Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>027151
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNL
LRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEYDI
AQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADL
RDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGNNMPFIG

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027151
        (227 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2063761 - symbol:AT2G03390 species:3702 "Arabi...   541  3.5e-52   1


>TAIR|locus:2063761 [details] [associations]
            symbol:AT2G03390 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004518 "nuclease
            activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA;ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] InterPro:IPR001943
            InterPro:IPR011722 Pfam:PF02151 Pfam:PF08755 SMART:SM00992
            GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
            SUPFAM:SSF141255 TIGRFAMs:TIGR02097 EMBL:AK176535 EMBL:AK176569
            IPI:IPI00541632 RefSeq:NP_178438.2 UniGene:At.41397
            ProteinModelPortal:Q67Y99 SMR:Q67Y99 PaxDb:Q67Y99 PRIDE:Q67Y99
            EnsemblPlants:AT2G03390.1 GeneID:814868 KEGG:ath:AT2G03390
            TAIR:At2g03390 eggNOG:NOG131964 HOGENOM:HOG000238301
            InParanoid:Q67Y99 OMA:YNRPRHE PhylomeDB:Q67Y99
            ProtClustDB:CLSN2681138 Genevestigator:Q67Y99 Uniprot:Q67Y99
        Length = 330

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 128/222 (57%), Positives = 146/222 (65%)

Query:     1 MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQ-GLHLRVTFN 59
             MVQ  SLSTLT  G+     S  L  R   +   S IG DR C   QF++     R  + 
Sbjct:     1 MVQSQSLSTLTICGSVKV--SSLLRNRLNSVKASSLIG-DR-CVSCQFLRKSPSFRSHWK 56

Query:    60 LLRQRNL-RANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
              L+QRNL R  A W F+GG ++GLD SSERSESANEDIL FFFQLDLATRVQ A+N+E+Y
Sbjct:    57 SLKQRNLLRVEARWPFQGGGEQGLDPSSERSESANEDILIFFFQLDLATRVQYAMNLEQY 116

Query:   119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
             DIAQQLR KLTEVEEE  R  E KRG S+KSEAQDK +SIIRLRADLQ AIDSE+Y LAA
Sbjct:   117 DIAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSEDYGLAA 176

Query:   179 DLRDQICKXXXXXXXXXXXXXXXXXXRFAFRLGQKVNHKIFG 220
              LRD+I K                   +AFRLGQK+ HK FG
Sbjct:   177 KLRDEISKLEAESLAVSAKALAFEKAEYAFRLGQKLRHKTFG 218


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       209   0.00079  112 3  11 22  0.45    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.81u 0.09s 21.90t   Elapsed:  00:00:01
  Total cpu time:  21.81u 0.09s 21.90t   Elapsed:  00:00:01
  Start:  Fri May 10 02:04:22 2013   End:  Fri May 10 02:04:23 2013

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