGAMDSVMGLPKAVTEKLIKE 225
VG V G+ AV EKL+ +
Sbjct: 186 VGTSYGVRGMEPAVVEKLLSQ 206
>pdb|1EX2|A Chain A, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EX2|B Chain B, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EXC|A Chain A, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
pdb|1EXC|B Chain B, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
Length = 189
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 98/194 (50%), Gaps = 16/194 (8%)
Query: 34 IILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKEKPEDLVMAIAEAKAEAILNRLPIG 93
+IL S S R+++L + +S++ ++++EK R PE+ V +A+ KA+A+ + P
Sbjct: 5 LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKAVADLHP-- 62
Query: 94 DYIKEAEPTILITGDQVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVT--NLK 151
I+I D +V +G KP +EEA ++ SG + +++V + N
Sbjct: 63 -------HAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAENHS 115
Query: 152 TGFRKGEWDRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQVVGAMDSV 211
F +D+ E+ F + +E I IE ++ AG I+ L +VK++ G SV
Sbjct: 116 ETF----YDKTEVAFWSLSEEEIWTYIETKEPMDKAGAYGIQGRGAL-FVKKIDGDYYSV 170
Query: 212 MGLPKAVTEKLIKE 225
MGLP + T + ++
Sbjct: 171 MGLPISKTMRALRH 184
>pdb|4HEB|A Chain A, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
pdb|4HEB|B Chain B, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
Length = 210
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 98/194 (50%), Gaps = 16/194 (8%)
Query: 34 IILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKEKPEDLVMAIAEAKAEAILNRLPIG 93
+IL S S R+++L + +S++ ++++EK R PE+ V +A+ KA+A+ + P
Sbjct: 26 LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKAVADLHP-- 83
Query: 94 DYIKEAEPTILITGDQVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVT--NLK 151
I+I D +V +G KP +EEA ++ SG + +++V + N
Sbjct: 84 -------HAIVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVITAVSIQAENHS 136
Query: 152 TGFRKGEWDRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQVVGAMDSV 211
F +D+ E+ F + +E I IE ++ AG I+ L +VK++ G SV
Sbjct: 137 ETF----YDKTEVAFWSLSEEEIWTYIETKEPMDKAGAYGIQGRGAL-FVKKIDGDYYSV 191
Query: 212 MGLPKAVTEKLIKE 225
MGLP + T + ++
Sbjct: 192 MGLPISKTMRALRH 205
>pdb|2P5X|A Chain A, Crystal Structure Of Maf Domain Of Human N-Acetylserotonin
O- Methyltransferase-Like Protein
pdb|2P5X|B Chain B, Crystal Structure Of Maf Domain Of Human N-Acetylserotonin
O- Methyltransferase-Like Protein
Length = 230
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 102/202 (50%), Gaps = 15/202 (7%)
Query: 33 KIILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKE--KPEDLVMAIAEAKAEAILNRL 90
+++L S+S R++IL+ G F V+ + EK + P M A+ KA + NRL
Sbjct: 5 RVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVANRL 64
Query: 91 PIGDYIKEAE-PTILITGDQVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVTN 149
Y K+ P ++I D +V G+I EKP +++A R + SG + + + V + +
Sbjct: 65 ----YQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVH 120
Query: 150 LKTGFRKGE------WDRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQ 203
+ + + ++ +++F E+ +E++ + + G ++ AGG I+ +L V+
Sbjct: 121 CSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQ-ALGGMLVES 179
Query: 204 VVGAMDSVMGLP-KAVTEKLIK 224
V G +V+G P ++L+K
Sbjct: 180 VHGDFLNVVGFPLNHFCKQLVK 201
>pdb|3V2H|A Chain A, The Crystal Structure Of D-Beta-Hydroxybutyrate
Dehydrogenase From Sinorhizobium Meliloti
pdb|3V2H|B Chain B, The Crystal Structure Of D-Beta-Hydroxybutyrate
Dehydrogenase From Sinorhizobium Meliloti
Length = 281
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 23/155 (14%)
Query: 78 IAEAKAEAILNRLPIGDYIKEAEPTILITGDQVVVYEGVIREKPSSREEARRFIKDYSGG 137
+A+A A +LN D I+ + V++ KPS + + D GG
Sbjct: 45 LAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADXTKPSEIADXXAXVADRFGG 104
Query: 138 QCATVSSVLVTNLKTGFRKG-------EWDRV-----EIQFHEIPDEV-IEKLIEEGIVL 184
+ +LV N F + +WDR+ FH I + K G ++
Sbjct: 105 -----ADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPXKKKGWGRII 159
Query: 185 NVAGGLIIEHSLIL-PYVKQVVGAMDSVMGLPKAV 218
N+A H L+ P+ V A + GL K V
Sbjct: 160 NIAS----AHGLVASPFKSAYVAAKHGIXGLTKTV 190
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 156 KGEW-DRVEIQFHEIPDEVIEKLIEEGIVLNVAGGLIIEHSLILPYVKQVVGAMDSVMGL 214
K EW + ++ E+PD+ E+LI+E + G+++ H + + ++ V
Sbjct: 284 KKEWIEEIKKNMPELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKE---- 339
Query: 215 PKAVTEKLIKEAL 227
PK + LI + L
Sbjct: 340 PKGIVNWLINDLL 352
>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|1YPF|B Chain B, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|2A1Y|A Chain A, Crystal Structure Of Guac-Gmp Complex From Bacillus
Anthracis At 2.26 A Resolution
Length = 336
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 71 PEDLVMAIAEAKAEAILNRLPIGDYIKEAEPTILITGDQVVVYEGVIREKPSSREEARRF 130
PE + + IA + A++N + +IK+ P + V E V RE ++ +A +
Sbjct: 121 PEYITIDIAHGHSNAVINMI---QHIKKHLPESFVIAGNVGTPEAV-RELENAGADATKV 176
Query: 131 IKDYSGGQCATVSSVLVTNLKTGFRKGEWDRVEIQF 166
V +T +KTGF G W +++
Sbjct: 177 --------GIGPGKVCITKIKTGFGTGGWQLAALRW 204
>pdb|2HSJ|A Chain A, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|B Chain B, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|C Chain C, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|D Chain D, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia
Length = 214
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 94 DYIKEAEPTILITGDQVVVYEGVIREKPSSREEARRFIKDYSGGQCATVSSVLVTNLKTG 153
++I EP IL GD +V Y + +S+ R I+ Y G +L+ NL
Sbjct: 28 NHISVVEPNILFIGDSIVEYYPLQELFGTSKTIVNRGIRGYQTG-------LLLENLDAH 80
Query: 154 FRKGEWDRV 162
G D++
Sbjct: 81 LYGGAVDKI 89
>pdb|3N75|A Chain A, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|B Chain B, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|C Chain C, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|D Chain D, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|E Chain E, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3Q16|A Chain A, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|B Chain B, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|C Chain C, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|D Chain D, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|E Chain E, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
Length = 715
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 20 QSLGNMEASATPVKIILGSSSMPRRKILAEMGYEFSVMAADIDEKSIRKEK--PEDLVM- 76
+++ N P+K+ L + M + +++ G S++A +DE I EK P +L+
Sbjct: 477 KNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFL 536
Query: 77 ---AIAEAKAEAILNRL 90
I + KA ++L L
Sbjct: 537 FSIGIDKTKALSLLRAL 553
>pdb|1NVJ|A Chain A, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|B Chain B, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|C Chain C, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|D Chain D, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|E Chain E, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|F Chain F, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
Length = 140
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 77 AIAEAKAEAILNRLPIGDYIKEAEPTILITGDQVVVYEGVIREKPSSREEARRFIKDY 134
A+AE EA NR P+G L GD++V + GV SS EA +FI DY
Sbjct: 62 ALAEIVDEA-RNRWPLGRVTVIHRIGELWPGDEIV-FVGVTSAHRSSAFEAGQFIMDY 117
>pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|B Chain B, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|C Chain C, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|D Chain D, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|E Chain E, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|F Chain F, Crystal Structure Of E. Coli Glyoxylate Carboligase
Length = 616
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 50 MGYEFSVMAADIDEKSIRKEKPEDLVMAIAEAKAEAILNRLPI 92
G + +A + K+IR KPED+ A +AKA R+P+
Sbjct: 530 YGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALXAQYRVPV 572
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,246,175
Number of Sequences: 62578
Number of extensions: 240204
Number of successful extensions: 520
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 18
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)