BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027151
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P75558|UVRB_MYCPN UvrABC system protein B OS=Mycoplasma pneumoniae (strain ATCC 29342
/ M129) GN=uvrB PE=3 SV=1
Length = 657
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKA 168
+Q A N + + ++ +T L L +KS Q KA I +L ++++A
Sbjct: 578 IQMAYNEQHHKTPMTVQKPIT---------LNQPIKLKTKSSEQQKAALIKQLTKEMKQA 628
Query: 169 IDSENYALAADLRDQICKLEAE 190
++NY LA ++RD I +LE +
Sbjct: 629 AANQNYELAIEIRDSIFELEKQ 650
>sp|P47319|UVRB_MYCGE UvrABC system protein B OS=Mycoplasma genitalium (strain ATCC 33530
/ G-37 / NCTC 10195) GN=uvrB PE=3 SV=1
Length = 656
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 145 LSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190
L +KS A+ A I +L +++KA ++NY LA ++RD I +LE E
Sbjct: 604 LKAKSNAEKNAALIKQLTKEMKKAAANQNYELAIEIRDSIFELEKE 649
>sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding subunit ClpE OS=Bacillus
subtilis (strain 168) GN=clpE PE=1 SV=1
Length = 699
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA-TALAFE 202
+D A + + A+ KA++ ENY LAA LRD+ LE + ++SA TA+ E
Sbjct: 322 EDAAERLTAIEAEKTKALEEENYELAAKLRDEELALEKKLNSSSAHTAVTVE 373
>sp|A3PBT3|GLO2_PROM0 Hydroxyacylglutathione hydrolase OS=Prochlorococcus marinus (strain
MIT 9301) GN=gloB PE=3 SV=2
Length = 246
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 73 LFKGGSDRGLD-------ASSERSESANEDILFFFFQLDLATRVQCALNMEEYDIAQQLR 125
LF GG R + +S ER +S +D L + + + ALN++ D Q L+
Sbjct: 139 LFSGGCGRIFEGTYQQMYSSLERIKSLPKDTLIYCAHEYTKSNILWALNLKPKD--QDLK 196
Query: 126 NKLTEVEEEIS 136
NKL+EVE+++S
Sbjct: 197 NKLSEVEKKLS 207
>sp|Q5UYC8|UVRB_HALMA UvrABC system protein B OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=uvrB PE=3
SV=1
Length = 686
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 144 GLSSK--SEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190
G+SS S+A + I +L +Q+A D+ + LAAD+RD+I +L E
Sbjct: 619 GISSDGASDADEATRQIEQLEERMQEAADNLEFELAADIRDRIRELREE 667
>sp|Q8KC79|UVRB_CHLTE UvrABC system protein B OS=Chlorobium tepidum (strain ATCC 49652 /
DSM 12025 / TLS) GN=uvrB PE=3 SV=1
Length = 684
Score = 31.6 bits (70), Expect = 4.4, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 143 RGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLE 188
RG+ D L + + A++QKA + +Y AA LRD+I L+
Sbjct: 631 RGVLDSMSRSDVMLMVAEMNAEMQKAAEQTDYEKAAYLRDEILMLQ 676
>sp|P70298|CUX2_MOUSE Homeobox protein cut-like 2 OS=Mus musculus GN=Cux2 PE=2 SV=2
Length = 1426
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 19/107 (17%)
Query: 101 FQLDLATRVQCALNMEEYDI------AQQLRNKLTEVEEEISRQL-EAKRGLSSKSEAQD 153
F L R++ AL ++ +I AQQLR+ L E+EE + Q+ + +R L++KSEA
Sbjct: 228 FALCSGPRLEAALASKDREILRLLKDAQQLRHSLQELEEVSANQIADLERQLAAKSEA-- 285
Query: 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALA 200
I +L+ L+ D E +++ ++ L A LA+S +L
Sbjct: 286 ----IEKLQEKLEAQADYE------EIKTELSILRAMKLASSTCSLP 322
>sp|B4U3P4|UVRB_STREM UvrABC system protein B OS=Streptococcus equi subsp. zooepidemicus
(strain MGCS10565) GN=uvrB PE=3 SV=1
Length = 663
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLS-------SKSEAQDKALSIIRL 161
+Q A N E I Q ++ + ++ ISR +EAK + ++SE Q+ +I +L
Sbjct: 578 IQMAYNEEHGIIPQTIKKDIRDLIS-ISRAVEAKATEAETNYESMTRSERQE---AIKQL 633
Query: 162 RADLQKAIDSENYALAADLRDQICKLEA 189
+ ++Q+A + ++ LAA LRD I +L+A
Sbjct: 634 QKNMQEAAELLDFELAAQLRDLILELKA 661
>sp|C0MBD7|UVRB_STRE4 UvrABC system protein B OS=Streptococcus equi subsp. equi (strain
4047) GN=uvrB PE=3 SV=1
Length = 663
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLS-------SKSEAQDKALSIIRL 161
+Q A N E I Q ++ + ++ ISR +EAK + ++SE Q+ +I +L
Sbjct: 578 IQMAYNEEHGIIPQTIKKDIRDLIS-ISRAVEAKATEAETNYESMTRSERQE---AIKQL 633
Query: 162 RADLQKAIDSENYALAADLRDQICKLEA 189
+ ++Q+A + ++ LAA LRD I +L+A
Sbjct: 634 QKNMQEAAELLDFELAAQLRDLILELKA 661
>sp|C0MDC6|UVRB_STRS7 UvrABC system protein B OS=Streptococcus equi subsp. zooepidemicus
(strain H70) GN=uvrB PE=3 SV=1
Length = 663
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLS-------SKSEAQDKALSIIRL 161
+Q A N E I Q ++ + ++ ISR +EAK + ++SE Q+ +I +L
Sbjct: 578 IQMAYNEEHGIIPQTIKKDIRDLIS-ISRAVEAKATEAETNYESMTRSERQE---AIKQL 633
Query: 162 RADLQKAIDSENYALAADLRDQICKLEA 189
+ ++Q+A + ++ LAA LRD I +L+A
Sbjct: 634 QKNMQEAAELLDFELAAQLRDLILELKA 661
>sp|Q9Z9L7|EFG_BACHD Elongation factor G OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=fusA PE=3
SV=2
Length = 692
Score = 31.2 bits (69), Expect = 6.2, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 95 DILFFFFQLDLATRVQCALNMEEY-DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQD 153
D++ +F++ DL TR + +EY + AQ+ KL E E+ +L K L + +D
Sbjct: 180 DMVAYFYEDDLGTRTEAKEIPDEYKEQAQEYHEKLVEAAAELDEELMMKY-LEGEELTKD 238
Query: 154 KALSIIR 160
+ + IR
Sbjct: 239 ELKAAIR 245
>sp|Q1QQJ4|MUTS_NITHX DNA mismatch repair protein MutS OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=mutS PE=3 SV=1
Length = 907
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 120 IAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAI 169
+AQ+L LT++ I+R+L+A +S S A+D +I+R D+ +A+
Sbjct: 330 LAQRLAAPLTDIAA-IARRLDAVAAFTSDSAARDDIRTILRTAPDMSRAL 378
>sp|C1CR65|UVRB_STRZT UvrABC system protein B OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=uvrB PE=3 SV=1
Length = 662
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 108 RVQCALNMEEYDIAQQLRNK---LTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRAD 164
++Q A N E + Q ++ + L V + +S++ + + ++S ++ + K L + +L
Sbjct: 577 KIQMAYNEEHGIVPQTIKKEIRDLIAVTKAVSKEEDKEVDINSLNKQERKEL-VKKLEKQ 635
Query: 165 LQKAIDSENYALAADLRDQICKLEA 189
+Q+A++ ++ LAA +RD + +++A
Sbjct: 636 MQEAVEVLDFELAAQIRDMMLEVKA 660
>sp|Q15650|TRIP4_HUMAN Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4
Length = 581
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 137 RQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA 196
++L K GL + +DK L R + ID E+ A+D + KLE E+L
Sbjct: 251 QELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERETLQKRE 310
Query: 197 TALAFENARFAFRLGQKVN 215
L R A RL +KV
Sbjct: 311 EEL--RELRHASRLSKKVT 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,906,682
Number of Sequences: 539616
Number of extensions: 2611148
Number of successful extensions: 9847
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 9791
Number of HSP's gapped (non-prelim): 171
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)